Multiple sequence alignment - TraesCS2B01G130800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G130800 chr2B 100.000 2306 0 0 1 2306 97952576 97950271 0.000000e+00 4259.0
1 TraesCS2B01G130800 chr2B 97.596 915 19 2 422 1333 790271129 790272043 0.000000e+00 1565.0
2 TraesCS2B01G130800 chr2B 97.590 913 20 1 422 1332 781200325 781199413 0.000000e+00 1563.0
3 TraesCS2B01G130800 chr2D 97.590 913 20 2 422 1332 60591029 60590117 0.000000e+00 1563.0
4 TraesCS2B01G130800 chr2D 96.436 477 14 2 1831 2306 62401420 62400946 0.000000e+00 784.0
5 TraesCS2B01G130800 chr2D 87.223 587 52 15 1592 2156 473089527 473090112 0.000000e+00 647.0
6 TraesCS2B01G130800 chr2D 85.167 209 19 5 1332 1540 473088597 473088793 1.080000e-48 204.0
7 TraesCS2B01G130800 chr2D 93.701 127 7 1 2181 2306 473090096 473090222 3.020000e-44 189.0
8 TraesCS2B01G130800 chr2D 100.000 34 0 0 234 267 62401511 62401478 1.910000e-06 63.9
9 TraesCS2B01G130800 chr3A 97.146 911 24 2 422 1330 652644810 652645720 0.000000e+00 1537.0
10 TraesCS2B01G130800 chr3A 94.286 105 3 2 135 236 600913797 600913901 8.530000e-35 158.0
11 TraesCS2B01G130800 chr7D 97.348 905 19 4 430 1332 77417275 77418176 0.000000e+00 1533.0
12 TraesCS2B01G130800 chr1B 96.831 915 26 2 422 1334 679360574 679359661 0.000000e+00 1526.0
13 TraesCS2B01G130800 chr1B 96.076 892 27 5 422 1311 596256685 596257570 0.000000e+00 1447.0
14 TraesCS2B01G130800 chr3B 96.718 914 27 2 422 1332 133436244 133437157 0.000000e+00 1519.0
15 TraesCS2B01G130800 chr3B 97.561 123 3 0 113 235 75980663 75980785 6.450000e-51 211.0
16 TraesCS2B01G130800 chr3B 93.056 72 5 0 24 95 75980534 75980605 3.130000e-19 106.0
17 TraesCS2B01G130800 chrUn 95.724 912 36 2 422 1331 11115513 11116423 0.000000e+00 1465.0
18 TraesCS2B01G130800 chr2A 97.276 771 15 4 1538 2306 63357712 63356946 0.000000e+00 1303.0
19 TraesCS2B01G130800 chr2A 97.608 209 5 0 1332 1540 63358724 63358516 2.180000e-95 359.0
20 TraesCS2B01G130800 chr2A 86.813 273 30 5 1886 2156 614574402 614574670 1.340000e-77 300.0
21 TraesCS2B01G130800 chr2A 94.059 101 5 1 234 333 63359269 63359169 3.970000e-33 152.0
22 TraesCS2B01G130800 chr6D 94.697 132 5 1 103 234 467538020 467538149 1.080000e-48 204.0
23 TraesCS2B01G130800 chr4B 93.636 110 5 1 113 222 424721165 424721272 1.830000e-36 163.0
24 TraesCS2B01G130800 chr7A 93.056 72 5 0 24 95 360083358 360083287 3.130000e-19 106.0
25 TraesCS2B01G130800 chr6A 93.333 45 2 1 1943 1987 609026027 609026070 5.320000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G130800 chr2B 97950271 97952576 2305 True 4259.000000 4259 100.000000 1 2306 1 chr2B.!!$R1 2305
1 TraesCS2B01G130800 chr2B 790271129 790272043 914 False 1565.000000 1565 97.596000 422 1333 1 chr2B.!!$F1 911
2 TraesCS2B01G130800 chr2B 781199413 781200325 912 True 1563.000000 1563 97.590000 422 1332 1 chr2B.!!$R2 910
3 TraesCS2B01G130800 chr2D 60590117 60591029 912 True 1563.000000 1563 97.590000 422 1332 1 chr2D.!!$R1 910
4 TraesCS2B01G130800 chr2D 62400946 62401511 565 True 423.950000 784 98.218000 234 2306 2 chr2D.!!$R2 2072
5 TraesCS2B01G130800 chr2D 473088597 473090222 1625 False 346.666667 647 88.697000 1332 2306 3 chr2D.!!$F1 974
6 TraesCS2B01G130800 chr3A 652644810 652645720 910 False 1537.000000 1537 97.146000 422 1330 1 chr3A.!!$F2 908
7 TraesCS2B01G130800 chr7D 77417275 77418176 901 False 1533.000000 1533 97.348000 430 1332 1 chr7D.!!$F1 902
8 TraesCS2B01G130800 chr1B 679359661 679360574 913 True 1526.000000 1526 96.831000 422 1334 1 chr1B.!!$R1 912
9 TraesCS2B01G130800 chr1B 596256685 596257570 885 False 1447.000000 1447 96.076000 422 1311 1 chr1B.!!$F1 889
10 TraesCS2B01G130800 chr3B 133436244 133437157 913 False 1519.000000 1519 96.718000 422 1332 1 chr3B.!!$F1 910
11 TraesCS2B01G130800 chrUn 11115513 11116423 910 False 1465.000000 1465 95.724000 422 1331 1 chrUn.!!$F1 909
12 TraesCS2B01G130800 chr2A 63356946 63359269 2323 True 604.666667 1303 96.314333 234 2306 3 chr2A.!!$R1 2072

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.107945 GTGCCCCTGTTTTTGTGCAA 60.108 50.0 0.0 0.0 0.0 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1477 3537 0.033504 GTCGAGGGCACTTCAGTTGA 59.966 55.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.473796 TTTAATTAGGTTAAGCGCTTCCG 57.526 39.130 28.82 0.00 33.99 4.30
25 26 2.973694 ATTAGGTTAAGCGCTTCCGA 57.026 45.000 28.82 16.22 36.29 4.55
26 27 2.973694 TTAGGTTAAGCGCTTCCGAT 57.026 45.000 28.82 14.11 36.29 4.18
27 28 4.595762 ATTAGGTTAAGCGCTTCCGATA 57.404 40.909 28.82 13.05 36.29 2.92
28 29 2.973694 AGGTTAAGCGCTTCCGATAA 57.026 45.000 28.82 12.44 36.29 1.75
29 30 3.255969 AGGTTAAGCGCTTCCGATAAA 57.744 42.857 28.82 11.62 36.29 1.40
30 31 3.805207 AGGTTAAGCGCTTCCGATAAAT 58.195 40.909 28.82 0.87 36.29 1.40
31 32 4.196971 AGGTTAAGCGCTTCCGATAAATT 58.803 39.130 28.82 0.00 36.29 1.82
32 33 4.035208 AGGTTAAGCGCTTCCGATAAATTG 59.965 41.667 28.82 0.00 36.29 2.32
33 34 4.201881 GGTTAAGCGCTTCCGATAAATTGT 60.202 41.667 28.82 0.00 36.29 2.71
34 35 3.405170 AAGCGCTTCCGATAAATTGTG 57.595 42.857 18.98 0.00 36.29 3.33
35 36 2.356135 AGCGCTTCCGATAAATTGTGT 58.644 42.857 2.64 0.00 36.29 3.72
36 37 2.747446 AGCGCTTCCGATAAATTGTGTT 59.253 40.909 2.64 0.00 36.29 3.32
37 38 3.936453 AGCGCTTCCGATAAATTGTGTTA 59.064 39.130 2.64 0.00 36.29 2.41
38 39 4.574828 AGCGCTTCCGATAAATTGTGTTAT 59.425 37.500 2.64 0.00 36.29 1.89
39 40 4.904154 GCGCTTCCGATAAATTGTGTTATC 59.096 41.667 0.00 0.00 37.20 1.75
40 41 5.277345 GCGCTTCCGATAAATTGTGTTATCT 60.277 40.000 0.00 0.00 38.03 1.98
41 42 6.715464 CGCTTCCGATAAATTGTGTTATCTT 58.285 36.000 4.06 0.00 38.03 2.40
42 43 6.846283 CGCTTCCGATAAATTGTGTTATCTTC 59.154 38.462 4.06 0.00 38.03 2.87
43 44 7.465379 CGCTTCCGATAAATTGTGTTATCTTCA 60.465 37.037 4.06 0.00 38.03 3.02
44 45 8.181573 GCTTCCGATAAATTGTGTTATCTTCAA 58.818 33.333 4.06 0.00 38.03 2.69
45 46 9.708222 CTTCCGATAAATTGTGTTATCTTCAAG 57.292 33.333 4.06 0.00 38.03 3.02
46 47 8.208718 TCCGATAAATTGTGTTATCTTCAAGG 57.791 34.615 4.06 0.00 38.03 3.61
47 48 8.044309 TCCGATAAATTGTGTTATCTTCAAGGA 58.956 33.333 4.06 0.93 38.03 3.36
48 49 8.338259 CCGATAAATTGTGTTATCTTCAAGGAG 58.662 37.037 4.06 0.00 38.03 3.69
49 50 9.098355 CGATAAATTGTGTTATCTTCAAGGAGA 57.902 33.333 4.06 0.00 38.03 3.71
67 68 9.174166 TCAAGGAGATTAAATAGTTTACTTGGC 57.826 33.333 0.00 0.00 34.13 4.52
68 69 9.178758 CAAGGAGATTAAATAGTTTACTTGGCT 57.821 33.333 0.00 0.00 0.00 4.75
107 108 9.656040 TTTCCGTATTACTTATAAAGTTGCAGA 57.344 29.630 0.00 0.00 42.81 4.26
108 109 8.638685 TCCGTATTACTTATAAAGTTGCAGAC 57.361 34.615 0.00 0.00 42.81 3.51
109 110 7.433131 TCCGTATTACTTATAAAGTTGCAGACG 59.567 37.037 0.00 3.00 42.81 4.18
110 111 7.055598 CGTATTACTTATAAAGTTGCAGACGC 58.944 38.462 0.00 0.00 42.81 5.19
111 112 7.043590 CGTATTACTTATAAAGTTGCAGACGCT 60.044 37.037 0.00 0.00 42.81 5.07
112 113 6.642683 TTACTTATAAAGTTGCAGACGCTC 57.357 37.500 0.00 0.00 42.81 5.03
113 114 4.566004 ACTTATAAAGTTGCAGACGCTCA 58.434 39.130 0.00 0.00 39.04 4.26
114 115 4.627467 ACTTATAAAGTTGCAGACGCTCAG 59.373 41.667 0.00 0.00 39.04 3.35
115 116 1.795768 TAAAGTTGCAGACGCTCAGG 58.204 50.000 0.00 0.00 39.64 3.86
116 117 0.886490 AAAGTTGCAGACGCTCAGGG 60.886 55.000 0.00 0.00 39.64 4.45
117 118 3.426568 GTTGCAGACGCTCAGGGC 61.427 66.667 0.00 0.00 39.64 5.19
118 119 3.630013 TTGCAGACGCTCAGGGCT 61.630 61.111 0.00 0.00 39.64 5.19
119 120 2.282783 TTGCAGACGCTCAGGGCTA 61.283 57.895 0.00 0.00 39.64 3.93
120 121 1.617018 TTGCAGACGCTCAGGGCTAT 61.617 55.000 0.00 0.00 39.64 2.97
121 122 1.300542 GCAGACGCTCAGGGCTATC 60.301 63.158 0.00 0.00 39.13 2.08
122 123 2.021068 GCAGACGCTCAGGGCTATCA 62.021 60.000 0.00 0.00 39.13 2.15
123 124 0.678395 CAGACGCTCAGGGCTATCAT 59.322 55.000 0.00 0.00 39.13 2.45
124 125 1.069823 CAGACGCTCAGGGCTATCATT 59.930 52.381 0.00 0.00 39.13 2.57
125 126 1.342819 AGACGCTCAGGGCTATCATTC 59.657 52.381 0.00 0.00 39.13 2.67
126 127 0.394565 ACGCTCAGGGCTATCATTCC 59.605 55.000 0.00 0.00 39.13 3.01
127 128 0.321122 CGCTCAGGGCTATCATTCCC 60.321 60.000 0.00 0.00 42.94 3.97
128 129 0.767375 GCTCAGGGCTATCATTCCCA 59.233 55.000 0.00 0.00 45.07 4.37
129 130 1.271271 GCTCAGGGCTATCATTCCCAG 60.271 57.143 0.00 0.00 45.07 4.45
130 131 0.767375 TCAGGGCTATCATTCCCAGC 59.233 55.000 0.00 0.00 45.07 4.85
131 132 0.769873 CAGGGCTATCATTCCCAGCT 59.230 55.000 0.00 0.00 45.07 4.24
132 133 1.144503 CAGGGCTATCATTCCCAGCTT 59.855 52.381 0.00 0.00 45.07 3.74
133 134 1.855599 AGGGCTATCATTCCCAGCTTT 59.144 47.619 0.00 0.00 45.07 3.51
134 135 3.056080 AGGGCTATCATTCCCAGCTTTA 58.944 45.455 0.00 0.00 45.07 1.85
135 136 3.659686 AGGGCTATCATTCCCAGCTTTAT 59.340 43.478 0.00 0.00 45.07 1.40
136 137 3.760684 GGGCTATCATTCCCAGCTTTATG 59.239 47.826 0.00 0.00 42.18 1.90
137 138 3.760684 GGCTATCATTCCCAGCTTTATGG 59.239 47.826 0.00 0.00 40.29 2.74
138 139 3.192212 GCTATCATTCCCAGCTTTATGGC 59.808 47.826 0.00 0.00 39.17 4.40
139 140 2.071778 TCATTCCCAGCTTTATGGCC 57.928 50.000 0.00 0.00 39.17 5.36
140 141 1.287442 TCATTCCCAGCTTTATGGCCA 59.713 47.619 8.56 8.56 39.17 5.36
141 142 2.109774 CATTCCCAGCTTTATGGCCAA 58.890 47.619 10.96 0.00 39.17 4.52
142 143 2.317371 TTCCCAGCTTTATGGCCAAA 57.683 45.000 10.96 0.00 39.17 3.28
143 144 2.548464 TCCCAGCTTTATGGCCAAAT 57.452 45.000 10.96 0.00 39.17 2.32
144 145 2.109774 TCCCAGCTTTATGGCCAAATG 58.890 47.619 10.96 9.14 39.17 2.32
145 146 1.139455 CCCAGCTTTATGGCCAAATGG 59.861 52.381 10.96 11.67 39.17 3.16
146 147 1.832998 CCAGCTTTATGGCCAAATGGT 59.167 47.619 10.96 10.55 37.57 3.55
147 148 2.419021 CCAGCTTTATGGCCAAATGGTG 60.419 50.000 23.46 23.46 37.57 4.17
148 149 1.207811 AGCTTTATGGCCAAATGGTGC 59.792 47.619 10.96 10.13 37.57 5.01
153 154 3.393106 GGCCAAATGGTGCCCCTG 61.393 66.667 0.00 0.00 41.97 4.45
154 155 2.604382 GCCAAATGGTGCCCCTGT 60.604 61.111 0.71 0.00 37.57 4.00
155 156 2.216331 GCCAAATGGTGCCCCTGTT 61.216 57.895 0.71 0.00 37.57 3.16
156 157 1.767654 GCCAAATGGTGCCCCTGTTT 61.768 55.000 0.71 0.00 37.57 2.83
157 158 0.764271 CCAAATGGTGCCCCTGTTTT 59.236 50.000 0.00 0.00 0.00 2.43
158 159 1.142667 CCAAATGGTGCCCCTGTTTTT 59.857 47.619 0.00 0.00 0.00 1.94
159 160 2.220313 CAAATGGTGCCCCTGTTTTTG 58.780 47.619 0.00 0.00 0.00 2.44
160 161 1.506025 AATGGTGCCCCTGTTTTTGT 58.494 45.000 0.00 0.00 0.00 2.83
161 162 0.758123 ATGGTGCCCCTGTTTTTGTG 59.242 50.000 0.00 0.00 0.00 3.33
162 163 1.227527 GGTGCCCCTGTTTTTGTGC 60.228 57.895 0.00 0.00 0.00 4.57
163 164 1.519719 GTGCCCCTGTTTTTGTGCA 59.480 52.632 0.00 0.00 0.00 4.57
164 165 0.107945 GTGCCCCTGTTTTTGTGCAA 60.108 50.000 0.00 0.00 0.00 4.08
165 166 0.615331 TGCCCCTGTTTTTGTGCAAA 59.385 45.000 0.00 0.00 0.00 3.68
166 167 1.003580 TGCCCCTGTTTTTGTGCAAAA 59.996 42.857 6.04 6.04 38.40 2.44
176 177 2.880963 TTGTGCAAAACTTGGTAGCC 57.119 45.000 0.00 0.00 0.00 3.93
177 178 1.769026 TGTGCAAAACTTGGTAGCCA 58.231 45.000 0.00 0.00 0.00 4.75
178 179 1.680735 TGTGCAAAACTTGGTAGCCAG 59.319 47.619 0.00 0.00 33.81 4.85
179 180 0.673437 TGCAAAACTTGGTAGCCAGC 59.327 50.000 0.00 0.00 33.81 4.85
180 181 0.387239 GCAAAACTTGGTAGCCAGCG 60.387 55.000 0.00 0.00 33.81 5.18
181 182 1.234821 CAAAACTTGGTAGCCAGCGA 58.765 50.000 0.00 0.00 33.81 4.93
182 183 1.812571 CAAAACTTGGTAGCCAGCGAT 59.187 47.619 0.00 0.00 33.81 4.58
183 184 1.453155 AAACTTGGTAGCCAGCGATG 58.547 50.000 0.00 0.00 33.81 3.84
184 185 1.026718 AACTTGGTAGCCAGCGATGC 61.027 55.000 0.00 0.00 33.81 3.91
185 186 1.153289 CTTGGTAGCCAGCGATGCT 60.153 57.895 0.00 0.00 42.81 3.79
194 195 2.818714 AGCGATGCTGCTGTGCTC 60.819 61.111 0.00 0.00 45.28 4.26
195 196 2.818714 GCGATGCTGCTGTGCTCT 60.819 61.111 0.00 0.00 0.00 4.09
196 197 2.396955 GCGATGCTGCTGTGCTCTT 61.397 57.895 0.00 0.00 0.00 2.85
197 198 1.919956 GCGATGCTGCTGTGCTCTTT 61.920 55.000 0.00 0.00 0.00 2.52
198 199 0.179197 CGATGCTGCTGTGCTCTTTG 60.179 55.000 0.00 0.00 0.00 2.77
199 200 0.170561 GATGCTGCTGTGCTCTTTGG 59.829 55.000 0.00 0.00 0.00 3.28
200 201 0.538977 ATGCTGCTGTGCTCTTTGGT 60.539 50.000 0.00 0.00 0.00 3.67
201 202 0.752743 TGCTGCTGTGCTCTTTGGTT 60.753 50.000 0.00 0.00 0.00 3.67
202 203 1.238439 GCTGCTGTGCTCTTTGGTTA 58.762 50.000 0.00 0.00 0.00 2.85
203 204 1.608590 GCTGCTGTGCTCTTTGGTTAA 59.391 47.619 0.00 0.00 0.00 2.01
204 205 2.229784 GCTGCTGTGCTCTTTGGTTAAT 59.770 45.455 0.00 0.00 0.00 1.40
205 206 3.829948 CTGCTGTGCTCTTTGGTTAATG 58.170 45.455 0.00 0.00 0.00 1.90
206 207 2.557924 TGCTGTGCTCTTTGGTTAATGG 59.442 45.455 0.00 0.00 0.00 3.16
207 208 2.819608 GCTGTGCTCTTTGGTTAATGGA 59.180 45.455 0.00 0.00 0.00 3.41
208 209 3.255642 GCTGTGCTCTTTGGTTAATGGAA 59.744 43.478 0.00 0.00 0.00 3.53
209 210 4.082026 GCTGTGCTCTTTGGTTAATGGAAT 60.082 41.667 0.00 0.00 0.00 3.01
210 211 5.125417 GCTGTGCTCTTTGGTTAATGGAATA 59.875 40.000 0.00 0.00 0.00 1.75
211 212 6.350110 GCTGTGCTCTTTGGTTAATGGAATAA 60.350 38.462 0.00 0.00 0.00 1.40
212 213 7.531857 TGTGCTCTTTGGTTAATGGAATAAA 57.468 32.000 0.00 0.00 0.00 1.40
213 214 8.133024 TGTGCTCTTTGGTTAATGGAATAAAT 57.867 30.769 0.00 0.00 0.00 1.40
214 215 9.249053 TGTGCTCTTTGGTTAATGGAATAAATA 57.751 29.630 0.00 0.00 0.00 1.40
294 295 2.129555 AACTGCATGGGGAGCGAAGT 62.130 55.000 0.00 0.00 35.59 3.01
300 301 1.557269 ATGGGGAGCGAAGTCTGCTT 61.557 55.000 0.00 0.00 44.18 3.91
316 317 4.137872 TTACCTCGGCCCGCTTCG 62.138 66.667 0.00 0.00 0.00 3.79
343 385 3.155167 GAGACGGCGGAGGGGATT 61.155 66.667 13.24 0.00 0.00 3.01
356 427 2.418976 GAGGGGATTTTTCGAGTTTCGG 59.581 50.000 0.00 0.00 40.88 4.30
360 431 3.234386 GGATTTTTCGAGTTTCGGCTTG 58.766 45.455 0.00 0.00 40.88 4.01
361 432 2.113910 TTTTTCGAGTTTCGGCTTGC 57.886 45.000 0.00 0.00 40.88 4.01
371 442 4.809496 CGGCTTGCCTGCTCCCAT 62.809 66.667 10.12 0.00 0.00 4.00
373 444 2.274760 GCTTGCCTGCTCCCATCT 59.725 61.111 0.00 0.00 0.00 2.90
375 446 1.913722 CTTGCCTGCTCCCATCTCT 59.086 57.895 0.00 0.00 0.00 3.10
377 448 1.487976 CTTGCCTGCTCCCATCTCTTA 59.512 52.381 0.00 0.00 0.00 2.10
381 452 2.484594 GCCTGCTCCCATCTCTTACTTC 60.485 54.545 0.00 0.00 0.00 3.01
382 453 2.768527 CCTGCTCCCATCTCTTACTTCA 59.231 50.000 0.00 0.00 0.00 3.02
383 454 3.390639 CCTGCTCCCATCTCTTACTTCAT 59.609 47.826 0.00 0.00 0.00 2.57
386 457 3.645687 GCTCCCATCTCTTACTTCATCCT 59.354 47.826 0.00 0.00 0.00 3.24
387 458 4.835615 GCTCCCATCTCTTACTTCATCCTA 59.164 45.833 0.00 0.00 0.00 2.94
389 460 4.827835 TCCCATCTCTTACTTCATCCTACG 59.172 45.833 0.00 0.00 0.00 3.51
391 462 4.827835 CCATCTCTTACTTCATCCTACGGA 59.172 45.833 0.00 0.00 35.55 4.69
393 464 4.462133 TCTCTTACTTCATCCTACGGAGG 58.538 47.826 7.64 7.64 45.35 4.30
395 466 4.607239 TCTTACTTCATCCTACGGAGGTT 58.393 43.478 15.01 1.37 44.19 3.50
396 467 5.759059 TCTTACTTCATCCTACGGAGGTTA 58.241 41.667 15.01 0.00 44.19 2.85
397 468 6.189859 TCTTACTTCATCCTACGGAGGTTAA 58.810 40.000 15.01 5.78 44.19 2.01
398 469 6.320672 TCTTACTTCATCCTACGGAGGTTAAG 59.679 42.308 15.01 17.00 44.19 1.85
399 470 4.351127 ACTTCATCCTACGGAGGTTAAGT 58.649 43.478 15.01 17.62 44.19 2.24
400 471 4.159879 ACTTCATCCTACGGAGGTTAAGTG 59.840 45.833 22.11 12.38 44.19 3.16
401 472 3.972133 TCATCCTACGGAGGTTAAGTGA 58.028 45.455 15.01 8.76 44.19 3.41
402 473 3.952323 TCATCCTACGGAGGTTAAGTGAG 59.048 47.826 15.01 0.00 44.19 3.51
403 474 2.097825 TCCTACGGAGGTTAAGTGAGC 58.902 52.381 15.01 0.00 44.19 4.26
404 475 1.822990 CCTACGGAGGTTAAGTGAGCA 59.177 52.381 5.14 0.00 38.16 4.26
405 476 2.416972 CCTACGGAGGTTAAGTGAGCAC 60.417 54.545 5.14 0.00 38.16 4.40
406 477 1.045407 ACGGAGGTTAAGTGAGCACA 58.955 50.000 3.19 0.00 0.00 4.57
407 478 1.414919 ACGGAGGTTAAGTGAGCACAA 59.585 47.619 3.19 0.00 0.00 3.33
408 479 1.798813 CGGAGGTTAAGTGAGCACAAC 59.201 52.381 3.19 0.00 0.00 3.32
409 480 2.805295 CGGAGGTTAAGTGAGCACAACA 60.805 50.000 3.19 0.00 0.00 3.33
410 481 2.808543 GGAGGTTAAGTGAGCACAACAG 59.191 50.000 3.19 0.00 0.00 3.16
411 482 3.494398 GGAGGTTAAGTGAGCACAACAGA 60.494 47.826 3.19 0.00 0.00 3.41
412 483 3.733337 AGGTTAAGTGAGCACAACAGAG 58.267 45.455 3.19 0.00 0.00 3.35
414 485 3.877508 GGTTAAGTGAGCACAACAGAGTT 59.122 43.478 3.19 0.00 0.00 3.01
415 486 4.260784 GGTTAAGTGAGCACAACAGAGTTG 60.261 45.833 8.24 8.24 0.00 3.16
416 487 1.303309 AGTGAGCACAACAGAGTTGC 58.697 50.000 9.60 0.00 0.00 4.17
417 488 0.308993 GTGAGCACAACAGAGTTGCC 59.691 55.000 9.60 2.12 0.00 4.52
418 489 0.819259 TGAGCACAACAGAGTTGCCC 60.819 55.000 9.60 1.80 0.00 5.36
419 490 0.819259 GAGCACAACAGAGTTGCCCA 60.819 55.000 9.60 0.00 0.00 5.36
420 491 0.395586 AGCACAACAGAGTTGCCCAA 60.396 50.000 9.60 0.00 0.00 4.12
532 603 5.923114 CGGATGTATCTTCGATCAAGTCAAT 59.077 40.000 0.00 0.00 33.27 2.57
898 970 1.066143 AGTTGGAGGAACTGGTATGCG 60.066 52.381 0.00 0.00 43.71 4.73
1046 1120 8.070171 CAGTCTACCAATTTATATTGAAAGCGG 58.930 37.037 7.40 0.00 43.12 5.52
1227 3287 0.179070 GGAGGACTCAAGGCCGAATC 60.179 60.000 0.00 0.00 0.00 2.52
1387 3447 0.819259 GCCACAACAAGCCAGACTCA 60.819 55.000 0.00 0.00 0.00 3.41
1413 3473 0.106918 ACCCGAACAAGCCAAACTCA 60.107 50.000 0.00 0.00 0.00 3.41
1433 3493 1.473258 ACACAAAGTGCAAGCTCCAA 58.527 45.000 0.00 0.00 36.98 3.53
1436 3496 0.746063 CAAAGTGCAAGCTCCAACCA 59.254 50.000 0.00 0.00 0.00 3.67
1442 3502 1.820519 TGCAAGCTCCAACCATCAATC 59.179 47.619 0.00 0.00 0.00 2.67
1453 3513 4.158949 CCAACCATCAATCTTGCTCATCAA 59.841 41.667 0.00 0.00 0.00 2.57
1454 3514 5.163447 CCAACCATCAATCTTGCTCATCAAT 60.163 40.000 0.00 0.00 33.57 2.57
1471 3531 3.135994 TCAATGTCATCGCCATCATCAG 58.864 45.455 0.00 0.00 0.00 2.90
1479 3539 2.996444 GCCATCATCAGCGTCATCA 58.004 52.632 0.00 0.00 0.00 3.07
1480 3540 1.302366 GCCATCATCAGCGTCATCAA 58.698 50.000 0.00 0.00 0.00 2.57
1481 3541 1.003116 GCCATCATCAGCGTCATCAAC 60.003 52.381 0.00 0.00 0.00 3.18
1482 3542 2.558378 CCATCATCAGCGTCATCAACT 58.442 47.619 0.00 0.00 0.00 3.16
1483 3543 2.287103 CCATCATCAGCGTCATCAACTG 59.713 50.000 0.00 0.00 0.00 3.16
1487 3547 2.820059 TCAGCGTCATCAACTGAAGT 57.180 45.000 0.00 0.00 37.49 3.01
1488 3548 2.407090 TCAGCGTCATCAACTGAAGTG 58.593 47.619 0.00 0.00 37.49 3.16
1498 3558 0.759346 AACTGAAGTGCCCTCGACTT 59.241 50.000 0.00 0.00 36.33 3.01
1499 3559 0.034059 ACTGAAGTGCCCTCGACTTG 59.966 55.000 0.00 0.00 33.71 3.16
1500 3560 0.034059 CTGAAGTGCCCTCGACTTGT 59.966 55.000 0.00 0.00 33.71 3.16
1504 3564 1.733399 GTGCCCTCGACTTGTCGAC 60.733 63.158 19.99 9.11 37.20 4.20
1508 3568 0.169230 CCCTCGACTTGTCGACTCTG 59.831 60.000 19.99 11.36 37.20 3.35
1528 3588 1.133976 GGCTCCACATCTTAGCACCAT 60.134 52.381 0.00 0.00 38.01 3.55
1540 3600 1.094785 AGCACCATCGGCATGTAAAC 58.905 50.000 0.00 0.00 0.00 2.01
1542 3602 1.202177 GCACCATCGGCATGTAAACAG 60.202 52.381 0.00 0.00 0.00 3.16
1544 3604 2.352651 CACCATCGGCATGTAAACAGAG 59.647 50.000 0.00 0.00 0.00 3.35
1545 3605 1.942657 CCATCGGCATGTAAACAGAGG 59.057 52.381 0.00 0.00 0.00 3.69
1546 3606 1.942657 CATCGGCATGTAAACAGAGGG 59.057 52.381 0.00 0.00 0.00 4.30
1547 3607 1.271856 TCGGCATGTAAACAGAGGGA 58.728 50.000 0.00 0.00 0.00 4.20
1550 3610 2.167693 CGGCATGTAAACAGAGGGAGTA 59.832 50.000 0.00 0.00 0.00 2.59
1551 3611 3.181465 CGGCATGTAAACAGAGGGAGTAT 60.181 47.826 0.00 0.00 0.00 2.12
1552 3612 4.038763 CGGCATGTAAACAGAGGGAGTATA 59.961 45.833 0.00 0.00 0.00 1.47
1553 3613 5.279506 CGGCATGTAAACAGAGGGAGTATAT 60.280 44.000 0.00 0.00 0.00 0.86
1554 3614 6.071560 CGGCATGTAAACAGAGGGAGTATATA 60.072 42.308 0.00 0.00 0.00 0.86
1556 3616 7.038941 GGCATGTAAACAGAGGGAGTATATACT 60.039 40.741 15.37 15.37 39.71 2.12
1583 4304 7.664318 ACTGTTTCTTGAATAAACGGGATACTT 59.336 33.333 16.21 0.00 44.12 2.24
1586 4307 8.508875 GTTTCTTGAATAAACGGGATACTTGAA 58.491 33.333 0.00 0.00 0.00 2.69
1590 4311 9.855021 CTTGAATAAACGGGATACTTGAATTTT 57.145 29.630 0.00 0.00 0.00 1.82
1634 4377 6.123651 TGTAGCAACTTTCCCTTTTGTTAGA 58.876 36.000 0.00 0.00 0.00 2.10
1650 4393 4.557205 TGTTAGAGTTTTCCTTCTCTCGC 58.443 43.478 0.00 0.00 40.78 5.03
1661 4404 2.594321 CTTCTCTCGCTGACTTCACTG 58.406 52.381 0.00 0.00 0.00 3.66
1664 4407 1.268079 CTCTCGCTGACTTCACTGTCA 59.732 52.381 0.00 0.00 43.72 3.58
1670 4413 2.159234 GCTGACTTCACTGTCATTGAGC 59.841 50.000 0.00 0.00 44.66 4.26
1672 4415 1.127582 GACTTCACTGTCATTGAGCGC 59.872 52.381 0.00 0.00 36.97 5.92
1687 4430 1.192146 AGCGCTGACCCCTCACTTTA 61.192 55.000 10.39 0.00 0.00 1.85
1692 4435 0.539986 TGACCCCTCACTTTATCGCC 59.460 55.000 0.00 0.00 0.00 5.54
1699 4442 1.757118 CTCACTTTATCGCCTCTCCCA 59.243 52.381 0.00 0.00 0.00 4.37
1702 4445 1.482593 ACTTTATCGCCTCTCCCACTG 59.517 52.381 0.00 0.00 0.00 3.66
1710 4453 0.539051 CCTCTCCCACTGCGATTCTT 59.461 55.000 0.00 0.00 0.00 2.52
1714 4457 2.427453 TCTCCCACTGCGATTCTTACTC 59.573 50.000 0.00 0.00 0.00 2.59
1717 4460 1.560923 CACTGCGATTCTTACTCGGG 58.439 55.000 0.00 0.00 36.65 5.14
1720 4463 1.337071 CTGCGATTCTTACTCGGGCTA 59.663 52.381 0.00 0.00 36.65 3.93
1734 4477 1.395608 CGGGCTAACACCACATAAACG 59.604 52.381 0.00 0.00 0.00 3.60
1748 4491 3.319405 ACATAAACGCACCATTTGGAACA 59.681 39.130 3.01 0.00 38.94 3.18
1761 4504 7.331687 CACCATTTGGAACATAGGAATCAAAAC 59.668 37.037 3.01 0.00 39.30 2.43
1762 4505 6.531240 CCATTTGGAACATAGGAATCAAAACG 59.469 38.462 0.00 0.00 39.30 3.60
1763 4506 4.695217 TGGAACATAGGAATCAAAACGC 57.305 40.909 0.00 0.00 0.00 4.84
1764 4507 3.442273 TGGAACATAGGAATCAAAACGCC 59.558 43.478 0.00 0.00 0.00 5.68
1776 4520 4.832590 TCAAAACGCCGGAATAGAAAAA 57.167 36.364 5.05 0.00 0.00 1.94
1825 4569 7.775053 ACCTAAATTCTTACAGCAATCCAAA 57.225 32.000 0.00 0.00 0.00 3.28
1834 4578 4.734398 ACAGCAATCCAAAACACAAGAA 57.266 36.364 0.00 0.00 0.00 2.52
1836 4580 6.403866 ACAGCAATCCAAAACACAAGAATA 57.596 33.333 0.00 0.00 0.00 1.75
1838 4582 6.183360 ACAGCAATCCAAAACACAAGAATACA 60.183 34.615 0.00 0.00 0.00 2.29
1839 4583 6.144402 CAGCAATCCAAAACACAAGAATACAC 59.856 38.462 0.00 0.00 0.00 2.90
1840 4584 5.405269 GCAATCCAAAACACAAGAATACACC 59.595 40.000 0.00 0.00 0.00 4.16
1856 4620 3.788227 ACACCAGACTTGCTATTTGGA 57.212 42.857 0.00 0.00 33.19 3.53
1862 4626 3.189287 CAGACTTGCTATTTGGACACCAC 59.811 47.826 0.00 0.00 30.78 4.16
1888 4652 9.046296 CATAAGAAAAACGCAGTAATCCTAGAT 57.954 33.333 0.00 0.00 45.00 1.98
1910 4674 7.271511 AGATACATGAGAGAAAACATGAGGTC 58.728 38.462 12.90 8.00 44.28 3.85
1914 4678 6.429385 ACATGAGAGAAAACATGAGGTCTTTC 59.571 38.462 12.90 4.04 44.28 2.62
1939 4703 3.147629 CCAAAATTCCTTTGCATTGCCA 58.852 40.909 6.12 0.00 42.74 4.92
1987 4751 1.819288 TCCTTTGTTTCAAACGGCACA 59.181 42.857 0.00 0.00 0.00 4.57
1991 4755 1.454201 TGTTTCAAACGGCACAGTCA 58.546 45.000 0.00 0.00 0.00 3.41
1995 4759 2.031258 TCAAACGGCACAGTCAGAAA 57.969 45.000 0.00 0.00 0.00 2.52
1997 4761 2.750166 TCAAACGGCACAGTCAGAAAAA 59.250 40.909 0.00 0.00 0.00 1.94
2032 4796 6.867550 GGAATTCGATTCTCCAAAATTCCTT 58.132 36.000 14.78 0.00 46.13 3.36
2034 4798 7.276438 GGAATTCGATTCTCCAAAATTCCTTTG 59.724 37.037 14.78 0.00 46.13 2.77
2037 4801 8.574251 TTCGATTCTCCAAAATTCCTTTGATA 57.426 30.769 0.00 0.00 46.35 2.15
2042 4806 7.333528 TCTCCAAAATTCCTTTGATATTCCG 57.666 36.000 0.00 0.00 46.35 4.30
2044 4808 5.049828 CCAAAATTCCTTTGATATTCCGCC 58.950 41.667 0.00 0.00 46.35 6.13
2065 4829 2.198406 GTTTCAACTTTCAAACGGGGC 58.802 47.619 0.00 0.00 0.00 5.80
2066 4830 0.747852 TTCAACTTTCAAACGGGGCC 59.252 50.000 0.00 0.00 0.00 5.80
2077 4841 3.702048 CGGGGCCTGAGAACGGAA 61.702 66.667 6.48 0.00 0.00 4.30
2083 4847 1.594331 GCCTGAGAACGGAAACAAGT 58.406 50.000 0.00 0.00 0.00 3.16
2085 4849 2.833794 CCTGAGAACGGAAACAAGTCA 58.166 47.619 0.00 0.00 0.00 3.41
2086 4850 3.403038 CCTGAGAACGGAAACAAGTCAT 58.597 45.455 0.00 0.00 0.00 3.06
2209 4973 2.678336 CAAAGAGGTATTCAGGGCGTTC 59.322 50.000 0.00 0.00 0.00 3.95
2210 4974 1.568504 AGAGGTATTCAGGGCGTTCA 58.431 50.000 0.00 0.00 0.00 3.18
2262 5027 3.293379 AGGGCCCCACCTAGTCCT 61.293 66.667 21.43 0.00 39.65 3.85
2273 5038 2.499289 CACCTAGTCCTGATCAGCAACT 59.501 50.000 24.06 24.06 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.149142 TCGGAAGCGCTTAACCTAATTAAAAA 59.851 34.615 25.11 0.00 32.26 1.94
1 2 5.642919 TCGGAAGCGCTTAACCTAATTAAAA 59.357 36.000 25.11 0.00 32.26 1.52
2 3 5.177326 TCGGAAGCGCTTAACCTAATTAAA 58.823 37.500 25.11 0.00 32.26 1.52
3 4 4.757594 TCGGAAGCGCTTAACCTAATTAA 58.242 39.130 25.11 0.00 0.00 1.40
4 5 4.389890 TCGGAAGCGCTTAACCTAATTA 57.610 40.909 25.11 1.63 0.00 1.40
5 6 3.255969 TCGGAAGCGCTTAACCTAATT 57.744 42.857 25.11 0.00 0.00 1.40
6 7 2.973694 TCGGAAGCGCTTAACCTAAT 57.026 45.000 25.11 0.00 0.00 1.73
7 8 2.973694 ATCGGAAGCGCTTAACCTAA 57.026 45.000 25.11 11.91 0.00 2.69
8 9 4.389890 TTTATCGGAAGCGCTTAACCTA 57.610 40.909 25.11 13.57 0.00 3.08
9 10 2.973694 TTATCGGAAGCGCTTAACCT 57.026 45.000 25.11 11.11 0.00 3.50
10 11 4.201881 ACAATTTATCGGAAGCGCTTAACC 60.202 41.667 25.11 19.87 0.00 2.85
11 12 4.728608 CACAATTTATCGGAAGCGCTTAAC 59.271 41.667 25.11 17.93 0.00 2.01
12 13 4.393680 ACACAATTTATCGGAAGCGCTTAA 59.606 37.500 25.11 13.15 0.00 1.85
13 14 3.936453 ACACAATTTATCGGAAGCGCTTA 59.064 39.130 25.11 8.33 0.00 3.09
14 15 2.747446 ACACAATTTATCGGAAGCGCTT 59.253 40.909 25.35 25.35 0.00 4.68
15 16 2.356135 ACACAATTTATCGGAAGCGCT 58.644 42.857 2.64 2.64 0.00 5.92
16 17 2.825086 ACACAATTTATCGGAAGCGC 57.175 45.000 0.00 0.00 0.00 5.92
17 18 6.287107 AGATAACACAATTTATCGGAAGCG 57.713 37.500 0.00 0.00 41.53 4.68
18 19 7.693952 TGAAGATAACACAATTTATCGGAAGC 58.306 34.615 0.00 0.00 41.53 3.86
19 20 9.708222 CTTGAAGATAACACAATTTATCGGAAG 57.292 33.333 0.00 0.00 41.53 3.46
20 21 8.673711 CCTTGAAGATAACACAATTTATCGGAA 58.326 33.333 0.00 0.00 41.53 4.30
21 22 8.044309 TCCTTGAAGATAACACAATTTATCGGA 58.956 33.333 0.00 0.00 41.53 4.55
22 23 8.208718 TCCTTGAAGATAACACAATTTATCGG 57.791 34.615 0.00 0.00 41.53 4.18
23 24 9.098355 TCTCCTTGAAGATAACACAATTTATCG 57.902 33.333 0.00 0.00 41.53 2.92
41 42 9.174166 GCCAAGTAAACTATTTAATCTCCTTGA 57.826 33.333 0.00 0.00 31.31 3.02
42 43 9.178758 AGCCAAGTAAACTATTTAATCTCCTTG 57.821 33.333 0.00 0.00 30.36 3.61
81 82 9.656040 TCTGCAACTTTATAAGTAATACGGAAA 57.344 29.630 0.00 0.00 41.91 3.13
82 83 9.090692 GTCTGCAACTTTATAAGTAATACGGAA 57.909 33.333 0.00 0.00 41.91 4.30
83 84 7.433131 CGTCTGCAACTTTATAAGTAATACGGA 59.567 37.037 0.00 0.00 41.91 4.69
84 85 7.553034 CGTCTGCAACTTTATAAGTAATACGG 58.447 38.462 0.00 0.00 41.91 4.02
85 86 7.043590 AGCGTCTGCAACTTTATAAGTAATACG 60.044 37.037 0.00 0.00 46.23 3.06
86 87 8.128016 AGCGTCTGCAACTTTATAAGTAATAC 57.872 34.615 0.00 0.00 46.23 1.89
87 88 7.977293 TGAGCGTCTGCAACTTTATAAGTAATA 59.023 33.333 0.00 0.00 46.23 0.98
88 89 6.816640 TGAGCGTCTGCAACTTTATAAGTAAT 59.183 34.615 0.00 0.00 46.23 1.89
89 90 6.160684 TGAGCGTCTGCAACTTTATAAGTAA 58.839 36.000 0.00 0.00 46.23 2.24
90 91 5.716094 TGAGCGTCTGCAACTTTATAAGTA 58.284 37.500 0.00 0.00 46.23 2.24
91 92 4.566004 TGAGCGTCTGCAACTTTATAAGT 58.434 39.130 0.00 0.00 46.23 2.24
92 93 4.033358 CCTGAGCGTCTGCAACTTTATAAG 59.967 45.833 0.00 0.00 46.23 1.73
93 94 3.932710 CCTGAGCGTCTGCAACTTTATAA 59.067 43.478 0.00 0.00 46.23 0.98
94 95 3.521560 CCTGAGCGTCTGCAACTTTATA 58.478 45.455 0.00 0.00 46.23 0.98
95 96 2.350522 CCTGAGCGTCTGCAACTTTAT 58.649 47.619 0.00 0.00 46.23 1.40
96 97 1.608025 CCCTGAGCGTCTGCAACTTTA 60.608 52.381 0.00 0.00 46.23 1.85
97 98 0.886490 CCCTGAGCGTCTGCAACTTT 60.886 55.000 0.00 0.00 46.23 2.66
98 99 1.302033 CCCTGAGCGTCTGCAACTT 60.302 57.895 0.00 0.00 46.23 2.66
99 100 2.345244 CCCTGAGCGTCTGCAACT 59.655 61.111 0.00 0.00 46.23 3.16
100 101 3.426568 GCCCTGAGCGTCTGCAAC 61.427 66.667 0.00 0.00 46.23 4.17
109 110 0.767375 TGGGAATGATAGCCCTGAGC 59.233 55.000 0.00 0.00 44.96 4.26
110 111 1.271271 GCTGGGAATGATAGCCCTGAG 60.271 57.143 12.35 1.78 44.96 3.35
111 112 0.767375 GCTGGGAATGATAGCCCTGA 59.233 55.000 12.35 0.00 44.96 3.86
112 113 0.769873 AGCTGGGAATGATAGCCCTG 59.230 55.000 0.00 0.00 44.96 4.45
113 114 1.527457 AAGCTGGGAATGATAGCCCT 58.473 50.000 0.00 0.00 44.96 5.19
114 115 2.371658 AAAGCTGGGAATGATAGCCC 57.628 50.000 0.00 0.00 44.93 5.19
115 116 3.760684 CCATAAAGCTGGGAATGATAGCC 59.239 47.826 0.00 0.00 38.18 3.93
116 117 3.192212 GCCATAAAGCTGGGAATGATAGC 59.808 47.826 0.00 0.00 36.75 2.97
117 118 3.760684 GGCCATAAAGCTGGGAATGATAG 59.239 47.826 0.00 0.00 36.75 2.08
118 119 3.139957 TGGCCATAAAGCTGGGAATGATA 59.860 43.478 0.00 0.00 36.75 2.15
119 120 2.091166 TGGCCATAAAGCTGGGAATGAT 60.091 45.455 0.00 0.00 36.75 2.45
120 121 1.287442 TGGCCATAAAGCTGGGAATGA 59.713 47.619 0.00 0.00 36.75 2.57
121 122 1.779221 TGGCCATAAAGCTGGGAATG 58.221 50.000 0.00 0.00 36.75 2.67
122 123 2.548464 TTGGCCATAAAGCTGGGAAT 57.452 45.000 6.09 0.00 36.75 3.01
123 124 2.317371 TTTGGCCATAAAGCTGGGAA 57.683 45.000 6.09 0.00 36.75 3.97
124 125 2.109774 CATTTGGCCATAAAGCTGGGA 58.890 47.619 6.09 0.00 36.75 4.37
125 126 1.139455 CCATTTGGCCATAAAGCTGGG 59.861 52.381 6.09 0.00 36.75 4.45
126 127 1.832998 ACCATTTGGCCATAAAGCTGG 59.167 47.619 6.09 9.25 39.32 4.85
127 128 2.896168 CACCATTTGGCCATAAAGCTG 58.104 47.619 6.09 0.00 39.32 4.24
128 129 1.207811 GCACCATTTGGCCATAAAGCT 59.792 47.619 6.09 0.00 39.32 3.74
129 130 1.655484 GCACCATTTGGCCATAAAGC 58.345 50.000 6.09 2.60 39.32 3.51
137 138 1.767654 AAACAGGGGCACCATTTGGC 61.768 55.000 8.31 0.00 44.85 4.52
138 139 0.764271 AAAACAGGGGCACCATTTGG 59.236 50.000 8.31 0.00 44.85 3.28
139 140 2.220313 CAAAAACAGGGGCACCATTTG 58.780 47.619 8.31 9.45 44.85 2.32
140 141 1.843206 ACAAAAACAGGGGCACCATTT 59.157 42.857 8.31 4.23 44.85 2.32
141 142 1.140652 CACAAAAACAGGGGCACCATT 59.859 47.619 8.31 0.00 44.85 3.16
145 146 0.107945 TTGCACAAAAACAGGGGCAC 60.108 50.000 0.00 0.00 0.00 5.01
146 147 0.615331 TTTGCACAAAAACAGGGGCA 59.385 45.000 0.00 0.00 0.00 5.36
147 148 1.743996 TTTTGCACAAAAACAGGGGC 58.256 45.000 6.09 0.00 37.35 5.80
154 155 3.935828 GGCTACCAAGTTTTGCACAAAAA 59.064 39.130 9.96 0.00 41.37 1.94
155 156 3.055819 TGGCTACCAAGTTTTGCACAAAA 60.056 39.130 4.47 4.47 37.90 2.44
156 157 2.497675 TGGCTACCAAGTTTTGCACAAA 59.502 40.909 0.00 0.00 0.00 2.83
157 158 2.100584 CTGGCTACCAAGTTTTGCACAA 59.899 45.455 0.00 0.00 30.80 3.33
158 159 1.680735 CTGGCTACCAAGTTTTGCACA 59.319 47.619 0.00 0.00 30.80 4.57
159 160 1.602920 GCTGGCTACCAAGTTTTGCAC 60.603 52.381 0.00 0.00 30.80 4.57
160 161 0.673437 GCTGGCTACCAAGTTTTGCA 59.327 50.000 0.00 0.00 30.80 4.08
161 162 0.387239 CGCTGGCTACCAAGTTTTGC 60.387 55.000 0.00 0.00 30.80 3.68
162 163 1.234821 TCGCTGGCTACCAAGTTTTG 58.765 50.000 0.00 0.00 30.80 2.44
163 164 1.812571 CATCGCTGGCTACCAAGTTTT 59.187 47.619 0.00 0.00 30.80 2.43
164 165 1.453155 CATCGCTGGCTACCAAGTTT 58.547 50.000 0.00 0.00 30.80 2.66
165 166 1.026718 GCATCGCTGGCTACCAAGTT 61.027 55.000 0.00 0.00 30.80 2.66
166 167 1.450312 GCATCGCTGGCTACCAAGT 60.450 57.895 0.00 0.00 30.80 3.16
167 168 1.153289 AGCATCGCTGGCTACCAAG 60.153 57.895 0.00 0.00 40.47 3.61
168 169 2.989639 AGCATCGCTGGCTACCAA 59.010 55.556 0.00 0.00 40.47 3.67
177 178 2.799814 AAGAGCACAGCAGCATCGCT 62.800 55.000 2.36 2.36 45.21 4.93
178 179 1.919956 AAAGAGCACAGCAGCATCGC 61.920 55.000 0.00 0.00 36.85 4.58
179 180 0.179197 CAAAGAGCACAGCAGCATCG 60.179 55.000 0.00 0.00 36.85 3.84
180 181 0.170561 CCAAAGAGCACAGCAGCATC 59.829 55.000 0.00 0.00 36.85 3.91
181 182 0.538977 ACCAAAGAGCACAGCAGCAT 60.539 50.000 0.00 0.00 36.85 3.79
182 183 0.752743 AACCAAAGAGCACAGCAGCA 60.753 50.000 0.00 0.00 36.85 4.41
183 184 1.238439 TAACCAAAGAGCACAGCAGC 58.762 50.000 0.00 0.00 0.00 5.25
184 185 3.366679 CCATTAACCAAAGAGCACAGCAG 60.367 47.826 0.00 0.00 0.00 4.24
185 186 2.557924 CCATTAACCAAAGAGCACAGCA 59.442 45.455 0.00 0.00 0.00 4.41
186 187 2.819608 TCCATTAACCAAAGAGCACAGC 59.180 45.455 0.00 0.00 0.00 4.40
187 188 5.649782 ATTCCATTAACCAAAGAGCACAG 57.350 39.130 0.00 0.00 0.00 3.66
188 189 7.531857 TTTATTCCATTAACCAAAGAGCACA 57.468 32.000 0.00 0.00 0.00 4.57
230 231 4.215908 GAGGGTTTCAAGGGAGAGTTTTT 58.784 43.478 0.00 0.00 0.00 1.94
231 232 3.747708 CGAGGGTTTCAAGGGAGAGTTTT 60.748 47.826 0.00 0.00 0.00 2.43
232 233 2.224548 CGAGGGTTTCAAGGGAGAGTTT 60.225 50.000 0.00 0.00 0.00 2.66
294 295 3.458163 CGGGCCGAGGTAAGCAGA 61.458 66.667 24.41 0.00 0.00 4.26
316 317 4.500116 GCCGTCTCCGCCTCACTC 62.500 72.222 0.00 0.00 0.00 3.51
333 335 2.109425 AACTCGAAAAATCCCCTCCG 57.891 50.000 0.00 0.00 0.00 4.63
334 336 2.418976 CGAAACTCGAAAAATCCCCTCC 59.581 50.000 0.00 0.00 43.74 4.30
335 337 2.418976 CCGAAACTCGAAAAATCCCCTC 59.581 50.000 0.00 0.00 43.74 4.30
336 338 2.433436 CCGAAACTCGAAAAATCCCCT 58.567 47.619 0.00 0.00 43.74 4.79
338 340 1.810755 AGCCGAAACTCGAAAAATCCC 59.189 47.619 0.00 0.00 43.74 3.85
339 341 3.234386 CAAGCCGAAACTCGAAAAATCC 58.766 45.455 0.00 0.00 43.74 3.01
343 385 0.309612 GGCAAGCCGAAACTCGAAAA 59.690 50.000 0.00 0.00 43.74 2.29
356 427 1.823041 GAGATGGGAGCAGGCAAGC 60.823 63.158 0.00 0.00 0.00 4.01
360 431 1.127343 AGTAAGAGATGGGAGCAGGC 58.873 55.000 0.00 0.00 0.00 4.85
361 432 2.768527 TGAAGTAAGAGATGGGAGCAGG 59.231 50.000 0.00 0.00 0.00 4.85
386 457 2.241160 TGTGCTCACTTAACCTCCGTA 58.759 47.619 1.47 0.00 0.00 4.02
387 458 1.045407 TGTGCTCACTTAACCTCCGT 58.955 50.000 1.47 0.00 0.00 4.69
389 460 2.808543 CTGTTGTGCTCACTTAACCTCC 59.191 50.000 1.47 0.00 0.00 4.30
391 462 3.134804 ACTCTGTTGTGCTCACTTAACCT 59.865 43.478 1.47 0.00 0.00 3.50
393 464 4.786609 GCAACTCTGTTGTGCTCACTTAAC 60.787 45.833 11.35 0.00 0.00 2.01
395 466 2.872245 GCAACTCTGTTGTGCTCACTTA 59.128 45.455 11.35 0.00 0.00 2.24
396 467 1.672881 GCAACTCTGTTGTGCTCACTT 59.327 47.619 11.35 0.00 0.00 3.16
397 468 1.303309 GCAACTCTGTTGTGCTCACT 58.697 50.000 11.35 0.00 0.00 3.41
398 469 0.308993 GGCAACTCTGTTGTGCTCAC 59.691 55.000 11.35 0.00 0.00 3.51
399 470 0.819259 GGGCAACTCTGTTGTGCTCA 60.819 55.000 11.35 0.00 0.00 4.26
400 471 0.819259 TGGGCAACTCTGTTGTGCTC 60.819 55.000 11.35 0.58 0.00 4.26
401 472 0.395586 TTGGGCAACTCTGTTGTGCT 60.396 50.000 11.35 0.00 0.00 4.40
402 473 0.249031 GTTGGGCAACTCTGTTGTGC 60.249 55.000 11.35 0.00 38.25 4.57
403 474 3.944871 GTTGGGCAACTCTGTTGTG 57.055 52.632 11.35 0.00 38.25 3.33
412 483 4.518970 TGTCTTCTTCATTAGTTGGGCAAC 59.481 41.667 0.00 0.00 41.45 4.17
414 485 4.072131 GTGTCTTCTTCATTAGTTGGGCA 58.928 43.478 0.00 0.00 0.00 5.36
415 486 3.125316 CGTGTCTTCTTCATTAGTTGGGC 59.875 47.826 0.00 0.00 0.00 5.36
416 487 4.315803 ACGTGTCTTCTTCATTAGTTGGG 58.684 43.478 0.00 0.00 0.00 4.12
417 488 5.107065 GGAACGTGTCTTCTTCATTAGTTGG 60.107 44.000 0.00 0.00 0.00 3.77
418 489 5.465390 TGGAACGTGTCTTCTTCATTAGTTG 59.535 40.000 0.00 0.00 0.00 3.16
419 490 5.607477 TGGAACGTGTCTTCTTCATTAGTT 58.393 37.500 0.00 0.00 0.00 2.24
420 491 5.209818 TGGAACGTGTCTTCTTCATTAGT 57.790 39.130 0.00 0.00 0.00 2.24
532 603 3.768757 CTGAATAAACCAATCAGGCCCAA 59.231 43.478 0.00 0.00 43.14 4.12
968 1040 3.324556 GGATTGCTAAGATCTCAGCCTCT 59.675 47.826 15.53 0.00 36.95 3.69
1046 1120 4.084223 CCATGTTCACTGCTTTCAAATTGC 60.084 41.667 0.00 0.00 0.00 3.56
1227 3287 1.078497 TGACCCAAGCCATACAGCG 60.078 57.895 0.00 0.00 38.01 5.18
1346 3406 3.133901 CCAAGGTTGTAAGGTTTTTGCCT 59.866 43.478 0.00 0.00 41.41 4.75
1348 3408 2.869801 GCCAAGGTTGTAAGGTTTTTGC 59.130 45.455 0.00 0.00 0.00 3.68
1349 3409 3.118592 TGGCCAAGGTTGTAAGGTTTTTG 60.119 43.478 0.61 0.00 0.00 2.44
1350 3410 3.108376 TGGCCAAGGTTGTAAGGTTTTT 58.892 40.909 0.61 0.00 0.00 1.94
1351 3411 2.432874 GTGGCCAAGGTTGTAAGGTTTT 59.567 45.455 7.24 0.00 0.00 2.43
1387 3447 1.598130 GCTTGTTCGGGTCTGTGCT 60.598 57.895 0.00 0.00 0.00 4.40
1413 3473 1.473258 TGGAGCTTGCACTTTGTGTT 58.527 45.000 0.00 0.00 35.75 3.32
1433 3493 4.954202 ACATTGATGAGCAAGATTGATGGT 59.046 37.500 0.00 0.00 40.42 3.55
1436 3496 6.293462 CGATGACATTGATGAGCAAGATTGAT 60.293 38.462 0.00 0.00 40.42 2.57
1442 3502 2.286831 GGCGATGACATTGATGAGCAAG 60.287 50.000 6.88 0.00 40.42 4.01
1453 3513 1.520494 GCTGATGATGGCGATGACAT 58.480 50.000 0.00 0.00 31.76 3.06
1454 3514 2.996444 GCTGATGATGGCGATGACA 58.004 52.632 0.00 0.00 0.00 3.58
1471 3531 0.166814 GGCACTTCAGTTGATGACGC 59.833 55.000 2.45 4.53 37.77 5.19
1473 3533 2.079925 GAGGGCACTTCAGTTGATGAC 58.920 52.381 0.00 0.00 37.77 3.06
1474 3534 1.338105 CGAGGGCACTTCAGTTGATGA 60.338 52.381 0.00 0.00 35.62 2.92
1475 3535 1.081892 CGAGGGCACTTCAGTTGATG 58.918 55.000 0.00 0.00 0.00 3.07
1476 3536 0.976641 TCGAGGGCACTTCAGTTGAT 59.023 50.000 0.00 0.00 0.00 2.57
1477 3537 0.033504 GTCGAGGGCACTTCAGTTGA 59.966 55.000 0.00 0.00 0.00 3.18
1478 3538 0.034059 AGTCGAGGGCACTTCAGTTG 59.966 55.000 0.00 0.00 0.00 3.16
1479 3539 0.759346 AAGTCGAGGGCACTTCAGTT 59.241 50.000 0.00 0.00 27.00 3.16
1480 3540 0.034059 CAAGTCGAGGGCACTTCAGT 59.966 55.000 0.00 0.00 31.40 3.41
1481 3541 0.034059 ACAAGTCGAGGGCACTTCAG 59.966 55.000 0.00 0.00 31.40 3.02
1482 3542 0.033504 GACAAGTCGAGGGCACTTCA 59.966 55.000 0.00 0.00 31.40 3.02
1483 3543 2.828933 GACAAGTCGAGGGCACTTC 58.171 57.895 0.00 0.00 31.40 3.01
1498 3558 0.900182 ATGTGGAGCCAGAGTCGACA 60.900 55.000 19.50 0.00 37.11 4.35
1499 3559 0.179124 GATGTGGAGCCAGAGTCGAC 60.179 60.000 7.70 7.70 0.00 4.20
1500 3560 0.323816 AGATGTGGAGCCAGAGTCGA 60.324 55.000 0.00 0.00 0.00 4.20
1504 3564 1.483827 TGCTAAGATGTGGAGCCAGAG 59.516 52.381 0.00 0.00 35.24 3.35
1508 3568 0.253044 TGGTGCTAAGATGTGGAGCC 59.747 55.000 0.00 0.00 35.24 4.70
1528 3588 1.207089 CTCCCTCTGTTTACATGCCGA 59.793 52.381 0.00 0.00 0.00 5.54
1540 3600 8.927675 AGAAACAGTAGTATATACTCCCTCTG 57.072 38.462 18.68 20.76 37.73 3.35
1542 3602 9.352191 TCAAGAAACAGTAGTATATACTCCCTC 57.648 37.037 18.68 8.49 37.73 4.30
1551 3611 9.590451 CCCGTTTATTCAAGAAACAGTAGTATA 57.410 33.333 8.31 0.00 36.74 1.47
1552 3612 8.316214 TCCCGTTTATTCAAGAAACAGTAGTAT 58.684 33.333 8.31 0.00 36.74 2.12
1553 3613 7.669427 TCCCGTTTATTCAAGAAACAGTAGTA 58.331 34.615 8.31 0.00 36.74 1.82
1554 3614 6.527423 TCCCGTTTATTCAAGAAACAGTAGT 58.473 36.000 8.31 0.00 36.74 2.73
1556 3616 8.316214 AGTATCCCGTTTATTCAAGAAACAGTA 58.684 33.333 8.31 0.00 36.74 2.74
1558 3618 7.611213 AGTATCCCGTTTATTCAAGAAACAG 57.389 36.000 8.31 0.00 36.74 3.16
1559 3619 7.662258 TCAAGTATCCCGTTTATTCAAGAAACA 59.338 33.333 8.31 0.00 36.74 2.83
1590 4311 8.958506 TGCTACAGTTTTTGGAGTAACTTTTTA 58.041 29.630 0.00 0.00 40.17 1.52
1597 4318 7.399245 AAAGTTGCTACAGTTTTTGGAGTAA 57.601 32.000 0.13 0.00 39.68 2.24
1599 4320 5.163550 GGAAAGTTGCTACAGTTTTTGGAGT 60.164 40.000 0.13 0.00 40.17 3.85
1600 4321 5.281727 GGAAAGTTGCTACAGTTTTTGGAG 58.718 41.667 0.13 0.00 41.06 3.86
1609 4351 4.918810 ACAAAAGGGAAAGTTGCTACAG 57.081 40.909 0.13 0.00 0.00 2.74
1634 4377 2.630580 AGTCAGCGAGAGAAGGAAAACT 59.369 45.455 0.00 0.00 0.00 2.66
1661 4404 2.109126 GGGGTCAGCGCTCAATGAC 61.109 63.158 7.13 13.41 44.10 3.06
1664 4407 2.293318 TGAGGGGTCAGCGCTCAAT 61.293 57.895 20.37 0.00 0.00 2.57
1670 4413 1.802880 CGATAAAGTGAGGGGTCAGCG 60.803 57.143 0.00 0.00 0.00 5.18
1672 4415 1.473434 GGCGATAAAGTGAGGGGTCAG 60.473 57.143 0.00 0.00 0.00 3.51
1692 4435 2.428890 AGTAAGAATCGCAGTGGGAGAG 59.571 50.000 15.69 0.00 0.00 3.20
1699 4442 0.179108 GCCCGAGTAAGAATCGCAGT 60.179 55.000 0.00 0.00 38.84 4.40
1702 4445 2.125685 GTTAGCCCGAGTAAGAATCGC 58.874 52.381 0.00 0.00 38.84 4.58
1705 4448 2.835764 TGGTGTTAGCCCGAGTAAGAAT 59.164 45.455 0.00 0.00 0.00 2.40
1710 4453 1.563924 ATGTGGTGTTAGCCCGAGTA 58.436 50.000 0.00 0.00 0.00 2.59
1714 4457 1.395608 CGTTTATGTGGTGTTAGCCCG 59.604 52.381 0.00 0.00 0.00 6.13
1717 4460 2.413634 GGTGCGTTTATGTGGTGTTAGC 60.414 50.000 0.00 0.00 0.00 3.09
1720 4463 1.681538 TGGTGCGTTTATGTGGTGTT 58.318 45.000 0.00 0.00 0.00 3.32
1734 4477 4.402155 TGATTCCTATGTTCCAAATGGTGC 59.598 41.667 0.00 0.00 36.34 5.01
1748 4491 2.702592 TCCGGCGTTTTGATTCCTAT 57.297 45.000 6.01 0.00 0.00 2.57
1761 4504 1.466950 TGCAGTTTTTCTATTCCGGCG 59.533 47.619 0.00 0.00 0.00 6.46
1762 4505 3.190535 TCTTGCAGTTTTTCTATTCCGGC 59.809 43.478 0.00 0.00 0.00 6.13
1763 4506 5.371115 TTCTTGCAGTTTTTCTATTCCGG 57.629 39.130 0.00 0.00 0.00 5.14
1764 4507 7.083858 TCATTTCTTGCAGTTTTTCTATTCCG 58.916 34.615 0.00 0.00 0.00 4.30
1776 4520 8.834465 GTTACATGATATCTCATTTCTTGCAGT 58.166 33.333 0.00 0.00 40.20 4.40
1817 4561 6.511416 TGGTGTATTCTTGTGTTTTGGATTG 58.489 36.000 0.00 0.00 0.00 2.67
1825 4569 4.275936 GCAAGTCTGGTGTATTCTTGTGTT 59.724 41.667 0.00 0.00 38.09 3.32
1834 4578 5.186198 GTCCAAATAGCAAGTCTGGTGTAT 58.814 41.667 0.00 0.00 34.40 2.29
1836 4580 3.181445 TGTCCAAATAGCAAGTCTGGTGT 60.181 43.478 0.00 0.00 34.40 4.16
1838 4582 3.412386 GTGTCCAAATAGCAAGTCTGGT 58.588 45.455 0.00 0.00 37.06 4.00
1839 4583 2.749621 GGTGTCCAAATAGCAAGTCTGG 59.250 50.000 0.00 0.00 0.00 3.86
1840 4584 3.189287 GTGGTGTCCAAATAGCAAGTCTG 59.811 47.826 0.00 0.00 34.18 3.51
1856 4620 3.630312 ACTGCGTTTTTCTTATGTGGTGT 59.370 39.130 0.00 0.00 0.00 4.16
1862 4626 8.420374 TCTAGGATTACTGCGTTTTTCTTATG 57.580 34.615 0.00 0.00 0.00 1.90
1888 4652 6.611613 AGACCTCATGTTTTCTCTCATGTA 57.388 37.500 0.00 0.00 41.22 2.29
1910 4674 4.202346 TGCAAAGGAATTTTGGAGGGAAAG 60.202 41.667 2.28 0.00 45.09 2.62
1997 4761 9.627123 TGGAGAATCGAATTCCTACATATTTTT 57.373 29.630 12.59 0.00 40.13 1.94
1998 4762 9.627123 TTGGAGAATCGAATTCCTACATATTTT 57.373 29.630 12.59 0.00 40.13 1.82
1999 4763 9.627123 TTTGGAGAATCGAATTCCTACATATTT 57.373 29.630 12.59 0.00 40.13 1.40
2000 4764 9.627123 TTTTGGAGAATCGAATTCCTACATATT 57.373 29.630 12.59 0.00 40.13 1.28
2001 4765 9.799106 ATTTTGGAGAATCGAATTCCTACATAT 57.201 29.630 12.59 0.00 40.13 1.78
2002 4766 9.627123 AATTTTGGAGAATCGAATTCCTACATA 57.373 29.630 12.59 0.00 40.13 2.29
2003 4767 8.525290 AATTTTGGAGAATCGAATTCCTACAT 57.475 30.769 12.59 3.72 40.13 2.29
2032 4796 3.340034 AGTTGAAACGGCGGAATATCAA 58.660 40.909 13.24 11.01 0.00 2.57
2034 4798 4.142773 TGAAAGTTGAAACGGCGGAATATC 60.143 41.667 13.24 2.21 0.00 1.63
2037 4801 1.950909 TGAAAGTTGAAACGGCGGAAT 59.049 42.857 13.24 0.00 0.00 3.01
2065 4829 2.833794 TGACTTGTTTCCGTTCTCAGG 58.166 47.619 0.00 0.00 0.00 3.86
2066 4830 4.058124 TCATGACTTGTTTCCGTTCTCAG 58.942 43.478 0.00 0.00 0.00 3.35
2077 4841 1.605710 GTGCTGCAGTCATGACTTGTT 59.394 47.619 25.84 2.17 40.20 2.83
2083 4847 3.056588 TGTAATGTGCTGCAGTCATGA 57.943 42.857 20.88 14.17 0.00 3.07
2085 4849 2.160219 CGTTGTAATGTGCTGCAGTCAT 59.840 45.455 16.64 16.66 0.00 3.06
2086 4850 1.530720 CGTTGTAATGTGCTGCAGTCA 59.469 47.619 16.64 15.12 0.00 3.41
2169 4933 8.466798 CCTCTTTGTTCCAAGTTCTTCTAAAAA 58.533 33.333 0.00 0.00 0.00 1.94
2170 4934 7.614192 ACCTCTTTGTTCCAAGTTCTTCTAAAA 59.386 33.333 0.00 0.00 0.00 1.52
2171 4935 7.116736 ACCTCTTTGTTCCAAGTTCTTCTAAA 58.883 34.615 0.00 0.00 0.00 1.85
2172 4936 6.659824 ACCTCTTTGTTCCAAGTTCTTCTAA 58.340 36.000 0.00 0.00 0.00 2.10
2173 4937 6.248569 ACCTCTTTGTTCCAAGTTCTTCTA 57.751 37.500 0.00 0.00 0.00 2.10
2174 4938 5.117406 ACCTCTTTGTTCCAAGTTCTTCT 57.883 39.130 0.00 0.00 0.00 2.85
2175 4939 7.228706 TGAATACCTCTTTGTTCCAAGTTCTTC 59.771 37.037 0.00 0.00 0.00 2.87
2176 4940 7.060421 TGAATACCTCTTTGTTCCAAGTTCTT 58.940 34.615 0.00 0.00 0.00 2.52
2177 4941 6.601332 TGAATACCTCTTTGTTCCAAGTTCT 58.399 36.000 0.00 0.00 0.00 3.01
2178 4942 6.072452 CCTGAATACCTCTTTGTTCCAAGTTC 60.072 42.308 0.00 0.00 0.00 3.01
2179 4943 5.770162 CCTGAATACCTCTTTGTTCCAAGTT 59.230 40.000 0.00 0.00 0.00 2.66
2180 4944 5.316987 CCTGAATACCTCTTTGTTCCAAGT 58.683 41.667 0.00 0.00 0.00 3.16
2181 4945 4.702131 CCCTGAATACCTCTTTGTTCCAAG 59.298 45.833 0.00 0.00 0.00 3.61
2182 4946 4.662278 CCCTGAATACCTCTTTGTTCCAA 58.338 43.478 0.00 0.00 0.00 3.53
2183 4947 3.561313 GCCCTGAATACCTCTTTGTTCCA 60.561 47.826 0.00 0.00 0.00 3.53
2184 4948 3.017442 GCCCTGAATACCTCTTTGTTCC 58.983 50.000 0.00 0.00 0.00 3.62
2185 4949 2.678336 CGCCCTGAATACCTCTTTGTTC 59.322 50.000 0.00 0.00 0.00 3.18
2186 4950 2.039879 ACGCCCTGAATACCTCTTTGTT 59.960 45.455 0.00 0.00 0.00 2.83
2187 4951 1.628846 ACGCCCTGAATACCTCTTTGT 59.371 47.619 0.00 0.00 0.00 2.83
2188 4952 2.403252 ACGCCCTGAATACCTCTTTG 57.597 50.000 0.00 0.00 0.00 2.77
2189 4953 2.304761 TGAACGCCCTGAATACCTCTTT 59.695 45.455 0.00 0.00 0.00 2.52
2190 4954 1.906574 TGAACGCCCTGAATACCTCTT 59.093 47.619 0.00 0.00 0.00 2.85
2191 4955 1.568504 TGAACGCCCTGAATACCTCT 58.431 50.000 0.00 0.00 0.00 3.69
2192 4956 2.622064 ATGAACGCCCTGAATACCTC 57.378 50.000 0.00 0.00 0.00 3.85
2193 4957 4.497291 TTTATGAACGCCCTGAATACCT 57.503 40.909 0.00 0.00 0.00 3.08
2194 4958 5.570234 TTTTTATGAACGCCCTGAATACC 57.430 39.130 0.00 0.00 0.00 2.73
2224 4988 2.090210 TGTCCAGGGCCTAGATATTGGA 60.090 50.000 5.28 4.76 32.62 3.53
2247 5011 1.384643 ATCAGGACTAGGTGGGGCC 60.385 63.158 0.00 0.00 37.58 5.80
2273 5038 5.000591 TGAGTCAAGATAAACCGCAAATCA 58.999 37.500 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.