Multiple sequence alignment - TraesCS2B01G133900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G133900 chr2B 100.000 3617 0 0 1 3617 100081729 100078113 0.000000e+00 6680
1 TraesCS2B01G133900 chr2D 96.216 2854 81 14 772 3617 64068244 64065410 0.000000e+00 4647
2 TraesCS2B01G133900 chr2D 85.000 300 39 5 480 773 64068634 64068335 2.110000e-77 300
3 TraesCS2B01G133900 chr2A 95.676 2775 93 14 848 3617 65522067 65519315 0.000000e+00 4434


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G133900 chr2B 100078113 100081729 3616 True 6680.0 6680 100.000 1 3617 1 chr2B.!!$R1 3616
1 TraesCS2B01G133900 chr2D 64065410 64068634 3224 True 2473.5 4647 90.608 480 3617 2 chr2D.!!$R1 3137
2 TraesCS2B01G133900 chr2A 65519315 65522067 2752 True 4434.0 4434 95.676 848 3617 1 chr2A.!!$R1 2769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
469 470 0.095245 CGTATGCGTGCTTCCACAAG 59.905 55.000 0.00 0.0 42.17 3.16 F
955 1057 0.965866 CGGCCCAGTCTGACTAGTCA 60.966 60.000 23.80 23.8 38.06 3.41 F
1524 1627 1.134699 TGCTGCTATAACTCGCTGCTT 60.135 47.619 12.87 0.0 46.83 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2289 2392 0.534203 TTTTGAACCGCTCGGCTTCT 60.534 50.0 8.41 0.0 39.32 2.85 R
2483 2586 0.388659 CTCCTCTGATCTGCCTTCCG 59.611 60.0 0.00 0.0 0.00 4.30 R
2741 2844 0.468226 GGATCCCCGTAGCACATCAA 59.532 55.0 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 9.979578 AGTTTATGCAACTTGTTTTATGATTCA 57.020 25.926 0.00 0.00 43.89 2.57
67 68 9.624697 TGCAACTTGTTTTATGATTCAGAATAC 57.375 29.630 7.42 7.42 0.00 1.89
68 69 9.624697 GCAACTTGTTTTATGATTCAGAATACA 57.375 29.630 11.61 11.61 28.34 2.29
79 80 6.962686 TGATTCAGAATACACTTATGCATGC 58.037 36.000 11.82 11.82 0.00 4.06
80 81 6.769341 TGATTCAGAATACACTTATGCATGCT 59.231 34.615 20.33 7.07 0.00 3.79
81 82 7.283807 TGATTCAGAATACACTTATGCATGCTT 59.716 33.333 20.33 15.55 0.00 3.91
82 83 6.609237 TCAGAATACACTTATGCATGCTTC 57.391 37.500 20.33 10.58 0.00 3.86
83 84 6.351711 TCAGAATACACTTATGCATGCTTCT 58.648 36.000 20.33 12.72 0.00 2.85
84 85 6.259387 TCAGAATACACTTATGCATGCTTCTG 59.741 38.462 23.88 23.88 38.74 3.02
85 86 6.259387 CAGAATACACTTATGCATGCTTCTGA 59.741 38.462 24.87 5.99 39.21 3.27
86 87 6.825213 AGAATACACTTATGCATGCTTCTGAA 59.175 34.615 20.33 3.25 0.00 3.02
87 88 7.501559 AGAATACACTTATGCATGCTTCTGAAT 59.498 33.333 20.33 5.16 0.00 2.57
88 89 8.681486 AATACACTTATGCATGCTTCTGAATA 57.319 30.769 20.33 4.09 0.00 1.75
89 90 8.681486 ATACACTTATGCATGCTTCTGAATAA 57.319 30.769 20.33 11.83 0.00 1.40
90 91 7.578310 ACACTTATGCATGCTTCTGAATAAT 57.422 32.000 20.33 2.82 28.46 1.28
91 92 7.423199 ACACTTATGCATGCTTCTGAATAATG 58.577 34.615 20.33 13.72 28.46 1.90
92 93 6.861572 CACTTATGCATGCTTCTGAATAATGG 59.138 38.462 20.33 5.31 28.46 3.16
93 94 6.774170 ACTTATGCATGCTTCTGAATAATGGA 59.226 34.615 20.33 10.22 28.46 3.41
94 95 7.450634 ACTTATGCATGCTTCTGAATAATGGAT 59.549 33.333 20.33 17.35 34.30 3.41
95 96 6.665992 ATGCATGCTTCTGAATAATGGATT 57.334 33.333 20.33 0.00 0.00 3.01
96 97 6.474140 TGCATGCTTCTGAATAATGGATTT 57.526 33.333 20.33 0.00 0.00 2.17
97 98 7.585579 TGCATGCTTCTGAATAATGGATTTA 57.414 32.000 20.33 0.00 0.00 1.40
98 99 7.654568 TGCATGCTTCTGAATAATGGATTTAG 58.345 34.615 20.33 0.00 33.42 1.85
99 100 7.503230 TGCATGCTTCTGAATAATGGATTTAGA 59.497 33.333 20.33 0.00 38.14 2.10
100 101 8.355169 GCATGCTTCTGAATAATGGATTTAGAA 58.645 33.333 11.37 4.92 43.96 2.10
116 117 9.964354 TGGATTTAGAATATACTTATGCATGCT 57.036 29.630 20.33 7.07 0.00 3.79
123 124 9.736414 AGAATATACTTATGCATGCTTCTGAAT 57.264 29.630 20.33 5.16 0.00 2.57
128 129 6.444633 ACTTATGCATGCTTCTGAATAATGC 58.555 36.000 20.33 21.40 43.08 3.56
130 131 4.929819 TGCATGCTTCTGAATAATGCAT 57.070 36.364 24.59 17.58 46.32 3.96
131 132 5.270893 TGCATGCTTCTGAATAATGCATT 57.729 34.783 24.59 17.56 46.32 3.56
132 133 5.286438 TGCATGCTTCTGAATAATGCATTC 58.714 37.500 24.59 15.79 46.32 2.67
150 151 9.602568 AATGCATTCAGAATACATTTTATGCAA 57.397 25.926 13.86 0.00 46.74 4.08
151 152 8.637281 TGCATTCAGAATACATTTTATGCAAG 57.363 30.769 0.00 0.00 42.68 4.01
152 153 7.223193 TGCATTCAGAATACATTTTATGCAAGC 59.777 33.333 0.00 0.00 42.68 4.01
153 154 7.437267 GCATTCAGAATACATTTTATGCAAGCT 59.563 33.333 0.00 0.00 37.62 3.74
154 155 9.309516 CATTCAGAATACATTTTATGCAAGCTT 57.690 29.630 0.00 0.00 0.00 3.74
155 156 8.915871 TTCAGAATACATTTTATGCAAGCTTC 57.084 30.769 0.00 0.00 0.00 3.86
156 157 8.284945 TCAGAATACATTTTATGCAAGCTTCT 57.715 30.769 0.00 0.00 0.00 2.85
157 158 8.742777 TCAGAATACATTTTATGCAAGCTTCTT 58.257 29.630 0.00 0.00 0.00 2.52
164 165 9.177608 ACATTTTATGCAAGCTTCTTACTATCA 57.822 29.630 0.00 0.00 0.00 2.15
167 168 5.725110 ATGCAAGCTTCTTACTATCAACG 57.275 39.130 0.00 0.00 0.00 4.10
168 169 4.816392 TGCAAGCTTCTTACTATCAACGA 58.184 39.130 0.00 0.00 0.00 3.85
169 170 5.419542 TGCAAGCTTCTTACTATCAACGAT 58.580 37.500 0.00 0.00 0.00 3.73
170 171 6.569780 TGCAAGCTTCTTACTATCAACGATA 58.430 36.000 0.00 0.00 0.00 2.92
171 172 6.697455 TGCAAGCTTCTTACTATCAACGATAG 59.303 38.462 0.00 9.03 45.21 2.08
172 173 6.918569 GCAAGCTTCTTACTATCAACGATAGA 59.081 38.462 16.03 0.00 43.17 1.98
173 174 7.114247 GCAAGCTTCTTACTATCAACGATAGAG 59.886 40.741 16.03 5.89 43.17 2.43
174 175 7.811117 AGCTTCTTACTATCAACGATAGAGT 57.189 36.000 16.03 2.07 43.17 3.24
175 176 7.644490 AGCTTCTTACTATCAACGATAGAGTG 58.356 38.462 16.03 6.73 43.17 3.51
176 177 6.858993 GCTTCTTACTATCAACGATAGAGTGG 59.141 42.308 16.03 5.36 43.17 4.00
177 178 7.468906 GCTTCTTACTATCAACGATAGAGTGGT 60.469 40.741 16.03 0.00 43.17 4.16
178 179 7.876936 TCTTACTATCAACGATAGAGTGGTT 57.123 36.000 16.03 0.00 43.17 3.67
179 180 7.704271 TCTTACTATCAACGATAGAGTGGTTG 58.296 38.462 16.03 1.07 43.17 3.77
183 184 3.999229 CAACGATAGAGTGGTTGAAGC 57.001 47.619 0.00 0.00 45.97 3.86
184 185 3.589988 CAACGATAGAGTGGTTGAAGCT 58.410 45.455 0.00 0.00 45.97 3.74
185 186 3.238108 ACGATAGAGTGGTTGAAGCTG 57.762 47.619 0.00 0.00 41.38 4.24
186 187 2.826128 ACGATAGAGTGGTTGAAGCTGA 59.174 45.455 0.00 0.00 41.38 4.26
187 188 3.258372 ACGATAGAGTGGTTGAAGCTGAA 59.742 43.478 0.00 0.00 41.38 3.02
188 189 4.245660 CGATAGAGTGGTTGAAGCTGAAA 58.754 43.478 0.00 0.00 39.76 2.69
189 190 4.092091 CGATAGAGTGGTTGAAGCTGAAAC 59.908 45.833 3.67 3.67 39.76 2.78
190 191 3.281727 AGAGTGGTTGAAGCTGAAACA 57.718 42.857 12.42 3.63 0.00 2.83
191 192 3.825328 AGAGTGGTTGAAGCTGAAACAT 58.175 40.909 12.42 0.34 0.00 2.71
192 193 4.210331 AGAGTGGTTGAAGCTGAAACATT 58.790 39.130 12.42 3.36 0.00 2.71
193 194 4.646492 AGAGTGGTTGAAGCTGAAACATTT 59.354 37.500 12.42 0.42 0.00 2.32
194 195 5.827797 AGAGTGGTTGAAGCTGAAACATTTA 59.172 36.000 12.42 0.00 0.00 1.40
195 196 6.016777 AGAGTGGTTGAAGCTGAAACATTTAG 60.017 38.462 12.42 0.00 0.00 1.85
196 197 5.594317 AGTGGTTGAAGCTGAAACATTTAGT 59.406 36.000 12.42 0.00 0.00 2.24
197 198 6.096846 AGTGGTTGAAGCTGAAACATTTAGTT 59.903 34.615 12.42 0.00 43.89 2.24
213 214 8.814038 ACATTTAGTTTGAGAGCCATATTTCT 57.186 30.769 0.00 0.00 0.00 2.52
214 215 9.247861 ACATTTAGTTTGAGAGCCATATTTCTT 57.752 29.630 0.00 0.00 0.00 2.52
219 220 8.635765 AGTTTGAGAGCCATATTTCTTTTACA 57.364 30.769 0.00 0.00 0.00 2.41
220 221 8.734386 AGTTTGAGAGCCATATTTCTTTTACAG 58.266 33.333 0.00 0.00 0.00 2.74
221 222 7.630242 TTGAGAGCCATATTTCTTTTACAGG 57.370 36.000 0.00 0.00 0.00 4.00
222 223 6.957631 TGAGAGCCATATTTCTTTTACAGGA 58.042 36.000 0.00 0.00 0.00 3.86
223 224 7.577303 TGAGAGCCATATTTCTTTTACAGGAT 58.423 34.615 0.00 0.00 0.00 3.24
224 225 7.500227 TGAGAGCCATATTTCTTTTACAGGATG 59.500 37.037 0.00 0.00 46.00 3.51
236 237 3.384816 CAGGATGTTGATAGCCGCA 57.615 52.632 0.00 0.00 0.00 5.69
237 238 1.888215 CAGGATGTTGATAGCCGCAT 58.112 50.000 0.00 0.00 0.00 4.73
238 239 2.224606 CAGGATGTTGATAGCCGCATT 58.775 47.619 0.00 0.00 0.00 3.56
239 240 3.402110 CAGGATGTTGATAGCCGCATTA 58.598 45.455 0.00 0.00 0.00 1.90
240 241 3.187227 CAGGATGTTGATAGCCGCATTAC 59.813 47.826 0.00 0.00 0.00 1.89
241 242 3.071602 AGGATGTTGATAGCCGCATTACT 59.928 43.478 0.00 0.00 0.00 2.24
242 243 4.283467 AGGATGTTGATAGCCGCATTACTA 59.717 41.667 0.00 0.00 0.00 1.82
243 244 4.994852 GGATGTTGATAGCCGCATTACTAA 59.005 41.667 0.00 0.00 0.00 2.24
244 245 5.643777 GGATGTTGATAGCCGCATTACTAAT 59.356 40.000 0.00 0.00 0.00 1.73
245 246 6.149474 GGATGTTGATAGCCGCATTACTAATT 59.851 38.462 0.00 0.00 0.00 1.40
246 247 7.333423 GGATGTTGATAGCCGCATTACTAATTA 59.667 37.037 0.00 0.00 0.00 1.40
247 248 7.416154 TGTTGATAGCCGCATTACTAATTAC 57.584 36.000 0.00 0.00 0.00 1.89
248 249 6.425721 TGTTGATAGCCGCATTACTAATTACC 59.574 38.462 0.00 0.00 0.00 2.85
249 250 6.354794 TGATAGCCGCATTACTAATTACCT 57.645 37.500 0.00 0.00 0.00 3.08
250 251 6.163476 TGATAGCCGCATTACTAATTACCTG 58.837 40.000 0.00 0.00 0.00 4.00
251 252 4.682778 AGCCGCATTACTAATTACCTGA 57.317 40.909 0.00 0.00 0.00 3.86
252 253 5.031066 AGCCGCATTACTAATTACCTGAA 57.969 39.130 0.00 0.00 0.00 3.02
253 254 5.057149 AGCCGCATTACTAATTACCTGAAG 58.943 41.667 0.00 0.00 0.00 3.02
254 255 5.054477 GCCGCATTACTAATTACCTGAAGA 58.946 41.667 0.00 0.00 0.00 2.87
255 256 5.177696 GCCGCATTACTAATTACCTGAAGAG 59.822 44.000 0.00 0.00 0.00 2.85
256 257 5.696724 CCGCATTACTAATTACCTGAAGAGG 59.303 44.000 0.00 0.00 46.21 3.69
268 269 4.057406 CCTGAAGAGGTGAGCAAGATAG 57.943 50.000 0.00 0.00 34.16 2.08
269 270 3.456280 CTGAAGAGGTGAGCAAGATAGC 58.544 50.000 0.00 0.00 0.00 2.97
270 271 2.833943 TGAAGAGGTGAGCAAGATAGCA 59.166 45.455 0.00 0.00 36.85 3.49
271 272 3.118847 TGAAGAGGTGAGCAAGATAGCAG 60.119 47.826 0.00 0.00 36.85 4.24
272 273 1.138661 AGAGGTGAGCAAGATAGCAGC 59.861 52.381 0.00 0.00 36.85 5.25
273 274 0.179089 AGGTGAGCAAGATAGCAGCG 60.179 55.000 0.00 0.00 36.85 5.18
274 275 0.179100 GGTGAGCAAGATAGCAGCGA 60.179 55.000 0.00 0.00 36.85 4.93
275 276 1.645034 GTGAGCAAGATAGCAGCGAA 58.355 50.000 0.00 0.00 36.85 4.70
276 277 2.208431 GTGAGCAAGATAGCAGCGAAT 58.792 47.619 0.00 0.00 36.85 3.34
277 278 3.384668 GTGAGCAAGATAGCAGCGAATA 58.615 45.455 0.00 0.00 36.85 1.75
278 279 3.428198 GTGAGCAAGATAGCAGCGAATAG 59.572 47.826 0.00 0.00 36.85 1.73
279 280 3.319122 TGAGCAAGATAGCAGCGAATAGA 59.681 43.478 0.00 0.00 36.85 1.98
280 281 4.202151 TGAGCAAGATAGCAGCGAATAGAA 60.202 41.667 0.00 0.00 36.85 2.10
281 282 4.697514 AGCAAGATAGCAGCGAATAGAAA 58.302 39.130 0.00 0.00 36.85 2.52
282 283 5.303971 AGCAAGATAGCAGCGAATAGAAAT 58.696 37.500 0.00 0.00 36.85 2.17
283 284 5.178996 AGCAAGATAGCAGCGAATAGAAATG 59.821 40.000 0.00 0.00 36.85 2.32
284 285 5.380651 CAAGATAGCAGCGAATAGAAATGC 58.619 41.667 0.00 0.00 37.15 3.56
285 286 4.635223 AGATAGCAGCGAATAGAAATGCA 58.365 39.130 0.00 0.00 39.34 3.96
286 287 5.243981 AGATAGCAGCGAATAGAAATGCAT 58.756 37.500 0.00 0.00 39.34 3.96
287 288 5.704515 AGATAGCAGCGAATAGAAATGCATT 59.295 36.000 5.99 5.99 39.34 3.56
288 289 3.961182 AGCAGCGAATAGAAATGCATTG 58.039 40.909 13.82 0.00 39.34 2.82
289 290 3.047796 GCAGCGAATAGAAATGCATTGG 58.952 45.455 13.82 0.00 36.88 3.16
290 291 3.047796 CAGCGAATAGAAATGCATTGGC 58.952 45.455 13.82 8.55 36.47 4.52
291 292 2.035066 AGCGAATAGAAATGCATTGGCC 59.965 45.455 13.82 5.69 36.78 5.36
292 293 2.223782 GCGAATAGAAATGCATTGGCCA 60.224 45.455 13.82 0.00 40.13 5.36
293 294 3.374745 CGAATAGAAATGCATTGGCCAC 58.625 45.455 13.82 0.00 40.13 5.01
294 295 3.067180 CGAATAGAAATGCATTGGCCACT 59.933 43.478 13.82 0.00 40.13 4.00
295 296 4.365723 GAATAGAAATGCATTGGCCACTG 58.634 43.478 18.38 18.38 40.13 3.66
296 297 0.899720 AGAAATGCATTGGCCACTGG 59.100 50.000 23.17 9.03 40.13 4.00
321 322 2.894307 GGCACGTCTGACCATTAAAC 57.106 50.000 1.55 0.00 0.00 2.01
322 323 2.147958 GGCACGTCTGACCATTAAACA 58.852 47.619 1.55 0.00 0.00 2.83
323 324 2.159627 GGCACGTCTGACCATTAAACAG 59.840 50.000 1.55 0.00 0.00 3.16
324 325 3.064207 GCACGTCTGACCATTAAACAGA 58.936 45.455 1.55 0.00 38.16 3.41
325 326 3.684788 GCACGTCTGACCATTAAACAGAT 59.315 43.478 1.55 0.00 41.57 2.90
326 327 4.868171 GCACGTCTGACCATTAAACAGATA 59.132 41.667 1.55 0.00 41.57 1.98
327 328 5.220416 GCACGTCTGACCATTAAACAGATAC 60.220 44.000 1.55 0.00 41.57 2.24
328 329 5.867174 CACGTCTGACCATTAAACAGATACA 59.133 40.000 1.55 0.00 41.57 2.29
329 330 6.535150 CACGTCTGACCATTAAACAGATACAT 59.465 38.462 1.55 0.00 41.57 2.29
330 331 7.064609 CACGTCTGACCATTAAACAGATACATT 59.935 37.037 1.55 0.00 41.57 2.71
331 332 7.064609 ACGTCTGACCATTAAACAGATACATTG 59.935 37.037 1.55 0.00 41.57 2.82
332 333 7.465916 CGTCTGACCATTAAACAGATACATTGG 60.466 40.741 1.55 0.00 41.57 3.16
333 334 6.318648 TCTGACCATTAAACAGATACATTGGC 59.681 38.462 0.00 0.00 36.04 4.52
334 335 6.186957 TGACCATTAAACAGATACATTGGCT 58.813 36.000 0.00 0.00 0.00 4.75
335 336 6.318648 TGACCATTAAACAGATACATTGGCTC 59.681 38.462 0.00 0.00 0.00 4.70
336 337 6.186957 ACCATTAAACAGATACATTGGCTCA 58.813 36.000 0.00 0.00 0.00 4.26
337 338 6.663093 ACCATTAAACAGATACATTGGCTCAA 59.337 34.615 0.00 0.00 0.00 3.02
338 339 7.342799 ACCATTAAACAGATACATTGGCTCAAT 59.657 33.333 0.00 0.00 34.04 2.57
339 340 7.864379 CCATTAAACAGATACATTGGCTCAATC 59.136 37.037 0.00 0.00 31.05 2.67
340 341 8.627403 CATTAAACAGATACATTGGCTCAATCT 58.373 33.333 0.00 0.00 31.05 2.40
341 342 8.579850 TTAAACAGATACATTGGCTCAATCTT 57.420 30.769 0.00 0.00 31.05 2.40
342 343 6.690194 AACAGATACATTGGCTCAATCTTC 57.310 37.500 0.00 0.00 31.05 2.87
343 344 5.748402 ACAGATACATTGGCTCAATCTTCA 58.252 37.500 0.00 0.00 31.05 3.02
344 345 5.821470 ACAGATACATTGGCTCAATCTTCAG 59.179 40.000 0.00 0.00 31.05 3.02
345 346 4.820716 AGATACATTGGCTCAATCTTCAGC 59.179 41.667 0.00 0.00 31.05 4.26
346 347 1.741706 ACATTGGCTCAATCTTCAGCG 59.258 47.619 0.00 0.00 36.41 5.18
347 348 0.737219 ATTGGCTCAATCTTCAGCGC 59.263 50.000 0.00 0.00 36.41 5.92
348 349 0.606130 TTGGCTCAATCTTCAGCGCA 60.606 50.000 11.47 0.00 36.41 6.09
349 350 1.022982 TGGCTCAATCTTCAGCGCAG 61.023 55.000 11.47 0.00 36.41 5.18
364 365 2.184385 CGCAGCAAGGCTCTAAAATG 57.816 50.000 0.00 0.00 36.40 2.32
365 366 1.796617 CGCAGCAAGGCTCTAAAATGC 60.797 52.381 0.00 0.00 36.40 3.56
366 367 1.203052 GCAGCAAGGCTCTAAAATGCA 59.797 47.619 9.08 0.00 36.40 3.96
367 368 2.159142 GCAGCAAGGCTCTAAAATGCAT 60.159 45.455 9.08 0.00 36.40 3.96
368 369 3.677976 GCAGCAAGGCTCTAAAATGCATT 60.678 43.478 5.99 5.99 36.40 3.56
370 371 3.118884 AGCAAGGCTCTAAAATGCATTGG 60.119 43.478 13.82 6.83 46.66 3.16
371 372 3.192466 CAAGGCTCTAAAATGCATTGGC 58.808 45.455 13.82 12.17 44.09 4.52
372 373 2.743553 AGGCTCTAAAATGCATTGGCT 58.256 42.857 13.82 14.31 41.91 4.75
373 374 2.692041 AGGCTCTAAAATGCATTGGCTC 59.308 45.455 13.82 7.16 41.91 4.70
374 375 2.428171 GGCTCTAAAATGCATTGGCTCA 59.572 45.455 13.82 0.00 41.91 4.26
375 376 3.119029 GGCTCTAAAATGCATTGGCTCAA 60.119 43.478 13.82 0.00 41.91 3.02
376 377 4.110482 GCTCTAAAATGCATTGGCTCAAG 58.890 43.478 13.82 7.46 41.91 3.02
377 378 4.142315 GCTCTAAAATGCATTGGCTCAAGA 60.142 41.667 13.82 8.67 41.91 3.02
378 379 5.451520 GCTCTAAAATGCATTGGCTCAAGAT 60.452 40.000 13.82 0.00 41.91 2.40
379 380 5.898174 TCTAAAATGCATTGGCTCAAGATG 58.102 37.500 13.82 0.00 41.91 2.90
380 381 3.536956 AAATGCATTGGCTCAAGATGG 57.463 42.857 13.82 0.00 41.91 3.51
381 382 2.447408 ATGCATTGGCTCAAGATGGA 57.553 45.000 0.00 0.00 41.91 3.41
382 383 2.219080 TGCATTGGCTCAAGATGGAA 57.781 45.000 0.00 0.00 41.91 3.53
383 384 2.742348 TGCATTGGCTCAAGATGGAAT 58.258 42.857 0.00 0.00 41.91 3.01
384 385 3.900971 TGCATTGGCTCAAGATGGAATA 58.099 40.909 0.00 0.00 41.91 1.75
385 386 4.279982 TGCATTGGCTCAAGATGGAATAA 58.720 39.130 0.00 0.00 41.91 1.40
386 387 4.897076 TGCATTGGCTCAAGATGGAATAAT 59.103 37.500 0.00 0.00 41.91 1.28
387 388 5.221362 TGCATTGGCTCAAGATGGAATAATG 60.221 40.000 0.00 0.00 41.91 1.90
388 389 5.010314 GCATTGGCTCAAGATGGAATAATGA 59.990 40.000 0.00 0.00 36.96 2.57
389 390 6.444633 CATTGGCTCAAGATGGAATAATGAC 58.555 40.000 0.00 0.00 0.00 3.06
390 391 4.464008 TGGCTCAAGATGGAATAATGACC 58.536 43.478 0.00 0.00 0.00 4.02
391 392 4.079844 TGGCTCAAGATGGAATAATGACCA 60.080 41.667 0.00 0.00 40.57 4.02
392 393 4.889409 GGCTCAAGATGGAATAATGACCAA 59.111 41.667 0.00 0.00 39.69 3.67
393 394 5.360714 GGCTCAAGATGGAATAATGACCAAA 59.639 40.000 0.00 0.00 39.69 3.28
394 395 6.127366 GGCTCAAGATGGAATAATGACCAAAA 60.127 38.462 0.00 0.00 39.69 2.44
395 396 6.976925 GCTCAAGATGGAATAATGACCAAAAG 59.023 38.462 0.00 0.00 39.69 2.27
396 397 7.148018 GCTCAAGATGGAATAATGACCAAAAGA 60.148 37.037 0.00 0.00 39.69 2.52
397 398 8.827832 TCAAGATGGAATAATGACCAAAAGAT 57.172 30.769 0.00 0.00 39.69 2.40
398 399 9.258629 TCAAGATGGAATAATGACCAAAAGATT 57.741 29.630 0.00 0.00 39.69 2.40
399 400 9.880157 CAAGATGGAATAATGACCAAAAGATTT 57.120 29.630 0.00 0.00 39.69 2.17
408 409 7.797121 AATGACCAAAAGATTTTACATCCCT 57.203 32.000 0.00 0.00 0.00 4.20
409 410 8.893563 AATGACCAAAAGATTTTACATCCCTA 57.106 30.769 0.00 0.00 0.00 3.53
410 411 7.696992 TGACCAAAAGATTTTACATCCCTAC 57.303 36.000 0.00 0.00 0.00 3.18
411 412 7.235079 TGACCAAAAGATTTTACATCCCTACA 58.765 34.615 0.00 0.00 0.00 2.74
412 413 7.393234 TGACCAAAAGATTTTACATCCCTACAG 59.607 37.037 0.00 0.00 0.00 2.74
413 414 7.466804 ACCAAAAGATTTTACATCCCTACAGA 58.533 34.615 0.00 0.00 0.00 3.41
414 415 7.947890 ACCAAAAGATTTTACATCCCTACAGAA 59.052 33.333 0.00 0.00 0.00 3.02
415 416 8.462016 CCAAAAGATTTTACATCCCTACAGAAG 58.538 37.037 0.00 0.00 0.00 2.85
416 417 9.231297 CAAAAGATTTTACATCCCTACAGAAGA 57.769 33.333 0.00 0.00 0.00 2.87
417 418 9.807921 AAAAGATTTTACATCCCTACAGAAGAA 57.192 29.630 0.00 0.00 0.00 2.52
418 419 8.794335 AAGATTTTACATCCCTACAGAAGAAC 57.206 34.615 0.00 0.00 0.00 3.01
419 420 7.918076 AGATTTTACATCCCTACAGAAGAACA 58.082 34.615 0.00 0.00 0.00 3.18
420 421 8.552296 AGATTTTACATCCCTACAGAAGAACAT 58.448 33.333 0.00 0.00 0.00 2.71
421 422 9.178758 GATTTTACATCCCTACAGAAGAACATT 57.821 33.333 0.00 0.00 0.00 2.71
422 423 7.921786 TTTACATCCCTACAGAAGAACATTG 57.078 36.000 0.00 0.00 0.00 2.82
423 424 5.505181 ACATCCCTACAGAAGAACATTGT 57.495 39.130 0.00 0.00 0.00 2.71
424 425 6.620877 ACATCCCTACAGAAGAACATTGTA 57.379 37.500 0.00 0.00 0.00 2.41
425 426 6.644347 ACATCCCTACAGAAGAACATTGTAG 58.356 40.000 4.36 4.36 42.35 2.74
426 427 5.086104 TCCCTACAGAAGAACATTGTAGC 57.914 43.478 5.57 0.00 41.71 3.58
427 428 4.530553 TCCCTACAGAAGAACATTGTAGCA 59.469 41.667 5.57 0.00 41.71 3.49
428 429 5.012664 TCCCTACAGAAGAACATTGTAGCAA 59.987 40.000 5.57 0.00 41.71 3.91
429 430 5.352569 CCCTACAGAAGAACATTGTAGCAAG 59.647 44.000 5.57 0.00 41.71 4.01
430 431 5.352569 CCTACAGAAGAACATTGTAGCAAGG 59.647 44.000 5.57 0.00 41.71 3.61
431 432 3.503748 ACAGAAGAACATTGTAGCAAGGC 59.496 43.478 0.00 0.00 0.00 4.35
432 433 2.744202 AGAAGAACATTGTAGCAAGGCG 59.256 45.455 0.00 0.00 0.00 5.52
433 434 0.804989 AGAACATTGTAGCAAGGCGC 59.195 50.000 0.00 0.00 42.91 6.53
443 444 4.891727 CAAGGCGCGCGTATCCCT 62.892 66.667 32.35 25.25 0.00 4.20
444 445 4.587189 AAGGCGCGCGTATCCCTC 62.587 66.667 32.35 12.47 0.00 4.30
446 447 3.667282 GGCGCGCGTATCCCTCTA 61.667 66.667 32.35 0.00 0.00 2.43
447 448 2.126812 GCGCGCGTATCCCTCTAG 60.127 66.667 32.35 0.00 0.00 2.43
448 449 2.905807 GCGCGCGTATCCCTCTAGT 61.906 63.158 32.35 0.00 0.00 2.57
449 450 1.082038 CGCGCGTATCCCTCTAGTG 60.082 63.158 24.19 0.00 0.00 2.74
450 451 1.371881 GCGCGTATCCCTCTAGTGC 60.372 63.158 8.43 0.00 0.00 4.40
451 452 1.082038 CGCGTATCCCTCTAGTGCG 60.082 63.158 0.00 0.00 38.04 5.34
452 453 1.783031 CGCGTATCCCTCTAGTGCGT 61.783 60.000 0.00 0.00 39.31 5.24
453 454 1.233019 GCGTATCCCTCTAGTGCGTA 58.767 55.000 0.00 0.00 0.00 4.42
454 455 1.811359 GCGTATCCCTCTAGTGCGTAT 59.189 52.381 0.00 0.00 0.00 3.06
455 456 2.414293 GCGTATCCCTCTAGTGCGTATG 60.414 54.545 0.00 0.00 0.00 2.39
456 457 2.414293 CGTATCCCTCTAGTGCGTATGC 60.414 54.545 0.00 0.00 43.20 3.14
466 467 2.399611 GCGTATGCGTGCTTCCAC 59.600 61.111 4.81 0.00 40.81 4.02
467 468 2.387445 GCGTATGCGTGCTTCCACA 61.387 57.895 4.81 0.00 42.17 4.17
468 469 1.906994 GCGTATGCGTGCTTCCACAA 61.907 55.000 4.81 0.00 42.17 3.33
469 470 0.095245 CGTATGCGTGCTTCCACAAG 59.905 55.000 0.00 0.00 42.17 3.16
470 471 1.438651 GTATGCGTGCTTCCACAAGA 58.561 50.000 0.00 0.00 42.17 3.02
471 472 1.804151 GTATGCGTGCTTCCACAAGAA 59.196 47.619 0.00 0.00 42.17 2.52
529 531 4.277174 TGTGCTTCCACGTGAACATAATTT 59.723 37.500 19.30 0.00 45.04 1.82
567 570 6.909550 TGGAGCACCATTTAGTACAATTTT 57.090 33.333 0.00 0.00 41.77 1.82
582 585 5.888412 ACAATTTTGAAGAACATGCGAAC 57.112 34.783 0.00 0.00 0.00 3.95
584 587 5.459762 ACAATTTTGAAGAACATGCGAACTG 59.540 36.000 0.00 0.00 0.00 3.16
588 591 3.990092 TGAAGAACATGCGAACTGTAGT 58.010 40.909 0.00 0.00 0.00 2.73
590 593 4.814234 TGAAGAACATGCGAACTGTAGTTT 59.186 37.500 0.00 0.00 38.56 2.66
597 600 1.871039 GCGAACTGTAGTTTTGGAGCA 59.129 47.619 0.00 0.00 38.56 4.26
606 609 6.313905 ACTGTAGTTTTGGAGCATAGATTTCG 59.686 38.462 0.00 0.00 0.00 3.46
609 612 2.708216 TTGGAGCATAGATTTCGCCA 57.292 45.000 0.00 0.00 0.00 5.69
672 679 2.238521 ACTTGACGTGGGAAATGCAAT 58.761 42.857 0.00 0.00 0.00 3.56
673 680 3.417101 ACTTGACGTGGGAAATGCAATA 58.583 40.909 0.00 0.00 0.00 1.90
682 689 5.537188 GTGGGAAATGCAATAGTGAAAACA 58.463 37.500 0.00 0.00 0.00 2.83
684 691 5.304101 TGGGAAATGCAATAGTGAAAACAGT 59.696 36.000 0.00 0.00 0.00 3.55
689 696 7.467557 AATGCAATAGTGAAAACAGTTTGTG 57.532 32.000 0.00 0.00 0.00 3.33
698 705 8.168681 AGTGAAAACAGTTTGTGATTTAAACG 57.831 30.769 0.00 0.00 41.61 3.60
702 709 6.509317 AACAGTTTGTGATTTAAACGCATG 57.491 33.333 0.00 0.00 41.61 4.06
724 731 7.864379 GCATGGTTCGAGATAAATCATTTTCAT 59.136 33.333 0.00 0.00 0.00 2.57
770 777 5.344743 ACACTACATAACCCACTCATCTG 57.655 43.478 0.00 0.00 0.00 2.90
777 876 7.016153 ACATAACCCACTCATCTGTTTCTAA 57.984 36.000 0.00 0.00 0.00 2.10
785 884 5.181811 CACTCATCTGTTTCTAATTGCCACA 59.818 40.000 0.00 0.00 0.00 4.17
804 903 1.068588 CAACTTGTCACGGTCAGAGGA 59.931 52.381 0.00 0.00 0.00 3.71
805 904 1.633774 ACTTGTCACGGTCAGAGGAT 58.366 50.000 0.00 0.00 0.00 3.24
835 934 4.705110 TTTTGAGGACAACCATCAGAGA 57.295 40.909 0.00 0.00 38.94 3.10
862 964 4.137543 GAGAAGGTGGAAGTGACATTTGT 58.862 43.478 0.00 0.00 0.00 2.83
898 1000 2.158460 AGCCCACCAAAACTAAAGCTCT 60.158 45.455 0.00 0.00 0.00 4.09
899 1001 3.073946 AGCCCACCAAAACTAAAGCTCTA 59.926 43.478 0.00 0.00 0.00 2.43
946 1048 2.032681 GAAAGCACGGCCCAGTCT 59.967 61.111 0.00 0.00 0.00 3.24
955 1057 0.965866 CGGCCCAGTCTGACTAGTCA 60.966 60.000 23.80 23.80 38.06 3.41
957 1059 1.551452 GCCCAGTCTGACTAGTCACT 58.449 55.000 21.74 15.09 35.46 3.41
958 1060 2.620886 GGCCCAGTCTGACTAGTCACTA 60.621 54.545 21.74 10.06 35.46 2.74
959 1061 2.685897 GCCCAGTCTGACTAGTCACTAG 59.314 54.545 21.74 10.55 39.72 2.57
1116 1219 2.204151 CTCCTCACCCCCACCCTT 60.204 66.667 0.00 0.00 0.00 3.95
1376 1479 2.743928 CAGGAAGGCGCTCGCTTT 60.744 61.111 11.30 11.30 43.12 3.51
1524 1627 1.134699 TGCTGCTATAACTCGCTGCTT 60.135 47.619 12.87 0.00 46.83 3.91
1727 1830 3.128938 GGCGATGTCTACTTCTACAGTGT 59.871 47.826 0.00 0.00 35.97 3.55
1851 1954 3.698040 GAGCATTGATCAATGGGTTCTGT 59.302 43.478 37.09 14.83 46.14 3.41
1912 2015 5.068460 ACAGATATGCAGTTGAGAGGAGTAC 59.932 44.000 0.00 0.00 0.00 2.73
1916 2019 1.813786 GCAGTTGAGAGGAGTACGACT 59.186 52.381 0.00 0.00 0.00 4.18
2122 2225 2.456577 TCATGACCGAGAATGGAGTCA 58.543 47.619 0.00 0.00 42.95 3.41
2262 2365 7.224753 GTCGTAACCTACAATGTCATGATTGAT 59.775 37.037 14.50 3.64 36.89 2.57
2289 2392 3.134623 ACATCAAGAATGGGAGCATACGA 59.865 43.478 0.00 0.00 39.90 3.43
2483 2586 4.280677 AGCTCTGATATCAGGTCTAGCAAC 59.719 45.833 30.61 13.34 43.91 4.17
2577 2680 9.593134 GATACTCTATATTCTATGCTTGTTGGG 57.407 37.037 0.00 0.00 0.00 4.12
2613 2716 8.314021 ACAGATAAAAGAAAACATGAAATCCCC 58.686 33.333 0.00 0.00 0.00 4.81
2661 2764 9.331282 GGCTTATTGTTCTTAACAGATGATACT 57.669 33.333 0.00 0.00 43.27 2.12
2725 2828 2.821366 CCAAGGCTGGTAGCGCTG 60.821 66.667 22.90 3.67 43.62 5.18
2741 2844 1.075482 CTGTTGCCATGTCCAGGGT 59.925 57.895 0.00 0.00 34.16 4.34
2753 2856 0.249120 TCCAGGGTTGATGTGCTACG 59.751 55.000 0.00 0.00 0.00 3.51
2777 2880 2.431942 CGGCGTCGCTACCAGTTT 60.432 61.111 18.11 0.00 0.00 2.66
2797 2900 2.747855 GGCAGGACCGCAGAAAGG 60.748 66.667 9.90 0.00 0.00 3.11
2809 2912 0.031178 CAGAAAGGCTGGCACAACAC 59.969 55.000 3.38 0.00 41.07 3.32
2822 2925 2.859806 GCACAACACTGATTTGGTGCTC 60.860 50.000 7.27 0.00 37.76 4.26
2991 3096 2.749621 CAGGCCTTTGGATGTACTGAAC 59.250 50.000 0.00 0.00 0.00 3.18
3000 3105 9.104965 CCTTTGGATGTACTGAACGATTAATTA 57.895 33.333 0.00 0.00 0.00 1.40
3043 3148 4.024556 CCTATTTTGGAGCATGTCGATGTC 60.025 45.833 0.00 0.00 31.50 3.06
3044 3149 1.358877 TTTGGAGCATGTCGATGTCG 58.641 50.000 0.00 0.00 41.45 4.35
3080 3185 8.342634 GTTTTTGTCTTACTTCTGAGTGCATTA 58.657 33.333 0.00 0.00 36.60 1.90
3115 3220 4.346709 TCGGCACCTGGATCAGATTATTTA 59.653 41.667 0.00 0.00 32.44 1.40
3116 3221 5.063204 CGGCACCTGGATCAGATTATTTAA 58.937 41.667 0.00 0.00 32.44 1.52
3339 3447 5.863965 TGACTGTCAAATTAGGACATGTCA 58.136 37.500 26.47 23.12 43.72 3.58
3372 3480 5.858381 TCTTCCTCTGGCATACATACATTC 58.142 41.667 0.00 0.00 0.00 2.67
3463 3571 7.467811 GCCTTTGGATGTCAGTAATGACTATTG 60.468 40.741 22.54 7.71 39.41 1.90
3511 3619 4.330347 GGCATTCGAAGTTAGAACCTCTTC 59.670 45.833 3.35 0.00 35.60 2.87
3529 3637 9.668497 AACCTCTTCAAACTGTAATAACTATCC 57.332 33.333 0.00 0.00 0.00 2.59
3570 3678 9.863650 AATCATGAATGGTAGAATCTTCAGAAT 57.136 29.630 0.00 0.00 31.69 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.624697 GTATTCTGAATCATAAAACAAGTTGCA 57.375 29.630 6.10 0.00 0.00 4.08
42 43 9.624697 TGTATTCTGAATCATAAAACAAGTTGC 57.375 29.630 6.10 0.00 0.00 4.17
53 54 8.724229 GCATGCATAAGTGTATTCTGAATCATA 58.276 33.333 14.21 0.00 0.00 2.15
54 55 7.447545 AGCATGCATAAGTGTATTCTGAATCAT 59.552 33.333 21.98 0.00 0.00 2.45
55 56 6.769341 AGCATGCATAAGTGTATTCTGAATCA 59.231 34.615 21.98 2.67 0.00 2.57
56 57 7.199541 AGCATGCATAAGTGTATTCTGAATC 57.800 36.000 21.98 0.06 0.00 2.52
57 58 7.501559 AGAAGCATGCATAAGTGTATTCTGAAT 59.498 33.333 21.98 8.14 0.00 2.57
58 59 6.825213 AGAAGCATGCATAAGTGTATTCTGAA 59.175 34.615 21.98 0.00 0.00 3.02
59 60 6.259387 CAGAAGCATGCATAAGTGTATTCTGA 59.741 38.462 24.87 0.00 40.15 3.27
60 61 6.259387 TCAGAAGCATGCATAAGTGTATTCTG 59.741 38.462 23.88 23.88 39.68 3.02
61 62 6.351711 TCAGAAGCATGCATAAGTGTATTCT 58.648 36.000 21.98 13.34 0.00 2.40
62 63 6.609237 TCAGAAGCATGCATAAGTGTATTC 57.391 37.500 21.98 11.19 0.00 1.75
63 64 7.578310 ATTCAGAAGCATGCATAAGTGTATT 57.422 32.000 21.98 1.00 0.00 1.89
64 65 8.681486 TTATTCAGAAGCATGCATAAGTGTAT 57.319 30.769 21.98 10.80 0.00 2.29
65 66 8.562052 CATTATTCAGAAGCATGCATAAGTGTA 58.438 33.333 21.98 4.06 0.00 2.90
66 67 7.423199 CATTATTCAGAAGCATGCATAAGTGT 58.577 34.615 21.98 3.40 0.00 3.55
67 68 6.861572 CCATTATTCAGAAGCATGCATAAGTG 59.138 38.462 21.98 9.64 0.00 3.16
68 69 6.774170 TCCATTATTCAGAAGCATGCATAAGT 59.226 34.615 21.98 0.00 0.00 2.24
69 70 7.210718 TCCATTATTCAGAAGCATGCATAAG 57.789 36.000 21.98 7.18 0.00 1.73
70 71 7.770366 ATCCATTATTCAGAAGCATGCATAA 57.230 32.000 21.98 13.75 0.00 1.90
71 72 7.770366 AATCCATTATTCAGAAGCATGCATA 57.230 32.000 21.98 4.69 0.00 3.14
72 73 6.665992 AATCCATTATTCAGAAGCATGCAT 57.334 33.333 21.98 8.13 0.00 3.96
73 74 6.474140 AAATCCATTATTCAGAAGCATGCA 57.526 33.333 21.98 0.00 0.00 3.96
74 75 7.879070 TCTAAATCCATTATTCAGAAGCATGC 58.121 34.615 10.51 10.51 0.00 4.06
90 91 9.964354 AGCATGCATAAGTATATTCTAAATCCA 57.036 29.630 21.98 0.00 0.00 3.41
97 98 9.736414 ATTCAGAAGCATGCATAAGTATATTCT 57.264 29.630 21.98 13.34 30.50 2.40
102 103 8.242053 GCATTATTCAGAAGCATGCATAAGTAT 58.758 33.333 21.98 8.81 40.06 2.12
103 104 7.229106 TGCATTATTCAGAAGCATGCATAAGTA 59.771 33.333 21.98 0.94 44.07 2.24
104 105 6.040054 TGCATTATTCAGAAGCATGCATAAGT 59.960 34.615 21.98 0.00 44.07 2.24
105 106 6.443792 TGCATTATTCAGAAGCATGCATAAG 58.556 36.000 21.98 7.18 44.07 1.73
106 107 6.394025 TGCATTATTCAGAAGCATGCATAA 57.606 33.333 21.98 13.75 44.07 1.90
108 109 4.929819 TGCATTATTCAGAAGCATGCAT 57.070 36.364 21.98 8.13 44.07 3.96
110 111 5.824243 GAATGCATTATTCAGAAGCATGC 57.176 39.130 12.97 10.51 44.40 4.06
125 126 9.256477 CTTGCATAAAATGTATTCTGAATGCAT 57.744 29.630 22.89 22.89 45.42 3.96
126 127 7.223193 GCTTGCATAAAATGTATTCTGAATGCA 59.777 33.333 20.69 20.69 44.71 3.96
127 128 7.437267 AGCTTGCATAAAATGTATTCTGAATGC 59.563 33.333 13.01 11.96 39.08 3.56
128 129 8.867112 AGCTTGCATAAAATGTATTCTGAATG 57.133 30.769 13.01 0.00 0.00 2.67
129 130 9.525409 GAAGCTTGCATAAAATGTATTCTGAAT 57.475 29.630 2.10 8.14 0.00 2.57
130 131 8.742777 AGAAGCTTGCATAAAATGTATTCTGAA 58.257 29.630 2.10 0.00 0.00 3.02
131 132 8.284945 AGAAGCTTGCATAAAATGTATTCTGA 57.715 30.769 2.10 0.00 0.00 3.27
132 133 8.922058 AAGAAGCTTGCATAAAATGTATTCTG 57.078 30.769 2.10 0.00 0.00 3.02
138 139 9.177608 TGATAGTAAGAAGCTTGCATAAAATGT 57.822 29.630 2.10 0.00 0.00 2.71
141 142 8.175069 CGTTGATAGTAAGAAGCTTGCATAAAA 58.825 33.333 2.10 0.00 0.00 1.52
142 143 7.547722 TCGTTGATAGTAAGAAGCTTGCATAAA 59.452 33.333 2.10 0.00 0.00 1.40
143 144 7.039270 TCGTTGATAGTAAGAAGCTTGCATAA 58.961 34.615 2.10 0.00 0.00 1.90
144 145 6.569780 TCGTTGATAGTAAGAAGCTTGCATA 58.430 36.000 2.10 0.00 0.00 3.14
145 146 5.419542 TCGTTGATAGTAAGAAGCTTGCAT 58.580 37.500 2.10 0.00 0.00 3.96
146 147 4.816392 TCGTTGATAGTAAGAAGCTTGCA 58.184 39.130 2.10 0.00 0.00 4.08
147 148 5.975410 ATCGTTGATAGTAAGAAGCTTGC 57.025 39.130 2.10 0.00 0.00 4.01
148 149 8.132362 ACTCTATCGTTGATAGTAAGAAGCTTG 58.868 37.037 2.10 0.00 41.74 4.01
149 150 8.132362 CACTCTATCGTTGATAGTAAGAAGCTT 58.868 37.037 0.00 0.00 41.74 3.74
150 151 7.255312 CCACTCTATCGTTGATAGTAAGAAGCT 60.255 40.741 12.24 0.00 41.74 3.74
151 152 6.858993 CCACTCTATCGTTGATAGTAAGAAGC 59.141 42.308 12.24 0.00 41.74 3.86
152 153 7.932335 ACCACTCTATCGTTGATAGTAAGAAG 58.068 38.462 12.24 6.03 41.74 2.85
153 154 7.876936 ACCACTCTATCGTTGATAGTAAGAA 57.123 36.000 12.24 0.00 41.74 2.52
154 155 7.555195 TCAACCACTCTATCGTTGATAGTAAGA 59.445 37.037 12.24 0.00 41.74 2.10
155 156 7.704271 TCAACCACTCTATCGTTGATAGTAAG 58.296 38.462 12.24 7.17 41.74 2.34
156 157 7.634671 TCAACCACTCTATCGTTGATAGTAA 57.365 36.000 12.24 0.00 41.74 2.24
157 158 7.634671 TTCAACCACTCTATCGTTGATAGTA 57.365 36.000 12.24 1.49 43.83 1.82
158 159 6.525578 TTCAACCACTCTATCGTTGATAGT 57.474 37.500 12.24 0.00 43.83 2.12
159 160 5.460419 GCTTCAACCACTCTATCGTTGATAG 59.540 44.000 7.38 7.38 43.83 2.08
160 161 5.127194 AGCTTCAACCACTCTATCGTTGATA 59.873 40.000 2.98 0.00 43.83 2.15
161 162 4.081420 AGCTTCAACCACTCTATCGTTGAT 60.081 41.667 2.98 0.00 43.83 2.57
162 163 3.258372 AGCTTCAACCACTCTATCGTTGA 59.742 43.478 0.00 0.00 43.00 3.18
163 164 3.369147 CAGCTTCAACCACTCTATCGTTG 59.631 47.826 0.00 0.00 38.56 4.10
164 165 3.258372 TCAGCTTCAACCACTCTATCGTT 59.742 43.478 0.00 0.00 0.00 3.85
165 166 2.826128 TCAGCTTCAACCACTCTATCGT 59.174 45.455 0.00 0.00 0.00 3.73
166 167 3.510388 TCAGCTTCAACCACTCTATCG 57.490 47.619 0.00 0.00 0.00 2.92
167 168 4.997395 TGTTTCAGCTTCAACCACTCTATC 59.003 41.667 2.91 0.00 0.00 2.08
168 169 4.973168 TGTTTCAGCTTCAACCACTCTAT 58.027 39.130 2.91 0.00 0.00 1.98
169 170 4.415881 TGTTTCAGCTTCAACCACTCTA 57.584 40.909 2.91 0.00 0.00 2.43
170 171 3.281727 TGTTTCAGCTTCAACCACTCT 57.718 42.857 2.91 0.00 0.00 3.24
171 172 4.574599 AATGTTTCAGCTTCAACCACTC 57.425 40.909 2.91 0.00 0.00 3.51
172 173 5.594317 ACTAAATGTTTCAGCTTCAACCACT 59.406 36.000 2.91 0.00 0.00 4.00
173 174 5.831997 ACTAAATGTTTCAGCTTCAACCAC 58.168 37.500 2.91 0.00 0.00 4.16
174 175 6.463995 AACTAAATGTTTCAGCTTCAACCA 57.536 33.333 2.91 0.00 34.84 3.67
175 176 6.978080 TCAAACTAAATGTTTCAGCTTCAACC 59.022 34.615 2.91 0.00 46.11 3.77
176 177 7.915397 TCTCAAACTAAATGTTTCAGCTTCAAC 59.085 33.333 0.00 0.00 46.11 3.18
177 178 7.995289 TCTCAAACTAAATGTTTCAGCTTCAA 58.005 30.769 0.00 0.00 46.11 2.69
178 179 7.566760 TCTCAAACTAAATGTTTCAGCTTCA 57.433 32.000 0.00 0.00 46.11 3.02
179 180 6.580416 GCTCTCAAACTAAATGTTTCAGCTTC 59.420 38.462 0.00 0.00 46.11 3.86
180 181 6.442112 GCTCTCAAACTAAATGTTTCAGCTT 58.558 36.000 0.00 0.00 46.11 3.74
181 182 5.048434 GGCTCTCAAACTAAATGTTTCAGCT 60.048 40.000 12.23 0.00 46.11 4.24
182 183 5.157067 GGCTCTCAAACTAAATGTTTCAGC 58.843 41.667 0.00 0.00 46.11 4.26
183 184 6.317789 TGGCTCTCAAACTAAATGTTTCAG 57.682 37.500 0.00 0.00 46.11 3.02
184 185 6.899393 ATGGCTCTCAAACTAAATGTTTCA 57.101 33.333 0.00 0.00 46.11 2.69
185 186 9.860898 AAATATGGCTCTCAAACTAAATGTTTC 57.139 29.630 0.00 0.00 46.11 2.78
187 188 9.247861 AGAAATATGGCTCTCAAACTAAATGTT 57.752 29.630 0.00 0.00 41.29 2.71
188 189 8.814038 AGAAATATGGCTCTCAAACTAAATGT 57.186 30.769 0.00 0.00 0.00 2.71
193 194 9.733556 TGTAAAAGAAATATGGCTCTCAAACTA 57.266 29.630 0.00 0.00 0.00 2.24
194 195 8.635765 TGTAAAAGAAATATGGCTCTCAAACT 57.364 30.769 0.00 0.00 0.00 2.66
195 196 7.970614 CCTGTAAAAGAAATATGGCTCTCAAAC 59.029 37.037 0.00 0.00 0.00 2.93
196 197 7.888021 TCCTGTAAAAGAAATATGGCTCTCAAA 59.112 33.333 0.00 0.00 0.00 2.69
197 198 7.402054 TCCTGTAAAAGAAATATGGCTCTCAA 58.598 34.615 0.00 0.00 0.00 3.02
198 199 6.957631 TCCTGTAAAAGAAATATGGCTCTCA 58.042 36.000 0.00 0.00 0.00 3.27
199 200 7.500559 ACATCCTGTAAAAGAAATATGGCTCTC 59.499 37.037 0.00 0.00 0.00 3.20
200 201 7.349598 ACATCCTGTAAAAGAAATATGGCTCT 58.650 34.615 0.00 0.00 0.00 4.09
201 202 7.573968 ACATCCTGTAAAAGAAATATGGCTC 57.426 36.000 0.00 0.00 0.00 4.70
202 203 7.615365 TCAACATCCTGTAAAAGAAATATGGCT 59.385 33.333 0.00 0.00 0.00 4.75
203 204 7.771183 TCAACATCCTGTAAAAGAAATATGGC 58.229 34.615 0.00 0.00 0.00 4.40
207 208 9.120538 GGCTATCAACATCCTGTAAAAGAAATA 57.879 33.333 0.00 0.00 0.00 1.40
208 209 7.201732 CGGCTATCAACATCCTGTAAAAGAAAT 60.202 37.037 0.00 0.00 0.00 2.17
209 210 6.093495 CGGCTATCAACATCCTGTAAAAGAAA 59.907 38.462 0.00 0.00 0.00 2.52
210 211 5.584649 CGGCTATCAACATCCTGTAAAAGAA 59.415 40.000 0.00 0.00 0.00 2.52
211 212 5.116180 CGGCTATCAACATCCTGTAAAAGA 58.884 41.667 0.00 0.00 0.00 2.52
212 213 4.260784 GCGGCTATCAACATCCTGTAAAAG 60.261 45.833 0.00 0.00 0.00 2.27
213 214 3.625764 GCGGCTATCAACATCCTGTAAAA 59.374 43.478 0.00 0.00 0.00 1.52
214 215 3.202906 GCGGCTATCAACATCCTGTAAA 58.797 45.455 0.00 0.00 0.00 2.01
215 216 2.169561 TGCGGCTATCAACATCCTGTAA 59.830 45.455 0.00 0.00 0.00 2.41
216 217 1.760029 TGCGGCTATCAACATCCTGTA 59.240 47.619 0.00 0.00 0.00 2.74
217 218 0.541392 TGCGGCTATCAACATCCTGT 59.459 50.000 0.00 0.00 0.00 4.00
218 219 1.888215 ATGCGGCTATCAACATCCTG 58.112 50.000 0.00 0.00 0.00 3.86
219 220 2.645838 AATGCGGCTATCAACATCCT 57.354 45.000 0.00 0.00 0.00 3.24
220 221 3.403038 AGTAATGCGGCTATCAACATCC 58.597 45.455 0.00 0.00 0.00 3.51
221 222 6.727824 ATTAGTAATGCGGCTATCAACATC 57.272 37.500 0.00 0.00 0.00 3.06
222 223 7.119262 GGTAATTAGTAATGCGGCTATCAACAT 59.881 37.037 0.00 0.00 0.00 2.71
223 224 6.425721 GGTAATTAGTAATGCGGCTATCAACA 59.574 38.462 0.00 0.00 0.00 3.33
224 225 6.649557 AGGTAATTAGTAATGCGGCTATCAAC 59.350 38.462 0.00 0.00 0.00 3.18
225 226 6.649141 CAGGTAATTAGTAATGCGGCTATCAA 59.351 38.462 0.00 0.00 0.00 2.57
226 227 6.014925 TCAGGTAATTAGTAATGCGGCTATCA 60.015 38.462 0.00 0.00 0.00 2.15
227 228 6.395629 TCAGGTAATTAGTAATGCGGCTATC 58.604 40.000 0.00 0.00 0.00 2.08
228 229 6.354794 TCAGGTAATTAGTAATGCGGCTAT 57.645 37.500 0.00 0.00 0.00 2.97
229 230 5.794726 TCAGGTAATTAGTAATGCGGCTA 57.205 39.130 0.00 0.00 0.00 3.93
230 231 4.682778 TCAGGTAATTAGTAATGCGGCT 57.317 40.909 0.00 0.00 0.00 5.52
231 232 5.054477 TCTTCAGGTAATTAGTAATGCGGC 58.946 41.667 0.00 0.00 0.00 6.53
232 233 5.696724 CCTCTTCAGGTAATTAGTAATGCGG 59.303 44.000 0.00 0.00 34.60 5.69
233 234 6.771188 CCTCTTCAGGTAATTAGTAATGCG 57.229 41.667 0.00 0.00 34.60 4.73
247 248 3.740764 GCTATCTTGCTCACCTCTTCAGG 60.741 52.174 0.00 0.00 46.87 3.86
248 249 3.118847 TGCTATCTTGCTCACCTCTTCAG 60.119 47.826 0.00 0.00 0.00 3.02
249 250 2.833943 TGCTATCTTGCTCACCTCTTCA 59.166 45.455 0.00 0.00 0.00 3.02
250 251 3.456280 CTGCTATCTTGCTCACCTCTTC 58.544 50.000 0.00 0.00 0.00 2.87
251 252 2.419851 GCTGCTATCTTGCTCACCTCTT 60.420 50.000 0.00 0.00 0.00 2.85
252 253 1.138661 GCTGCTATCTTGCTCACCTCT 59.861 52.381 0.00 0.00 0.00 3.69
253 254 1.580815 GCTGCTATCTTGCTCACCTC 58.419 55.000 0.00 0.00 0.00 3.85
254 255 0.179089 CGCTGCTATCTTGCTCACCT 60.179 55.000 0.00 0.00 0.00 4.00
255 256 0.179100 TCGCTGCTATCTTGCTCACC 60.179 55.000 0.00 0.00 0.00 4.02
256 257 1.645034 TTCGCTGCTATCTTGCTCAC 58.355 50.000 0.00 0.00 0.00 3.51
257 258 2.609427 ATTCGCTGCTATCTTGCTCA 57.391 45.000 0.00 0.00 0.00 4.26
258 259 3.906998 TCTATTCGCTGCTATCTTGCTC 58.093 45.455 0.00 0.00 0.00 4.26
259 260 4.327982 TTCTATTCGCTGCTATCTTGCT 57.672 40.909 0.00 0.00 0.00 3.91
260 261 5.380651 CATTTCTATTCGCTGCTATCTTGC 58.619 41.667 0.00 0.00 0.00 4.01
261 262 5.049886 TGCATTTCTATTCGCTGCTATCTTG 60.050 40.000 0.00 0.00 34.02 3.02
262 263 5.059161 TGCATTTCTATTCGCTGCTATCTT 58.941 37.500 0.00 0.00 34.02 2.40
263 264 4.635223 TGCATTTCTATTCGCTGCTATCT 58.365 39.130 0.00 0.00 34.02 1.98
264 265 4.997905 TGCATTTCTATTCGCTGCTATC 57.002 40.909 0.00 0.00 34.02 2.08
265 266 5.335426 CCAATGCATTTCTATTCGCTGCTAT 60.335 40.000 9.83 0.00 34.02 2.97
266 267 4.023792 CCAATGCATTTCTATTCGCTGCTA 60.024 41.667 9.83 0.00 34.02 3.49
267 268 3.243301 CCAATGCATTTCTATTCGCTGCT 60.243 43.478 9.83 0.00 34.02 4.24
268 269 3.047796 CCAATGCATTTCTATTCGCTGC 58.952 45.455 9.83 0.00 0.00 5.25
269 270 3.047796 GCCAATGCATTTCTATTCGCTG 58.952 45.455 9.83 0.00 37.47 5.18
270 271 2.035066 GGCCAATGCATTTCTATTCGCT 59.965 45.455 9.83 0.00 40.13 4.93
271 272 2.223782 TGGCCAATGCATTTCTATTCGC 60.224 45.455 9.83 2.98 40.13 4.70
272 273 3.067180 AGTGGCCAATGCATTTCTATTCG 59.933 43.478 7.24 0.00 40.13 3.34
273 274 4.365723 CAGTGGCCAATGCATTTCTATTC 58.634 43.478 21.78 0.00 40.13 1.75
274 275 3.133362 CCAGTGGCCAATGCATTTCTATT 59.867 43.478 27.54 0.00 40.13 1.73
275 276 2.696707 CCAGTGGCCAATGCATTTCTAT 59.303 45.455 27.54 0.00 40.13 1.98
276 277 2.101783 CCAGTGGCCAATGCATTTCTA 58.898 47.619 27.54 0.00 40.13 2.10
277 278 0.899720 CCAGTGGCCAATGCATTTCT 59.100 50.000 27.54 4.91 40.13 2.52
278 279 0.741927 GCCAGTGGCCAATGCATTTC 60.742 55.000 27.54 9.40 44.06 2.17
279 280 1.297364 GCCAGTGGCCAATGCATTT 59.703 52.632 27.54 0.00 44.06 2.32
280 281 2.983791 GCCAGTGGCCAATGCATT 59.016 55.556 27.54 5.99 44.06 3.56
300 301 1.017177 TTAATGGTCAGACGTGCCGC 61.017 55.000 0.00 0.00 0.00 6.53
301 302 1.127951 GTTTAATGGTCAGACGTGCCG 59.872 52.381 0.00 0.00 0.00 5.69
302 303 2.147958 TGTTTAATGGTCAGACGTGCC 58.852 47.619 0.00 0.00 0.00 5.01
303 304 3.064207 TCTGTTTAATGGTCAGACGTGC 58.936 45.455 0.00 0.00 34.00 5.34
304 305 5.867174 TGTATCTGTTTAATGGTCAGACGTG 59.133 40.000 0.00 0.00 40.29 4.49
305 306 6.032956 TGTATCTGTTTAATGGTCAGACGT 57.967 37.500 0.00 0.00 40.29 4.34
306 307 7.401860 CAATGTATCTGTTTAATGGTCAGACG 58.598 38.462 0.00 0.00 40.29 4.18
307 308 7.679638 GCCAATGTATCTGTTTAATGGTCAGAC 60.680 40.741 0.00 0.00 40.29 3.51
308 309 6.318648 GCCAATGTATCTGTTTAATGGTCAGA 59.681 38.462 0.00 0.00 41.43 3.27
309 310 6.319658 AGCCAATGTATCTGTTTAATGGTCAG 59.680 38.462 0.00 0.00 0.00 3.51
310 311 6.186957 AGCCAATGTATCTGTTTAATGGTCA 58.813 36.000 0.00 0.00 0.00 4.02
311 312 6.318648 TGAGCCAATGTATCTGTTTAATGGTC 59.681 38.462 0.00 0.00 0.00 4.02
312 313 6.186957 TGAGCCAATGTATCTGTTTAATGGT 58.813 36.000 0.00 0.00 0.00 3.55
313 314 6.698008 TGAGCCAATGTATCTGTTTAATGG 57.302 37.500 0.00 0.00 0.00 3.16
314 315 8.627403 AGATTGAGCCAATGTATCTGTTTAATG 58.373 33.333 5.31 0.00 33.90 1.90
315 316 8.757982 AGATTGAGCCAATGTATCTGTTTAAT 57.242 30.769 5.31 0.00 33.90 1.40
316 317 8.579850 AAGATTGAGCCAATGTATCTGTTTAA 57.420 30.769 5.31 0.00 33.90 1.52
317 318 7.828717 TGAAGATTGAGCCAATGTATCTGTTTA 59.171 33.333 5.31 0.00 33.90 2.01
318 319 6.660521 TGAAGATTGAGCCAATGTATCTGTTT 59.339 34.615 5.31 0.00 33.90 2.83
319 320 6.182627 TGAAGATTGAGCCAATGTATCTGTT 58.817 36.000 5.31 0.00 33.90 3.16
320 321 5.748402 TGAAGATTGAGCCAATGTATCTGT 58.252 37.500 5.31 0.00 33.90 3.41
321 322 5.277876 GCTGAAGATTGAGCCAATGTATCTG 60.278 44.000 5.31 7.14 33.90 2.90
322 323 4.820716 GCTGAAGATTGAGCCAATGTATCT 59.179 41.667 5.31 0.00 33.90 1.98
323 324 4.319333 CGCTGAAGATTGAGCCAATGTATC 60.319 45.833 5.31 3.95 33.66 2.24
324 325 3.562973 CGCTGAAGATTGAGCCAATGTAT 59.437 43.478 5.31 0.00 33.66 2.29
325 326 2.938451 CGCTGAAGATTGAGCCAATGTA 59.062 45.455 5.31 0.00 33.66 2.29
326 327 1.741706 CGCTGAAGATTGAGCCAATGT 59.258 47.619 5.31 0.00 33.66 2.71
327 328 1.533338 GCGCTGAAGATTGAGCCAATG 60.533 52.381 0.00 0.00 33.66 2.82
328 329 0.737219 GCGCTGAAGATTGAGCCAAT 59.263 50.000 0.00 0.67 33.66 3.16
329 330 0.606130 TGCGCTGAAGATTGAGCCAA 60.606 50.000 9.73 0.00 33.66 4.52
330 331 1.003476 TGCGCTGAAGATTGAGCCA 60.003 52.632 9.73 0.00 33.66 4.75
331 332 1.720301 CTGCGCTGAAGATTGAGCC 59.280 57.895 9.73 0.00 33.66 4.70
332 333 1.062206 GCTGCGCTGAAGATTGAGC 59.938 57.895 19.32 6.65 33.89 4.26
333 334 0.800631 TTGCTGCGCTGAAGATTGAG 59.199 50.000 19.32 0.00 0.00 3.02
334 335 0.800631 CTTGCTGCGCTGAAGATTGA 59.199 50.000 19.32 0.00 0.00 2.57
335 336 0.179171 CCTTGCTGCGCTGAAGATTG 60.179 55.000 19.32 0.00 0.00 2.67
336 337 1.930908 GCCTTGCTGCGCTGAAGATT 61.931 55.000 19.32 0.00 0.00 2.40
337 338 2.404995 GCCTTGCTGCGCTGAAGAT 61.405 57.895 19.32 0.00 0.00 2.40
338 339 3.052082 GCCTTGCTGCGCTGAAGA 61.052 61.111 19.32 1.65 0.00 2.87
339 340 3.036783 GAGCCTTGCTGCGCTGAAG 62.037 63.158 19.32 16.51 39.88 3.02
340 341 2.171209 TAGAGCCTTGCTGCGCTGAA 62.171 55.000 19.32 4.19 41.65 3.02
341 342 2.171209 TTAGAGCCTTGCTGCGCTGA 62.171 55.000 19.32 0.27 41.65 4.26
342 343 1.300971 TTTAGAGCCTTGCTGCGCTG 61.301 55.000 9.73 10.04 41.65 5.18
343 344 0.606401 TTTTAGAGCCTTGCTGCGCT 60.606 50.000 9.73 0.02 43.95 5.92
344 345 0.453390 ATTTTAGAGCCTTGCTGCGC 59.547 50.000 0.00 0.00 39.88 6.09
345 346 1.796617 GCATTTTAGAGCCTTGCTGCG 60.797 52.381 0.00 0.00 39.88 5.18
346 347 1.203052 TGCATTTTAGAGCCTTGCTGC 59.797 47.619 0.00 0.00 39.88 5.25
347 348 3.795623 ATGCATTTTAGAGCCTTGCTG 57.204 42.857 0.00 0.00 39.88 4.41
348 349 3.118884 CCAATGCATTTTAGAGCCTTGCT 60.119 43.478 9.83 0.00 43.88 3.91
349 350 3.192466 CCAATGCATTTTAGAGCCTTGC 58.808 45.455 9.83 0.00 35.79 4.01
350 351 3.118884 AGCCAATGCATTTTAGAGCCTTG 60.119 43.478 9.83 0.00 41.13 3.61
351 352 3.102204 AGCCAATGCATTTTAGAGCCTT 58.898 40.909 9.83 0.00 41.13 4.35
352 353 2.692041 GAGCCAATGCATTTTAGAGCCT 59.308 45.455 9.83 0.00 41.13 4.58
353 354 2.428171 TGAGCCAATGCATTTTAGAGCC 59.572 45.455 9.83 3.67 41.13 4.70
354 355 3.788333 TGAGCCAATGCATTTTAGAGC 57.212 42.857 9.83 8.00 41.13 4.09
355 356 5.571784 TCTTGAGCCAATGCATTTTAGAG 57.428 39.130 9.83 3.83 41.13 2.43
356 357 5.163488 CCATCTTGAGCCAATGCATTTTAGA 60.163 40.000 9.83 6.76 41.13 2.10
357 358 5.047847 CCATCTTGAGCCAATGCATTTTAG 58.952 41.667 9.83 2.78 41.13 1.85
358 359 4.710865 TCCATCTTGAGCCAATGCATTTTA 59.289 37.500 9.83 0.00 41.13 1.52
359 360 3.516300 TCCATCTTGAGCCAATGCATTTT 59.484 39.130 9.83 0.00 41.13 1.82
360 361 3.101437 TCCATCTTGAGCCAATGCATTT 58.899 40.909 9.83 0.00 41.13 2.32
361 362 2.742348 TCCATCTTGAGCCAATGCATT 58.258 42.857 5.99 5.99 41.13 3.56
362 363 2.447408 TCCATCTTGAGCCAATGCAT 57.553 45.000 0.00 0.00 41.13 3.96
363 364 2.219080 TTCCATCTTGAGCCAATGCA 57.781 45.000 0.00 0.00 41.13 3.96
364 365 4.924305 TTATTCCATCTTGAGCCAATGC 57.076 40.909 0.00 0.00 37.95 3.56
365 366 6.444633 GTCATTATTCCATCTTGAGCCAATG 58.555 40.000 0.00 0.00 0.00 2.82
366 367 5.537674 GGTCATTATTCCATCTTGAGCCAAT 59.462 40.000 0.00 0.00 0.00 3.16
367 368 4.889409 GGTCATTATTCCATCTTGAGCCAA 59.111 41.667 0.00 0.00 0.00 4.52
368 369 4.079844 TGGTCATTATTCCATCTTGAGCCA 60.080 41.667 0.00 0.00 34.73 4.75
369 370 4.464008 TGGTCATTATTCCATCTTGAGCC 58.536 43.478 0.00 0.00 34.73 4.70
370 371 6.455360 TTTGGTCATTATTCCATCTTGAGC 57.545 37.500 0.00 0.00 35.85 4.26
371 372 8.284945 TCTTTTGGTCATTATTCCATCTTGAG 57.715 34.615 0.00 0.00 33.50 3.02
372 373 8.827832 ATCTTTTGGTCATTATTCCATCTTGA 57.172 30.769 0.00 0.00 33.50 3.02
373 374 9.880157 AAATCTTTTGGTCATTATTCCATCTTG 57.120 29.630 0.00 0.00 33.50 3.02
382 383 9.492730 AGGGATGTAAAATCTTTTGGTCATTAT 57.507 29.630 0.00 0.00 0.00 1.28
383 384 8.893563 AGGGATGTAAAATCTTTTGGTCATTA 57.106 30.769 0.00 0.00 0.00 1.90
384 385 7.797121 AGGGATGTAAAATCTTTTGGTCATT 57.203 32.000 0.00 0.00 0.00 2.57
385 386 7.893302 TGTAGGGATGTAAAATCTTTTGGTCAT 59.107 33.333 0.00 1.67 0.00 3.06
386 387 7.235079 TGTAGGGATGTAAAATCTTTTGGTCA 58.765 34.615 0.00 0.00 0.00 4.02
387 388 7.610305 TCTGTAGGGATGTAAAATCTTTTGGTC 59.390 37.037 0.00 0.00 0.00 4.02
388 389 7.466804 TCTGTAGGGATGTAAAATCTTTTGGT 58.533 34.615 0.00 0.00 0.00 3.67
389 390 7.938140 TCTGTAGGGATGTAAAATCTTTTGG 57.062 36.000 0.00 0.00 0.00 3.28
390 391 9.231297 TCTTCTGTAGGGATGTAAAATCTTTTG 57.769 33.333 0.00 0.00 0.00 2.44
391 392 9.807921 TTCTTCTGTAGGGATGTAAAATCTTTT 57.192 29.630 0.00 0.00 0.00 2.27
392 393 9.232473 GTTCTTCTGTAGGGATGTAAAATCTTT 57.768 33.333 0.00 0.00 0.00 2.52
393 394 8.383175 TGTTCTTCTGTAGGGATGTAAAATCTT 58.617 33.333 0.00 0.00 0.00 2.40
394 395 7.918076 TGTTCTTCTGTAGGGATGTAAAATCT 58.082 34.615 0.00 0.00 0.00 2.40
395 396 8.738645 ATGTTCTTCTGTAGGGATGTAAAATC 57.261 34.615 0.00 0.00 0.00 2.17
396 397 8.960591 CAATGTTCTTCTGTAGGGATGTAAAAT 58.039 33.333 0.00 0.00 0.00 1.82
397 398 7.942341 ACAATGTTCTTCTGTAGGGATGTAAAA 59.058 33.333 0.00 0.00 0.00 1.52
398 399 7.458397 ACAATGTTCTTCTGTAGGGATGTAAA 58.542 34.615 0.00 0.00 0.00 2.01
399 400 7.016153 ACAATGTTCTTCTGTAGGGATGTAA 57.984 36.000 0.00 0.00 0.00 2.41
400 401 6.620877 ACAATGTTCTTCTGTAGGGATGTA 57.379 37.500 0.00 0.00 0.00 2.29
401 402 5.505181 ACAATGTTCTTCTGTAGGGATGT 57.495 39.130 0.00 0.00 0.00 3.06
402 403 5.525378 GCTACAATGTTCTTCTGTAGGGATG 59.475 44.000 9.75 0.00 41.79 3.51
403 404 5.189736 TGCTACAATGTTCTTCTGTAGGGAT 59.810 40.000 9.75 0.00 41.79 3.85
404 405 4.530553 TGCTACAATGTTCTTCTGTAGGGA 59.469 41.667 9.75 0.00 41.79 4.20
405 406 4.832248 TGCTACAATGTTCTTCTGTAGGG 58.168 43.478 9.75 0.00 41.79 3.53
406 407 5.352569 CCTTGCTACAATGTTCTTCTGTAGG 59.647 44.000 9.75 0.00 41.79 3.18
407 408 5.163814 GCCTTGCTACAATGTTCTTCTGTAG 60.164 44.000 0.00 4.47 43.51 2.74
408 409 4.695455 GCCTTGCTACAATGTTCTTCTGTA 59.305 41.667 0.00 0.00 0.00 2.74
409 410 3.503748 GCCTTGCTACAATGTTCTTCTGT 59.496 43.478 0.00 0.00 0.00 3.41
410 411 3.425359 CGCCTTGCTACAATGTTCTTCTG 60.425 47.826 0.00 0.00 0.00 3.02
411 412 2.744202 CGCCTTGCTACAATGTTCTTCT 59.256 45.455 0.00 0.00 0.00 2.85
412 413 2.729156 GCGCCTTGCTACAATGTTCTTC 60.729 50.000 0.00 0.00 41.73 2.87
413 414 1.200020 GCGCCTTGCTACAATGTTCTT 59.800 47.619 0.00 0.00 41.73 2.52
414 415 0.804989 GCGCCTTGCTACAATGTTCT 59.195 50.000 0.00 0.00 41.73 3.01
415 416 0.521242 CGCGCCTTGCTACAATGTTC 60.521 55.000 0.00 0.00 43.27 3.18
416 417 1.501741 CGCGCCTTGCTACAATGTT 59.498 52.632 0.00 0.00 43.27 2.71
417 418 3.039202 GCGCGCCTTGCTACAATGT 62.039 57.895 23.24 0.00 43.27 2.71
418 419 2.277501 GCGCGCCTTGCTACAATG 60.278 61.111 23.24 0.00 43.27 2.82
419 420 3.864686 CGCGCGCCTTGCTACAAT 61.865 61.111 27.72 0.00 43.27 2.71
420 421 3.918181 TACGCGCGCCTTGCTACAA 62.918 57.895 32.58 0.00 43.27 2.41
421 422 3.709880 ATACGCGCGCCTTGCTACA 62.710 57.895 32.58 3.85 43.27 2.74
422 423 2.928732 GATACGCGCGCCTTGCTAC 61.929 63.158 32.58 9.05 43.27 3.58
423 424 2.657296 GATACGCGCGCCTTGCTA 60.657 61.111 32.58 14.38 43.27 3.49
426 427 4.891727 AGGGATACGCGCGCCTTG 62.892 66.667 32.58 14.78 37.60 3.61
427 428 4.587189 GAGGGATACGCGCGCCTT 62.587 66.667 32.58 20.04 37.60 4.35
429 430 3.612371 CTAGAGGGATACGCGCGCC 62.612 68.421 32.58 23.13 37.60 6.53
430 431 2.126812 CTAGAGGGATACGCGCGC 60.127 66.667 32.58 23.91 37.60 6.86
431 432 1.082038 CACTAGAGGGATACGCGCG 60.082 63.158 30.96 30.96 37.60 6.86
432 433 1.371881 GCACTAGAGGGATACGCGC 60.372 63.158 5.73 0.00 37.60 6.86
433 434 1.082038 CGCACTAGAGGGATACGCG 60.082 63.158 3.53 3.53 34.89 6.01
434 435 1.233019 TACGCACTAGAGGGATACGC 58.767 55.000 11.12 0.00 37.60 4.42
435 436 2.414293 GCATACGCACTAGAGGGATACG 60.414 54.545 11.12 0.00 38.36 3.06
436 437 2.414293 CGCATACGCACTAGAGGGATAC 60.414 54.545 11.12 0.00 38.40 2.24
437 438 1.810755 CGCATACGCACTAGAGGGATA 59.189 52.381 11.12 1.13 38.40 2.59
438 439 0.598562 CGCATACGCACTAGAGGGAT 59.401 55.000 11.12 0.00 38.40 3.85
439 440 0.750546 ACGCATACGCACTAGAGGGA 60.751 55.000 11.12 0.00 45.53 4.20
440 441 0.595053 CACGCATACGCACTAGAGGG 60.595 60.000 0.00 0.00 45.53 4.30
441 442 1.209275 GCACGCATACGCACTAGAGG 61.209 60.000 0.00 0.00 45.53 3.69
442 443 0.248661 AGCACGCATACGCACTAGAG 60.249 55.000 0.00 0.00 45.53 2.43
443 444 0.172578 AAGCACGCATACGCACTAGA 59.827 50.000 0.00 0.00 45.53 2.43
444 445 0.572590 GAAGCACGCATACGCACTAG 59.427 55.000 0.00 0.00 45.53 2.57
445 446 0.804544 GGAAGCACGCATACGCACTA 60.805 55.000 0.00 0.00 45.53 2.74
446 447 2.100631 GGAAGCACGCATACGCACT 61.101 57.895 0.00 0.00 45.53 4.40
447 448 2.387445 TGGAAGCACGCATACGCAC 61.387 57.895 0.00 0.00 45.53 5.34
448 449 2.047750 TGGAAGCACGCATACGCA 60.048 55.556 0.00 0.00 45.53 5.24
449 450 1.906994 TTGTGGAAGCACGCATACGC 61.907 55.000 0.00 0.00 45.53 4.42
450 451 5.531490 CTTCTTGTGGAAGCACGCATACG 62.531 52.174 0.00 0.00 43.88 3.06
451 452 1.438651 TCTTGTGGAAGCACGCATAC 58.561 50.000 0.00 0.00 0.00 2.39
452 453 2.076100 CTTCTTGTGGAAGCACGCATA 58.924 47.619 0.00 0.00 43.88 3.14
453 454 0.877071 CTTCTTGTGGAAGCACGCAT 59.123 50.000 0.00 0.00 43.88 4.73
454 455 2.320215 CTTCTTGTGGAAGCACGCA 58.680 52.632 0.00 0.00 43.88 5.24
487 488 2.223479 ACACATGTGTTTCACTTTCGGC 60.223 45.455 25.76 0.00 41.83 5.54
490 491 4.423732 AAGCACACATGTGTTTCACTTTC 58.576 39.130 28.64 10.13 44.30 2.62
545 547 6.919721 TCAAAATTGTACTAAATGGTGCTCC 58.080 36.000 0.00 0.00 0.00 4.70
546 548 8.296713 TCTTCAAAATTGTACTAAATGGTGCTC 58.703 33.333 0.00 0.00 0.00 4.26
563 566 5.186996 ACAGTTCGCATGTTCTTCAAAAT 57.813 34.783 0.00 0.00 0.00 1.82
567 570 3.990092 ACTACAGTTCGCATGTTCTTCA 58.010 40.909 0.00 0.00 32.02 3.02
578 581 5.168569 TCTATGCTCCAAAACTACAGTTCG 58.831 41.667 0.00 0.00 37.25 3.95
582 585 6.709643 CGAAATCTATGCTCCAAAACTACAG 58.290 40.000 0.00 0.00 0.00 2.74
584 587 5.502606 GCGAAATCTATGCTCCAAAACTAC 58.497 41.667 0.00 0.00 0.00 2.73
588 591 3.351740 TGGCGAAATCTATGCTCCAAAA 58.648 40.909 0.00 0.00 0.00 2.44
590 593 2.708216 TGGCGAAATCTATGCTCCAA 57.292 45.000 0.00 0.00 0.00 3.53
615 618 8.392372 AGATCACATGTTCATAGATTTCCATG 57.608 34.615 0.00 0.00 36.60 3.66
650 657 2.028130 TGCATTTCCCACGTCAAGTTT 58.972 42.857 0.00 0.00 0.00 2.66
652 659 1.686355 TTGCATTTCCCACGTCAAGT 58.314 45.000 0.00 0.00 0.00 3.16
662 669 7.224557 ACAAACTGTTTTCACTATTGCATTTCC 59.775 33.333 2.41 0.00 0.00 3.13
672 679 9.279904 CGTTTAAATCACAAACTGTTTTCACTA 57.720 29.630 2.41 0.00 34.43 2.74
673 680 7.201401 GCGTTTAAATCACAAACTGTTTTCACT 60.201 33.333 2.41 0.00 34.43 3.41
682 689 5.195001 ACCATGCGTTTAAATCACAAACT 57.805 34.783 0.00 0.00 34.43 2.66
684 691 4.677378 CGAACCATGCGTTTAAATCACAAA 59.323 37.500 0.00 0.00 33.74 2.83
689 696 4.593597 TCTCGAACCATGCGTTTAAATC 57.406 40.909 0.00 0.00 33.74 2.17
698 705 7.195646 TGAAAATGATTTATCTCGAACCATGC 58.804 34.615 0.00 0.00 0.00 4.06
746 753 6.173339 CAGATGAGTGGGTTATGTAGTGTTT 58.827 40.000 0.00 0.00 0.00 2.83
754 761 8.400947 CAATTAGAAACAGATGAGTGGGTTATG 58.599 37.037 0.00 0.00 0.00 1.90
758 765 4.702131 GCAATTAGAAACAGATGAGTGGGT 59.298 41.667 0.00 0.00 0.00 4.51
770 777 5.587289 TGACAAGTTGTGGCAATTAGAAAC 58.413 37.500 14.57 0.00 44.65 2.78
785 884 1.410004 TCCTCTGACCGTGACAAGTT 58.590 50.000 0.00 0.00 0.00 2.66
816 915 3.903714 TCTTCTCTGATGGTTGTCCTCAA 59.096 43.478 0.00 0.00 34.23 3.02
833 932 4.039852 GTCACTTCCACCTTCTCTTCTTCT 59.960 45.833 0.00 0.00 0.00 2.85
834 933 4.202264 TGTCACTTCCACCTTCTCTTCTTC 60.202 45.833 0.00 0.00 0.00 2.87
835 934 3.711704 TGTCACTTCCACCTTCTCTTCTT 59.288 43.478 0.00 0.00 0.00 2.52
862 964 3.620488 GTGGGCTGGATCATACAGAAAA 58.380 45.455 0.00 0.00 38.20 2.29
898 1000 2.338381 GGCTTATCCGCCTCGTCTA 58.662 57.895 0.00 0.00 46.63 2.59
899 1001 3.130227 GGCTTATCCGCCTCGTCT 58.870 61.111 0.00 0.00 46.63 4.18
1376 1479 4.088351 TGATGGAGCCCGGGGAGA 62.088 66.667 25.28 0.00 0.00 3.71
1500 1603 1.145759 GCGAGTTATAGCAGCACGCA 61.146 55.000 0.00 0.00 46.13 5.24
1524 1627 3.914605 CTGGCGCGTGTAGCTGTCA 62.915 63.158 8.43 0.00 45.59 3.58
1601 1704 1.009078 CGTATACGTCCCGACAGTCA 58.991 55.000 17.16 0.00 34.11 3.41
1727 1830 2.607180 CGACAATACGCATTGATGACCA 59.393 45.455 15.25 0.00 43.67 4.02
1818 1921 5.529581 TGATCAATGCTCCATAAGTACGA 57.470 39.130 0.00 0.00 0.00 3.43
1851 1954 3.326006 CAGCCTCTATCTGCCCAATCTTA 59.674 47.826 0.00 0.00 0.00 2.10
2122 2225 5.221641 TGGTGTAGCTGACATAGTTTGACTT 60.222 40.000 0.00 0.00 41.14 3.01
2262 2365 2.092429 GCTCCCATTCTTGATGTACCCA 60.092 50.000 0.00 0.00 33.71 4.51
2289 2392 0.534203 TTTTGAACCGCTCGGCTTCT 60.534 50.000 8.41 0.00 39.32 2.85
2483 2586 0.388659 CTCCTCTGATCTGCCTTCCG 59.611 60.000 0.00 0.00 0.00 4.30
2577 2680 7.336931 TGTTTTCTTTTATCTGTATGGAGGCTC 59.663 37.037 5.78 5.78 0.00 4.70
2613 2716 5.335191 GCCTGACAAACCTTACATTCTTCAG 60.335 44.000 0.00 0.00 0.00 3.02
2661 2764 3.521937 AGGATTCGGTCAATTCCCTTACA 59.478 43.478 0.00 0.00 0.00 2.41
2725 2828 0.539438 TCAACCCTGGACATGGCAAC 60.539 55.000 0.00 0.00 0.00 4.17
2741 2844 0.468226 GGATCCCCGTAGCACATCAA 59.532 55.000 0.00 0.00 0.00 2.57
2777 2880 2.454832 CTTTCTGCGGTCCTGCCTCA 62.455 60.000 0.00 0.00 34.25 3.86
2797 2900 1.603678 CCAAATCAGTGTTGTGCCAGC 60.604 52.381 0.00 0.00 0.00 4.85
2822 2925 2.279517 GCGGCATCGGACTGGTAG 60.280 66.667 0.00 0.00 36.79 3.18
2830 2933 3.041940 GGTATTCGGCGGCATCGG 61.042 66.667 10.53 0.00 36.79 4.18
2907 3010 3.134623 TCAGATGTTCCAGTCAACACAGT 59.865 43.478 0.00 0.00 39.09 3.55
2908 3011 3.732212 TCAGATGTTCCAGTCAACACAG 58.268 45.455 0.00 0.00 39.09 3.66
2909 3012 3.836365 TCAGATGTTCCAGTCAACACA 57.164 42.857 0.00 0.00 39.09 3.72
2991 3096 9.838339 AGCCCCTCATCTTATAATAATTAATCG 57.162 33.333 0.00 0.00 0.00 3.34
3000 3105 3.659686 AGGCAAGCCCCTCATCTTATAAT 59.340 43.478 7.62 0.00 36.58 1.28
3005 3110 1.527457 ATAGGCAAGCCCCTCATCTT 58.473 50.000 7.62 0.00 36.41 2.40
3080 3185 3.384467 CCAGGTGCCGAATATCCAAATTT 59.616 43.478 0.00 0.00 0.00 1.82
3219 3325 6.315891 GGGCATTTATACGGTGTTGTTAGTAA 59.684 38.462 0.00 0.00 0.00 2.24
3339 3447 2.868899 CCAGAGGAAGAAACCAAAGCT 58.131 47.619 0.00 0.00 0.00 3.74
3463 3571 5.815740 TGTCAAGAACTAACAGAAAGACCAC 59.184 40.000 0.00 0.00 0.00 4.16
3529 3637 9.740239 CCATTCATGATTACCAAAATCAACTAG 57.260 33.333 0.00 0.00 39.75 2.57
3537 3645 9.699410 AGATTCTACCATTCATGATTACCAAAA 57.301 29.630 0.00 0.00 0.00 2.44
3570 3678 3.492337 ACCACTAATCTTCGGCCAAAAA 58.508 40.909 2.24 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.