Multiple sequence alignment - TraesCS2B01G131600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G131600 chr2B 100.000 5037 0 0 1 5037 98302867 98307903 0.000000e+00 9302
1 TraesCS2B01G131600 chr2A 91.022 2016 121 24 3065 5037 63797191 63799189 0.000000e+00 2665
2 TraesCS2B01G131600 chr2A 81.203 1979 179 100 146 2061 63794379 63796227 0.000000e+00 1415
3 TraesCS2B01G131600 chr2A 89.975 798 51 18 2115 2896 63796389 63797173 0.000000e+00 1003
4 TraesCS2B01G131600 chr2D 88.116 1523 144 29 2882 4387 62613877 62615379 0.000000e+00 1775
5 TraesCS2B01G131600 chr2D 87.548 1044 61 38 1832 2827 62612756 62613778 0.000000e+00 1144
6 TraesCS2B01G131600 chr2D 82.802 1285 83 68 12 1212 62611020 62612250 0.000000e+00 1022
7 TraesCS2B01G131600 chr2D 94.337 671 28 3 4374 5037 62617358 62618025 0.000000e+00 1020
8 TraesCS2B01G131600 chr2D 85.891 404 23 10 1384 1763 62612324 62612717 2.830000e-107 399


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G131600 chr2B 98302867 98307903 5036 False 9302.000000 9302 100.0000 1 5037 1 chr2B.!!$F1 5036
1 TraesCS2B01G131600 chr2A 63794379 63799189 4810 False 1694.333333 2665 87.4000 146 5037 3 chr2A.!!$F1 4891
2 TraesCS2B01G131600 chr2D 62611020 62618025 7005 False 1072.000000 1775 87.7388 12 5037 5 chr2D.!!$F1 5025

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 235 0.035317 TATGGATGGATGCAGACGCC 59.965 55.0 0.00 0.0 37.32 5.68 F
1344 1446 0.178301 GGATCTTTCCCGGTGTCTCC 59.822 60.0 0.00 0.0 35.84 3.71 F
1646 1774 0.534203 AACCTGCACCGTTGTACCTG 60.534 55.0 0.00 0.0 0.00 4.00 F
2311 2573 0.451383 GCATACTGTTGATTGGCGCA 59.549 50.0 10.83 0.0 0.00 6.09 F
3099 3457 0.452784 GCTGTCGTTGCATTTCGGAC 60.453 55.0 0.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2103 2304 0.101759 GTGAAGCCATCGTAGCGGTA 59.898 55.0 0.00 0.0 34.64 4.02 R
2301 2563 0.179076 ACAGATCGATGCGCCAATCA 60.179 50.0 0.54 0.0 0.00 2.57 R
2973 3328 0.608130 CAGTCCGTGTGATTCCTCCA 59.392 55.0 0.00 0.0 0.00 3.86 R
3710 4099 0.109319 GCATCCGCAAACATCCGTTT 60.109 50.0 0.00 0.0 46.38 3.60 R
4714 7105 0.179150 GGTAGAGTGCTCTGCTCACG 60.179 60.0 14.99 0.0 41.26 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.573829 CGTAAGCCTTTGCCGCTTGA 61.574 55.000 5.35 0.00 45.89 3.02
40 41 2.005537 CGCTTGAGTTTGCACGCAC 61.006 57.895 0.00 0.00 31.62 5.34
60 61 2.278857 GCCGATCGTCTCGTGCAT 60.279 61.111 15.09 0.00 46.18 3.96
62 63 1.269444 GCCGATCGTCTCGTGCATAC 61.269 60.000 15.09 0.00 46.18 2.39
91 105 1.336517 TGGAAACAGAAGACGGCTACG 60.337 52.381 0.00 0.00 40.47 3.51
106 120 2.347731 GCTACGAAAGGGAAGGAAGTG 58.652 52.381 0.00 0.00 0.00 3.16
120 134 4.516365 AGGAAGTGGTACTAGACAAACG 57.484 45.455 0.00 0.00 0.00 3.60
158 179 2.199236 CAGTTATCCGGTTAGGCGTTC 58.801 52.381 0.00 0.00 40.77 3.95
181 202 4.209911 CGATCAATCAGCACGTAACATCAT 59.790 41.667 0.00 0.00 0.00 2.45
187 208 0.446222 GCACGTAACATCATGGCGTT 59.554 50.000 2.13 0.00 33.28 4.84
190 211 2.415168 CACGTAACATCATGGCGTTTCT 59.585 45.455 6.07 0.00 33.28 2.52
194 215 3.837213 AACATCATGGCGTTTCTTCTG 57.163 42.857 0.00 0.00 0.00 3.02
195 216 2.783135 ACATCATGGCGTTTCTTCTGT 58.217 42.857 0.00 0.00 0.00 3.41
196 217 3.937814 ACATCATGGCGTTTCTTCTGTA 58.062 40.909 0.00 0.00 0.00 2.74
197 218 4.517285 ACATCATGGCGTTTCTTCTGTAT 58.483 39.130 0.00 0.00 0.00 2.29
198 219 4.333649 ACATCATGGCGTTTCTTCTGTATG 59.666 41.667 0.00 0.00 0.00 2.39
213 234 1.151668 GTATGGATGGATGCAGACGC 58.848 55.000 0.00 0.00 31.10 5.19
214 235 0.035317 TATGGATGGATGCAGACGCC 59.965 55.000 0.00 0.00 37.32 5.68
233 254 1.602237 CAGTGGTTCCGTGGGCTAT 59.398 57.895 0.00 0.00 0.00 2.97
274 295 3.720193 CCTGCGCTGTGTGCTGTC 61.720 66.667 9.73 0.00 40.03 3.51
435 477 4.944372 GATCGTACAGGCCCCGCG 62.944 72.222 0.00 0.00 0.00 6.46
448 490 2.915659 CCGCGCCCTATCCTGGTA 60.916 66.667 0.00 0.00 0.00 3.25
449 491 2.283529 CCGCGCCCTATCCTGGTAT 61.284 63.158 0.00 0.00 0.00 2.73
450 492 1.215647 CGCGCCCTATCCTGGTATC 59.784 63.158 0.00 0.00 0.00 2.24
451 493 1.597461 GCGCCCTATCCTGGTATCC 59.403 63.158 0.00 0.00 0.00 2.59
452 494 1.900545 GCGCCCTATCCTGGTATCCC 61.901 65.000 0.00 0.00 0.00 3.85
453 495 1.265454 CGCCCTATCCTGGTATCCCC 61.265 65.000 0.00 0.00 0.00 4.81
454 496 0.178873 GCCCTATCCTGGTATCCCCA 60.179 60.000 0.00 0.00 42.51 4.96
457 499 2.111384 CCTATCCTGGTATCCCCATCG 58.889 57.143 0.00 0.00 44.15 3.84
461 503 1.006102 CTGGTATCCCCATCGCGTC 60.006 63.158 5.77 0.00 44.15 5.19
496 538 3.479269 GCGTCGCGAAACAGGAGG 61.479 66.667 12.06 0.00 0.00 4.30
497 539 2.809601 CGTCGCGAAACAGGAGGG 60.810 66.667 12.06 0.00 0.00 4.30
590 643 2.560119 CGCGGATCCTCTCTCCCTG 61.560 68.421 10.75 0.00 0.00 4.45
591 644 1.152652 GCGGATCCTCTCTCCCTGA 60.153 63.158 10.75 0.00 0.00 3.86
595 648 0.825840 GATCCTCTCTCCCTGACCCG 60.826 65.000 0.00 0.00 0.00 5.28
598 651 2.045242 TCTCTCCCTGACCCGTCG 60.045 66.667 0.00 0.00 0.00 5.12
599 652 2.361357 CTCTCCCTGACCCGTCGT 60.361 66.667 0.00 0.00 0.00 4.34
605 658 4.456253 CTGACCCGTCGTCGACCG 62.456 72.222 19.29 12.80 45.23 4.79
671 738 1.203237 TCTGTTTCCTCTCTGCTCCCT 60.203 52.381 0.00 0.00 0.00 4.20
672 739 1.206849 CTGTTTCCTCTCTGCTCCCTC 59.793 57.143 0.00 0.00 0.00 4.30
674 741 0.618968 TTTCCTCTCTGCTCCCTCCC 60.619 60.000 0.00 0.00 0.00 4.30
675 742 1.815384 TTCCTCTCTGCTCCCTCCCA 61.815 60.000 0.00 0.00 0.00 4.37
676 743 1.306482 CCTCTCTGCTCCCTCCCAA 60.306 63.158 0.00 0.00 0.00 4.12
677 744 0.693767 CCTCTCTGCTCCCTCCCAAT 60.694 60.000 0.00 0.00 0.00 3.16
691 761 2.582498 CAATCGCGTCCGTCCTCC 60.582 66.667 5.77 0.00 35.54 4.30
717 787 4.348495 TCCCACCCACCTCCCTCC 62.348 72.222 0.00 0.00 0.00 4.30
719 789 4.354943 CCACCCACCTCCCTCCCT 62.355 72.222 0.00 0.00 0.00 4.20
720 790 2.689034 CACCCACCTCCCTCCCTC 60.689 72.222 0.00 0.00 0.00 4.30
761 831 3.390521 ACGCCATCTTCGCCTCCA 61.391 61.111 0.00 0.00 0.00 3.86
762 832 2.125147 CGCCATCTTCGCCTCCAA 60.125 61.111 0.00 0.00 0.00 3.53
763 833 1.745115 CGCCATCTTCGCCTCCAAA 60.745 57.895 0.00 0.00 0.00 3.28
848 926 1.950484 GCTTGATCCACCATCCAACGT 60.950 52.381 0.00 0.00 0.00 3.99
857 936 1.877443 ACCATCCAACGTAACAGCAAC 59.123 47.619 0.00 0.00 0.00 4.17
858 937 1.199097 CCATCCAACGTAACAGCAACC 59.801 52.381 0.00 0.00 0.00 3.77
859 938 1.199097 CATCCAACGTAACAGCAACCC 59.801 52.381 0.00 0.00 0.00 4.11
860 939 0.535553 TCCAACGTAACAGCAACCCC 60.536 55.000 0.00 0.00 0.00 4.95
861 940 0.536460 CCAACGTAACAGCAACCCCT 60.536 55.000 0.00 0.00 0.00 4.79
878 959 4.175489 TCGTCTCTGCGCCGCTAC 62.175 66.667 11.67 2.48 0.00 3.58
937 1018 8.738645 GAATCCTTCCATTGTTACTGTATTCT 57.261 34.615 0.00 0.00 0.00 2.40
938 1019 8.511604 AATCCTTCCATTGTTACTGTATTCTG 57.488 34.615 0.00 0.00 0.00 3.02
939 1020 6.414732 TCCTTCCATTGTTACTGTATTCTGG 58.585 40.000 0.00 0.00 0.00 3.86
940 1021 6.012858 TCCTTCCATTGTTACTGTATTCTGGT 60.013 38.462 0.00 0.00 0.00 4.00
941 1022 6.094048 CCTTCCATTGTTACTGTATTCTGGTG 59.906 42.308 0.00 0.00 0.00 4.17
942 1023 6.367374 TCCATTGTTACTGTATTCTGGTGA 57.633 37.500 0.00 0.00 0.00 4.02
1118 1214 2.361104 GAAATGCCGCTCCCACCA 60.361 61.111 0.00 0.00 0.00 4.17
1216 1318 3.243569 CCATTGCTCCGGTAAACAAAACA 60.244 43.478 0.00 0.00 0.00 2.83
1219 1321 2.753452 TGCTCCGGTAAACAAAACAACA 59.247 40.909 0.00 0.00 0.00 3.33
1221 1323 4.142138 TGCTCCGGTAAACAAAACAACAAT 60.142 37.500 0.00 0.00 0.00 2.71
1225 1327 6.267070 TCCGGTAAACAAAACAACAATCTTC 58.733 36.000 0.00 0.00 0.00 2.87
1229 1331 7.276878 CGGTAAACAAAACAACAATCTTCCTTT 59.723 33.333 0.00 0.00 0.00 3.11
1279 1381 7.849804 TTATACTGCTCTTGTTGATTTCCTC 57.150 36.000 0.00 0.00 0.00 3.71
1280 1382 3.070018 ACTGCTCTTGTTGATTTCCTCG 58.930 45.455 0.00 0.00 0.00 4.63
1281 1383 3.070018 CTGCTCTTGTTGATTTCCTCGT 58.930 45.455 0.00 0.00 0.00 4.18
1284 1386 3.371285 GCTCTTGTTGATTTCCTCGTACC 59.629 47.826 0.00 0.00 0.00 3.34
1285 1387 3.581755 TCTTGTTGATTTCCTCGTACCG 58.418 45.455 0.00 0.00 0.00 4.02
1292 1394 4.823157 TGATTTCCTCGTACCGATTTTGA 58.177 39.130 0.00 0.00 34.61 2.69
1293 1395 4.628333 TGATTTCCTCGTACCGATTTTGAC 59.372 41.667 0.00 0.00 34.61 3.18
1302 1404 1.812093 CGATTTTGACCCCGCGCTA 60.812 57.895 5.56 0.00 0.00 4.26
1322 1424 2.725008 GAGCCTCGCGTGCTATCT 59.275 61.111 22.08 7.77 39.69 1.98
1324 1426 2.064723 GAGCCTCGCGTGCTATCTGA 62.065 60.000 22.08 0.00 39.69 3.27
1326 1428 1.007964 CCTCGCGTGCTATCTGAGG 60.008 63.158 5.77 0.00 40.19 3.86
1328 1430 0.595588 CTCGCGTGCTATCTGAGGAT 59.404 55.000 5.77 0.00 36.07 3.24
1329 1431 0.593618 TCGCGTGCTATCTGAGGATC 59.406 55.000 5.77 0.00 33.71 3.36
1339 1441 1.195115 TCTGAGGATCTTTCCCGGTG 58.805 55.000 0.00 0.00 43.76 4.94
1340 1442 0.905357 CTGAGGATCTTTCCCGGTGT 59.095 55.000 0.00 0.00 43.76 4.16
1341 1443 0.902531 TGAGGATCTTTCCCGGTGTC 59.097 55.000 0.00 0.00 43.76 3.67
1342 1444 1.196012 GAGGATCTTTCCCGGTGTCT 58.804 55.000 0.00 0.00 43.76 3.41
1343 1445 1.137282 GAGGATCTTTCCCGGTGTCTC 59.863 57.143 0.00 0.00 43.76 3.36
1344 1446 0.178301 GGATCTTTCCCGGTGTCTCC 59.822 60.000 0.00 0.00 35.84 3.71
1345 1447 1.196012 GATCTTTCCCGGTGTCTCCT 58.804 55.000 0.00 0.00 0.00 3.69
1346 1448 1.555533 GATCTTTCCCGGTGTCTCCTT 59.444 52.381 0.00 0.00 0.00 3.36
1347 1449 1.430992 TCTTTCCCGGTGTCTCCTTT 58.569 50.000 0.00 0.00 0.00 3.11
1348 1450 1.772453 TCTTTCCCGGTGTCTCCTTTT 59.228 47.619 0.00 0.00 0.00 2.27
1349 1451 2.173996 TCTTTCCCGGTGTCTCCTTTTT 59.826 45.455 0.00 0.00 0.00 1.94
1350 1452 2.265589 TTCCCGGTGTCTCCTTTTTC 57.734 50.000 0.00 0.00 0.00 2.29
1351 1453 1.430992 TCCCGGTGTCTCCTTTTTCT 58.569 50.000 0.00 0.00 0.00 2.52
1352 1454 1.772453 TCCCGGTGTCTCCTTTTTCTT 59.228 47.619 0.00 0.00 0.00 2.52
1353 1455 2.152016 CCCGGTGTCTCCTTTTTCTTC 58.848 52.381 0.00 0.00 0.00 2.87
1365 1467 8.126074 GTCTCCTTTTTCTTCTTCTTTCTGAAC 58.874 37.037 0.00 0.00 0.00 3.18
1366 1468 7.829211 TCTCCTTTTTCTTCTTCTTTCTGAACA 59.171 33.333 0.00 0.00 0.00 3.18
1368 1470 8.802267 TCCTTTTTCTTCTTCTTTCTGAACAAA 58.198 29.630 0.00 0.00 0.00 2.83
1369 1471 9.591792 CCTTTTTCTTCTTCTTTCTGAACAAAT 57.408 29.630 0.00 0.00 0.00 2.32
1373 1475 8.525290 TTCTTCTTCTTTCTGAACAAATTCCT 57.475 30.769 0.00 0.00 33.49 3.36
1374 1476 8.159344 TCTTCTTCTTTCTGAACAAATTCCTC 57.841 34.615 0.00 0.00 33.49 3.71
1375 1477 6.884280 TCTTCTTTCTGAACAAATTCCTCC 57.116 37.500 0.00 0.00 33.49 4.30
1385 1494 1.670811 CAAATTCCTCCGGTGGATTCG 59.329 52.381 25.24 12.75 35.83 3.34
1400 1509 4.953868 TCGTTCCCGGTGTGCACG 62.954 66.667 13.13 0.00 33.95 5.34
1436 1545 1.658717 CTCGGAGCCGCTCGTATTG 60.659 63.158 14.21 2.14 39.59 1.90
1466 1575 1.324383 TTTCCCGGTGCTTTTCTTCC 58.676 50.000 0.00 0.00 0.00 3.46
1537 1665 4.838423 TGACAAACCTAGAAGATGACCAGA 59.162 41.667 0.00 0.00 0.00 3.86
1539 1667 6.183361 TGACAAACCTAGAAGATGACCAGAAA 60.183 38.462 0.00 0.00 0.00 2.52
1541 1669 4.828072 ACCTAGAAGATGACCAGAAACC 57.172 45.455 0.00 0.00 0.00 3.27
1542 1670 4.168101 ACCTAGAAGATGACCAGAAACCA 58.832 43.478 0.00 0.00 0.00 3.67
1543 1671 4.785376 ACCTAGAAGATGACCAGAAACCAT 59.215 41.667 0.00 0.00 0.00 3.55
1599 1727 1.689959 CATTTCAGTTGCTTCACGCC 58.310 50.000 0.00 0.00 38.05 5.68
1636 1764 0.895100 TTCTGCATGGAACCTGCACC 60.895 55.000 11.67 0.00 44.30 5.01
1646 1774 0.534203 AACCTGCACCGTTGTACCTG 60.534 55.000 0.00 0.00 0.00 4.00
1652 1780 2.740826 CCGTTGTACCTGCACCCG 60.741 66.667 0.00 0.00 0.00 5.28
1654 1782 3.053896 GTTGTACCTGCACCCGGC 61.054 66.667 0.00 0.00 45.13 6.13
1655 1783 3.246112 TTGTACCTGCACCCGGCT 61.246 61.111 0.00 0.00 45.15 5.52
1658 1786 2.038837 GTACCTGCACCCGGCTTTC 61.039 63.158 0.00 0.00 45.15 2.62
1676 1808 2.823829 CGGTATTCTGCAAGGCGGC 61.824 63.158 0.00 0.00 34.49 6.53
1727 1859 2.222886 CACATTTTACCACGTCCACCA 58.777 47.619 0.00 0.00 0.00 4.17
1743 1875 6.106673 CGTCCACCAATTTCATCTTACTACT 58.893 40.000 0.00 0.00 0.00 2.57
1751 1883 8.821894 CCAATTTCATCTTACTACTAGCTTGTC 58.178 37.037 3.45 0.00 0.00 3.18
1795 1927 1.064685 CCAGCTTCTCCCGGGTTATTT 60.065 52.381 22.86 0.00 0.00 1.40
1796 1928 2.171870 CCAGCTTCTCCCGGGTTATTTA 59.828 50.000 22.86 0.00 0.00 1.40
1797 1929 3.181443 CCAGCTTCTCCCGGGTTATTTAT 60.181 47.826 22.86 0.00 0.00 1.40
1800 1932 3.751518 CTTCTCCCGGGTTATTTATGGG 58.248 50.000 22.86 0.00 41.43 4.00
1801 1933 2.779163 TCTCCCGGGTTATTTATGGGT 58.221 47.619 22.86 0.00 40.86 4.51
1816 1948 9.585369 TTATTTATGGGTGAAGATGCATCAATA 57.415 29.630 27.81 14.99 0.00 1.90
1817 1949 7.894753 TTTATGGGTGAAGATGCATCAATAA 57.105 32.000 27.81 15.06 0.00 1.40
1820 1952 5.263599 TGGGTGAAGATGCATCAATAAAGT 58.736 37.500 27.81 2.86 0.00 2.66
1885 2017 3.463704 ACCCAGGATCCCCTAGATTTTTC 59.536 47.826 8.55 0.00 42.02 2.29
1887 2019 4.168871 CCCAGGATCCCCTAGATTTTTCTT 59.831 45.833 8.55 0.00 42.02 2.52
1888 2020 5.372661 CCCAGGATCCCCTAGATTTTTCTTA 59.627 44.000 8.55 0.00 42.02 2.10
1891 2027 7.285629 CCAGGATCCCCTAGATTTTTCTTAAAC 59.714 40.741 8.55 0.00 42.02 2.01
1907 2043 5.902681 TCTTAAACATACATCTCCTCACCG 58.097 41.667 0.00 0.00 0.00 4.94
1942 2079 2.225491 TCGTGTTGCCATTTTCTGTAGC 59.775 45.455 0.00 0.00 0.00 3.58
1976 2120 6.748132 AGGTGTTGTAACCATGAAGAAATTG 58.252 36.000 0.00 0.00 43.20 2.32
1981 2125 8.783093 TGTTGTAACCATGAAGAAATTGTAGAG 58.217 33.333 0.00 0.00 0.00 2.43
1996 2143 2.208431 GTAGAGTCAGCCATCATGTGC 58.792 52.381 0.00 0.00 0.00 4.57
2003 2150 1.132453 CAGCCATCATGTGCTTGACAG 59.868 52.381 4.75 0.00 38.23 3.51
2006 2153 2.938314 GCCATCATGTGCTTGACAGAGA 60.938 50.000 0.00 0.00 38.23 3.10
2092 2293 0.807667 CAGCTTGTAGGCGCCACTAG 60.808 60.000 31.54 27.07 37.29 2.57
2093 2294 2.174319 GCTTGTAGGCGCCACTAGC 61.174 63.158 31.48 31.48 37.54 3.42
2101 2302 3.912907 CGCCACTAGCCCCCTACG 61.913 72.222 0.00 0.00 38.78 3.51
2102 2303 4.237207 GCCACTAGCCCCCTACGC 62.237 72.222 0.00 0.00 34.35 4.42
2103 2304 2.444140 CCACTAGCCCCCTACGCT 60.444 66.667 0.00 0.00 40.45 5.07
2104 2305 1.152610 CCACTAGCCCCCTACGCTA 60.153 63.158 0.00 0.00 37.79 4.26
2105 2306 1.461911 CCACTAGCCCCCTACGCTAC 61.462 65.000 0.00 0.00 37.79 3.58
2106 2307 1.152589 ACTAGCCCCCTACGCTACC 60.153 63.158 0.00 0.00 37.79 3.18
2111 2312 2.559202 CCCCCTACGCTACCGCTAC 61.559 68.421 0.00 0.00 38.22 3.58
2152 2408 3.007614 ACTTTACTGTGGGCACGTCTAAT 59.992 43.478 0.00 0.00 0.00 1.73
2193 2449 3.299340 TCTAAGAGTCAAAGTGCCGAC 57.701 47.619 0.00 0.00 0.00 4.79
2194 2450 2.626266 TCTAAGAGTCAAAGTGCCGACA 59.374 45.455 0.00 0.00 34.48 4.35
2210 2472 7.578852 AGTGCCGACAAAAACTATTAGTAAAC 58.421 34.615 0.00 0.00 0.00 2.01
2307 2569 3.181493 GCAAGGAGCATACTGTTGATTGG 60.181 47.826 0.00 0.00 44.79 3.16
2308 2570 2.648059 AGGAGCATACTGTTGATTGGC 58.352 47.619 0.00 0.00 0.00 4.52
2309 2571 1.331756 GGAGCATACTGTTGATTGGCG 59.668 52.381 0.00 0.00 0.00 5.69
2310 2572 0.734889 AGCATACTGTTGATTGGCGC 59.265 50.000 0.00 0.00 0.00 6.53
2311 2573 0.451383 GCATACTGTTGATTGGCGCA 59.549 50.000 10.83 0.00 0.00 6.09
2312 2574 1.066002 GCATACTGTTGATTGGCGCAT 59.934 47.619 10.83 0.00 0.00 4.73
2313 2575 2.855953 GCATACTGTTGATTGGCGCATC 60.856 50.000 10.83 5.07 0.00 3.91
2314 2576 1.006086 TACTGTTGATTGGCGCATCG 58.994 50.000 10.83 0.00 0.00 3.84
2329 2591 2.288091 CGCATCGATCTGTTCCTCTGAT 60.288 50.000 0.00 0.00 37.42 2.90
2463 2730 5.999205 TCCAACTGGCATTGTGAATATTT 57.001 34.783 0.00 0.00 34.44 1.40
2464 2731 6.357579 TCCAACTGGCATTGTGAATATTTT 57.642 33.333 0.00 0.00 34.44 1.82
2508 2778 8.849168 TCATATATTACCTTTCATGCTTGGTTG 58.151 33.333 8.26 1.87 34.33 3.77
2509 2779 8.632679 CATATATTACCTTTCATGCTTGGTTGT 58.367 33.333 8.26 0.00 34.33 3.32
2511 2781 6.909550 ATTACCTTTCATGCTTGGTTGTTA 57.090 33.333 8.26 0.00 34.33 2.41
2513 2783 4.215109 ACCTTTCATGCTTGGTTGTTAGT 58.785 39.130 0.00 0.00 0.00 2.24
2514 2784 4.649218 ACCTTTCATGCTTGGTTGTTAGTT 59.351 37.500 0.00 0.00 0.00 2.24
2515 2785 4.984161 CCTTTCATGCTTGGTTGTTAGTTG 59.016 41.667 0.00 0.00 0.00 3.16
2517 2787 4.829064 TCATGCTTGGTTGTTAGTTGAC 57.171 40.909 0.00 0.00 0.00 3.18
2518 2788 4.203226 TCATGCTTGGTTGTTAGTTGACA 58.797 39.130 0.00 0.00 0.00 3.58
2519 2789 4.642437 TCATGCTTGGTTGTTAGTTGACAA 59.358 37.500 0.00 0.00 37.20 3.18
2520 2790 5.301551 TCATGCTTGGTTGTTAGTTGACAAT 59.698 36.000 0.00 0.00 41.18 2.71
2522 2792 5.587289 TGCTTGGTTGTTAGTTGACAATTC 58.413 37.500 0.00 0.00 41.18 2.17
2523 2793 5.126222 TGCTTGGTTGTTAGTTGACAATTCA 59.874 36.000 0.00 0.00 41.18 2.57
2524 2794 6.183360 TGCTTGGTTGTTAGTTGACAATTCAT 60.183 34.615 0.00 0.00 41.18 2.57
2525 2795 6.701400 GCTTGGTTGTTAGTTGACAATTCATT 59.299 34.615 0.00 0.00 41.18 2.57
2526 2796 7.865385 GCTTGGTTGTTAGTTGACAATTCATTA 59.135 33.333 0.00 0.00 41.18 1.90
2631 2901 1.357079 AGGCCAAGAAGCTCCTTGAAT 59.643 47.619 15.15 0.00 44.66 2.57
2836 3106 5.859824 AAAGCGAAAACACATTTACGTTC 57.140 34.783 0.00 0.00 0.00 3.95
2844 3114 7.477422 CGAAAACACATTTACGTTCTCAATAGG 59.523 37.037 0.00 0.00 0.00 2.57
2897 3252 3.584848 GGATGCTCCTACATTAGATGGGT 59.415 47.826 0.00 0.00 32.53 4.51
2905 3260 7.527196 GCTCCTACATTAGATGGGTTAAGCATA 60.527 40.741 7.03 0.00 33.60 3.14
2915 3270 4.730966 TGGGTTAAGCATACTGGTTTCAA 58.269 39.130 7.03 0.00 39.08 2.69
2918 3273 4.403453 GTTAAGCATACTGGTTTCAAGCG 58.597 43.478 0.00 0.00 39.08 4.68
2944 3299 4.843220 AGGCTTCAACAAGTGAAATCAG 57.157 40.909 0.00 0.00 45.67 2.90
2946 3301 5.376625 AGGCTTCAACAAGTGAAATCAGTA 58.623 37.500 0.00 0.00 45.67 2.74
2947 3302 5.827797 AGGCTTCAACAAGTGAAATCAGTAA 59.172 36.000 0.00 0.00 45.67 2.24
2948 3303 6.016777 AGGCTTCAACAAGTGAAATCAGTAAG 60.017 38.462 0.00 0.00 45.67 2.34
2949 3304 5.626955 GCTTCAACAAGTGAAATCAGTAAGC 59.373 40.000 6.84 6.84 45.67 3.09
2950 3305 5.689383 TCAACAAGTGAAATCAGTAAGCC 57.311 39.130 0.00 0.00 31.51 4.35
2952 3307 4.373156 ACAAGTGAAATCAGTAAGCCCT 57.627 40.909 0.00 0.00 0.00 5.19
2953 3308 5.499004 ACAAGTGAAATCAGTAAGCCCTA 57.501 39.130 0.00 0.00 0.00 3.53
2954 3309 5.491982 ACAAGTGAAATCAGTAAGCCCTAG 58.508 41.667 0.00 0.00 0.00 3.02
2955 3310 5.013183 ACAAGTGAAATCAGTAAGCCCTAGT 59.987 40.000 0.00 0.00 0.00 2.57
2956 3311 6.212791 ACAAGTGAAATCAGTAAGCCCTAGTA 59.787 38.462 0.00 0.00 0.00 1.82
2960 3315 8.589338 AGTGAAATCAGTAAGCCCTAGTATATG 58.411 37.037 0.00 0.00 0.00 1.78
2961 3316 7.819900 GTGAAATCAGTAAGCCCTAGTATATGG 59.180 40.741 0.00 0.00 0.00 2.74
2962 3317 7.512746 TGAAATCAGTAAGCCCTAGTATATGGT 59.487 37.037 0.00 0.00 0.00 3.55
2964 3319 8.967779 AATCAGTAAGCCCTAGTATATGGTAA 57.032 34.615 0.00 0.00 0.00 2.85
2965 3320 8.596781 ATCAGTAAGCCCTAGTATATGGTAAG 57.403 38.462 0.00 0.00 0.00 2.34
2966 3321 7.533083 TCAGTAAGCCCTAGTATATGGTAAGT 58.467 38.462 0.00 0.00 0.00 2.24
2967 3322 7.450634 TCAGTAAGCCCTAGTATATGGTAAGTG 59.549 40.741 0.00 0.00 0.00 3.16
2968 3323 5.485209 AAGCCCTAGTATATGGTAAGTGC 57.515 43.478 0.00 0.00 0.00 4.40
2969 3324 4.489737 AGCCCTAGTATATGGTAAGTGCA 58.510 43.478 0.00 0.00 0.00 4.57
2970 3325 4.283722 AGCCCTAGTATATGGTAAGTGCAC 59.716 45.833 9.40 9.40 0.00 4.57
2971 3326 4.039973 GCCCTAGTATATGGTAAGTGCACA 59.960 45.833 21.04 0.00 0.00 4.57
2972 3327 5.280011 GCCCTAGTATATGGTAAGTGCACAT 60.280 44.000 21.04 10.23 0.00 3.21
2973 3328 6.744339 GCCCTAGTATATGGTAAGTGCACATT 60.744 42.308 21.04 12.66 0.00 2.71
2974 3329 6.650807 CCCTAGTATATGGTAAGTGCACATTG 59.349 42.308 21.04 0.00 0.00 2.82
2975 3330 6.650807 CCTAGTATATGGTAAGTGCACATTGG 59.349 42.308 21.04 0.38 0.00 3.16
2991 3346 1.348064 TTGGAGGAATCACACGGACT 58.652 50.000 0.00 0.00 0.00 3.85
2992 3347 0.608130 TGGAGGAATCACACGGACTG 59.392 55.000 0.00 0.00 0.00 3.51
2999 3354 3.119101 GGAATCACACGGACTGTACTCAT 60.119 47.826 0.00 0.00 0.00 2.90
3002 3357 0.895530 ACACGGACTGTACTCATGGG 59.104 55.000 0.00 0.00 0.00 4.00
3004 3359 1.548719 CACGGACTGTACTCATGGGAA 59.451 52.381 0.00 0.00 0.00 3.97
3007 3362 3.021695 CGGACTGTACTCATGGGAAGTA 58.978 50.000 0.00 0.00 0.00 2.24
3019 3374 5.630121 TCATGGGAAGTATGTTTGAACTGT 58.370 37.500 0.00 0.00 0.00 3.55
3026 3381 8.548721 GGGAAGTATGTTTGAACTGTATTATCG 58.451 37.037 0.00 0.00 0.00 2.92
3057 3415 8.632679 TCTAGTTAGTTCTTTAACCTGAAACGA 58.367 33.333 0.00 0.00 36.15 3.85
3086 3444 9.690434 GTAAAACTATCAAAATCTTAGCTGTCG 57.310 33.333 0.00 0.00 0.00 4.35
3096 3454 2.411748 TCTTAGCTGTCGTTGCATTTCG 59.588 45.455 0.00 0.00 0.00 3.46
3099 3457 0.452784 GCTGTCGTTGCATTTCGGAC 60.453 55.000 0.00 0.00 0.00 4.79
3102 3460 1.262950 TGTCGTTGCATTTCGGACAAG 59.737 47.619 0.00 0.00 0.00 3.16
3116 3475 8.840321 CATTTCGGACAAGATAATAGTTGGATT 58.160 33.333 0.00 0.00 0.00 3.01
3159 3519 4.890158 TGACCAAAAGCATCTACTCTGA 57.110 40.909 0.00 0.00 0.00 3.27
3162 3522 4.583871 ACCAAAAGCATCTACTCTGAAGG 58.416 43.478 0.00 0.00 0.00 3.46
3308 3668 1.588403 CGAGACTGCGATGGAGCTG 60.588 63.158 0.00 0.00 41.08 4.24
3332 3692 0.718343 GTGACTGCTCGCTCACATTC 59.282 55.000 6.46 0.00 37.36 2.67
3350 3710 1.374125 CGATGACGACCAGCCAACA 60.374 57.895 0.00 0.00 42.66 3.33
3477 3863 3.309682 CGGATGCCAACATACACTAGTTG 59.690 47.826 0.00 0.00 43.51 3.16
3478 3864 4.513442 GGATGCCAACATACACTAGTTGA 58.487 43.478 6.85 0.00 46.01 3.18
3525 3914 4.905412 ACTTCTCGATCTTTTGTAACGC 57.095 40.909 0.00 0.00 0.00 4.84
3534 3923 6.795114 TCGATCTTTTGTAACGCTTCAATTTC 59.205 34.615 0.00 0.00 0.00 2.17
3571 3960 5.003160 CAGGACACAATGTTTGATCCAGTA 58.997 41.667 13.76 0.00 39.98 2.74
3610 3999 5.335897 CCACATATTTTGCTACTTGTGCTGT 60.336 40.000 0.00 0.00 34.57 4.40
3706 4095 6.929606 GCCGACAGGTATAAATATTCAGTTCT 59.070 38.462 0.00 0.00 40.50 3.01
3710 4099 9.817809 GACAGGTATAAATATTCAGTTCTGTCA 57.182 33.333 22.36 0.00 43.71 3.58
3714 4103 9.916397 GGTATAAATATTCAGTTCTGTCAAACG 57.084 33.333 0.00 0.00 34.27 3.60
3752 4141 1.906574 AGCCGACTGACCTAATTTCCA 59.093 47.619 0.00 0.00 0.00 3.53
3755 4144 3.873910 CCGACTGACCTAATTTCCACAT 58.126 45.455 0.00 0.00 0.00 3.21
3757 4146 4.332819 CCGACTGACCTAATTTCCACATTC 59.667 45.833 0.00 0.00 0.00 2.67
3769 4158 1.570857 CCACATTCCAGGCTGGGGTA 61.571 60.000 32.23 18.48 38.32 3.69
3814 4203 3.193691 ACGAGCTGAACATGCTACTAAGT 59.806 43.478 0.00 0.00 41.30 2.24
3830 4219 7.341256 TGCTACTAAGTTATAGGTAAGTGCACT 59.659 37.037 15.25 15.25 0.00 4.40
3831 4220 7.648510 GCTACTAAGTTATAGGTAAGTGCACTG 59.351 40.741 22.49 4.75 0.00 3.66
3843 4232 2.222027 AGTGCACTGCCTAACAAGTTC 58.778 47.619 20.97 0.00 0.00 3.01
3845 4234 3.071023 AGTGCACTGCCTAACAAGTTCTA 59.929 43.478 20.97 0.00 0.00 2.10
3851 4240 5.758296 CACTGCCTAACAAGTTCTAAGTGAA 59.242 40.000 10.15 0.00 35.63 3.18
3852 4241 6.428159 CACTGCCTAACAAGTTCTAAGTGAAT 59.572 38.462 10.15 0.00 36.99 2.57
3889 4279 8.186821 CAGAAAAAGAACATGTTTCTGTCTCTT 58.813 33.333 21.39 12.84 46.84 2.85
3891 4281 7.396540 AAAAGAACATGTTTCTGTCTCTTGT 57.603 32.000 13.36 1.80 32.20 3.16
3895 4285 6.426328 AGAACATGTTTCTGTCTCTTGTGATC 59.574 38.462 13.36 0.00 0.00 2.92
3901 4292 6.037500 TGTTTCTGTCTCTTGTGATCAGTTTG 59.962 38.462 0.00 0.00 0.00 2.93
3905 4296 4.811024 TGTCTCTTGTGATCAGTTTGTCAC 59.189 41.667 0.00 0.00 43.81 3.67
3952 4343 1.203087 TGTCCGGAGTACTGGGAGAAA 60.203 52.381 3.06 0.58 42.48 2.52
4027 4418 1.908619 TCCCAGTGCAGAGCATTCTTA 59.091 47.619 0.00 0.00 41.91 2.10
4108 4499 5.591877 GGTTAGATCTTGATTTGGCATGACT 59.408 40.000 0.00 0.00 0.00 3.41
4109 4500 6.459298 GGTTAGATCTTGATTTGGCATGACTG 60.459 42.308 0.00 0.00 0.00 3.51
4268 4660 2.549992 GCCTGTTTGGGTTTGGGATTTC 60.550 50.000 0.00 0.00 36.00 2.17
4288 4680 4.265056 AGCAACGGTTCGGGCCTT 62.265 61.111 0.84 0.00 33.19 4.35
4291 4683 1.007849 CAACGGTTCGGGCCTTTTG 60.008 57.895 0.84 0.00 0.00 2.44
4318 4710 6.265876 GGTTTGGGTTCTGACTTGGTTAAATA 59.734 38.462 0.00 0.00 0.00 1.40
4506 6894 4.823442 ACTTTTGACTGACATTGAGATGCA 59.177 37.500 0.00 0.00 36.72 3.96
4576 6964 8.268850 ACTTGCAATAACGATCAAGATAAACT 57.731 30.769 0.00 0.00 39.22 2.66
4593 6981 4.552166 AAACTTTGTGATCACAGAACCG 57.448 40.909 26.48 14.17 42.94 4.44
4600 6988 0.671781 GATCACAGAACCGCACTGCT 60.672 55.000 0.00 0.00 38.74 4.24
4682 7070 5.382664 AGGTCAACCTTTCTTTAGTTCCA 57.617 39.130 0.00 0.00 46.09 3.53
4683 7071 5.762279 AGGTCAACCTTTCTTTAGTTCCAA 58.238 37.500 0.00 0.00 46.09 3.53
4684 7072 6.192044 AGGTCAACCTTTCTTTAGTTCCAAA 58.808 36.000 0.00 0.00 46.09 3.28
4776 7177 9.094578 TGTCTTCCCTATATATCTCTTTTCCAG 57.905 37.037 0.00 0.00 0.00 3.86
4880 7281 6.041069 ACTCCTAGAGCTTATAATCACCACAC 59.959 42.308 0.00 0.00 32.04 3.82
4962 7363 5.186198 AGAATACCTTCGGAAAATGTCTGG 58.814 41.667 0.00 0.00 36.45 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.053896 AAAGGCTTACGTGGCGGC 61.054 61.111 0.00 0.00 37.59 6.53
3 4 2.867472 CAAAGGCTTACGTGGCGG 59.133 61.111 0.00 0.00 37.59 6.13
5 6 2.566529 GGCAAAGGCTTACGTGGC 59.433 61.111 0.00 3.96 40.87 5.01
6 7 2.867472 CGGCAAAGGCTTACGTGG 59.133 61.111 0.00 0.00 40.87 4.94
7 8 2.175811 GCGGCAAAGGCTTACGTG 59.824 61.111 16.53 6.86 40.87 4.49
8 9 2.032071 AGCGGCAAAGGCTTACGT 59.968 55.556 16.53 0.00 37.50 3.57
13 14 1.109323 AAACTCAAGCGGCAAAGGCT 61.109 50.000 1.45 0.00 44.02 4.58
14 15 0.940991 CAAACTCAAGCGGCAAAGGC 60.941 55.000 1.45 0.00 40.13 4.35
15 16 0.940991 GCAAACTCAAGCGGCAAAGG 60.941 55.000 1.45 0.00 0.00 3.11
60 61 4.282449 TCTTCTGTTTCCAGTTCCATCGTA 59.718 41.667 0.00 0.00 39.82 3.43
62 63 3.433615 GTCTTCTGTTTCCAGTTCCATCG 59.566 47.826 0.00 0.00 39.82 3.84
84 85 0.248289 TTCCTTCCCTTTCGTAGCCG 59.752 55.000 0.00 0.00 0.00 5.52
91 105 4.776308 TCTAGTACCACTTCCTTCCCTTTC 59.224 45.833 0.00 0.00 0.00 2.62
106 120 2.154389 CGTGTTGCGTTTGTCTAGTACC 59.846 50.000 0.00 0.00 35.54 3.34
127 141 1.090052 GGATAACTGCCTCCGTGCAC 61.090 60.000 6.82 6.82 36.04 4.57
129 143 4.126524 GGATAACTGCCTCCGTGC 57.873 61.111 0.00 0.00 0.00 5.34
158 179 3.551485 TGATGTTACGTGCTGATTGATCG 59.449 43.478 0.00 0.00 0.00 3.69
181 202 3.270027 CATCCATACAGAAGAAACGCCA 58.730 45.455 0.00 0.00 0.00 5.69
187 208 4.409901 TCTGCATCCATCCATACAGAAGAA 59.590 41.667 0.00 0.00 31.60 2.52
190 211 3.493176 CGTCTGCATCCATCCATACAGAA 60.493 47.826 0.00 0.00 36.05 3.02
194 215 1.151668 GCGTCTGCATCCATCCATAC 58.848 55.000 0.00 0.00 42.15 2.39
195 216 0.035317 GGCGTCTGCATCCATCCATA 59.965 55.000 0.00 0.00 45.35 2.74
196 217 1.228063 GGCGTCTGCATCCATCCAT 60.228 57.895 0.00 0.00 45.35 3.41
197 218 2.190313 GGCGTCTGCATCCATCCA 59.810 61.111 0.00 0.00 45.35 3.41
198 219 2.592861 GGGCGTCTGCATCCATCC 60.593 66.667 0.00 0.00 45.35 3.51
214 235 1.910580 ATAGCCCACGGAACCACTGG 61.911 60.000 0.00 0.00 0.00 4.00
233 254 4.513442 CTCAAACATAAACCTGGATCGGA 58.487 43.478 0.00 0.00 0.00 4.55
273 294 0.895100 GTTGCAATCCTGTGCTGGGA 60.895 55.000 0.59 0.00 45.17 4.37
274 295 1.588082 GTTGCAATCCTGTGCTGGG 59.412 57.895 0.59 0.00 45.17 4.45
302 340 0.609151 TCGCCGGAATGGAGTTTACA 59.391 50.000 5.05 0.00 42.00 2.41
395 433 2.046285 ATTTTCCAAGCGCCGGGAG 61.046 57.895 16.13 0.00 34.02 4.30
396 434 2.034999 ATTTTCCAAGCGCCGGGA 59.965 55.556 13.19 13.19 0.00 5.14
397 435 2.181525 CATTTTCCAAGCGCCGGG 59.818 61.111 13.16 10.94 0.00 5.73
398 436 2.181525 CCATTTTCCAAGCGCCGG 59.818 61.111 2.29 5.19 0.00 6.13
399 437 2.181525 CCCATTTTCCAAGCGCCG 59.818 61.111 2.29 0.00 0.00 6.46
400 438 0.965363 TCTCCCATTTTCCAAGCGCC 60.965 55.000 2.29 0.00 0.00 6.53
401 439 1.066152 GATCTCCCATTTTCCAAGCGC 59.934 52.381 0.00 0.00 0.00 5.92
402 440 1.331756 CGATCTCCCATTTTCCAAGCG 59.668 52.381 0.00 0.00 0.00 4.68
403 441 2.369394 ACGATCTCCCATTTTCCAAGC 58.631 47.619 0.00 0.00 0.00 4.01
404 442 4.513442 TGTACGATCTCCCATTTTCCAAG 58.487 43.478 0.00 0.00 0.00 3.61
405 443 4.513442 CTGTACGATCTCCCATTTTCCAA 58.487 43.478 0.00 0.00 0.00 3.53
406 444 3.118408 CCTGTACGATCTCCCATTTTCCA 60.118 47.826 0.00 0.00 0.00 3.53
410 452 1.141053 GGCCTGTACGATCTCCCATTT 59.859 52.381 0.00 0.00 0.00 2.32
446 488 1.664965 GCTGACGCGATGGGGATAC 60.665 63.158 15.93 0.00 0.00 2.24
447 489 2.734591 GCTGACGCGATGGGGATA 59.265 61.111 15.93 0.00 0.00 2.59
481 523 1.737008 GTCCCTCCTGTTTCGCGAC 60.737 63.158 9.15 0.00 0.00 5.19
486 528 0.666577 CGTGTCGTCCCTCCTGTTTC 60.667 60.000 0.00 0.00 0.00 2.78
494 536 0.878961 GTTTGCTTCGTGTCGTCCCT 60.879 55.000 0.00 0.00 0.00 4.20
496 538 1.200839 CGTTTGCTTCGTGTCGTCC 59.799 57.895 0.00 0.00 0.00 4.79
497 539 0.158928 CTCGTTTGCTTCGTGTCGTC 59.841 55.000 0.00 0.00 0.00 4.20
576 618 0.825840 CGGGTCAGGGAGAGAGGATC 60.826 65.000 0.00 0.00 0.00 3.36
583 636 2.360852 GACGACGGGTCAGGGAGA 60.361 66.667 0.00 0.00 45.36 3.71
671 738 4.137872 GGACGGACGCGATTGGGA 62.138 66.667 15.93 0.00 0.00 4.37
672 739 4.143333 AGGACGGACGCGATTGGG 62.143 66.667 15.93 0.00 0.00 4.12
674 741 2.582498 GGAGGACGGACGCGATTG 60.582 66.667 15.93 3.52 0.00 2.67
675 742 3.064987 CTGGAGGACGGACGCGATT 62.065 63.158 15.93 0.00 0.00 3.34
676 743 3.518998 CTGGAGGACGGACGCGAT 61.519 66.667 15.93 0.00 0.00 4.58
691 761 1.303643 GTGGGTGGGAGGAAAGCTG 60.304 63.158 0.00 0.00 0.00 4.24
717 787 1.006102 AGCGGTTCACGTGAAGAGG 60.006 57.895 30.38 21.62 46.52 3.69
718 788 1.009389 GGAGCGGTTCACGTGAAGAG 61.009 60.000 30.38 25.36 46.52 2.85
719 789 1.006571 GGAGCGGTTCACGTGAAGA 60.007 57.895 30.38 8.72 46.52 2.87
720 790 1.300620 TGGAGCGGTTCACGTGAAG 60.301 57.895 30.38 20.43 46.52 3.02
746 816 1.803289 GTTTGGAGGCGAAGATGGC 59.197 57.895 0.00 0.00 0.00 4.40
805 877 3.628280 GAAAGAGCGTCGCGGAGGT 62.628 63.158 12.30 6.15 0.00 3.85
813 885 0.436531 CAAGCACGAGAAAGAGCGTC 59.563 55.000 0.00 0.00 38.92 5.19
816 888 1.663135 GGATCAAGCACGAGAAAGAGC 59.337 52.381 0.00 0.00 0.00 4.09
848 926 0.606604 GAGACGAGGGGTTGCTGTTA 59.393 55.000 0.00 0.00 0.00 2.41
878 959 2.406616 CGCGGAAGAAATGGTGGGG 61.407 63.158 0.00 0.00 0.00 4.96
922 1003 7.362920 GCCAAATCACCAGAATACAGTAACAAT 60.363 37.037 0.00 0.00 0.00 2.71
924 1005 5.414454 GCCAAATCACCAGAATACAGTAACA 59.586 40.000 0.00 0.00 0.00 2.41
925 1006 5.447279 CGCCAAATCACCAGAATACAGTAAC 60.447 44.000 0.00 0.00 0.00 2.50
927 1008 4.188462 CGCCAAATCACCAGAATACAGTA 58.812 43.478 0.00 0.00 0.00 2.74
928 1009 3.009723 CGCCAAATCACCAGAATACAGT 58.990 45.455 0.00 0.00 0.00 3.55
929 1010 2.223340 GCGCCAAATCACCAGAATACAG 60.223 50.000 0.00 0.00 0.00 2.74
931 1012 1.065551 GGCGCCAAATCACCAGAATAC 59.934 52.381 24.80 0.00 0.00 1.89
932 1013 1.064758 AGGCGCCAAATCACCAGAATA 60.065 47.619 31.54 0.00 0.00 1.75
933 1014 0.323725 AGGCGCCAAATCACCAGAAT 60.324 50.000 31.54 0.00 0.00 2.40
935 1016 0.539438 AAAGGCGCCAAATCACCAGA 60.539 50.000 31.54 0.00 0.00 3.86
937 1018 1.112315 ACAAAGGCGCCAAATCACCA 61.112 50.000 31.54 0.00 0.00 4.17
938 1019 0.033366 AACAAAGGCGCCAAATCACC 59.967 50.000 31.54 0.00 0.00 4.02
939 1020 1.526464 CAAACAAAGGCGCCAAATCAC 59.474 47.619 31.54 0.00 0.00 3.06
940 1021 1.539929 CCAAACAAAGGCGCCAAATCA 60.540 47.619 31.54 0.00 0.00 2.57
941 1022 1.147473 CCAAACAAAGGCGCCAAATC 58.853 50.000 31.54 0.00 0.00 2.17
942 1023 0.884259 GCCAAACAAAGGCGCCAAAT 60.884 50.000 31.54 11.91 43.15 2.32
1118 1214 2.043852 TTTTGTGGTGCGGGGTGT 60.044 55.556 0.00 0.00 0.00 4.16
1147 1243 1.820481 CGGAGGAGGAGGACGAGTC 60.820 68.421 0.00 0.00 0.00 3.36
1148 1244 2.272797 CGGAGGAGGAGGACGAGT 59.727 66.667 0.00 0.00 0.00 4.18
1150 1246 2.271497 GTCGGAGGAGGAGGACGA 59.729 66.667 0.00 0.00 0.00 4.20
1251 1353 8.730680 GGAAATCAACAAGAGCAGTATAAAGAA 58.269 33.333 0.00 0.00 0.00 2.52
1253 1355 8.273780 AGGAAATCAACAAGAGCAGTATAAAG 57.726 34.615 0.00 0.00 0.00 1.85
1255 1357 6.535150 CGAGGAAATCAACAAGAGCAGTATAA 59.465 38.462 0.00 0.00 0.00 0.98
1257 1359 4.872691 CGAGGAAATCAACAAGAGCAGTAT 59.127 41.667 0.00 0.00 0.00 2.12
1258 1360 4.245660 CGAGGAAATCAACAAGAGCAGTA 58.754 43.478 0.00 0.00 0.00 2.74
1259 1361 3.070018 CGAGGAAATCAACAAGAGCAGT 58.930 45.455 0.00 0.00 0.00 4.40
1260 1362 3.070018 ACGAGGAAATCAACAAGAGCAG 58.930 45.455 0.00 0.00 0.00 4.24
1261 1363 3.126001 ACGAGGAAATCAACAAGAGCA 57.874 42.857 0.00 0.00 0.00 4.26
1262 1364 3.371285 GGTACGAGGAAATCAACAAGAGC 59.629 47.826 0.00 0.00 0.00 4.09
1280 1382 1.698714 CGCGGGGTCAAAATCGGTAC 61.699 60.000 0.00 0.00 0.00 3.34
1281 1383 1.448189 CGCGGGGTCAAAATCGGTA 60.448 57.895 0.00 0.00 0.00 4.02
1284 1386 1.812093 TAGCGCGGGGTCAAAATCG 60.812 57.895 8.83 0.00 0.00 3.34
1285 1387 1.719709 GTAGCGCGGGGTCAAAATC 59.280 57.895 8.83 0.00 0.00 2.17
1322 1424 0.902531 GACACCGGGAAAGATCCTCA 59.097 55.000 6.32 0.00 45.77 3.86
1324 1426 1.196012 GAGACACCGGGAAAGATCCT 58.804 55.000 6.32 0.00 45.77 3.24
1326 1428 1.196012 AGGAGACACCGGGAAAGATC 58.804 55.000 6.32 0.00 44.74 2.75
1328 1430 1.430992 AAAGGAGACACCGGGAAAGA 58.569 50.000 6.32 0.00 44.74 2.52
1329 1431 2.271944 AAAAGGAGACACCGGGAAAG 57.728 50.000 6.32 0.00 44.74 2.62
1339 1441 7.793927 TCAGAAAGAAGAAGAAAAAGGAGAC 57.206 36.000 0.00 0.00 0.00 3.36
1340 1442 7.829211 TGTTCAGAAAGAAGAAGAAAAAGGAGA 59.171 33.333 0.00 0.00 36.78 3.71
1341 1443 7.989826 TGTTCAGAAAGAAGAAGAAAAAGGAG 58.010 34.615 0.00 0.00 36.78 3.69
1342 1444 7.938140 TGTTCAGAAAGAAGAAGAAAAAGGA 57.062 32.000 0.00 0.00 36.78 3.36
1343 1445 8.986477 TTTGTTCAGAAAGAAGAAGAAAAAGG 57.014 30.769 0.00 0.00 40.17 3.11
1346 1448 9.586435 GGAATTTGTTCAGAAAGAAGAAGAAAA 57.414 29.630 0.00 0.00 40.17 2.29
1347 1449 8.971073 AGGAATTTGTTCAGAAAGAAGAAGAAA 58.029 29.630 0.00 0.00 40.17 2.52
1348 1450 8.525290 AGGAATTTGTTCAGAAAGAAGAAGAA 57.475 30.769 0.00 0.00 40.17 2.52
1349 1451 7.229506 GGAGGAATTTGTTCAGAAAGAAGAAGA 59.770 37.037 0.00 0.00 40.17 2.87
1350 1452 7.366513 GGAGGAATTTGTTCAGAAAGAAGAAG 58.633 38.462 0.00 0.00 40.17 2.85
1351 1453 6.017109 CGGAGGAATTTGTTCAGAAAGAAGAA 60.017 38.462 0.00 0.00 37.68 2.52
1352 1454 5.470098 CGGAGGAATTTGTTCAGAAAGAAGA 59.530 40.000 0.00 0.00 36.78 2.87
1353 1455 5.693814 CGGAGGAATTTGTTCAGAAAGAAG 58.306 41.667 0.00 0.00 36.78 2.85
1385 1494 2.898343 AACGTGCACACCGGGAAC 60.898 61.111 18.64 0.00 0.00 3.62
1400 1509 0.889186 AGGTGCGGGTCAACATCAAC 60.889 55.000 0.00 0.00 33.90 3.18
1466 1575 5.331876 ACGGACCTATTCAGAAAGAAGAG 57.668 43.478 0.00 0.00 43.55 2.85
1537 1665 1.229428 CACTGACAGCGACATGGTTT 58.771 50.000 1.25 0.00 0.00 3.27
1539 1667 1.669115 GCACTGACAGCGACATGGT 60.669 57.895 1.25 0.00 0.00 3.55
1541 1669 1.229975 TTGGCACTGACAGCGACATG 61.230 55.000 0.00 0.00 0.00 3.21
1542 1670 0.534877 TTTGGCACTGACAGCGACAT 60.535 50.000 0.00 0.00 0.00 3.06
1543 1671 1.153269 TTTGGCACTGACAGCGACA 60.153 52.632 1.25 0.00 0.00 4.35
1599 1727 0.647410 AATTCGTCAAGCTGATCGCG 59.353 50.000 0.00 0.00 45.59 5.87
1636 1764 2.740826 CCGGGTGCAGGTACAACG 60.741 66.667 0.00 0.00 0.00 4.10
1652 1780 1.401905 CCTTGCAGAATACCGAAAGCC 59.598 52.381 0.00 0.00 0.00 4.35
1654 1782 1.062587 CGCCTTGCAGAATACCGAAAG 59.937 52.381 0.00 0.00 0.00 2.62
1655 1783 1.083489 CGCCTTGCAGAATACCGAAA 58.917 50.000 0.00 0.00 0.00 3.46
1658 1786 2.823829 GCCGCCTTGCAGAATACCG 61.824 63.158 0.00 0.00 0.00 4.02
1692 1824 5.893897 AAAATGTGCATGTGGTTTTGTTT 57.106 30.435 0.00 0.00 0.00 2.83
1693 1825 5.295540 GGTAAAATGTGCATGTGGTTTTGTT 59.704 36.000 0.00 0.00 0.00 2.83
1694 1826 4.813697 GGTAAAATGTGCATGTGGTTTTGT 59.186 37.500 0.00 0.00 0.00 2.83
1695 1827 4.813161 TGGTAAAATGTGCATGTGGTTTTG 59.187 37.500 0.00 0.00 0.00 2.44
1727 1859 8.467598 TCGACAAGCTAGTAGTAAGATGAAATT 58.532 33.333 0.00 0.00 0.00 1.82
1766 1898 3.612247 GAGAAGCTGGGCAAGGCGA 62.612 63.158 0.00 0.00 0.00 5.54
1776 1908 2.420058 AAATAACCCGGGAGAAGCTG 57.580 50.000 32.02 0.00 0.00 4.24
1789 1921 7.275888 TGATGCATCTTCACCCATAAATAAC 57.724 36.000 26.32 0.00 0.00 1.89
1795 1927 7.062322 ACTTTATTGATGCATCTTCACCCATA 58.938 34.615 26.32 9.08 0.00 2.74
1796 1928 5.895534 ACTTTATTGATGCATCTTCACCCAT 59.104 36.000 26.32 9.91 0.00 4.00
1797 1929 5.263599 ACTTTATTGATGCATCTTCACCCA 58.736 37.500 26.32 2.97 0.00 4.51
1800 1932 8.186163 TGATTGACTTTATTGATGCATCTTCAC 58.814 33.333 26.32 10.63 0.00 3.18
1801 1933 8.283699 TGATTGACTTTATTGATGCATCTTCA 57.716 30.769 26.32 11.67 0.00 3.02
1816 1948 6.037391 CCACATTTGTTGCTTTGATTGACTTT 59.963 34.615 0.00 0.00 0.00 2.66
1817 1949 5.524646 CCACATTTGTTGCTTTGATTGACTT 59.475 36.000 0.00 0.00 0.00 3.01
1820 1952 4.378774 CCCACATTTGTTGCTTTGATTGA 58.621 39.130 0.00 0.00 0.00 2.57
1885 2017 5.661458 ACGGTGAGGAGATGTATGTTTAAG 58.339 41.667 0.00 0.00 0.00 1.85
1887 2019 4.954202 AGACGGTGAGGAGATGTATGTTTA 59.046 41.667 0.00 0.00 0.00 2.01
1888 2020 3.769844 AGACGGTGAGGAGATGTATGTTT 59.230 43.478 0.00 0.00 0.00 2.83
1891 2027 2.035193 CCAGACGGTGAGGAGATGTATG 59.965 54.545 0.00 0.00 0.00 2.39
1907 2043 3.485743 GCAACACGAATTTTGAACCAGAC 59.514 43.478 0.00 0.00 0.00 3.51
1942 2079 7.547370 TCATGGTTACAACACCTTTTCTTTTTG 59.453 33.333 0.00 0.00 37.75 2.44
1976 2120 2.158986 AGCACATGATGGCTGACTCTAC 60.159 50.000 0.00 0.00 39.30 2.59
1981 2125 1.131883 GTCAAGCACATGATGGCTGAC 59.868 52.381 0.00 11.28 40.93 3.51
1996 2143 2.775890 ACAGCCAACATCTCTGTCAAG 58.224 47.619 0.00 0.00 36.42 3.02
2101 2302 0.940047 GAAGCCATCGTAGCGGTAGC 60.940 60.000 0.00 0.00 45.58 3.58
2102 2303 0.384309 TGAAGCCATCGTAGCGGTAG 59.616 55.000 0.00 0.00 34.64 3.18
2103 2304 0.101759 GTGAAGCCATCGTAGCGGTA 59.898 55.000 0.00 0.00 34.64 4.02
2104 2305 1.153628 GTGAAGCCATCGTAGCGGT 60.154 57.895 0.00 0.00 34.64 5.68
2105 2306 2.230940 CGTGAAGCCATCGTAGCGG 61.231 63.158 0.00 0.00 34.64 5.52
2106 2307 2.860628 GCGTGAAGCCATCGTAGCG 61.861 63.158 0.00 0.00 40.81 4.26
2210 2472 9.962783 AGGTTATACTAGTATTTTGTAAGCGAG 57.037 33.333 20.21 0.00 0.00 5.03
2224 2486 7.455638 TGGTTGGTTGTCTTAGGTTATACTAGT 59.544 37.037 0.00 0.00 0.00 2.57
2301 2563 0.179076 ACAGATCGATGCGCCAATCA 60.179 50.000 0.54 0.00 0.00 2.57
2302 2564 0.940126 AACAGATCGATGCGCCAATC 59.060 50.000 0.54 0.34 0.00 2.67
2303 2565 0.940126 GAACAGATCGATGCGCCAAT 59.060 50.000 0.54 0.00 0.00 3.16
2305 2567 1.521457 GGAACAGATCGATGCGCCA 60.521 57.895 0.54 0.00 0.00 5.69
2307 2569 0.249238 AGAGGAACAGATCGATGCGC 60.249 55.000 0.54 0.00 0.00 6.09
2308 2570 1.066152 TCAGAGGAACAGATCGATGCG 59.934 52.381 0.54 0.00 0.00 4.73
2309 2571 2.879002 TCAGAGGAACAGATCGATGC 57.121 50.000 0.54 0.00 0.00 3.91
2310 2572 3.305950 GGGATCAGAGGAACAGATCGATG 60.306 52.174 0.54 0.00 40.77 3.84
2311 2573 2.896685 GGGATCAGAGGAACAGATCGAT 59.103 50.000 0.00 0.00 40.77 3.59
2312 2574 2.311463 GGGATCAGAGGAACAGATCGA 58.689 52.381 0.00 0.00 40.77 3.59
2313 2575 1.000827 CGGGATCAGAGGAACAGATCG 60.001 57.143 0.00 0.00 40.77 3.69
2314 2576 2.035321 GTCGGGATCAGAGGAACAGATC 59.965 54.545 0.00 0.00 39.67 2.75
2329 2591 6.497785 TTATTAAAAATTGCGAAGTCGGGA 57.502 33.333 2.47 0.00 40.23 5.14
2398 2663 0.678366 TGTCGGCACTTTGTGTGGTT 60.678 50.000 0.00 0.00 46.27 3.67
2400 2665 0.248458 GTTGTCGGCACTTTGTGTGG 60.248 55.000 0.00 0.00 46.27 4.17
2403 2668 2.159448 TCTTTGTTGTCGGCACTTTGTG 60.159 45.455 0.00 0.00 36.51 3.33
2486 2753 7.480760 AACAACCAAGCATGAAAGGTAATAT 57.519 32.000 0.00 0.00 33.15 1.28
2489 2756 5.830991 ACTAACAACCAAGCATGAAAGGTAA 59.169 36.000 0.00 0.00 33.15 2.85
2501 2771 9.743057 TTAATGAATTGTCAACTAACAACCAAG 57.257 29.630 0.00 0.00 41.65 3.61
2543 2813 2.450476 GGGAAGAAACTGCCATCACAT 58.550 47.619 0.00 0.00 28.36 3.21
2631 2901 1.034838 AACCTTGACGCCAAGTGCAA 61.035 50.000 10.70 0.00 46.37 4.08
2645 2915 6.721208 ACCACATGACATATTTCTTGAACCTT 59.279 34.615 10.74 0.00 0.00 3.50
2646 2916 6.248433 ACCACATGACATATTTCTTGAACCT 58.752 36.000 10.74 0.00 0.00 3.50
2897 3252 4.069304 ACGCTTGAAACCAGTATGCTTAA 58.931 39.130 0.00 0.00 31.97 1.85
2905 3260 2.034179 GCCTAAAACGCTTGAAACCAGT 59.966 45.455 0.00 0.00 0.00 4.00
2915 3270 2.949644 ACTTGTTGAAGCCTAAAACGCT 59.050 40.909 0.00 0.00 38.53 5.07
2918 3273 6.978080 TGATTTCACTTGTTGAAGCCTAAAAC 59.022 34.615 0.00 0.00 45.22 2.43
2944 3299 6.014840 TGCACTTACCATATACTAGGGCTTAC 60.015 42.308 0.00 0.00 36.26 2.34
2946 3301 4.905456 TGCACTTACCATATACTAGGGCTT 59.095 41.667 0.00 0.00 36.26 4.35
2947 3302 4.283722 GTGCACTTACCATATACTAGGGCT 59.716 45.833 10.32 0.00 36.26 5.19
2948 3303 4.039973 TGTGCACTTACCATATACTAGGGC 59.960 45.833 19.41 0.00 35.84 5.19
2949 3304 5.801531 TGTGCACTTACCATATACTAGGG 57.198 43.478 19.41 0.00 35.32 3.53
2950 3305 6.650807 CCAATGTGCACTTACCATATACTAGG 59.349 42.308 19.41 0.00 0.00 3.02
2952 3307 7.368198 TCCAATGTGCACTTACCATATACTA 57.632 36.000 19.41 0.00 0.00 1.82
2953 3308 6.247229 TCCAATGTGCACTTACCATATACT 57.753 37.500 19.41 0.00 0.00 2.12
2954 3309 5.470098 CCTCCAATGTGCACTTACCATATAC 59.530 44.000 19.41 0.00 0.00 1.47
2955 3310 5.368230 TCCTCCAATGTGCACTTACCATATA 59.632 40.000 19.41 0.00 0.00 0.86
2956 3311 4.165950 TCCTCCAATGTGCACTTACCATAT 59.834 41.667 19.41 0.00 0.00 1.78
2960 3315 2.489938 TCCTCCAATGTGCACTTACC 57.510 50.000 19.41 0.00 0.00 2.85
2961 3316 4.009675 TGATTCCTCCAATGTGCACTTAC 58.990 43.478 19.41 0.00 0.00 2.34
2962 3317 4.009675 GTGATTCCTCCAATGTGCACTTA 58.990 43.478 19.41 0.00 0.00 2.24
2964 3319 2.224843 TGTGATTCCTCCAATGTGCACT 60.225 45.455 19.41 0.15 0.00 4.40
2965 3320 2.095059 GTGTGATTCCTCCAATGTGCAC 60.095 50.000 10.75 10.75 0.00 4.57
2966 3321 2.161855 GTGTGATTCCTCCAATGTGCA 58.838 47.619 0.00 0.00 0.00 4.57
2967 3322 1.131126 CGTGTGATTCCTCCAATGTGC 59.869 52.381 0.00 0.00 0.00 4.57
2968 3323 1.739466 CCGTGTGATTCCTCCAATGTG 59.261 52.381 0.00 0.00 0.00 3.21
2969 3324 1.628340 TCCGTGTGATTCCTCCAATGT 59.372 47.619 0.00 0.00 0.00 2.71
2970 3325 2.009774 GTCCGTGTGATTCCTCCAATG 58.990 52.381 0.00 0.00 0.00 2.82
2971 3326 1.909302 AGTCCGTGTGATTCCTCCAAT 59.091 47.619 0.00 0.00 0.00 3.16
2972 3327 1.001974 CAGTCCGTGTGATTCCTCCAA 59.998 52.381 0.00 0.00 0.00 3.53
2973 3328 0.608130 CAGTCCGTGTGATTCCTCCA 59.392 55.000 0.00 0.00 0.00 3.86
2974 3329 0.608640 ACAGTCCGTGTGATTCCTCC 59.391 55.000 0.00 0.00 38.28 4.30
2975 3330 2.492484 AGTACAGTCCGTGTGATTCCTC 59.508 50.000 0.00 0.00 40.69 3.71
2991 3346 6.367374 TCAAACATACTTCCCATGAGTACA 57.633 37.500 0.00 0.00 32.82 2.90
2992 3347 6.879458 AGTTCAAACATACTTCCCATGAGTAC 59.121 38.462 0.00 0.00 32.82 2.73
2999 3354 9.391006 GATAATACAGTTCAAACATACTTCCCA 57.609 33.333 0.00 0.00 0.00 4.37
3037 3392 7.047460 ACTCTCGTTTCAGGTTAAAGAACTA 57.953 36.000 0.00 0.00 35.74 2.24
3065 3423 6.183360 GCAACGACAGCTAAGATTTTGATAGT 60.183 38.462 0.00 0.00 0.00 2.12
3071 3429 5.376854 AATGCAACGACAGCTAAGATTTT 57.623 34.783 0.00 0.00 0.00 1.82
3074 3432 3.062639 CGAAATGCAACGACAGCTAAGAT 59.937 43.478 0.00 0.00 0.00 2.40
3083 3441 1.529438 TCTTGTCCGAAATGCAACGAC 59.471 47.619 11.69 4.48 0.00 4.34
3086 3444 7.016361 ACTATTATCTTGTCCGAAATGCAAC 57.984 36.000 0.00 0.00 0.00 4.17
3096 3454 9.956720 CATTGAAATCCAACTATTATCTTGTCC 57.043 33.333 0.00 0.00 37.63 4.02
3124 3483 7.046652 TGCTTTTGGTCATTCTTTTCAATCAA 58.953 30.769 0.00 0.00 0.00 2.57
3130 3489 7.597386 AGTAGATGCTTTTGGTCATTCTTTTC 58.403 34.615 0.00 0.00 0.00 2.29
3159 3519 5.585047 GTCCTTGCTTCGAATAATGTACCTT 59.415 40.000 0.00 0.00 0.00 3.50
3162 3522 5.006746 CCTGTCCTTGCTTCGAATAATGTAC 59.993 44.000 0.00 0.00 0.00 2.90
3308 3668 0.880278 TGAGCGAGCAGTCACCAAAC 60.880 55.000 0.00 0.00 0.00 2.93
3332 3692 1.374125 TGTTGGCTGGTCGTCATCG 60.374 57.895 0.00 0.00 38.55 3.84
3350 3710 3.072184 AGTCAAAGAGGTTGCATGAGAGT 59.928 43.478 0.00 0.00 37.13 3.24
3454 3818 2.764010 ACTAGTGTATGTTGGCATCCGA 59.236 45.455 0.00 0.00 36.58 4.55
3456 3820 4.513442 TCAACTAGTGTATGTTGGCATCC 58.487 43.478 0.00 0.00 42.48 3.51
3457 3821 6.683974 ATTCAACTAGTGTATGTTGGCATC 57.316 37.500 0.00 0.00 42.48 3.91
3458 3822 8.752005 ATAATTCAACTAGTGTATGTTGGCAT 57.248 30.769 0.00 0.00 42.48 4.40
3459 3823 8.574251 AATAATTCAACTAGTGTATGTTGGCA 57.426 30.769 0.00 0.00 42.48 4.92
3460 3824 9.503427 GAAATAATTCAACTAGTGTATGTTGGC 57.497 33.333 0.00 0.00 42.48 4.52
3489 3875 7.724506 AGATCGAGAAGTTATTACCACCATAGA 59.275 37.037 0.00 0.00 0.00 1.98
3493 3879 6.540438 AAGATCGAGAAGTTATTACCACCA 57.460 37.500 0.00 0.00 0.00 4.17
3494 3880 7.333672 ACAAAAGATCGAGAAGTTATTACCACC 59.666 37.037 0.00 0.00 0.00 4.61
3523 3912 5.717038 AAAACAAGTTGGAAATTGAAGCG 57.283 34.783 7.96 0.00 0.00 4.68
3525 3914 6.840075 TGCAAAAACAAGTTGGAAATTGAAG 58.160 32.000 7.96 0.00 0.00 3.02
3534 3923 2.929398 GTGTCCTGCAAAAACAAGTTGG 59.071 45.455 7.96 0.00 0.00 3.77
3571 3960 1.675641 GTGGCCACAGGAAAGCGAT 60.676 57.895 31.23 0.00 0.00 4.58
3710 4099 0.109319 GCATCCGCAAACATCCGTTT 60.109 50.000 0.00 0.00 46.38 3.60
3714 4103 2.008268 CTGGGCATCCGCAAACATCC 62.008 60.000 0.00 0.00 41.24 3.51
3725 4114 2.512515 GTCAGTCGGCTGGGCATC 60.513 66.667 18.55 0.00 42.78 3.91
3752 4141 1.308877 AATACCCCAGCCTGGAATGT 58.691 50.000 13.74 8.96 40.96 2.71
3755 4144 0.629058 GGAAATACCCCAGCCTGGAA 59.371 55.000 13.74 0.00 40.96 3.53
3757 4146 1.518367 TAGGAAATACCCCAGCCTGG 58.482 55.000 2.91 2.91 40.05 4.45
3769 4158 3.194116 CCAAGTGCACAGCATTAGGAAAT 59.806 43.478 21.04 0.00 41.91 2.17
3814 4203 5.188163 TGTTAGGCAGTGCACTTACCTATAA 59.812 40.000 31.81 22.86 34.17 0.98
3830 4219 7.903145 TCTATTCACTTAGAACTTGTTAGGCA 58.097 34.615 0.00 0.00 39.49 4.75
3831 4220 8.251721 TCTCTATTCACTTAGAACTTGTTAGGC 58.748 37.037 0.00 0.00 39.49 3.93
3901 4292 7.078228 GGATAGTTCAACAATTCAACAGTGAC 58.922 38.462 0.00 0.00 31.90 3.67
3905 4296 6.969366 TGTGGATAGTTCAACAATTCAACAG 58.031 36.000 0.00 0.00 32.67 3.16
3952 4343 1.209019 ACTCGCTCCATCTGCATTCTT 59.791 47.619 0.00 0.00 0.00 2.52
4027 4418 0.674895 GCTTGTTCCATCAGACGCCT 60.675 55.000 0.00 0.00 0.00 5.52
4268 4660 3.423154 GCCCGAACCGTTGCTGAG 61.423 66.667 0.00 0.00 0.00 3.35
4288 4680 1.289530 AGTCAGAACCCAAACCCCAAA 59.710 47.619 0.00 0.00 0.00 3.28
4291 4683 1.328279 CAAGTCAGAACCCAAACCCC 58.672 55.000 0.00 0.00 0.00 4.95
4318 4710 5.359194 ACCTTCAACGAGTATGGATTCAT 57.641 39.130 0.00 0.00 37.40 2.57
4406 6794 7.039223 TGGAGTAACTTAACCCTAGTTTCTGAG 60.039 40.741 0.00 0.00 34.63 3.35
4478 6866 7.019774 TCTCAATGTCAGTCAAAAGTTTCAG 57.980 36.000 0.00 0.00 0.00 3.02
4576 6964 1.601903 GTGCGGTTCTGTGATCACAAA 59.398 47.619 27.63 20.49 41.33 2.83
4593 6981 4.229876 GTGGAAACTTAATCAAGCAGTGC 58.770 43.478 7.13 7.13 34.94 4.40
4600 6988 6.058833 TGTACTGCTGTGGAAACTTAATCAA 58.941 36.000 6.48 0.00 0.00 2.57
4713 7104 0.523966 GTAGAGTGCTCTGCTCACGT 59.476 55.000 11.63 0.00 40.71 4.49
4714 7105 0.179150 GGTAGAGTGCTCTGCTCACG 60.179 60.000 14.99 0.00 41.26 4.35
4776 7177 5.930135 TCTGATTTTGGTAGAATAGAGGGC 58.070 41.667 0.00 0.00 0.00 5.19
4880 7281 1.272490 TCGGCTGTCAACAACTAGAGG 59.728 52.381 0.00 0.00 0.00 3.69
4962 7363 6.375455 AGAATGTCCTGTTTATGACCAACATC 59.625 38.462 0.00 0.00 40.07 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.