Multiple sequence alignment - TraesCS2B01G131700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G131700 chr2B 100.000 5922 0 0 1 5922 98312775 98306854 0.000000e+00 10936.0
1 TraesCS2B01G131700 chr2B 96.584 322 11 0 49 370 222587362 222587041 8.740000e-148 534.0
2 TraesCS2B01G131700 chr2A 93.693 3805 185 25 660 4443 63803758 63799988 0.000000e+00 5646.0
3 TraesCS2B01G131700 chr2A 94.430 1508 63 9 4426 5922 63799634 63798137 0.000000e+00 2300.0
4 TraesCS2B01G131700 chr2A 96.073 331 13 0 41 371 493336265 493336595 1.880000e-149 540.0
5 TraesCS2B01G131700 chr2A 96.024 327 13 0 44 370 40502634 40502308 3.140000e-147 532.0
6 TraesCS2B01G131700 chr2D 94.441 2878 111 18 2677 5536 62620204 62617358 0.000000e+00 4383.0
7 TraesCS2B01G131700 chr2D 88.661 1270 73 20 370 1623 62622912 62621698 0.000000e+00 1482.0
8 TraesCS2B01G131700 chr2D 94.967 914 44 2 1773 2684 62621629 62620716 0.000000e+00 1432.0
9 TraesCS2B01G131700 chr2D 94.500 400 19 2 5523 5922 62615379 62614983 1.090000e-171 614.0
10 TraesCS2B01G131700 chr2D 95.714 70 2 1 1658 1727 62621695 62621627 1.740000e-20 111.0
11 TraesCS2B01G131700 chr7B 96.626 326 11 0 45 370 572960282 572959957 5.220000e-150 542.0
12 TraesCS2B01G131700 chr7B 96.330 327 11 1 44 370 435675957 435675632 2.430000e-148 536.0
13 TraesCS2B01G131700 chr7B 95.758 330 14 0 41 370 15508372 15508701 3.140000e-147 532.0
14 TraesCS2B01G131700 chr7B 93.548 62 4 0 1 62 474288720 474288781 6.320000e-15 93.5
15 TraesCS2B01G131700 chr7B 91.228 57 5 0 1 57 395364424 395364368 1.770000e-10 78.7
16 TraesCS2B01G131700 chr5B 96.296 324 12 0 42 365 108838485 108838162 3.140000e-147 532.0
17 TraesCS2B01G131700 chr6A 96.012 326 13 0 47 372 474328745 474329070 1.130000e-146 531.0
18 TraesCS2B01G131700 chr6A 81.319 91 17 0 2382 2472 617539982 617540072 2.290000e-09 75.0
19 TraesCS2B01G131700 chr3D 95.468 331 15 0 42 372 210410474 210410144 4.060000e-146 529.0
20 TraesCS2B01G131700 chr3A 95.413 327 14 1 45 371 569638382 569638707 2.450000e-143 520.0
21 TraesCS2B01G131700 chr3A 94.545 55 3 0 1 55 739386369 739386423 1.060000e-12 86.1
22 TraesCS2B01G131700 chr4D 86.207 87 11 1 4540 4626 293138704 293138619 6.320000e-15 93.5
23 TraesCS2B01G131700 chr6D 93.333 60 4 0 1 60 446535540 446535599 8.170000e-14 89.8
24 TraesCS2B01G131700 chr4A 85.057 87 12 1 4540 4626 321194801 321194886 2.940000e-13 87.9
25 TraesCS2B01G131700 chr5A 97.917 48 1 0 1 48 18633266 18633313 3.800000e-12 84.2
26 TraesCS2B01G131700 chr1A 97.917 48 1 0 1 48 6622079 6622032 3.800000e-12 84.2
27 TraesCS2B01G131700 chrUn 94.231 52 3 0 1 52 306175888 306175939 4.920000e-11 80.5
28 TraesCS2B01G131700 chr7D 84.615 78 9 3 1 76 540710743 540710667 2.290000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G131700 chr2B 98306854 98312775 5921 True 10936.0 10936 100.0000 1 5922 1 chr2B.!!$R1 5921
1 TraesCS2B01G131700 chr2A 63798137 63803758 5621 True 3973.0 5646 94.0615 660 5922 2 chr2A.!!$R2 5262
2 TraesCS2B01G131700 chr2D 62614983 62622912 7929 True 1604.4 4383 93.6566 370 5922 5 chr2D.!!$R1 5552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 290 0.034186 TGGTAGCTTGCATTGGGGAG 60.034 55.000 0.00 0.0 0.00 4.30 F
616 617 0.108567 TAGCGCCGCAGAAATGTACA 60.109 50.000 13.36 0.0 0.00 2.90 F
1634 1653 0.179200 GGTTAATGCACCTGCGTTCG 60.179 55.000 8.01 0.0 46.36 3.95 F
1920 1942 1.661112 GCACTGTCGATTAGCCTGTTC 59.339 52.381 0.00 0.0 0.00 3.18 F
2673 2699 0.530288 CCGGCAAATTTGGTGTAGGG 59.470 55.000 19.47 0.0 0.00 3.53 F
3203 3755 0.390340 TCCAGCACGAGTCTGCATTC 60.390 55.000 14.37 0.0 39.86 2.67 F
3424 3976 0.468226 TGGGTTATAGGCTTGCGGAG 59.532 55.000 0.00 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1345 1361 1.079474 TCAGCAGCCGCGAAATGTA 60.079 52.632 8.23 0.0 45.49 2.29 R
2056 2080 1.419381 TGCCAAGTGTACCTGTGAGA 58.581 50.000 0.00 0.0 0.00 3.27 R
2650 2676 0.601057 ACACCAAATTTGCCGGTAGC 59.399 50.000 12.92 0.0 44.14 3.58 R
2920 3472 1.028905 AGACGAGCCAGAGCATAGTC 58.971 55.000 0.00 0.0 43.56 2.59 R
4334 4889 2.697751 ACAGCTGAATCTAGGCCTACAG 59.302 50.000 23.35 19.2 0.00 2.74 R
4796 5722 3.056080 ACCAGGTAAGCACATATCCCAT 58.944 45.455 0.00 0.0 0.00 4.00 R
5308 6247 0.671781 GATCACAGAACCGCACTGCT 60.672 55.000 0.00 0.0 38.74 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.198409 TGTCATGAGGCATGTGTATCC 57.802 47.619 0.00 0.00 41.98 2.59
21 22 2.504996 TGTCATGAGGCATGTGTATCCA 59.495 45.455 0.00 0.00 41.98 3.41
22 23 3.136992 TGTCATGAGGCATGTGTATCCAT 59.863 43.478 0.00 0.00 41.98 3.41
23 24 4.347583 TGTCATGAGGCATGTGTATCCATA 59.652 41.667 0.00 0.00 41.98 2.74
24 25 5.013391 TGTCATGAGGCATGTGTATCCATAT 59.987 40.000 0.00 0.00 41.98 1.78
25 26 5.353400 GTCATGAGGCATGTGTATCCATATG 59.647 44.000 0.00 0.00 41.98 1.78
31 32 3.753815 CATGTGTATCCATATGCCACCA 58.246 45.455 0.00 0.00 34.09 4.17
32 33 4.338012 CATGTGTATCCATATGCCACCAT 58.662 43.478 0.00 0.00 34.09 3.55
33 34 4.451891 TGTGTATCCATATGCCACCATT 57.548 40.909 0.00 0.00 32.85 3.16
34 35 4.143543 TGTGTATCCATATGCCACCATTG 58.856 43.478 0.00 0.00 32.85 2.82
35 36 4.144297 GTGTATCCATATGCCACCATTGT 58.856 43.478 0.00 0.00 32.85 2.71
36 37 5.163152 TGTGTATCCATATGCCACCATTGTA 60.163 40.000 0.00 0.00 32.85 2.41
37 38 5.181245 GTGTATCCATATGCCACCATTGTAC 59.819 44.000 0.00 0.00 32.85 2.90
38 39 3.941704 TCCATATGCCACCATTGTACA 57.058 42.857 0.00 0.00 32.85 2.90
39 40 4.451891 TCCATATGCCACCATTGTACAT 57.548 40.909 0.00 0.00 32.85 2.29
40 41 4.143543 TCCATATGCCACCATTGTACATG 58.856 43.478 0.00 0.00 32.85 3.21
41 42 3.305539 CCATATGCCACCATTGTACATGC 60.306 47.826 0.00 0.00 32.85 4.06
42 43 1.113788 ATGCCACCATTGTACATGCC 58.886 50.000 0.00 0.00 0.00 4.40
43 44 0.969917 TGCCACCATTGTACATGCCC 60.970 55.000 0.00 0.00 0.00 5.36
44 45 0.684153 GCCACCATTGTACATGCCCT 60.684 55.000 0.00 0.00 0.00 5.19
45 46 1.409521 GCCACCATTGTACATGCCCTA 60.410 52.381 0.00 0.00 0.00 3.53
46 47 2.948147 GCCACCATTGTACATGCCCTAA 60.948 50.000 0.00 0.00 0.00 2.69
47 48 2.951642 CCACCATTGTACATGCCCTAAG 59.048 50.000 0.00 0.00 0.00 2.18
48 49 2.951642 CACCATTGTACATGCCCTAAGG 59.048 50.000 0.00 0.00 0.00 2.69
61 62 1.956477 CCCTAAGGGCATGTACAATGC 59.044 52.381 17.01 17.01 43.85 3.56
62 63 2.653726 CCTAAGGGCATGTACAATGCA 58.346 47.619 22.92 0.00 46.21 3.96
63 64 3.225104 CCTAAGGGCATGTACAATGCAT 58.775 45.455 22.92 14.73 46.21 3.96
64 65 4.397420 CCTAAGGGCATGTACAATGCATA 58.603 43.478 22.92 14.96 46.21 3.14
65 66 4.456911 CCTAAGGGCATGTACAATGCATAG 59.543 45.833 22.92 19.96 46.21 2.23
66 67 3.582998 AGGGCATGTACAATGCATAGT 57.417 42.857 22.92 8.67 46.21 2.12
67 68 3.480470 AGGGCATGTACAATGCATAGTC 58.520 45.455 22.92 11.16 46.21 2.59
68 69 3.137176 AGGGCATGTACAATGCATAGTCT 59.863 43.478 22.92 13.23 46.21 3.24
69 70 3.499918 GGGCATGTACAATGCATAGTCTC 59.500 47.826 22.92 10.19 46.21 3.36
70 71 4.129380 GGCATGTACAATGCATAGTCTCA 58.871 43.478 22.92 0.00 46.21 3.27
71 72 4.576053 GGCATGTACAATGCATAGTCTCAA 59.424 41.667 22.92 0.00 46.21 3.02
72 73 5.277683 GGCATGTACAATGCATAGTCTCAAG 60.278 44.000 22.92 0.00 46.21 3.02
73 74 5.277683 GCATGTACAATGCATAGTCTCAAGG 60.278 44.000 19.12 0.00 44.00 3.61
74 75 5.420725 TGTACAATGCATAGTCTCAAGGT 57.579 39.130 0.00 0.00 0.00 3.50
75 76 5.178061 TGTACAATGCATAGTCTCAAGGTG 58.822 41.667 0.00 0.00 0.00 4.00
76 77 4.558226 ACAATGCATAGTCTCAAGGTGA 57.442 40.909 0.00 0.00 0.00 4.02
77 78 5.108187 ACAATGCATAGTCTCAAGGTGAT 57.892 39.130 0.00 0.00 0.00 3.06
78 79 4.880120 ACAATGCATAGTCTCAAGGTGATG 59.120 41.667 0.00 0.00 0.00 3.07
79 80 2.910199 TGCATAGTCTCAAGGTGATGC 58.090 47.619 0.00 0.00 40.04 3.91
80 81 2.216898 GCATAGTCTCAAGGTGATGCC 58.783 52.381 0.00 0.00 34.88 4.40
94 95 4.075854 TGCCTCGCATGCCACGTA 62.076 61.111 13.15 0.00 31.71 3.57
95 96 3.264897 GCCTCGCATGCCACGTAG 61.265 66.667 13.15 2.04 0.00 3.51
96 97 2.586079 CCTCGCATGCCACGTAGG 60.586 66.667 13.15 7.64 41.84 3.18
97 98 2.494445 CTCGCATGCCACGTAGGA 59.506 61.111 13.15 0.14 41.22 2.94
98 99 1.068083 CTCGCATGCCACGTAGGAT 59.932 57.895 13.15 0.00 41.22 3.24
99 100 0.941463 CTCGCATGCCACGTAGGATC 60.941 60.000 13.15 0.00 41.22 3.36
100 101 2.302952 CGCATGCCACGTAGGATCG 61.303 63.158 13.15 1.55 41.22 3.69
101 102 1.956170 GCATGCCACGTAGGATCGG 60.956 63.158 6.36 0.00 41.22 4.18
102 103 1.739667 CATGCCACGTAGGATCGGA 59.260 57.895 8.04 0.00 41.22 4.55
103 104 0.318441 CATGCCACGTAGGATCGGAT 59.682 55.000 8.04 0.00 41.22 4.18
104 105 1.544246 CATGCCACGTAGGATCGGATA 59.456 52.381 8.04 0.00 41.22 2.59
105 106 1.919240 TGCCACGTAGGATCGGATAT 58.081 50.000 8.04 0.00 41.22 1.63
106 107 1.544246 TGCCACGTAGGATCGGATATG 59.456 52.381 8.04 0.00 41.22 1.78
107 108 1.816835 GCCACGTAGGATCGGATATGA 59.183 52.381 8.04 0.00 41.22 2.15
108 109 2.415625 GCCACGTAGGATCGGATATGAC 60.416 54.545 8.04 0.00 41.22 3.06
109 110 2.817844 CCACGTAGGATCGGATATGACA 59.182 50.000 0.00 0.00 41.22 3.58
110 111 3.444034 CCACGTAGGATCGGATATGACAT 59.556 47.826 0.00 0.00 41.22 3.06
111 112 4.638865 CCACGTAGGATCGGATATGACATA 59.361 45.833 0.00 0.00 41.22 2.29
112 113 5.124936 CCACGTAGGATCGGATATGACATAA 59.875 44.000 0.00 0.00 41.22 1.90
113 114 6.349860 CCACGTAGGATCGGATATGACATAAA 60.350 42.308 0.00 0.00 41.22 1.40
114 115 6.747739 CACGTAGGATCGGATATGACATAAAG 59.252 42.308 0.00 0.00 34.94 1.85
115 116 6.433404 ACGTAGGATCGGATATGACATAAAGT 59.567 38.462 0.00 0.00 34.94 2.66
116 117 7.609146 ACGTAGGATCGGATATGACATAAAGTA 59.391 37.037 0.00 0.00 34.94 2.24
117 118 8.123575 CGTAGGATCGGATATGACATAAAGTAG 58.876 40.741 0.00 0.00 0.00 2.57
118 119 7.411486 AGGATCGGATATGACATAAAGTAGG 57.589 40.000 0.00 0.00 0.00 3.18
119 120 6.954684 AGGATCGGATATGACATAAAGTAGGT 59.045 38.462 0.00 0.00 0.00 3.08
120 121 7.455008 AGGATCGGATATGACATAAAGTAGGTT 59.545 37.037 0.00 0.00 0.00 3.50
121 122 7.760340 GGATCGGATATGACATAAAGTAGGTTC 59.240 40.741 0.00 0.00 0.00 3.62
122 123 6.675026 TCGGATATGACATAAAGTAGGTTCG 58.325 40.000 0.00 0.00 0.00 3.95
123 124 5.862323 CGGATATGACATAAAGTAGGTTCGG 59.138 44.000 0.00 0.00 0.00 4.30
124 125 6.294342 CGGATATGACATAAAGTAGGTTCGGA 60.294 42.308 0.00 0.00 0.00 4.55
125 126 7.577046 CGGATATGACATAAAGTAGGTTCGGAT 60.577 40.741 0.00 0.00 0.00 4.18
126 127 8.746530 GGATATGACATAAAGTAGGTTCGGATA 58.253 37.037 0.00 0.00 0.00 2.59
127 128 9.790389 GATATGACATAAAGTAGGTTCGGATAG 57.210 37.037 0.00 0.00 0.00 2.08
128 129 6.401047 TGACATAAAGTAGGTTCGGATAGG 57.599 41.667 0.00 0.00 0.00 2.57
129 130 5.303589 TGACATAAAGTAGGTTCGGATAGGG 59.696 44.000 0.00 0.00 0.00 3.53
130 131 5.461327 ACATAAAGTAGGTTCGGATAGGGA 58.539 41.667 0.00 0.00 0.00 4.20
131 132 5.901276 ACATAAAGTAGGTTCGGATAGGGAA 59.099 40.000 0.00 0.00 0.00 3.97
132 133 6.041751 ACATAAAGTAGGTTCGGATAGGGAAG 59.958 42.308 0.00 0.00 0.00 3.46
133 134 2.317973 AGTAGGTTCGGATAGGGAAGC 58.682 52.381 0.00 0.00 41.06 3.86
134 135 1.000496 GTAGGTTCGGATAGGGAAGCG 60.000 57.143 0.00 0.00 44.35 4.68
135 136 1.069258 GGTTCGGATAGGGAAGCGG 59.931 63.158 0.00 0.00 32.96 5.52
136 137 1.069258 GTTCGGATAGGGAAGCGGG 59.931 63.158 0.00 0.00 0.00 6.13
137 138 1.075822 TTCGGATAGGGAAGCGGGA 60.076 57.895 0.00 0.00 0.00 5.14
138 139 0.471211 TTCGGATAGGGAAGCGGGAT 60.471 55.000 0.00 0.00 0.00 3.85
139 140 0.898789 TCGGATAGGGAAGCGGGATC 60.899 60.000 0.00 0.00 0.00 3.36
140 141 1.889530 CGGATAGGGAAGCGGGATCC 61.890 65.000 1.92 1.92 36.16 3.36
141 142 0.545548 GGATAGGGAAGCGGGATCCT 60.546 60.000 12.58 0.00 37.14 3.24
142 143 0.899019 GATAGGGAAGCGGGATCCTC 59.101 60.000 12.58 4.01 37.14 3.71
143 144 0.489567 ATAGGGAAGCGGGATCCTCT 59.510 55.000 12.58 6.48 37.14 3.69
144 145 0.178958 TAGGGAAGCGGGATCCTCTC 60.179 60.000 12.58 0.44 37.14 3.20
145 146 2.512355 GGGAAGCGGGATCCTCTCC 61.512 68.421 12.58 11.82 44.11 3.71
146 147 1.762460 GGAAGCGGGATCCTCTCCA 60.762 63.158 12.58 0.00 46.98 3.86
147 148 1.338136 GGAAGCGGGATCCTCTCCAA 61.338 60.000 12.58 0.00 46.98 3.53
148 149 0.105778 GAAGCGGGATCCTCTCCAAG 59.894 60.000 12.58 0.00 46.98 3.61
149 150 0.325671 AAGCGGGATCCTCTCCAAGA 60.326 55.000 12.58 0.00 46.98 3.02
150 151 0.758685 AGCGGGATCCTCTCCAAGAG 60.759 60.000 12.58 0.00 46.98 2.85
157 158 2.581354 CTCTCCAAGAGGCGGGTG 59.419 66.667 0.00 0.00 38.67 4.61
158 159 3.672295 CTCTCCAAGAGGCGGGTGC 62.672 68.421 0.00 0.00 38.67 5.01
159 160 3.710722 CTCCAAGAGGCGGGTGCT 61.711 66.667 0.00 0.00 42.25 4.40
160 161 3.249189 TCCAAGAGGCGGGTGCTT 61.249 61.111 0.00 0.00 42.25 3.91
161 162 3.058160 CCAAGAGGCGGGTGCTTG 61.058 66.667 0.00 0.00 42.25 4.01
162 163 2.032528 CAAGAGGCGGGTGCTTGA 59.967 61.111 0.00 0.00 41.03 3.02
163 164 1.600636 CAAGAGGCGGGTGCTTGAA 60.601 57.895 0.00 0.00 41.03 2.69
164 165 1.302832 AAGAGGCGGGTGCTTGAAG 60.303 57.895 0.00 0.00 42.25 3.02
165 166 1.768684 AAGAGGCGGGTGCTTGAAGA 61.769 55.000 0.00 0.00 42.25 2.87
166 167 1.743252 GAGGCGGGTGCTTGAAGAG 60.743 63.158 0.00 0.00 42.25 2.85
167 168 2.172483 GAGGCGGGTGCTTGAAGAGA 62.172 60.000 0.00 0.00 42.25 3.10
168 169 1.302511 GGCGGGTGCTTGAAGAGAA 60.303 57.895 0.00 0.00 42.25 2.87
169 170 0.889186 GGCGGGTGCTTGAAGAGAAA 60.889 55.000 0.00 0.00 42.25 2.52
170 171 0.951558 GCGGGTGCTTGAAGAGAAAA 59.048 50.000 0.00 0.00 38.39 2.29
171 172 1.336755 GCGGGTGCTTGAAGAGAAAAA 59.663 47.619 0.00 0.00 38.39 1.94
172 173 2.605580 GCGGGTGCTTGAAGAGAAAAAG 60.606 50.000 0.00 0.00 38.39 2.27
173 174 2.618709 CGGGTGCTTGAAGAGAAAAAGT 59.381 45.455 0.00 0.00 0.00 2.66
174 175 3.548818 CGGGTGCTTGAAGAGAAAAAGTG 60.549 47.826 0.00 0.00 0.00 3.16
175 176 3.381590 GGGTGCTTGAAGAGAAAAAGTGT 59.618 43.478 0.00 0.00 0.00 3.55
176 177 4.354587 GGTGCTTGAAGAGAAAAAGTGTG 58.645 43.478 0.00 0.00 0.00 3.82
177 178 4.354587 GTGCTTGAAGAGAAAAAGTGTGG 58.645 43.478 0.00 0.00 0.00 4.17
178 179 4.016444 TGCTTGAAGAGAAAAAGTGTGGT 58.984 39.130 0.00 0.00 0.00 4.16
179 180 4.096382 TGCTTGAAGAGAAAAAGTGTGGTC 59.904 41.667 0.00 0.00 0.00 4.02
180 181 4.498177 GCTTGAAGAGAAAAAGTGTGGTCC 60.498 45.833 0.00 0.00 0.00 4.46
181 182 3.202906 TGAAGAGAAAAAGTGTGGTCCG 58.797 45.455 0.00 0.00 0.00 4.79
182 183 2.256117 AGAGAAAAAGTGTGGTCCGG 57.744 50.000 0.00 0.00 0.00 5.14
183 184 1.489230 AGAGAAAAAGTGTGGTCCGGT 59.511 47.619 0.00 0.00 0.00 5.28
184 185 1.602377 GAGAAAAAGTGTGGTCCGGTG 59.398 52.381 0.00 0.00 0.00 4.94
185 186 1.210967 AGAAAAAGTGTGGTCCGGTGA 59.789 47.619 0.00 0.00 0.00 4.02
186 187 1.332686 GAAAAAGTGTGGTCCGGTGAC 59.667 52.381 0.00 0.00 40.98 3.67
187 188 0.253610 AAAAGTGTGGTCCGGTGACA 59.746 50.000 0.00 0.00 43.65 3.58
188 189 0.253610 AAAGTGTGGTCCGGTGACAA 59.746 50.000 0.00 0.00 43.65 3.18
189 190 0.253610 AAGTGTGGTCCGGTGACAAA 59.746 50.000 0.00 0.00 43.65 2.83
190 191 0.253610 AGTGTGGTCCGGTGACAAAA 59.746 50.000 0.00 0.00 43.65 2.44
191 192 0.661020 GTGTGGTCCGGTGACAAAAG 59.339 55.000 0.00 0.00 43.65 2.27
192 193 1.098712 TGTGGTCCGGTGACAAAAGC 61.099 55.000 0.00 0.00 43.65 3.51
193 194 0.818040 GTGGTCCGGTGACAAAAGCT 60.818 55.000 0.00 0.00 43.65 3.74
194 195 0.817634 TGGTCCGGTGACAAAAGCTG 60.818 55.000 0.00 0.00 43.65 4.24
195 196 0.534203 GGTCCGGTGACAAAAGCTGA 60.534 55.000 0.00 0.00 43.65 4.26
196 197 1.305201 GTCCGGTGACAAAAGCTGAA 58.695 50.000 0.00 0.00 41.37 3.02
197 198 1.673920 GTCCGGTGACAAAAGCTGAAA 59.326 47.619 0.00 0.00 41.37 2.69
198 199 2.098443 GTCCGGTGACAAAAGCTGAAAA 59.902 45.455 0.00 0.00 41.37 2.29
199 200 2.357637 TCCGGTGACAAAAGCTGAAAAG 59.642 45.455 0.00 0.00 0.00 2.27
200 201 2.543653 CCGGTGACAAAAGCTGAAAAGG 60.544 50.000 0.00 0.00 0.00 3.11
201 202 2.099098 CGGTGACAAAAGCTGAAAAGGT 59.901 45.455 0.00 0.00 0.00 3.50
202 203 3.428862 CGGTGACAAAAGCTGAAAAGGTT 60.429 43.478 0.00 0.00 0.00 3.50
203 204 3.865164 GGTGACAAAAGCTGAAAAGGTTG 59.135 43.478 0.00 0.00 0.00 3.77
204 205 4.381505 GGTGACAAAAGCTGAAAAGGTTGA 60.382 41.667 0.00 0.00 0.00 3.18
205 206 5.167845 GTGACAAAAGCTGAAAAGGTTGAA 58.832 37.500 0.00 0.00 0.00 2.69
206 207 5.289434 GTGACAAAAGCTGAAAAGGTTGAAG 59.711 40.000 0.00 0.00 0.00 3.02
207 208 5.047377 TGACAAAAGCTGAAAAGGTTGAAGT 60.047 36.000 0.00 0.00 0.00 3.01
208 209 5.170748 ACAAAAGCTGAAAAGGTTGAAGTG 58.829 37.500 0.00 0.00 0.00 3.16
209 210 5.047377 ACAAAAGCTGAAAAGGTTGAAGTGA 60.047 36.000 0.00 0.00 0.00 3.41
210 211 5.659440 AAAGCTGAAAAGGTTGAAGTGAA 57.341 34.783 0.00 0.00 0.00 3.18
211 212 5.659440 AAGCTGAAAAGGTTGAAGTGAAA 57.341 34.783 0.00 0.00 0.00 2.69
212 213 5.659440 AGCTGAAAAGGTTGAAGTGAAAA 57.341 34.783 0.00 0.00 0.00 2.29
213 214 5.654497 AGCTGAAAAGGTTGAAGTGAAAAG 58.346 37.500 0.00 0.00 0.00 2.27
214 215 5.185828 AGCTGAAAAGGTTGAAGTGAAAAGT 59.814 36.000 0.00 0.00 0.00 2.66
215 216 6.377146 AGCTGAAAAGGTTGAAGTGAAAAGTA 59.623 34.615 0.00 0.00 0.00 2.24
216 217 6.693113 GCTGAAAAGGTTGAAGTGAAAAGTAG 59.307 38.462 0.00 0.00 0.00 2.57
217 218 7.415206 GCTGAAAAGGTTGAAGTGAAAAGTAGA 60.415 37.037 0.00 0.00 0.00 2.59
218 219 7.985476 TGAAAAGGTTGAAGTGAAAAGTAGAG 58.015 34.615 0.00 0.00 0.00 2.43
219 220 7.827236 TGAAAAGGTTGAAGTGAAAAGTAGAGA 59.173 33.333 0.00 0.00 0.00 3.10
220 221 8.753497 AAAAGGTTGAAGTGAAAAGTAGAGAT 57.247 30.769 0.00 0.00 0.00 2.75
221 222 7.736447 AAGGTTGAAGTGAAAAGTAGAGATG 57.264 36.000 0.00 0.00 0.00 2.90
222 223 5.703130 AGGTTGAAGTGAAAAGTAGAGATGC 59.297 40.000 0.00 0.00 0.00 3.91
223 224 5.470098 GGTTGAAGTGAAAAGTAGAGATGCA 59.530 40.000 0.00 0.00 0.00 3.96
224 225 6.150140 GGTTGAAGTGAAAAGTAGAGATGCAT 59.850 38.462 0.00 0.00 0.00 3.96
225 226 6.732531 TGAAGTGAAAAGTAGAGATGCATG 57.267 37.500 2.46 0.00 0.00 4.06
226 227 6.233434 TGAAGTGAAAAGTAGAGATGCATGT 58.767 36.000 2.46 0.00 0.00 3.21
227 228 6.148315 TGAAGTGAAAAGTAGAGATGCATGTG 59.852 38.462 2.46 0.00 0.00 3.21
228 229 5.555017 AGTGAAAAGTAGAGATGCATGTGT 58.445 37.500 2.46 0.00 0.00 3.72
229 230 6.701340 AGTGAAAAGTAGAGATGCATGTGTA 58.299 36.000 2.46 0.00 0.00 2.90
230 231 6.591834 AGTGAAAAGTAGAGATGCATGTGTAC 59.408 38.462 19.88 19.88 0.00 2.90
231 232 6.591834 GTGAAAAGTAGAGATGCATGTGTACT 59.408 38.462 23.22 23.22 32.62 2.73
232 233 7.759886 GTGAAAAGTAGAGATGCATGTGTACTA 59.240 37.037 27.25 13.62 30.49 1.82
233 234 8.311109 TGAAAAGTAGAGATGCATGTGTACTAA 58.689 33.333 27.25 14.51 30.49 2.24
234 235 9.151471 GAAAAGTAGAGATGCATGTGTACTAAA 57.849 33.333 27.25 0.00 30.49 1.85
235 236 8.709386 AAAGTAGAGATGCATGTGTACTAAAG 57.291 34.615 27.25 0.00 30.49 1.85
236 237 7.411486 AGTAGAGATGCATGTGTACTAAAGT 57.589 36.000 26.28 7.72 30.07 2.66
237 238 7.484975 AGTAGAGATGCATGTGTACTAAAGTC 58.515 38.462 26.28 3.69 30.07 3.01
238 239 6.537453 AGAGATGCATGTGTACTAAAGTCT 57.463 37.500 2.46 0.00 0.00 3.24
239 240 6.940739 AGAGATGCATGTGTACTAAAGTCTT 58.059 36.000 2.46 0.00 0.00 3.01
240 241 7.390027 AGAGATGCATGTGTACTAAAGTCTTT 58.610 34.615 2.46 2.81 0.00 2.52
241 242 8.531982 AGAGATGCATGTGTACTAAAGTCTTTA 58.468 33.333 2.46 4.97 0.00 1.85
242 243 9.319143 GAGATGCATGTGTACTAAAGTCTTTAT 57.681 33.333 2.46 0.30 0.00 1.40
243 244 9.672673 AGATGCATGTGTACTAAAGTCTTTATT 57.327 29.630 2.46 3.27 0.00 1.40
265 266 9.707957 TTATTTTCTATTTCTTAATGAGGCCCA 57.292 29.630 0.00 0.00 0.00 5.36
266 267 7.404671 TTTTCTATTTCTTAATGAGGCCCAC 57.595 36.000 0.00 0.00 0.00 4.61
267 268 5.975988 TCTATTTCTTAATGAGGCCCACT 57.024 39.130 0.00 0.00 0.00 4.00
268 269 7.446106 TTCTATTTCTTAATGAGGCCCACTA 57.554 36.000 0.00 0.00 0.00 2.74
269 270 7.067496 TCTATTTCTTAATGAGGCCCACTAG 57.933 40.000 0.00 0.00 0.00 2.57
270 271 5.717119 ATTTCTTAATGAGGCCCACTAGT 57.283 39.130 0.00 0.00 0.00 2.57
271 272 4.487714 TTCTTAATGAGGCCCACTAGTG 57.512 45.455 16.34 16.34 0.00 2.74
282 283 2.698855 CCACTAGTGGTAGCTTGCAT 57.301 50.000 30.57 0.00 45.53 3.96
283 284 2.991250 CCACTAGTGGTAGCTTGCATT 58.009 47.619 30.57 0.00 45.53 3.56
284 285 2.679837 CCACTAGTGGTAGCTTGCATTG 59.320 50.000 30.57 3.32 45.53 2.82
285 286 2.679837 CACTAGTGGTAGCTTGCATTGG 59.320 50.000 15.49 0.00 0.00 3.16
286 287 2.292267 CTAGTGGTAGCTTGCATTGGG 58.708 52.381 0.00 0.00 0.00 4.12
287 288 0.323725 AGTGGTAGCTTGCATTGGGG 60.324 55.000 0.00 0.00 0.00 4.96
288 289 0.323360 GTGGTAGCTTGCATTGGGGA 60.323 55.000 0.00 0.00 0.00 4.81
289 290 0.034186 TGGTAGCTTGCATTGGGGAG 60.034 55.000 0.00 0.00 0.00 4.30
290 291 0.255890 GGTAGCTTGCATTGGGGAGA 59.744 55.000 0.00 0.00 0.00 3.71
291 292 1.340991 GGTAGCTTGCATTGGGGAGAA 60.341 52.381 0.00 0.00 0.00 2.87
292 293 2.446435 GTAGCTTGCATTGGGGAGAAA 58.554 47.619 0.00 0.00 0.00 2.52
293 294 2.014010 AGCTTGCATTGGGGAGAAAA 57.986 45.000 0.00 0.00 0.00 2.29
294 295 2.328319 AGCTTGCATTGGGGAGAAAAA 58.672 42.857 0.00 0.00 0.00 1.94
343 344 6.909550 TTTTGTTATGGGGCATATGTATCC 57.090 37.500 4.29 4.59 0.00 2.59
344 345 5.590976 TTGTTATGGGGCATATGTATCCA 57.409 39.130 13.42 13.42 0.00 3.41
345 346 5.794767 TGTTATGGGGCATATGTATCCAT 57.205 39.130 21.43 21.43 40.78 3.41
346 347 6.899892 TGTTATGGGGCATATGTATCCATA 57.100 37.500 20.05 20.05 38.87 2.74
347 348 7.464476 TGTTATGGGGCATATGTATCCATAT 57.536 36.000 22.41 14.37 43.54 1.78
358 359 4.451891 TGTATCCATATGCCACCATTGT 57.548 40.909 0.00 0.00 32.85 2.71
359 360 5.574970 TGTATCCATATGCCACCATTGTA 57.425 39.130 0.00 0.00 32.85 2.41
360 361 5.312895 TGTATCCATATGCCACCATTGTAC 58.687 41.667 0.00 0.00 32.85 2.90
361 362 3.941704 TCCATATGCCACCATTGTACA 57.058 42.857 0.00 0.00 32.85 2.90
362 363 4.451891 TCCATATGCCACCATTGTACAT 57.548 40.909 0.00 0.00 32.85 2.29
363 364 4.143543 TCCATATGCCACCATTGTACATG 58.856 43.478 0.00 0.00 32.85 3.21
364 365 3.305539 CCATATGCCACCATTGTACATGC 60.306 47.826 0.00 0.00 32.85 4.06
365 366 1.113788 ATGCCACCATTGTACATGCC 58.886 50.000 0.00 0.00 0.00 4.40
366 367 0.969917 TGCCACCATTGTACATGCCC 60.970 55.000 0.00 0.00 0.00 5.36
367 368 0.684153 GCCACCATTGTACATGCCCT 60.684 55.000 0.00 0.00 0.00 5.19
368 369 1.409521 GCCACCATTGTACATGCCCTA 60.410 52.381 0.00 0.00 0.00 3.53
380 381 1.142060 CATGCCCTAATTACGGTCCCA 59.858 52.381 2.93 0.00 0.00 4.37
384 385 2.422377 GCCCTAATTACGGTCCCAATGT 60.422 50.000 2.93 0.00 0.00 2.71
386 387 3.118186 CCCTAATTACGGTCCCAATGTGA 60.118 47.826 0.00 0.00 0.00 3.58
402 403 5.181811 CCAATGTGACGTATGGCATATTGAT 59.818 40.000 31.22 3.48 42.55 2.57
405 406 4.749598 TGTGACGTATGGCATATTGATGAC 59.250 41.667 10.92 4.33 42.08 3.06
411 412 1.488393 TGGCATATTGATGACGTGGGA 59.512 47.619 0.00 0.00 45.07 4.37
416 417 4.568956 CATATTGATGACGTGGGAGCATA 58.431 43.478 0.00 0.00 34.73 3.14
419 420 1.831106 TGATGACGTGGGAGCATAGTT 59.169 47.619 0.00 0.00 0.00 2.24
420 421 3.028130 TGATGACGTGGGAGCATAGTTA 58.972 45.455 0.00 0.00 0.00 2.24
426 427 3.454812 ACGTGGGAGCATAGTTAAGGAAT 59.545 43.478 0.00 0.00 0.00 3.01
439 440 9.681062 CATAGTTAAGGAATGGGACTTTTCTTA 57.319 33.333 0.00 0.00 0.00 2.10
440 441 7.997773 AGTTAAGGAATGGGACTTTTCTTAC 57.002 36.000 0.00 0.00 0.00 2.34
473 474 0.808755 GGGTTTATGGTGTTCGCTGG 59.191 55.000 0.00 0.00 0.00 4.85
495 496 4.022676 GGAACGGCTTTTAGGTTTGATTCA 60.023 41.667 0.00 0.00 0.00 2.57
511 512 6.908870 TTGATTCATCGTTAGACATCCAAG 57.091 37.500 0.00 0.00 0.00 3.61
518 519 2.474526 CGTTAGACATCCAAGCTTTGCG 60.475 50.000 0.00 0.00 0.00 4.85
519 520 2.742053 GTTAGACATCCAAGCTTTGCGA 59.258 45.455 0.00 0.00 0.00 5.10
520 521 1.896220 AGACATCCAAGCTTTGCGAA 58.104 45.000 0.00 0.00 0.00 4.70
521 522 1.537202 AGACATCCAAGCTTTGCGAAC 59.463 47.619 0.00 0.00 0.00 3.95
522 523 0.598065 ACATCCAAGCTTTGCGAACC 59.402 50.000 0.00 0.00 0.00 3.62
523 524 0.883833 CATCCAAGCTTTGCGAACCT 59.116 50.000 0.00 0.00 0.00 3.50
524 525 2.083774 CATCCAAGCTTTGCGAACCTA 58.916 47.619 0.00 0.00 0.00 3.08
525 526 1.808411 TCCAAGCTTTGCGAACCTAG 58.192 50.000 0.00 0.00 0.00 3.02
526 527 1.071699 TCCAAGCTTTGCGAACCTAGT 59.928 47.619 0.00 0.00 0.00 2.57
527 528 1.464997 CCAAGCTTTGCGAACCTAGTC 59.535 52.381 0.00 0.00 0.00 2.59
528 529 2.143122 CAAGCTTTGCGAACCTAGTCA 58.857 47.619 0.00 0.00 0.00 3.41
529 530 2.086054 AGCTTTGCGAACCTAGTCAG 57.914 50.000 0.00 0.00 0.00 3.51
530 531 0.444260 GCTTTGCGAACCTAGTCAGC 59.556 55.000 0.00 0.00 0.00 4.26
531 532 1.941668 GCTTTGCGAACCTAGTCAGCT 60.942 52.381 0.00 0.00 0.00 4.24
532 533 2.417719 CTTTGCGAACCTAGTCAGCTT 58.582 47.619 0.00 0.00 0.00 3.74
533 534 1.795768 TTGCGAACCTAGTCAGCTTG 58.204 50.000 0.00 0.00 0.00 4.01
534 535 0.966179 TGCGAACCTAGTCAGCTTGA 59.034 50.000 0.00 0.00 0.00 3.02
535 536 1.343142 TGCGAACCTAGTCAGCTTGAA 59.657 47.619 0.00 0.00 0.00 2.69
536 537 2.224185 TGCGAACCTAGTCAGCTTGAAA 60.224 45.455 0.00 0.00 0.00 2.69
537 538 2.806244 GCGAACCTAGTCAGCTTGAAAA 59.194 45.455 0.00 0.00 0.00 2.29
538 539 3.250040 GCGAACCTAGTCAGCTTGAAAAA 59.750 43.478 0.00 0.00 0.00 1.94
607 608 1.431488 AACATGTGATAGCGCCGCAG 61.431 55.000 13.36 0.00 0.00 5.18
615 616 1.192534 GATAGCGCCGCAGAAATGTAC 59.807 52.381 13.36 0.00 0.00 2.90
616 617 0.108567 TAGCGCCGCAGAAATGTACA 60.109 50.000 13.36 0.00 0.00 2.90
617 618 0.744414 AGCGCCGCAGAAATGTACAT 60.744 50.000 13.36 1.41 0.00 2.29
618 619 0.934496 GCGCCGCAGAAATGTACATA 59.066 50.000 9.21 0.00 0.00 2.29
630 631 9.319143 GCAGAAATGTACATAGTCACTTATTCT 57.681 33.333 9.21 8.15 0.00 2.40
651 652 5.674525 TCTTTATAGATGCAGTGACTTGGG 58.325 41.667 0.00 0.00 0.00 4.12
655 656 1.561076 AGATGCAGTGACTTGGGCATA 59.439 47.619 8.61 0.00 46.17 3.14
715 716 8.477256 ACTTGACTTGAATTTGAGAATTCCAAA 58.523 29.630 18.35 18.35 46.87 3.28
737 738 3.066190 GGTTGGCCGGCCTAAACC 61.066 66.667 37.97 37.97 35.78 3.27
753 754 1.518367 AACCCCCATCACACCGATAT 58.482 50.000 0.00 0.00 31.20 1.63
758 759 4.105697 ACCCCCATCACACCGATATTTTAT 59.894 41.667 0.00 0.00 31.20 1.40
761 762 6.041523 CCCCCATCACACCGATATTTTATTTT 59.958 38.462 0.00 0.00 31.20 1.82
779 780 4.561735 TTTTGGTCGTTTCCTTAAGCAG 57.438 40.909 0.00 0.00 0.00 4.24
853 855 4.702081 ATCTCGCCGCCGTATCGC 62.702 66.667 0.00 0.00 35.54 4.58
1345 1361 0.465705 CGTGATAGACATGGGCCACT 59.534 55.000 9.28 3.94 32.38 4.00
1346 1362 1.686587 CGTGATAGACATGGGCCACTA 59.313 52.381 9.28 6.59 32.38 2.74
1348 1364 2.434336 GTGATAGACATGGGCCACTACA 59.566 50.000 9.28 4.78 0.00 2.74
1350 1366 3.716353 TGATAGACATGGGCCACTACATT 59.284 43.478 9.28 0.00 0.00 2.71
1370 1386 4.828925 GCGGCTGCTGAGGGAGAC 62.829 72.222 13.72 0.00 38.39 3.36
1371 1387 3.073735 CGGCTGCTGAGGGAGACT 61.074 66.667 1.17 0.00 36.73 3.24
1372 1388 2.899505 GGCTGCTGAGGGAGACTC 59.100 66.667 0.00 0.00 46.78 3.36
1456 1475 0.756294 TCTCAGTGCGAGGGTTCAAA 59.244 50.000 0.00 0.00 42.55 2.69
1458 1477 0.878523 TCAGTGCGAGGGTTCAAACG 60.879 55.000 0.00 0.00 0.00 3.60
1471 1490 1.243902 TCAAACGGACAAGGCCAATC 58.756 50.000 5.01 0.00 0.00 2.67
1620 1639 8.158132 TGCGGATATCCATAGTAAAATGGTTAA 58.842 33.333 21.70 0.00 45.67 2.01
1626 1645 7.341445 TCCATAGTAAAATGGTTAATGCACC 57.659 36.000 0.00 0.00 45.67 5.01
1634 1653 0.179200 GGTTAATGCACCTGCGTTCG 60.179 55.000 8.01 0.00 46.36 3.95
1784 1806 8.409358 AAAATTCACTATGACCTTTAGCAACT 57.591 30.769 0.00 0.00 0.00 3.16
1785 1807 9.515226 AAAATTCACTATGACCTTTAGCAACTA 57.485 29.630 0.00 0.00 0.00 2.24
1860 1882 3.263681 ACTCCTAAAGGGTTAACTCTGCC 59.736 47.826 9.23 0.00 36.25 4.85
1886 1908 9.522804 CTTCGAAGTCTAGCTCTGTTAATTAAT 57.477 33.333 17.24 0.00 0.00 1.40
1920 1942 1.661112 GCACTGTCGATTAGCCTGTTC 59.339 52.381 0.00 0.00 0.00 3.18
1924 1946 2.993899 CTGTCGATTAGCCTGTTCGTTT 59.006 45.455 0.00 0.00 34.60 3.60
1935 1957 4.035684 GCCTGTTCGTTTTGACTCTTTTC 58.964 43.478 0.00 0.00 0.00 2.29
1961 1985 9.573133 CAACAGTTCTTCAAATATAATTCCCAC 57.427 33.333 0.00 0.00 0.00 4.61
2025 2049 4.153835 GCACCTCTCACAAATGAAGAAGAG 59.846 45.833 0.00 0.00 33.30 2.85
2201 2225 5.975939 GCATAAGCCTTCAAACATTGAGATC 59.024 40.000 0.00 0.00 36.40 2.75
2257 2281 4.998672 TGGTTGGTTAAACGATGAGGTAAG 59.001 41.667 0.00 0.00 39.91 2.34
2280 2304 7.309770 AGTATTCATATGGAAGAACCTCCTC 57.690 40.000 2.13 0.00 39.30 3.71
2439 2465 3.070748 GAGAGCAGAAAGAGAACCCAAC 58.929 50.000 0.00 0.00 0.00 3.77
2528 2554 5.724328 TGCTTTCTAGTACTTGTCTGATGG 58.276 41.667 0.00 0.00 0.00 3.51
2557 2583 4.402793 TCTTCCAGTCTGTATTCTGCTACC 59.597 45.833 0.00 0.00 0.00 3.18
2587 2613 9.829507 ATCAGTTATGATTTATATCTGCTAGCC 57.170 33.333 13.29 0.00 43.92 3.93
2591 2617 6.633325 ATGATTTATATCTGCTAGCCCTGT 57.367 37.500 13.29 0.00 0.00 4.00
2641 2667 6.912591 GCTGGGATTTGATAATACTTTTGTCG 59.087 38.462 0.00 0.00 0.00 4.35
2644 2670 9.451002 TGGGATTTGATAATACTTTTGTCGTAA 57.549 29.630 0.00 0.00 0.00 3.18
2650 2676 6.768861 TGATAATACTTTTGTCGTAATGGGGG 59.231 38.462 0.00 0.00 0.00 5.40
2656 2682 1.068585 GTCGTAATGGGGGCTACCG 59.931 63.158 0.00 0.00 41.60 4.02
2669 2695 0.601057 GCTACCGGCAAATTTGGTGT 59.399 50.000 19.47 6.95 41.35 4.16
2673 2699 0.530288 CCGGCAAATTTGGTGTAGGG 59.470 55.000 19.47 0.00 0.00 3.53
2784 3336 1.333347 CGGATCGTGAGCTCGTCTTAG 60.333 57.143 9.64 0.00 0.00 2.18
2832 3384 7.224753 TCACTTTGTTAGAAACTGAGATGTGTC 59.775 37.037 0.00 0.00 0.00 3.67
2834 3386 3.987868 TGTTAGAAACTGAGATGTGTCGC 59.012 43.478 0.00 0.00 29.89 5.19
2838 3390 4.238514 AGAAACTGAGATGTGTCGCTAAC 58.761 43.478 0.00 0.00 29.89 2.34
2841 3393 1.923204 CTGAGATGTGTCGCTAACTGC 59.077 52.381 0.00 0.00 38.57 4.40
2845 3397 2.496070 AGATGTGTCGCTAACTGCCTTA 59.504 45.455 0.00 0.00 38.78 2.69
2888 3440 5.564127 GCTTCAACTATTCGTGTTACTTTGC 59.436 40.000 0.00 0.00 0.00 3.68
2903 3455 2.614057 ACTTTGCTCAAAACTGGAGTCG 59.386 45.455 0.00 0.00 34.83 4.18
2920 3472 6.827641 TGGAGTCGATTTTGAATTAAACTCG 58.172 36.000 4.36 4.36 46.55 4.18
2940 3492 0.743688 ACTATGCTCTGGCTCGTCTG 59.256 55.000 0.00 0.00 39.59 3.51
2955 3507 4.083271 GCTCGTCTGGTTAGCTCAATTTTT 60.083 41.667 0.00 0.00 33.40 1.94
3025 3577 6.708949 AGCTAGTTCCGAACAAAGTTTGATAA 59.291 34.615 22.23 5.84 0.00 1.75
3063 3615 0.879090 GCTTGTTTTCCACCCCTACG 59.121 55.000 0.00 0.00 0.00 3.51
3074 3626 3.025978 CCACCCCTACGTACATGACTTA 58.974 50.000 0.00 0.00 0.00 2.24
3075 3627 3.181483 CCACCCCTACGTACATGACTTAC 60.181 52.174 0.00 0.00 0.00 2.34
3077 3629 4.159135 CACCCCTACGTACATGACTTACTT 59.841 45.833 0.00 0.00 0.00 2.24
3078 3630 4.159135 ACCCCTACGTACATGACTTACTTG 59.841 45.833 0.00 0.00 0.00 3.16
3079 3631 4.400251 CCCCTACGTACATGACTTACTTGA 59.600 45.833 0.00 0.00 0.00 3.02
3081 3633 6.207213 CCCTACGTACATGACTTACTTGATC 58.793 44.000 0.00 0.00 0.00 2.92
3083 3635 6.913132 CCTACGTACATGACTTACTTGATCTG 59.087 42.308 0.00 0.00 0.00 2.90
3084 3636 6.268825 ACGTACATGACTTACTTGATCTGT 57.731 37.500 0.00 0.00 0.00 3.41
3085 3637 6.688578 ACGTACATGACTTACTTGATCTGTT 58.311 36.000 0.00 0.00 0.00 3.16
3086 3638 7.152645 ACGTACATGACTTACTTGATCTGTTT 58.847 34.615 0.00 0.00 0.00 2.83
3087 3639 8.301720 ACGTACATGACTTACTTGATCTGTTTA 58.698 33.333 0.00 0.00 0.00 2.01
3119 3671 8.562892 CCTCATGGTTACATAAATTCATGACTC 58.437 37.037 0.00 0.00 36.53 3.36
3132 3684 8.638685 AAATTCATGACTCTTTTGTTGAAGTG 57.361 30.769 0.00 0.00 0.00 3.16
3141 3693 6.919662 ACTCTTTTGTTGAAGTGCAATACATG 59.080 34.615 0.00 0.00 39.03 3.21
3144 3696 5.512753 TTGTTGAAGTGCAATACATGTGT 57.487 34.783 9.11 0.00 39.03 3.72
3152 3704 3.090790 TGCAATACATGTGTGATGCCTT 58.909 40.909 9.11 0.00 38.98 4.35
3203 3755 0.390340 TCCAGCACGAGTCTGCATTC 60.390 55.000 14.37 0.00 39.86 2.67
3204 3756 1.364626 CCAGCACGAGTCTGCATTCC 61.365 60.000 14.37 0.00 39.86 3.01
3243 3795 4.017499 ACCCCCTTGCTATTTGACTATGTT 60.017 41.667 0.00 0.00 0.00 2.71
3275 3827 5.278266 CCTTGCTTGTTAGATTTTTCCGTCA 60.278 40.000 0.00 0.00 0.00 4.35
3309 3861 7.491372 TGACATGTAGCTAGTATTAAACAGTGC 59.509 37.037 0.00 0.00 0.00 4.40
3361 3913 2.825205 CTTGCTTGTGGAAAAACTGGG 58.175 47.619 0.00 0.00 0.00 4.45
3373 3925 6.316390 GTGGAAAAACTGGGTATGACTATCAG 59.684 42.308 0.00 0.00 0.00 2.90
3391 3943 4.703645 TCAGTCTGTTAGAAGATGGACG 57.296 45.455 0.00 0.00 0.00 4.79
3424 3976 0.468226 TGGGTTATAGGCTTGCGGAG 59.532 55.000 0.00 0.00 0.00 4.63
3441 3993 3.184581 GCGGAGTGTGAGAAAGTAAGTTG 59.815 47.826 0.00 0.00 0.00 3.16
3509 4062 3.965379 TTCCTCATGTTACGCTTACCA 57.035 42.857 0.00 0.00 0.00 3.25
3610 4163 9.709600 GAAGAAACTTTTCATTATCTCGATTCC 57.290 33.333 4.58 0.00 39.61 3.01
3630 4183 1.799258 CTTGGTGGCAAGGACAGTGC 61.799 60.000 0.00 0.00 41.45 4.40
3722 4275 9.111702 GTCTACGAATAAAGTACCATCGATAAC 57.888 37.037 0.00 0.00 37.27 1.89
3852 4407 3.070018 GGTTTCTCTGTGTGGATGACAG 58.930 50.000 0.00 0.00 41.96 3.51
4224 4779 7.319646 CCTGTTTCTGTCAGGCTAGATATATC 58.680 42.308 4.42 4.42 44.46 1.63
4225 4780 6.914259 TGTTTCTGTCAGGCTAGATATATCG 58.086 40.000 7.08 0.00 0.00 2.92
4249 4804 6.327934 GTGGATGAATTGAAGGACAAGAATG 58.672 40.000 0.00 0.00 42.02 2.67
4328 4883 7.309194 GCAACATAATGGGTACACTTTCTTTCT 60.309 37.037 0.00 0.00 0.00 2.52
4334 4889 4.001652 GGGTACACTTTCTTTCTACTGCC 58.998 47.826 0.00 0.00 0.00 4.85
4507 5433 8.880878 TTCTTTATAGCAATAAGTACGCATGA 57.119 30.769 0.00 0.00 0.00 3.07
4509 5435 8.978539 TCTTTATAGCAATAAGTACGCATGAAG 58.021 33.333 0.00 0.00 0.00 3.02
4796 5722 4.466015 TCTCTCTTGCACACACATATACCA 59.534 41.667 0.00 0.00 0.00 3.25
4946 5872 6.375455 AGAATGTCCTGTTTATGACCAACATC 59.625 38.462 0.00 0.00 40.07 3.06
5028 5954 1.272490 TCGGCTGTCAACAACTAGAGG 59.728 52.381 0.00 0.00 0.00 3.69
5132 6058 5.930135 TCTGATTTTGGTAGAATAGAGGGC 58.070 41.667 0.00 0.00 0.00 5.19
5194 6120 0.179150 GGTAGAGTGCTCTGCTCACG 60.179 60.000 14.99 0.00 41.26 4.35
5195 6121 0.523966 GTAGAGTGCTCTGCTCACGT 59.476 55.000 11.63 0.00 40.71 4.49
5308 6247 6.058833 TGTACTGCTGTGGAAACTTAATCAA 58.941 36.000 6.48 0.00 0.00 2.57
5315 6254 4.229876 GTGGAAACTTAATCAAGCAGTGC 58.770 43.478 7.13 7.13 34.94 4.40
5332 6271 1.601903 GTGCGGTTCTGTGATCACAAA 59.398 47.619 27.63 20.49 41.33 2.83
5430 6369 7.019774 TCTCAATGTCAGTCAAAAGTTTCAG 57.980 36.000 0.00 0.00 0.00 3.02
5502 6441 7.039223 TGGAGTAACTTAACCCTAGTTTCTGAG 60.039 40.741 0.00 0.00 34.63 3.35
5590 8525 5.359194 ACCTTCAACGAGTATGGATTCAT 57.641 39.130 0.00 0.00 37.40 2.57
5617 8552 1.328279 CAAGTCAGAACCCAAACCCC 58.672 55.000 0.00 0.00 0.00 4.95
5620 8555 1.289530 AGTCAGAACCCAAACCCCAAA 59.710 47.619 0.00 0.00 0.00 3.28
5640 8575 3.423154 GCCCGAACCGTTGCTGAG 61.423 66.667 0.00 0.00 0.00 3.35
5881 8817 0.674895 GCTTGTTCCATCAGACGCCT 60.675 55.000 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.504996 TGGATACACATGCCTCATGACA 59.495 45.455 13.11 0.00 46.17 3.58
1 2 3.198409 TGGATACACATGCCTCATGAC 57.802 47.619 13.11 0.00 46.17 3.06
15 16 5.312895 TGTACAATGGTGGCATATGGATAC 58.687 41.667 4.56 0.00 0.00 2.24
16 17 5.574970 TGTACAATGGTGGCATATGGATA 57.425 39.130 4.56 0.00 0.00 2.59
17 18 4.451891 TGTACAATGGTGGCATATGGAT 57.548 40.909 4.56 0.00 0.00 3.41
18 19 3.941704 TGTACAATGGTGGCATATGGA 57.058 42.857 4.56 0.00 0.00 3.41
19 20 3.305539 GCATGTACAATGGTGGCATATGG 60.306 47.826 0.00 0.00 0.00 2.74
20 21 3.305539 GGCATGTACAATGGTGGCATATG 60.306 47.826 14.01 0.00 37.14 1.78
21 22 2.892852 GGCATGTACAATGGTGGCATAT 59.107 45.455 14.01 0.00 37.14 1.78
22 23 2.305928 GGCATGTACAATGGTGGCATA 58.694 47.619 14.01 0.00 37.14 3.14
23 24 1.113788 GGCATGTACAATGGTGGCAT 58.886 50.000 14.01 0.00 37.14 4.40
24 25 0.969917 GGGCATGTACAATGGTGGCA 60.970 55.000 18.87 0.00 38.72 4.92
25 26 0.684153 AGGGCATGTACAATGGTGGC 60.684 55.000 11.25 11.25 36.52 5.01
26 27 2.727123 TAGGGCATGTACAATGGTGG 57.273 50.000 0.00 0.00 0.00 4.61
27 28 2.951642 CCTTAGGGCATGTACAATGGTG 59.048 50.000 0.00 0.00 0.00 4.17
28 29 2.091885 CCCTTAGGGCATGTACAATGGT 60.092 50.000 3.52 0.00 35.35 3.55
29 30 2.586425 CCCTTAGGGCATGTACAATGG 58.414 52.381 3.52 0.00 35.35 3.16
42 43 2.653726 TGCATTGTACATGCCCTTAGG 58.346 47.619 20.37 0.00 43.94 2.69
43 44 5.065914 ACTATGCATTGTACATGCCCTTAG 58.934 41.667 12.24 18.91 43.94 2.18
44 45 5.047566 ACTATGCATTGTACATGCCCTTA 57.952 39.130 12.24 12.26 43.94 2.69
45 46 3.885297 GACTATGCATTGTACATGCCCTT 59.115 43.478 13.85 11.92 43.94 3.95
46 47 3.137176 AGACTATGCATTGTACATGCCCT 59.863 43.478 13.85 13.49 43.94 5.19
47 48 3.480470 AGACTATGCATTGTACATGCCC 58.520 45.455 13.85 0.19 43.94 5.36
48 49 4.129380 TGAGACTATGCATTGTACATGCC 58.871 43.478 13.85 0.88 43.94 4.40
49 50 5.277683 CCTTGAGACTATGCATTGTACATGC 60.278 44.000 13.85 17.91 44.76 4.06
50 51 5.819379 ACCTTGAGACTATGCATTGTACATG 59.181 40.000 13.85 16.18 0.00 3.21
51 52 5.819379 CACCTTGAGACTATGCATTGTACAT 59.181 40.000 13.85 3.55 0.00 2.29
52 53 5.046663 TCACCTTGAGACTATGCATTGTACA 60.047 40.000 13.85 13.53 0.00 2.90
53 54 5.419542 TCACCTTGAGACTATGCATTGTAC 58.580 41.667 13.85 11.33 0.00 2.90
54 55 5.675684 TCACCTTGAGACTATGCATTGTA 57.324 39.130 13.85 0.00 0.00 2.41
55 56 4.558226 TCACCTTGAGACTATGCATTGT 57.442 40.909 13.75 13.75 0.00 2.71
56 57 4.261072 GCATCACCTTGAGACTATGCATTG 60.261 45.833 3.54 5.32 39.53 2.82
57 58 3.881688 GCATCACCTTGAGACTATGCATT 59.118 43.478 3.54 0.00 39.53 3.56
58 59 3.474600 GCATCACCTTGAGACTATGCAT 58.525 45.455 3.79 3.79 39.53 3.96
59 60 2.420547 GGCATCACCTTGAGACTATGCA 60.421 50.000 0.00 0.00 41.08 3.96
60 61 2.216898 GGCATCACCTTGAGACTATGC 58.783 52.381 0.00 0.00 39.13 3.14
77 78 4.075854 TACGTGGCATGCGAGGCA 62.076 61.111 20.34 6.76 44.86 4.75
78 79 3.264897 CTACGTGGCATGCGAGGC 61.265 66.667 20.34 3.56 0.00 4.70
79 80 2.369257 ATCCTACGTGGCATGCGAGG 62.369 60.000 19.08 19.08 35.26 4.63
80 81 0.941463 GATCCTACGTGGCATGCGAG 60.941 60.000 12.44 7.86 35.26 5.03
81 82 1.067416 GATCCTACGTGGCATGCGA 59.933 57.895 12.44 4.51 35.26 5.10
82 83 2.302952 CGATCCTACGTGGCATGCG 61.303 63.158 12.44 0.54 35.26 4.73
83 84 1.956170 CCGATCCTACGTGGCATGC 60.956 63.158 9.90 9.90 35.26 4.06
84 85 0.318441 ATCCGATCCTACGTGGCATG 59.682 55.000 4.87 4.87 35.26 4.06
85 86 1.919240 TATCCGATCCTACGTGGCAT 58.081 50.000 0.00 0.00 35.26 4.40
86 87 1.544246 CATATCCGATCCTACGTGGCA 59.456 52.381 0.00 0.00 35.26 4.92
87 88 1.816835 TCATATCCGATCCTACGTGGC 59.183 52.381 0.00 0.00 35.26 5.01
88 89 2.817844 TGTCATATCCGATCCTACGTGG 59.182 50.000 0.00 0.00 37.10 4.94
89 90 4.703645 ATGTCATATCCGATCCTACGTG 57.296 45.455 0.00 0.00 0.00 4.49
90 91 6.433404 ACTTTATGTCATATCCGATCCTACGT 59.567 38.462 0.00 0.00 0.00 3.57
91 92 6.853720 ACTTTATGTCATATCCGATCCTACG 58.146 40.000 0.00 0.00 0.00 3.51
92 93 8.407064 CCTACTTTATGTCATATCCGATCCTAC 58.593 40.741 0.00 0.00 0.00 3.18
93 94 8.114102 ACCTACTTTATGTCATATCCGATCCTA 58.886 37.037 0.00 0.00 0.00 2.94
94 95 6.954684 ACCTACTTTATGTCATATCCGATCCT 59.045 38.462 0.00 0.00 0.00 3.24
95 96 7.171630 ACCTACTTTATGTCATATCCGATCC 57.828 40.000 0.00 0.00 0.00 3.36
96 97 7.485277 CGAACCTACTTTATGTCATATCCGATC 59.515 40.741 0.00 0.00 0.00 3.69
97 98 7.313646 CGAACCTACTTTATGTCATATCCGAT 58.686 38.462 0.00 0.00 0.00 4.18
98 99 6.294342 CCGAACCTACTTTATGTCATATCCGA 60.294 42.308 0.00 0.00 0.00 4.55
99 100 5.862323 CCGAACCTACTTTATGTCATATCCG 59.138 44.000 0.00 0.00 0.00 4.18
100 101 6.989659 TCCGAACCTACTTTATGTCATATCC 58.010 40.000 0.00 0.00 0.00 2.59
101 102 9.790389 CTATCCGAACCTACTTTATGTCATATC 57.210 37.037 0.00 0.00 0.00 1.63
102 103 8.750298 CCTATCCGAACCTACTTTATGTCATAT 58.250 37.037 0.00 0.00 0.00 1.78
103 104 7.177921 CCCTATCCGAACCTACTTTATGTCATA 59.822 40.741 0.00 0.00 0.00 2.15
104 105 6.014499 CCCTATCCGAACCTACTTTATGTCAT 60.014 42.308 0.00 0.00 0.00 3.06
105 106 5.303589 CCCTATCCGAACCTACTTTATGTCA 59.696 44.000 0.00 0.00 0.00 3.58
106 107 5.537674 TCCCTATCCGAACCTACTTTATGTC 59.462 44.000 0.00 0.00 0.00 3.06
107 108 5.461327 TCCCTATCCGAACCTACTTTATGT 58.539 41.667 0.00 0.00 0.00 2.29
108 109 6.415206 TTCCCTATCCGAACCTACTTTATG 57.585 41.667 0.00 0.00 0.00 1.90
109 110 5.011840 GCTTCCCTATCCGAACCTACTTTAT 59.988 44.000 0.00 0.00 0.00 1.40
110 111 4.343239 GCTTCCCTATCCGAACCTACTTTA 59.657 45.833 0.00 0.00 0.00 1.85
111 112 3.134262 GCTTCCCTATCCGAACCTACTTT 59.866 47.826 0.00 0.00 0.00 2.66
112 113 2.699321 GCTTCCCTATCCGAACCTACTT 59.301 50.000 0.00 0.00 0.00 2.24
113 114 2.317973 GCTTCCCTATCCGAACCTACT 58.682 52.381 0.00 0.00 0.00 2.57
114 115 1.000496 CGCTTCCCTATCCGAACCTAC 60.000 57.143 0.00 0.00 0.00 3.18
115 116 1.325355 CGCTTCCCTATCCGAACCTA 58.675 55.000 0.00 0.00 0.00 3.08
116 117 1.400530 CCGCTTCCCTATCCGAACCT 61.401 60.000 0.00 0.00 0.00 3.50
117 118 1.069258 CCGCTTCCCTATCCGAACC 59.931 63.158 0.00 0.00 0.00 3.62
118 119 1.069258 CCCGCTTCCCTATCCGAAC 59.931 63.158 0.00 0.00 0.00 3.95
119 120 0.471211 ATCCCGCTTCCCTATCCGAA 60.471 55.000 0.00 0.00 0.00 4.30
120 121 0.898789 GATCCCGCTTCCCTATCCGA 60.899 60.000 0.00 0.00 0.00 4.55
121 122 1.592223 GATCCCGCTTCCCTATCCG 59.408 63.158 0.00 0.00 0.00 4.18
122 123 0.545548 AGGATCCCGCTTCCCTATCC 60.546 60.000 8.55 0.00 37.05 2.59
123 124 0.899019 GAGGATCCCGCTTCCCTATC 59.101 60.000 8.55 0.00 33.45 2.08
124 125 0.489567 AGAGGATCCCGCTTCCCTAT 59.510 55.000 8.55 0.00 33.66 2.57
125 126 0.178958 GAGAGGATCCCGCTTCCCTA 60.179 60.000 8.55 0.00 32.83 3.53
126 127 1.458588 GAGAGGATCCCGCTTCCCT 60.459 63.158 8.55 0.00 32.83 4.20
127 128 2.512355 GGAGAGGATCCCGCTTCCC 61.512 68.421 8.55 1.29 43.01 3.97
128 129 3.143338 GGAGAGGATCCCGCTTCC 58.857 66.667 8.55 6.90 43.01 3.46
140 141 2.581354 CACCCGCCTCTTGGAGAG 59.419 66.667 0.00 0.00 41.96 3.20
141 142 3.706373 GCACCCGCCTCTTGGAGA 61.706 66.667 0.00 0.00 34.95 3.71
142 143 3.259633 AAGCACCCGCCTCTTGGAG 62.260 63.158 0.00 0.00 39.83 3.86
143 144 3.249189 AAGCACCCGCCTCTTGGA 61.249 61.111 0.00 0.00 39.83 3.53
144 145 3.058160 CAAGCACCCGCCTCTTGG 61.058 66.667 0.00 0.00 39.83 3.61
145 146 1.580845 CTTCAAGCACCCGCCTCTTG 61.581 60.000 0.00 0.00 39.83 3.02
146 147 1.302832 CTTCAAGCACCCGCCTCTT 60.303 57.895 0.00 0.00 39.83 2.85
147 148 2.177594 CTCTTCAAGCACCCGCCTCT 62.178 60.000 0.00 0.00 39.83 3.69
148 149 1.743252 CTCTTCAAGCACCCGCCTC 60.743 63.158 0.00 0.00 39.83 4.70
149 150 1.768684 TTCTCTTCAAGCACCCGCCT 61.769 55.000 0.00 0.00 39.83 5.52
150 151 0.889186 TTTCTCTTCAAGCACCCGCC 60.889 55.000 0.00 0.00 39.83 6.13
151 152 0.951558 TTTTCTCTTCAAGCACCCGC 59.048 50.000 0.00 0.00 38.99 6.13
152 153 2.618709 ACTTTTTCTCTTCAAGCACCCG 59.381 45.455 0.00 0.00 0.00 5.28
153 154 3.381590 ACACTTTTTCTCTTCAAGCACCC 59.618 43.478 0.00 0.00 0.00 4.61
154 155 4.354587 CACACTTTTTCTCTTCAAGCACC 58.645 43.478 0.00 0.00 0.00 5.01
155 156 4.142381 ACCACACTTTTTCTCTTCAAGCAC 60.142 41.667 0.00 0.00 0.00 4.40
156 157 4.016444 ACCACACTTTTTCTCTTCAAGCA 58.984 39.130 0.00 0.00 0.00 3.91
157 158 4.498177 GGACCACACTTTTTCTCTTCAAGC 60.498 45.833 0.00 0.00 0.00 4.01
158 159 4.260784 CGGACCACACTTTTTCTCTTCAAG 60.261 45.833 0.00 0.00 0.00 3.02
159 160 3.625764 CGGACCACACTTTTTCTCTTCAA 59.374 43.478 0.00 0.00 0.00 2.69
160 161 3.202906 CGGACCACACTTTTTCTCTTCA 58.797 45.455 0.00 0.00 0.00 3.02
161 162 2.548480 CCGGACCACACTTTTTCTCTTC 59.452 50.000 0.00 0.00 0.00 2.87
162 163 2.092592 ACCGGACCACACTTTTTCTCTT 60.093 45.455 9.46 0.00 0.00 2.85
163 164 1.489230 ACCGGACCACACTTTTTCTCT 59.511 47.619 9.46 0.00 0.00 3.10
164 165 1.602377 CACCGGACCACACTTTTTCTC 59.398 52.381 9.46 0.00 0.00 2.87
165 166 1.210967 TCACCGGACCACACTTTTTCT 59.789 47.619 9.46 0.00 0.00 2.52
166 167 1.332686 GTCACCGGACCACACTTTTTC 59.667 52.381 9.46 0.00 38.12 2.29
167 168 1.340211 TGTCACCGGACCACACTTTTT 60.340 47.619 9.46 0.00 43.65 1.94
168 169 0.253610 TGTCACCGGACCACACTTTT 59.746 50.000 9.46 0.00 43.65 2.27
169 170 0.253610 TTGTCACCGGACCACACTTT 59.746 50.000 9.46 0.00 43.65 2.66
170 171 0.253610 TTTGTCACCGGACCACACTT 59.746 50.000 9.46 0.00 43.65 3.16
171 172 0.253610 TTTTGTCACCGGACCACACT 59.746 50.000 9.46 0.00 43.65 3.55
172 173 0.661020 CTTTTGTCACCGGACCACAC 59.339 55.000 9.46 0.00 43.65 3.82
173 174 1.098712 GCTTTTGTCACCGGACCACA 61.099 55.000 9.46 4.37 43.65 4.17
174 175 0.818040 AGCTTTTGTCACCGGACCAC 60.818 55.000 9.46 1.18 43.65 4.16
175 176 0.817634 CAGCTTTTGTCACCGGACCA 60.818 55.000 9.46 0.00 43.65 4.02
176 177 0.534203 TCAGCTTTTGTCACCGGACC 60.534 55.000 9.46 0.00 43.65 4.46
177 178 1.305201 TTCAGCTTTTGTCACCGGAC 58.695 50.000 9.46 0.00 44.57 4.79
178 179 2.045561 TTTCAGCTTTTGTCACCGGA 57.954 45.000 9.46 0.00 0.00 5.14
179 180 2.543653 CCTTTTCAGCTTTTGTCACCGG 60.544 50.000 0.00 0.00 0.00 5.28
180 181 2.099098 ACCTTTTCAGCTTTTGTCACCG 59.901 45.455 0.00 0.00 0.00 4.94
181 182 3.801114 ACCTTTTCAGCTTTTGTCACC 57.199 42.857 0.00 0.00 0.00 4.02
182 183 4.743493 TCAACCTTTTCAGCTTTTGTCAC 58.257 39.130 0.00 0.00 0.00 3.67
183 184 5.047377 ACTTCAACCTTTTCAGCTTTTGTCA 60.047 36.000 0.00 0.00 0.00 3.58
184 185 5.289434 CACTTCAACCTTTTCAGCTTTTGTC 59.711 40.000 0.00 0.00 0.00 3.18
185 186 5.047377 TCACTTCAACCTTTTCAGCTTTTGT 60.047 36.000 0.00 0.00 0.00 2.83
186 187 5.410067 TCACTTCAACCTTTTCAGCTTTTG 58.590 37.500 0.00 0.00 0.00 2.44
187 188 5.659440 TCACTTCAACCTTTTCAGCTTTT 57.341 34.783 0.00 0.00 0.00 2.27
188 189 5.659440 TTCACTTCAACCTTTTCAGCTTT 57.341 34.783 0.00 0.00 0.00 3.51
189 190 5.659440 TTTCACTTCAACCTTTTCAGCTT 57.341 34.783 0.00 0.00 0.00 3.74
190 191 5.185828 ACTTTTCACTTCAACCTTTTCAGCT 59.814 36.000 0.00 0.00 0.00 4.24
191 192 5.410924 ACTTTTCACTTCAACCTTTTCAGC 58.589 37.500 0.00 0.00 0.00 4.26
192 193 7.985476 TCTACTTTTCACTTCAACCTTTTCAG 58.015 34.615 0.00 0.00 0.00 3.02
193 194 7.827236 TCTCTACTTTTCACTTCAACCTTTTCA 59.173 33.333 0.00 0.00 0.00 2.69
194 195 8.209917 TCTCTACTTTTCACTTCAACCTTTTC 57.790 34.615 0.00 0.00 0.00 2.29
195 196 8.624776 CATCTCTACTTTTCACTTCAACCTTTT 58.375 33.333 0.00 0.00 0.00 2.27
196 197 7.255277 GCATCTCTACTTTTCACTTCAACCTTT 60.255 37.037 0.00 0.00 0.00 3.11
197 198 6.205658 GCATCTCTACTTTTCACTTCAACCTT 59.794 38.462 0.00 0.00 0.00 3.50
198 199 5.703130 GCATCTCTACTTTTCACTTCAACCT 59.297 40.000 0.00 0.00 0.00 3.50
199 200 5.470098 TGCATCTCTACTTTTCACTTCAACC 59.530 40.000 0.00 0.00 0.00 3.77
200 201 6.545504 TGCATCTCTACTTTTCACTTCAAC 57.454 37.500 0.00 0.00 0.00 3.18
201 202 6.712095 ACATGCATCTCTACTTTTCACTTCAA 59.288 34.615 0.00 0.00 0.00 2.69
202 203 6.148315 CACATGCATCTCTACTTTTCACTTCA 59.852 38.462 0.00 0.00 0.00 3.02
203 204 6.148480 ACACATGCATCTCTACTTTTCACTTC 59.852 38.462 0.00 0.00 0.00 3.01
204 205 6.000219 ACACATGCATCTCTACTTTTCACTT 59.000 36.000 0.00 0.00 0.00 3.16
205 206 5.555017 ACACATGCATCTCTACTTTTCACT 58.445 37.500 0.00 0.00 0.00 3.41
206 207 5.869753 ACACATGCATCTCTACTTTTCAC 57.130 39.130 0.00 0.00 0.00 3.18
207 208 6.701340 AGTACACATGCATCTCTACTTTTCA 58.299 36.000 0.00 0.00 0.00 2.69
208 209 8.703604 TTAGTACACATGCATCTCTACTTTTC 57.296 34.615 0.00 0.00 0.00 2.29
209 210 9.155975 CTTTAGTACACATGCATCTCTACTTTT 57.844 33.333 0.00 0.00 0.00 2.27
210 211 8.314751 ACTTTAGTACACATGCATCTCTACTTT 58.685 33.333 0.00 0.00 0.00 2.66
211 212 7.841956 ACTTTAGTACACATGCATCTCTACTT 58.158 34.615 0.00 0.00 0.00 2.24
212 213 7.340743 AGACTTTAGTACACATGCATCTCTACT 59.659 37.037 0.00 4.19 0.00 2.57
213 214 7.484975 AGACTTTAGTACACATGCATCTCTAC 58.515 38.462 0.00 0.00 0.00 2.59
214 215 7.646548 AGACTTTAGTACACATGCATCTCTA 57.353 36.000 0.00 0.00 0.00 2.43
215 216 6.537453 AGACTTTAGTACACATGCATCTCT 57.463 37.500 0.00 0.00 0.00 3.10
216 217 7.602517 AAAGACTTTAGTACACATGCATCTC 57.397 36.000 0.00 0.00 0.00 2.75
217 218 9.672673 AATAAAGACTTTAGTACACATGCATCT 57.327 29.630 12.93 0.00 0.00 2.90
239 240 9.707957 TGGGCCTCATTAAGAAATAGAAAATAA 57.292 29.630 4.53 0.00 0.00 1.40
240 241 9.131791 GTGGGCCTCATTAAGAAATAGAAAATA 57.868 33.333 4.53 0.00 0.00 1.40
241 242 7.841222 AGTGGGCCTCATTAAGAAATAGAAAAT 59.159 33.333 4.53 0.00 0.00 1.82
242 243 7.182060 AGTGGGCCTCATTAAGAAATAGAAAA 58.818 34.615 4.53 0.00 0.00 2.29
243 244 6.731467 AGTGGGCCTCATTAAGAAATAGAAA 58.269 36.000 4.53 0.00 0.00 2.52
244 245 6.327386 AGTGGGCCTCATTAAGAAATAGAA 57.673 37.500 4.53 0.00 0.00 2.10
245 246 5.975988 AGTGGGCCTCATTAAGAAATAGA 57.024 39.130 4.53 0.00 0.00 1.98
246 247 6.708054 CACTAGTGGGCCTCATTAAGAAATAG 59.292 42.308 15.49 0.00 0.00 1.73
247 248 6.409234 CCACTAGTGGGCCTCATTAAGAAATA 60.409 42.308 31.15 0.00 46.81 1.40
248 249 5.440610 CACTAGTGGGCCTCATTAAGAAAT 58.559 41.667 15.49 0.00 0.00 2.17
249 250 4.324254 CCACTAGTGGGCCTCATTAAGAAA 60.324 45.833 31.15 0.00 46.81 2.52
250 251 3.199946 CCACTAGTGGGCCTCATTAAGAA 59.800 47.826 31.15 0.00 46.81 2.52
251 252 2.771943 CCACTAGTGGGCCTCATTAAGA 59.228 50.000 31.15 0.00 46.81 2.10
252 253 3.199880 CCACTAGTGGGCCTCATTAAG 57.800 52.381 31.15 3.62 46.81 1.85
264 265 2.679837 CCAATGCAAGCTACCACTAGTG 59.320 50.000 16.34 16.34 0.00 2.74
265 266 2.356125 CCCAATGCAAGCTACCACTAGT 60.356 50.000 0.00 0.00 0.00 2.57
266 267 2.292267 CCCAATGCAAGCTACCACTAG 58.708 52.381 0.00 0.00 0.00 2.57
267 268 1.064758 CCCCAATGCAAGCTACCACTA 60.065 52.381 0.00 0.00 0.00 2.74
268 269 0.323725 CCCCAATGCAAGCTACCACT 60.324 55.000 0.00 0.00 0.00 4.00
269 270 0.323360 TCCCCAATGCAAGCTACCAC 60.323 55.000 0.00 0.00 0.00 4.16
270 271 0.034186 CTCCCCAATGCAAGCTACCA 60.034 55.000 0.00 0.00 0.00 3.25
271 272 0.255890 TCTCCCCAATGCAAGCTACC 59.744 55.000 0.00 0.00 0.00 3.18
272 273 2.128771 TTCTCCCCAATGCAAGCTAC 57.871 50.000 0.00 0.00 0.00 3.58
273 274 2.897271 TTTCTCCCCAATGCAAGCTA 57.103 45.000 0.00 0.00 0.00 3.32
274 275 2.014010 TTTTCTCCCCAATGCAAGCT 57.986 45.000 0.00 0.00 0.00 3.74
275 276 2.837532 TTTTTCTCCCCAATGCAAGC 57.162 45.000 0.00 0.00 0.00 4.01
319 320 6.841229 TGGATACATATGCCCCATAACAAAAA 59.159 34.615 1.58 0.00 46.17 1.94
320 321 6.377080 TGGATACATATGCCCCATAACAAAA 58.623 36.000 1.58 0.00 46.17 2.44
321 322 5.958321 TGGATACATATGCCCCATAACAAA 58.042 37.500 1.58 0.00 46.17 2.83
322 323 5.590976 TGGATACATATGCCCCATAACAA 57.409 39.130 1.58 0.00 46.17 2.83
338 339 5.312895 TGTACAATGGTGGCATATGGATAC 58.687 41.667 4.56 0.00 0.00 2.24
339 340 5.574970 TGTACAATGGTGGCATATGGATA 57.425 39.130 4.56 0.00 0.00 2.59
340 341 4.451891 TGTACAATGGTGGCATATGGAT 57.548 40.909 4.56 0.00 0.00 3.41
341 342 3.941704 TGTACAATGGTGGCATATGGA 57.058 42.857 4.56 0.00 0.00 3.41
342 343 3.305539 GCATGTACAATGGTGGCATATGG 60.306 47.826 0.00 0.00 0.00 2.74
343 344 3.305539 GGCATGTACAATGGTGGCATATG 60.306 47.826 14.01 0.00 37.14 1.78
344 345 2.892852 GGCATGTACAATGGTGGCATAT 59.107 45.455 14.01 0.00 37.14 1.78
345 346 2.305928 GGCATGTACAATGGTGGCATA 58.694 47.619 14.01 0.00 37.14 3.14
346 347 1.113788 GGCATGTACAATGGTGGCAT 58.886 50.000 14.01 0.00 37.14 4.40
347 348 0.969917 GGGCATGTACAATGGTGGCA 60.970 55.000 18.87 0.00 38.72 4.92
348 349 0.684153 AGGGCATGTACAATGGTGGC 60.684 55.000 11.25 11.25 36.52 5.01
349 350 2.727123 TAGGGCATGTACAATGGTGG 57.273 50.000 0.00 0.00 0.00 4.61
350 351 5.277779 CGTAATTAGGGCATGTACAATGGTG 60.278 44.000 0.00 0.00 0.00 4.17
351 352 4.819630 CGTAATTAGGGCATGTACAATGGT 59.180 41.667 0.00 0.00 0.00 3.55
352 353 4.215399 CCGTAATTAGGGCATGTACAATGG 59.785 45.833 11.10 0.00 0.00 3.16
353 354 4.819630 ACCGTAATTAGGGCATGTACAATG 59.180 41.667 21.42 0.12 34.69 2.82
354 355 5.043737 ACCGTAATTAGGGCATGTACAAT 57.956 39.130 21.42 0.00 34.69 2.71
355 356 4.444536 GACCGTAATTAGGGCATGTACAA 58.555 43.478 21.42 0.00 36.59 2.41
356 357 3.181463 GGACCGTAATTAGGGCATGTACA 60.181 47.826 21.42 0.00 38.96 2.90
357 358 3.396560 GGACCGTAATTAGGGCATGTAC 58.603 50.000 21.42 2.07 38.96 2.90
358 359 2.369532 GGGACCGTAATTAGGGCATGTA 59.630 50.000 21.42 0.00 38.96 2.29
359 360 1.142262 GGGACCGTAATTAGGGCATGT 59.858 52.381 21.42 4.64 38.96 3.21
360 361 1.142060 TGGGACCGTAATTAGGGCATG 59.858 52.381 21.42 1.57 38.96 4.06
361 362 1.513858 TGGGACCGTAATTAGGGCAT 58.486 50.000 21.42 5.67 38.96 4.40
362 363 1.287217 TTGGGACCGTAATTAGGGCA 58.713 50.000 21.42 10.61 38.96 5.36
363 364 2.227194 CATTGGGACCGTAATTAGGGC 58.773 52.381 21.42 14.58 34.69 5.19
364 365 3.118186 TCACATTGGGACCGTAATTAGGG 60.118 47.826 20.19 20.19 37.27 3.53
365 366 3.875134 GTCACATTGGGACCGTAATTAGG 59.125 47.826 7.89 0.00 0.00 2.69
366 367 3.554324 CGTCACATTGGGACCGTAATTAG 59.446 47.826 13.33 0.00 31.55 1.73
367 368 3.055963 ACGTCACATTGGGACCGTAATTA 60.056 43.478 13.33 0.00 31.55 1.40
368 369 2.289819 ACGTCACATTGGGACCGTAATT 60.290 45.455 13.33 0.00 31.55 1.40
380 381 5.997129 TCATCAATATGCCATACGTCACATT 59.003 36.000 0.00 0.00 32.76 2.71
384 385 3.987220 CGTCATCAATATGCCATACGTCA 59.013 43.478 0.00 0.00 32.76 4.35
386 387 3.740832 CACGTCATCAATATGCCATACGT 59.259 43.478 0.00 0.00 41.05 3.57
402 403 2.167693 CCTTAACTATGCTCCCACGTCA 59.832 50.000 0.00 0.00 0.00 4.35
405 406 3.536956 TTCCTTAACTATGCTCCCACG 57.463 47.619 0.00 0.00 0.00 4.94
411 412 5.717119 AAGTCCCATTCCTTAACTATGCT 57.283 39.130 0.00 0.00 0.00 3.79
416 417 6.653740 CGTAAGAAAAGTCCCATTCCTTAACT 59.346 38.462 0.00 0.00 43.02 2.24
419 420 5.013391 ACCGTAAGAAAAGTCCCATTCCTTA 59.987 40.000 0.00 0.00 43.02 2.69
420 421 4.202535 ACCGTAAGAAAAGTCCCATTCCTT 60.203 41.667 0.00 0.00 43.02 3.36
426 427 1.770061 ACCACCGTAAGAAAAGTCCCA 59.230 47.619 0.00 0.00 43.02 4.37
439 440 1.733385 AACCCTAACCTAACCACCGT 58.267 50.000 0.00 0.00 0.00 4.83
440 441 2.865119 AAACCCTAACCTAACCACCG 57.135 50.000 0.00 0.00 0.00 4.94
473 474 5.116069 TGAATCAAACCTAAAAGCCGTTC 57.884 39.130 0.00 0.00 0.00 3.95
478 479 7.692705 GTCTAACGATGAATCAAACCTAAAAGC 59.307 37.037 0.00 0.00 0.00 3.51
484 485 5.817816 GGATGTCTAACGATGAATCAAACCT 59.182 40.000 0.00 0.00 0.00 3.50
495 496 3.375299 GCAAAGCTTGGATGTCTAACGAT 59.625 43.478 4.56 0.00 0.00 3.73
511 512 0.444260 GCTGACTAGGTTCGCAAAGC 59.556 55.000 0.00 0.00 0.00 3.51
569 570 1.926561 TTGCCGATCAATCTCGACTG 58.073 50.000 0.00 0.00 41.12 3.51
578 579 3.065233 GCTATCACATGTTTGCCGATCAA 59.935 43.478 0.00 0.00 0.00 2.57
581 582 1.599071 CGCTATCACATGTTTGCCGAT 59.401 47.619 0.00 0.00 0.00 4.18
587 588 1.024046 TGCGGCGCTATCACATGTTT 61.024 50.000 33.26 0.00 0.00 2.83
618 619 9.539825 CACTGCATCTATAAAGAATAAGTGACT 57.460 33.333 0.00 0.00 39.36 3.41
630 631 4.199310 GCCCAAGTCACTGCATCTATAAA 58.801 43.478 0.00 0.00 0.00 1.40
631 632 3.199727 TGCCCAAGTCACTGCATCTATAA 59.800 43.478 0.00 0.00 0.00 0.98
640 641 4.201657 TCATCATTATGCCCAAGTCACTG 58.798 43.478 0.00 0.00 32.76 3.66
736 737 2.656947 AAATATCGGTGTGATGGGGG 57.343 50.000 0.00 0.00 37.99 5.40
737 738 6.648879 AAATAAAATATCGGTGTGATGGGG 57.351 37.500 0.00 0.00 37.99 4.96
753 754 7.490000 TGCTTAAGGAAACGACCAAAATAAAA 58.510 30.769 4.29 0.00 0.00 1.52
758 759 4.200874 TCTGCTTAAGGAAACGACCAAAA 58.799 39.130 4.29 0.00 0.00 2.44
761 762 2.289444 CCTCTGCTTAAGGAAACGACCA 60.289 50.000 4.29 0.00 35.83 4.02
779 780 8.340443 GGTAATTTGACGACCAATTATTACCTC 58.660 37.037 23.15 8.71 45.01 3.85
812 814 0.456628 TTGCCGACGACAATCCGATA 59.543 50.000 0.00 0.00 0.00 2.92
853 855 0.242555 CGGGTTTGAAATTGGGGACG 59.757 55.000 0.00 0.00 0.00 4.79
1073 1089 1.898154 CGAGGAAGGGATTCGGTGT 59.102 57.895 0.00 0.00 0.00 4.16
1219 1235 3.660111 GGAAACAACGCTGCCGCT 61.660 61.111 0.00 0.00 38.22 5.52
1222 1238 3.680786 GGGGGAAACAACGCTGCC 61.681 66.667 0.00 0.00 0.00 4.85
1345 1361 1.079474 TCAGCAGCCGCGAAATGTA 60.079 52.632 8.23 0.00 45.49 2.29
1346 1362 2.358615 TCAGCAGCCGCGAAATGT 60.359 55.556 8.23 0.00 45.49 2.71
1348 1364 2.821366 CCTCAGCAGCCGCGAAAT 60.821 61.111 8.23 0.00 45.49 2.17
1410 1426 1.299648 CTCCCGCAATCCCTTGTCA 59.700 57.895 0.00 0.00 34.69 3.58
1456 1475 2.355115 GGGATTGGCCTTGTCCGT 59.645 61.111 3.32 0.00 36.66 4.69
1458 1477 3.140814 GCGGGATTGGCCTTGTCC 61.141 66.667 3.32 8.73 36.66 4.02
1471 1490 3.416880 AATACCCCACCTGGCGGG 61.417 66.667 13.13 13.13 45.70 6.13
1620 1639 4.704833 AGGCGAACGCAGGTGCAT 62.705 61.111 20.16 0.00 44.11 3.96
1626 1645 4.988598 ACACCCAGGCGAACGCAG 62.989 66.667 20.16 11.81 44.11 5.18
1634 1653 2.435372 TATCCAAATGACACCCAGGC 57.565 50.000 0.00 0.00 0.00 4.85
1640 1659 8.446273 GTCATACTATGCATATCCAAATGACAC 58.554 37.037 24.26 11.69 40.09 3.67
1760 1782 9.167311 CTAGTTGCTAAAGGTCATAGTGAATTT 57.833 33.333 0.00 0.00 0.00 1.82
1860 1882 8.912787 TTAATTAACAGAGCTAGACTTCGAAG 57.087 34.615 23.43 23.43 0.00 3.79
1886 1908 5.483811 TCGACAGTGCACTAATTAATCCAA 58.516 37.500 21.20 0.00 0.00 3.53
1935 1957 9.573133 GTGGGAATTATATTTGAAGAACTGTTG 57.427 33.333 0.00 0.00 0.00 3.33
1955 1979 9.921637 GAAATAGACAAATACAAAATGTGGGAA 57.078 29.630 0.00 0.00 0.00 3.97
1970 1994 7.244886 TCAGACAGATCCTGAAATAGACAAA 57.755 36.000 0.45 0.00 37.68 2.83
2025 2049 9.612620 CCATTCAATAAGTTGTTTACTTCACTC 57.387 33.333 0.00 0.00 43.67 3.51
2056 2080 1.419381 TGCCAAGTGTACCTGTGAGA 58.581 50.000 0.00 0.00 0.00 3.27
2257 2281 6.043243 TGGAGGAGGTTCTTCCATATGAATAC 59.957 42.308 3.65 0.00 46.11 1.89
2528 2554 7.930865 AGCAGAATACAGACTGGAAGAATATTC 59.069 37.037 7.41 7.41 37.43 1.75
2572 2598 4.231273 TGGACAGGGCTAGCAGATATAAA 58.769 43.478 18.24 0.00 0.00 1.40
2591 2617 3.420893 CAAGGCAGAAACATAACCTGGA 58.579 45.455 0.00 0.00 0.00 3.86
2641 2667 2.112507 GCCGGTAGCCCCCATTAC 59.887 66.667 1.90 0.00 34.35 1.89
2644 2670 2.236959 AATTTGCCGGTAGCCCCCAT 62.237 55.000 1.90 0.00 42.71 4.00
2650 2676 0.601057 ACACCAAATTTGCCGGTAGC 59.399 50.000 12.92 0.00 44.14 3.58
2656 2682 2.897326 AGTTCCCTACACCAAATTTGCC 59.103 45.455 12.92 0.00 0.00 4.52
2669 2695 2.224992 TGCTTGAAATGCCAGTTCCCTA 60.225 45.455 2.04 0.00 35.91 3.53
2673 2699 5.066893 TCTCATATGCTTGAAATGCCAGTTC 59.933 40.000 0.00 0.00 35.91 3.01
2817 3369 4.090642 CAGTTAGCGACACATCTCAGTTTC 59.909 45.833 0.00 0.00 0.00 2.78
2834 3386 6.592607 TCAAACCGAGTTAATAAGGCAGTTAG 59.407 38.462 0.00 0.00 0.00 2.34
2838 3390 5.873179 TTCAAACCGAGTTAATAAGGCAG 57.127 39.130 0.00 0.00 0.00 4.85
2841 3393 7.312899 AGCAATTTCAAACCGAGTTAATAAGG 58.687 34.615 0.00 0.00 0.00 2.69
2845 3397 6.744112 TGAAGCAATTTCAAACCGAGTTAAT 58.256 32.000 0.00 0.00 42.69 1.40
2871 3423 7.321271 CAGTTTTGAGCAAAGTAACACGAATAG 59.679 37.037 0.00 0.00 0.00 1.73
2877 3429 5.163652 ACTCCAGTTTTGAGCAAAGTAACAC 60.164 40.000 0.00 0.00 32.98 3.32
2878 3430 4.947388 ACTCCAGTTTTGAGCAAAGTAACA 59.053 37.500 0.00 0.00 32.98 2.41
2888 3440 5.673337 TCAAAATCGACTCCAGTTTTGAG 57.327 39.130 15.00 0.00 42.38 3.02
2903 3455 9.427127 GAGCATAGTCGAGTTTAATTCAAAATC 57.573 33.333 0.00 0.00 37.76 2.17
2920 3472 1.028905 AGACGAGCCAGAGCATAGTC 58.971 55.000 0.00 0.00 43.56 2.59
2993 3545 4.241590 TGTTCGGAACTAGCTCGTTTTA 57.758 40.909 20.53 0.00 0.00 1.52
2998 3550 2.673833 ACTTTGTTCGGAACTAGCTCG 58.326 47.619 20.53 6.94 0.00 5.03
3025 3577 1.807814 CCAGGCCTGGGTAGACTAAT 58.192 55.000 40.24 0.00 46.81 1.73
3063 3615 8.870879 GGTAAACAGATCAAGTAAGTCATGTAC 58.129 37.037 0.00 0.00 0.00 2.90
3074 3626 4.263462 TGAGGCATGGTAAACAGATCAAGT 60.263 41.667 0.00 0.00 0.00 3.16
3075 3627 4.264253 TGAGGCATGGTAAACAGATCAAG 58.736 43.478 0.00 0.00 0.00 3.02
3077 3629 3.998913 TGAGGCATGGTAAACAGATCA 57.001 42.857 0.00 0.00 0.00 2.92
3078 3630 4.825546 CATGAGGCATGGTAAACAGATC 57.174 45.455 0.00 0.00 38.11 2.75
3106 3658 9.734620 CACTTCAACAAAAGAGTCATGAATTTA 57.265 29.630 0.00 0.00 0.00 1.40
3119 3671 6.476380 ACACATGTATTGCACTTCAACAAAAG 59.524 34.615 0.00 0.00 37.53 2.27
3132 3684 3.788333 AAGGCATCACACATGTATTGC 57.212 42.857 0.00 5.52 35.57 3.56
3141 3693 9.884465 GTGATATAAGAATAAAAGGCATCACAC 57.116 33.333 0.00 0.00 39.51 3.82
3144 3696 9.851686 ACAGTGATATAAGAATAAAAGGCATCA 57.148 29.630 0.00 0.00 0.00 3.07
3221 3773 4.170468 ACATAGTCAAATAGCAAGGGGG 57.830 45.455 0.00 0.00 0.00 5.40
3373 3925 3.429135 GGGTCGTCCATCTTCTAACAGAC 60.429 52.174 0.04 0.00 35.00 3.51
3424 3976 5.177696 CCAGTAGCAACTTACTTTCTCACAC 59.822 44.000 0.00 0.00 31.97 3.82
3441 3993 4.327680 ACAAGAAAAGTGGATCCAGTAGC 58.672 43.478 22.61 14.03 0.00 3.58
3491 4044 5.597806 TCTAATGGTAAGCGTAACATGAGG 58.402 41.667 18.72 9.38 36.59 3.86
3604 4157 4.413928 TTGCCACCAAGGGAATCG 57.586 55.556 0.00 0.00 43.52 3.34
3630 4183 3.814283 GTCTACCAGTATCCTCAGTACGG 59.186 52.174 0.00 0.00 0.00 4.02
3722 4275 6.232581 ACTCATGAGAGAAGTAATTGGAGG 57.767 41.667 29.27 0.00 44.98 4.30
3787 4341 7.756395 ATGATTTCAGACAATCACTCAAAGT 57.244 32.000 9.06 0.00 44.19 2.66
3852 4407 5.731599 TTACTACTACTGCGAACTAGCTC 57.268 43.478 0.00 0.00 38.13 4.09
3894 4449 6.504398 GTGAATGACACGGATAGATCAGTAA 58.496 40.000 0.00 0.00 39.78 2.24
3895 4450 6.073327 GTGAATGACACGGATAGATCAGTA 57.927 41.667 0.00 0.00 39.78 2.74
4131 4686 6.767524 ACAAACTACAACTGAAACCAATGA 57.232 33.333 0.00 0.00 0.00 2.57
4224 4779 4.002982 TCTTGTCCTTCAATTCATCCACG 58.997 43.478 0.00 0.00 35.35 4.94
4225 4780 5.964958 TTCTTGTCCTTCAATTCATCCAC 57.035 39.130 0.00 0.00 35.35 4.02
4249 4804 7.704472 CCAAGAACTTGTGTCTATCTCTATGTC 59.296 40.741 12.54 0.00 38.85 3.06
4334 4889 2.697751 ACAGCTGAATCTAGGCCTACAG 59.302 50.000 23.35 19.20 0.00 2.74
4345 4900 7.334421 TGTTATTCCTTAAGTCACAGCTGAATC 59.666 37.037 23.35 9.57 0.00 2.52
4502 5428 4.241590 TCCACATCAAACAACTTCATGC 57.758 40.909 0.00 0.00 0.00 4.06
4507 5433 6.530019 AAGAAGTTCCACATCAAACAACTT 57.470 33.333 0.00 0.00 39.45 2.66
4509 5435 7.595311 AAAAAGAAGTTCCACATCAAACAAC 57.405 32.000 0.00 0.00 0.00 3.32
4796 5722 3.056080 ACCAGGTAAGCACATATCCCAT 58.944 45.455 0.00 0.00 0.00 4.00
4845 5771 6.480763 TCCATATGTTCCTGCAAAGAGTAAA 58.519 36.000 1.24 0.00 0.00 2.01
4946 5872 5.186198 AGAATACCTTCGGAAAATGTCTGG 58.814 41.667 0.00 0.00 36.45 3.86
5028 5954 6.041069 ACTCCTAGAGCTTATAATCACCACAC 59.959 42.308 0.00 0.00 32.04 3.82
5132 6058 9.094578 TGTCTTCCCTATATATCTCTTTTCCAG 57.905 37.037 0.00 0.00 0.00 3.86
5224 6163 6.192044 AGGTCAACCTTTCTTTAGTTCCAAA 58.808 36.000 0.00 0.00 46.09 3.28
5225 6164 5.762279 AGGTCAACCTTTCTTTAGTTCCAA 58.238 37.500 0.00 0.00 46.09 3.53
5226 6165 5.382664 AGGTCAACCTTTCTTTAGTTCCA 57.617 39.130 0.00 0.00 46.09 3.53
5308 6247 0.671781 GATCACAGAACCGCACTGCT 60.672 55.000 0.00 0.00 38.74 4.24
5315 6254 4.552166 AAACTTTGTGATCACAGAACCG 57.448 40.909 26.48 14.17 42.94 4.44
5332 6271 8.268850 ACTTGCAATAACGATCAAGATAAACT 57.731 30.769 0.00 0.00 39.22 2.66
5402 6341 4.823442 ACTTTTGACTGACATTGAGATGCA 59.177 37.500 0.00 0.00 36.72 3.96
5590 8525 6.265876 GGTTTGGGTTCTGACTTGGTTAAATA 59.734 38.462 0.00 0.00 0.00 1.40
5617 8552 1.007849 CAACGGTTCGGGCCTTTTG 60.008 57.895 0.84 0.00 0.00 2.44
5620 8555 4.265056 AGCAACGGTTCGGGCCTT 62.265 61.111 0.84 0.00 33.19 4.35
5640 8575 2.549992 GCCTGTTTGGGTTTGGGATTTC 60.550 50.000 0.00 0.00 36.00 2.17
5881 8817 1.908619 TCCCAGTGCAGAGCATTCTTA 59.091 47.619 0.00 0.00 41.91 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.