Multiple sequence alignment - TraesCS2B01G129600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G129600 chr2B 100.000 6505 0 0 1 6505 97195976 97189472 0.000000e+00 12013.0
1 TraesCS2B01G129600 chr2D 90.458 2882 150 56 425 3221 61985171 61982330 0.000000e+00 3683.0
2 TraesCS2B01G129600 chr2D 86.601 2045 151 45 4497 6503 61981161 61979202 0.000000e+00 2145.0
3 TraesCS2B01G129600 chr2D 83.687 613 37 33 3897 4490 61981814 61981246 2.690000e-143 520.0
4 TraesCS2B01G129600 chr2D 86.797 462 34 17 3298 3736 61982334 61981877 2.110000e-134 490.0
5 TraesCS2B01G129600 chr2D 88.780 410 24 9 4 409 61985546 61985155 3.530000e-132 483.0
6 TraesCS2B01G129600 chr2A 87.721 2891 202 81 1088 3872 62303993 62301150 0.000000e+00 3230.0
7 TraesCS2B01G129600 chr2A 85.608 1077 75 43 4497 5549 62300393 62299373 0.000000e+00 1057.0
8 TraesCS2B01G129600 chr2A 89.819 609 53 4 5897 6503 62299071 62298470 0.000000e+00 773.0
9 TraesCS2B01G129600 chr2A 90.274 401 14 15 3872 4257 62301186 62300796 9.740000e-138 501.0
10 TraesCS2B01G129600 chr2A 90.301 299 19 7 694 989 62304542 62304251 3.680000e-102 383.0
11 TraesCS2B01G129600 chr2A 91.827 208 9 5 4292 4493 62300667 62300462 3.840000e-72 283.0
12 TraesCS2B01G129600 chr2A 77.546 432 30 22 1 409 62305093 62304706 1.430000e-46 198.0
13 TraesCS2B01G129600 chr2A 83.158 95 10 4 5603 5691 62299368 62299274 1.500000e-11 82.4
14 TraesCS2B01G129600 chr2A 97.143 35 1 0 4926 4960 93830144 93830110 7.040000e-05 60.2
15 TraesCS2B01G129600 chr2A 97.143 35 1 0 4926 4960 93849927 93849893 7.040000e-05 60.2
16 TraesCS2B01G129600 chr4A 86.090 266 37 0 1435 1700 114592044 114591779 2.970000e-73 287.0
17 TraesCS2B01G129600 chr4D 84.962 266 40 0 1435 1700 350492633 350492898 2.990000e-68 270.0
18 TraesCS2B01G129600 chr4D 100.000 31 0 0 4926 4956 432585006 432584976 2.530000e-04 58.4
19 TraesCS2B01G129600 chr4B 84.962 266 40 0 1435 1700 433641729 433641994 2.990000e-68 270.0
20 TraesCS2B01G129600 chr6B 100.000 33 0 0 4926 4958 647707567 647707599 1.960000e-05 62.1
21 TraesCS2B01G129600 chr3D 100.000 33 0 0 4926 4958 277606235 277606203 1.960000e-05 62.1
22 TraesCS2B01G129600 chr3D 95.000 40 1 1 4926 4964 328344634 328344595 1.960000e-05 62.1
23 TraesCS2B01G129600 chr3A 100.000 32 0 0 4926 4957 742381284 742381315 7.040000e-05 60.2
24 TraesCS2B01G129600 chr5D 100.000 31 0 0 4926 4956 487986995 487986965 2.530000e-04 58.4
25 TraesCS2B01G129600 chr1A 100.000 31 0 0 4926 4956 24453079 24453049 2.530000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G129600 chr2B 97189472 97195976 6504 True 12013.000 12013 100.00000 1 6505 1 chr2B.!!$R1 6504
1 TraesCS2B01G129600 chr2D 61979202 61985546 6344 True 1464.200 3683 87.26460 4 6503 5 chr2D.!!$R1 6499
2 TraesCS2B01G129600 chr2A 62298470 62305093 6623 True 813.425 3230 87.03175 1 6503 8 chr2A.!!$R3 6502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
476 504 0.162933 GTTATCACACGTGCACGGTG 59.837 55.0 39.21 36.76 44.95 4.94 F
1042 1172 0.180171 CTCAGGAGCCGAGAGAGAGA 59.820 60.0 6.26 0.00 31.84 3.10 F
1542 1825 0.599204 TCGACAACTTCTTCACGGGC 60.599 55.0 0.00 0.00 0.00 6.13 F
2482 2797 0.677842 ACGCTTCCACGTAACTTCCT 59.322 50.0 0.00 0.00 46.19 3.36 F
3667 4043 0.035458 AGGTTAGTCACACAGCAGCC 59.965 55.0 0.00 0.00 0.00 4.85 F
4499 5105 0.036306 CTAGCGTTTTGGACCACCCT 59.964 55.0 0.00 0.00 35.38 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1856 2139 0.394192 GAGATGTGATGATGGGCGGA 59.606 55.000 0.00 0.0 0.00 5.54 R
1857 2140 0.395686 AGAGATGTGATGATGGGCGG 59.604 55.000 0.00 0.0 0.00 6.13 R
3087 3426 1.000607 TGCGTGACTGTAGTTGACTCC 60.001 52.381 0.00 0.0 0.00 3.85 R
4480 5010 0.036306 AGGGTGGTCCAAAACGCTAG 59.964 55.000 0.00 0.0 37.76 3.42 R
4927 5576 0.107017 AGCCAGGATTTCCGACATGG 60.107 55.000 0.00 0.0 42.08 3.66 R
5579 6244 0.108520 TTTCGGGCACGGTCATAGTC 60.109 55.000 9.32 0.0 41.39 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 113 3.212685 GAGTTCGTTAGCCTAGCCTAGA 58.787 50.000 0.00 0.00 0.00 2.43
192 207 1.129437 GACCCACACGTAGTACGAGAC 59.871 57.143 28.47 8.46 46.05 3.36
193 208 1.271054 ACCCACACGTAGTACGAGACT 60.271 52.381 28.47 3.57 46.05 3.24
194 209 2.028112 ACCCACACGTAGTACGAGACTA 60.028 50.000 28.47 0.00 46.05 2.59
291 311 1.277842 TGACATGTGCACCGTATCCTT 59.722 47.619 15.69 0.00 0.00 3.36
307 327 3.122250 CTTAGGCTACGACGCGGCT 62.122 63.158 11.76 16.05 39.54 5.52
310 330 0.320683 TAGGCTACGACGCGGCTATA 60.321 55.000 11.76 0.62 37.26 1.31
311 331 0.959372 AGGCTACGACGCGGCTATAT 60.959 55.000 11.76 0.00 33.94 0.86
362 382 3.346426 GTTGAGTGAACCTGGGCAT 57.654 52.632 0.00 0.00 0.00 4.40
363 383 0.883833 GTTGAGTGAACCTGGGCATG 59.116 55.000 0.00 0.00 0.00 4.06
364 384 0.895100 TTGAGTGAACCTGGGCATGC 60.895 55.000 9.90 9.90 0.00 4.06
365 385 1.001641 GAGTGAACCTGGGCATGCT 60.002 57.895 18.92 0.00 0.00 3.79
396 424 1.531748 CTTGACACCGCCCCCATAT 59.468 57.895 0.00 0.00 0.00 1.78
468 496 1.860676 ACAACGCTGTTATCACACGT 58.139 45.000 3.02 3.02 40.24 4.49
471 499 0.598942 ACGCTGTTATCACACGTGCA 60.599 50.000 17.22 2.20 38.43 4.57
472 500 0.179250 CGCTGTTATCACACGTGCAC 60.179 55.000 17.22 6.82 0.00 4.57
474 502 0.438445 CTGTTATCACACGTGCACGG 59.562 55.000 39.21 29.52 44.95 4.94
475 503 0.249531 TGTTATCACACGTGCACGGT 60.250 50.000 39.21 30.15 44.95 4.83
476 504 0.162933 GTTATCACACGTGCACGGTG 59.837 55.000 39.21 36.76 44.95 4.94
507 538 2.713967 CCTCCCCAAAGCGCCAATG 61.714 63.158 2.29 0.00 0.00 2.82
529 564 4.329545 GCTGGACCACGCCAAGGA 62.330 66.667 0.00 0.00 37.52 3.36
530 565 2.046892 CTGGACCACGCCAAGGAG 60.047 66.667 0.00 0.00 37.52 3.69
531 566 2.847234 TGGACCACGCCAAGGAGT 60.847 61.111 0.00 0.00 34.31 3.85
532 567 2.358737 GGACCACGCCAAGGAGTG 60.359 66.667 14.99 14.99 43.77 3.51
536 571 1.371183 CCACGCCAAGGAGTGAGAA 59.629 57.895 22.16 0.00 46.34 2.87
537 572 0.951040 CCACGCCAAGGAGTGAGAAC 60.951 60.000 22.16 0.00 46.34 3.01
539 574 1.006102 CGCCAAGGAGTGAGAACGT 60.006 57.895 0.00 0.00 0.00 3.99
540 575 0.242825 CGCCAAGGAGTGAGAACGTA 59.757 55.000 0.00 0.00 0.00 3.57
541 576 1.732732 CGCCAAGGAGTGAGAACGTAG 60.733 57.143 0.00 0.00 0.00 3.51
542 577 1.997669 CCAAGGAGTGAGAACGTAGC 58.002 55.000 0.00 0.00 0.00 3.58
543 578 1.272490 CCAAGGAGTGAGAACGTAGCA 59.728 52.381 0.00 0.00 0.00 3.49
544 579 2.329379 CAAGGAGTGAGAACGTAGCAC 58.671 52.381 7.13 7.13 0.00 4.40
547 582 2.059541 GGAGTGAGAACGTAGCACAAC 58.940 52.381 14.96 9.58 35.08 3.32
548 583 2.545113 GGAGTGAGAACGTAGCACAACA 60.545 50.000 14.96 0.00 35.08 3.33
549 584 2.470821 AGTGAGAACGTAGCACAACAC 58.529 47.619 14.96 7.60 35.08 3.32
617 669 2.299582 TCGAAATGGTCCTTTCCGTGTA 59.700 45.455 0.00 0.00 32.60 2.90
619 671 4.160065 TCGAAATGGTCCTTTCCGTGTATA 59.840 41.667 0.00 0.00 32.60 1.47
620 672 5.054477 CGAAATGGTCCTTTCCGTGTATAT 58.946 41.667 7.71 0.00 32.60 0.86
625 677 4.938832 TGGTCCTTTCCGTGTATATGTTTG 59.061 41.667 0.00 0.00 0.00 2.93
626 678 4.201881 GGTCCTTTCCGTGTATATGTTTGC 60.202 45.833 0.00 0.00 0.00 3.68
627 679 3.942748 TCCTTTCCGTGTATATGTTTGCC 59.057 43.478 0.00 0.00 0.00 4.52
628 680 3.066203 CCTTTCCGTGTATATGTTTGCCC 59.934 47.826 0.00 0.00 0.00 5.36
629 681 2.335316 TCCGTGTATATGTTTGCCCC 57.665 50.000 0.00 0.00 0.00 5.80
630 682 1.841277 TCCGTGTATATGTTTGCCCCT 59.159 47.619 0.00 0.00 0.00 4.79
631 683 1.946768 CCGTGTATATGTTTGCCCCTG 59.053 52.381 0.00 0.00 0.00 4.45
632 684 1.333619 CGTGTATATGTTTGCCCCTGC 59.666 52.381 0.00 0.00 38.26 4.85
848 960 4.853142 ACATCGAGGGGCGGGCTA 62.853 66.667 0.69 0.00 41.33 3.93
862 974 4.477975 GCTACGGCGCGTCTGACT 62.478 66.667 9.90 0.00 41.54 3.41
863 975 2.577112 CTACGGCGCGTCTGACTG 60.577 66.667 9.90 0.00 41.54 3.51
864 976 3.035576 CTACGGCGCGTCTGACTGA 62.036 63.158 9.90 0.00 41.54 3.41
867 979 2.875485 GGCGCGTCTGACTGACTA 59.125 61.111 8.43 0.00 43.25 2.59
998 1113 1.153429 AAATACGCGCCACTCCTCC 60.153 57.895 5.73 0.00 0.00 4.30
1015 1130 3.787001 CCCCTCTTCTCCCGCACC 61.787 72.222 0.00 0.00 0.00 5.01
1016 1131 3.003173 CCCTCTTCTCCCGCACCA 61.003 66.667 0.00 0.00 0.00 4.17
1017 1132 2.581354 CCTCTTCTCCCGCACCAG 59.419 66.667 0.00 0.00 0.00 4.00
1041 1171 2.706636 CTCAGGAGCCGAGAGAGAG 58.293 63.158 6.26 0.00 31.84 3.20
1042 1172 0.180171 CTCAGGAGCCGAGAGAGAGA 59.820 60.000 6.26 0.00 31.84 3.10
1043 1173 0.843309 TCAGGAGCCGAGAGAGAGAT 59.157 55.000 0.00 0.00 0.00 2.75
1044 1174 1.202758 TCAGGAGCCGAGAGAGAGATC 60.203 57.143 0.00 0.00 0.00 2.75
1045 1175 0.843309 AGGAGCCGAGAGAGAGATCA 59.157 55.000 0.00 0.00 0.00 2.92
1046 1176 0.951558 GGAGCCGAGAGAGAGATCAC 59.048 60.000 0.00 0.00 0.00 3.06
1047 1177 1.674359 GAGCCGAGAGAGAGATCACA 58.326 55.000 0.00 0.00 0.00 3.58
1048 1178 1.603802 GAGCCGAGAGAGAGATCACAG 59.396 57.143 0.00 0.00 0.00 3.66
1049 1179 0.667993 GCCGAGAGAGAGATCACAGG 59.332 60.000 0.00 0.00 0.00 4.00
1050 1180 1.317613 CCGAGAGAGAGATCACAGGG 58.682 60.000 0.00 0.00 0.00 4.45
1051 1181 1.133945 CCGAGAGAGAGATCACAGGGA 60.134 57.143 0.00 0.00 0.00 4.20
1052 1182 1.946768 CGAGAGAGAGATCACAGGGAC 59.053 57.143 0.00 0.00 0.00 4.46
1053 1183 2.682269 CGAGAGAGAGATCACAGGGACA 60.682 54.545 0.00 0.00 0.00 4.02
1070 1200 1.951130 CAAGTCCATCCCGCGATCG 60.951 63.158 11.69 11.69 0.00 3.69
1288 1565 3.498071 CCACCACCACCACCACCT 61.498 66.667 0.00 0.00 0.00 4.00
1290 1567 3.175710 ACCACCACCACCACCTCC 61.176 66.667 0.00 0.00 0.00 4.30
1293 1570 2.146724 CACCACCACCACCTCCTCA 61.147 63.158 0.00 0.00 0.00 3.86
1295 1572 1.376466 CCACCACCACCTCCTCAAG 59.624 63.158 0.00 0.00 0.00 3.02
1296 1573 1.302832 CACCACCACCTCCTCAAGC 60.303 63.158 0.00 0.00 0.00 4.01
1297 1574 1.770110 ACCACCACCTCCTCAAGCA 60.770 57.895 0.00 0.00 0.00 3.91
1298 1575 1.002868 CCACCACCTCCTCAAGCAG 60.003 63.158 0.00 0.00 0.00 4.24
1382 1662 2.107141 GATGGCGTTCGAGGAGGG 59.893 66.667 0.00 0.00 0.00 4.30
1542 1825 0.599204 TCGACAACTTCTTCACGGGC 60.599 55.000 0.00 0.00 0.00 6.13
1863 2146 3.376078 GGTACGTCACTCCGCCCA 61.376 66.667 0.00 0.00 0.00 5.36
1864 2147 2.718073 GGTACGTCACTCCGCCCAT 61.718 63.158 0.00 0.00 0.00 4.00
1865 2148 1.226888 GTACGTCACTCCGCCCATC 60.227 63.158 0.00 0.00 0.00 3.51
1866 2149 1.679641 TACGTCACTCCGCCCATCA 60.680 57.895 0.00 0.00 0.00 3.07
1867 2150 1.040893 TACGTCACTCCGCCCATCAT 61.041 55.000 0.00 0.00 0.00 2.45
1878 2161 2.141517 CGCCCATCATCACATCTCTTC 58.858 52.381 0.00 0.00 0.00 2.87
1880 2163 3.743584 CGCCCATCATCACATCTCTTCTT 60.744 47.826 0.00 0.00 0.00 2.52
1881 2164 3.814283 GCCCATCATCACATCTCTTCTTC 59.186 47.826 0.00 0.00 0.00 2.87
1882 2165 4.444591 GCCCATCATCACATCTCTTCTTCT 60.445 45.833 0.00 0.00 0.00 2.85
1884 2167 5.396548 CCCATCATCACATCTCTTCTTCTGT 60.397 44.000 0.00 0.00 0.00 3.41
1908 2206 1.203187 TCCTATCCTAGAGCCGCCATT 60.203 52.381 0.00 0.00 0.00 3.16
1946 2244 3.081048 TGTGGGAGCACACAGGATA 57.919 52.632 0.59 0.00 45.70 2.59
1976 2277 1.376543 CAGAAATGCTGCCATCGTCT 58.623 50.000 0.00 0.00 37.90 4.18
2121 2422 2.223572 GCCCTGCTTTAATCATTCACCG 60.224 50.000 0.00 0.00 0.00 4.94
2129 2430 1.645034 AATCATTCACCGCTCACTCG 58.355 50.000 0.00 0.00 0.00 4.18
2166 2467 3.861840 CTGGAAACGAAAGCATCCTCTA 58.138 45.455 0.00 0.00 39.25 2.43
2193 2494 8.743714 CACCTTTTCTTTCCATTATTAGAAGCT 58.256 33.333 0.00 0.00 0.00 3.74
2273 2575 4.622740 GCTGCAGTTAAACCAAGCTAATTG 59.377 41.667 16.64 0.00 38.74 2.32
2355 2661 1.203994 CGGATCTTCAACACCTACGGT 59.796 52.381 0.00 0.00 35.62 4.83
2376 2682 2.317689 CGCATGTGCATCGACGAC 59.682 61.111 0.00 0.00 42.21 4.34
2482 2797 0.677842 ACGCTTCCACGTAACTTCCT 59.322 50.000 0.00 0.00 46.19 3.36
2535 2859 2.175202 AGACTTCTCCCACTAGCACTG 58.825 52.381 0.00 0.00 0.00 3.66
2585 2913 8.740906 GGATCTACGATAGGAATTGATTAGTGA 58.259 37.037 0.00 0.00 43.77 3.41
2667 3000 2.625737 CCCACATGCAAGTCTACTGAG 58.374 52.381 0.00 0.00 0.00 3.35
2670 3003 4.067896 CCACATGCAAGTCTACTGAGTTT 58.932 43.478 0.00 0.00 33.89 2.66
2671 3004 4.516698 CCACATGCAAGTCTACTGAGTTTT 59.483 41.667 0.00 0.00 33.89 2.43
2824 3162 6.737254 AATCCGATTGTGTACAAGTTAAGG 57.263 37.500 0.00 0.00 39.47 2.69
2904 3242 1.070786 ACCTAGCAACACACCACCG 59.929 57.895 0.00 0.00 0.00 4.94
3063 3402 9.056164 AGCATGTTAAGAGCTTATGGAGATCCA 62.056 40.741 3.57 3.57 41.78 3.41
3086 3425 6.945072 CACTTATGGAGCTTACGGAAATAAC 58.055 40.000 0.00 0.00 0.00 1.89
3087 3426 5.751990 ACTTATGGAGCTTACGGAAATAACG 59.248 40.000 0.00 0.00 37.36 3.18
3089 3428 2.496871 TGGAGCTTACGGAAATAACGGA 59.503 45.455 0.00 0.00 35.23 4.69
3128 3467 2.040544 GCAAGATGGTCACACGGGG 61.041 63.158 0.00 0.00 0.00 5.73
3130 3469 2.525124 AAGATGGTCACACGGGGCA 61.525 57.895 0.00 0.00 0.00 5.36
3131 3470 1.852157 AAGATGGTCACACGGGGCAT 61.852 55.000 0.00 0.00 0.00 4.40
3136 3475 1.594833 GTCACACGGGGCATCACTA 59.405 57.895 0.00 0.00 0.00 2.74
3141 3480 0.756294 CACGGGGCATCACTATACCA 59.244 55.000 0.00 0.00 0.00 3.25
3182 3526 6.090898 CACGTACTCCAAAAATAGTCTTCAGG 59.909 42.308 0.00 0.00 0.00 3.86
3185 3529 5.561679 ACTCCAAAAATAGTCTTCAGGGAC 58.438 41.667 0.00 0.00 36.56 4.46
3195 3539 1.203300 TCTTCAGGGACACTCCATCCA 60.203 52.381 0.00 0.00 38.64 3.41
3217 3561 8.196802 TCCATTTCATAATGTAGCGCATATAC 57.803 34.615 11.47 3.95 39.62 1.47
3221 3565 7.812309 TTCATAATGTAGCGCATATACACTC 57.188 36.000 11.47 0.00 36.04 3.51
3227 3571 3.543680 AGCGCATATACACTCTTGGTT 57.456 42.857 11.47 0.00 0.00 3.67
3245 3589 4.439057 TGGTTAGGAGTGTCATTTATCGC 58.561 43.478 0.00 0.00 0.00 4.58
3254 3598 3.369756 GTGTCATTTATCGCGGAAGACAA 59.630 43.478 6.13 0.00 36.43 3.18
3280 3624 4.480480 CCCCCTTGCCTAGACTCA 57.520 61.111 0.00 0.00 0.00 3.41
3326 3672 8.908786 TTCTACCTACATGAATCATCATTTCC 57.091 34.615 0.00 0.00 43.89 3.13
3327 3673 8.033178 TCTACCTACATGAATCATCATTTCCA 57.967 34.615 0.00 0.00 43.89 3.53
3328 3674 8.493607 TCTACCTACATGAATCATCATTTCCAA 58.506 33.333 0.00 0.00 43.89 3.53
3329 3675 7.338800 ACCTACATGAATCATCATTTCCAAC 57.661 36.000 0.00 0.00 43.89 3.77
3344 3690 7.617225 TCATTTCCAACTTCGTTTATCCTCTA 58.383 34.615 0.00 0.00 0.00 2.43
3350 3696 6.210078 CAACTTCGTTTATCCTCTAGCTAGG 58.790 44.000 20.58 8.65 38.06 3.02
3351 3697 4.278919 ACTTCGTTTATCCTCTAGCTAGGC 59.721 45.833 20.58 0.00 36.51 3.93
3352 3698 4.101645 TCGTTTATCCTCTAGCTAGGCT 57.898 45.455 20.58 2.39 43.41 4.58
3359 3708 3.643237 TCCTCTAGCTAGGCTTTTGCTA 58.357 45.455 20.58 13.26 46.54 3.49
3476 3829 5.163854 CGCGGAATTAATTAAGCTAGATGGG 60.164 44.000 18.97 4.71 0.00 4.00
3543 3917 0.957395 CCCAAGCAGCTGACACGAAT 60.957 55.000 20.43 0.00 0.00 3.34
3622 3998 0.179105 GGTACGTGTGTGTGTGTGGA 60.179 55.000 0.00 0.00 0.00 4.02
3636 4012 5.352569 GTGTGTGTGGAGGAAGAAATGATAG 59.647 44.000 0.00 0.00 0.00 2.08
3650 4026 6.002704 AGAAATGATAGCATTAGCAGGAAGG 58.997 40.000 6.64 0.00 43.71 3.46
3652 4028 4.778213 TGATAGCATTAGCAGGAAGGTT 57.222 40.909 0.00 0.00 45.49 3.50
3662 4038 2.037772 AGCAGGAAGGTTAGTCACACAG 59.962 50.000 0.00 0.00 0.00 3.66
3664 4040 2.047061 AGGAAGGTTAGTCACACAGCA 58.953 47.619 0.00 0.00 0.00 4.41
3665 4041 2.037772 AGGAAGGTTAGTCACACAGCAG 59.962 50.000 0.00 0.00 0.00 4.24
3667 4043 0.035458 AGGTTAGTCACACAGCAGCC 59.965 55.000 0.00 0.00 0.00 4.85
3668 4044 0.250295 GGTTAGTCACACAGCAGCCA 60.250 55.000 0.00 0.00 0.00 4.75
3688 4071 2.668457 CACACACGGCTAGATGAAGAAC 59.332 50.000 0.00 0.00 0.00 3.01
3689 4072 2.563179 ACACACGGCTAGATGAAGAACT 59.437 45.455 0.00 0.00 0.00 3.01
3690 4073 2.926200 CACACGGCTAGATGAAGAACTG 59.074 50.000 0.00 0.00 0.00 3.16
3704 4088 1.912043 AGAACTGGTGATGCTTAGCCT 59.088 47.619 0.29 0.00 0.00 4.58
3706 4090 0.393537 ACTGGTGATGCTTAGCCTGC 60.394 55.000 0.29 0.00 0.00 4.85
3729 4113 2.885676 GCGCATAGACATGGCACGG 61.886 63.158 0.30 0.00 32.05 4.94
3733 4117 1.202177 GCATAGACATGGCACGGTTTG 60.202 52.381 0.00 0.00 32.36 2.93
3734 4118 2.083774 CATAGACATGGCACGGTTTGT 58.916 47.619 0.00 0.00 0.00 2.83
3735 4119 1.803334 TAGACATGGCACGGTTTGTC 58.197 50.000 0.00 9.58 38.97 3.18
3738 4122 1.172180 ACATGGCACGGTTTGTCCTG 61.172 55.000 0.00 0.00 0.00 3.86
3739 4123 1.603455 ATGGCACGGTTTGTCCTGG 60.603 57.895 0.00 0.00 0.00 4.45
3741 4125 2.983592 GCACGGTTTGTCCTGGGG 60.984 66.667 0.00 0.00 0.00 4.96
3742 4126 2.983592 CACGGTTTGTCCTGGGGC 60.984 66.667 0.00 0.00 0.00 5.80
3743 4127 3.494254 ACGGTTTGTCCTGGGGCA 61.494 61.111 0.00 0.00 0.00 5.36
3745 4129 2.342650 CGGTTTGTCCTGGGGCATG 61.343 63.158 0.00 0.00 0.00 4.06
3746 4130 2.649129 GGTTTGTCCTGGGGCATGC 61.649 63.158 9.90 9.90 0.00 4.06
3748 4132 1.607178 TTTGTCCTGGGGCATGCAG 60.607 57.895 21.36 8.36 0.00 4.41
3749 4133 2.370459 TTTGTCCTGGGGCATGCAGT 62.370 55.000 21.36 0.00 0.00 4.40
3750 4134 2.036256 GTCCTGGGGCATGCAGTT 59.964 61.111 21.36 0.00 0.00 3.16
3751 4135 2.036098 TCCTGGGGCATGCAGTTG 59.964 61.111 21.36 6.52 0.00 3.16
3752 4136 2.036098 CCTGGGGCATGCAGTTGA 59.964 61.111 21.36 0.00 0.00 3.18
3753 4137 1.380785 CCTGGGGCATGCAGTTGAT 60.381 57.895 21.36 0.00 0.00 2.57
3755 4139 1.721664 CTGGGGCATGCAGTTGATCG 61.722 60.000 21.36 0.00 0.00 3.69
3757 4141 0.820891 GGGGCATGCAGTTGATCGAT 60.821 55.000 21.36 0.00 0.00 3.59
3759 4143 1.302366 GGCATGCAGTTGATCGATCA 58.698 50.000 23.99 23.99 34.44 2.92
3762 4146 2.353889 GCATGCAGTTGATCGATCAGTT 59.646 45.455 25.95 16.28 38.19 3.16
3763 4147 3.787805 GCATGCAGTTGATCGATCAGTTG 60.788 47.826 25.95 25.51 38.19 3.16
3764 4148 3.317603 TGCAGTTGATCGATCAGTTGA 57.682 42.857 29.98 16.32 38.19 3.18
3765 4149 3.865446 TGCAGTTGATCGATCAGTTGAT 58.135 40.909 29.98 15.54 38.19 2.57
3766 4150 3.619929 TGCAGTTGATCGATCAGTTGATG 59.380 43.478 29.98 23.26 38.19 3.07
3768 4152 3.558829 CAGTTGATCGATCAGTTGATGGG 59.441 47.826 25.95 9.18 38.19 4.00
3769 4153 2.245159 TGATCGATCAGTTGATGGGC 57.755 50.000 23.99 0.00 34.37 5.36
3823 4233 0.947180 GGGTGTACGTGTGCGATGTT 60.947 55.000 0.00 0.00 42.00 2.71
3827 4237 1.714990 TGTACGTGTGCGATGTTAACG 59.285 47.619 0.00 0.00 42.00 3.18
3837 4247 3.305897 TGCGATGTTAACGACTGCTAATG 59.694 43.478 0.26 0.00 0.00 1.90
3838 4248 3.302480 GCGATGTTAACGACTGCTAATGG 60.302 47.826 0.26 0.00 0.00 3.16
3839 4249 3.863424 CGATGTTAACGACTGCTAATGGT 59.137 43.478 0.26 0.00 0.00 3.55
3840 4250 4.259810 CGATGTTAACGACTGCTAATGGTG 60.260 45.833 0.26 0.00 0.00 4.17
3841 4251 4.260139 TGTTAACGACTGCTAATGGTGA 57.740 40.909 0.26 0.00 0.00 4.02
3842 4252 3.991773 TGTTAACGACTGCTAATGGTGAC 59.008 43.478 0.26 0.00 0.00 3.67
3855 4265 2.746279 TGGTGACACTGGGTTGATTT 57.254 45.000 5.39 0.00 33.40 2.17
3856 4266 3.866703 TGGTGACACTGGGTTGATTTA 57.133 42.857 5.39 0.00 33.40 1.40
3857 4267 3.482436 TGGTGACACTGGGTTGATTTAC 58.518 45.455 5.39 0.00 33.40 2.01
3858 4268 2.482721 GGTGACACTGGGTTGATTTACG 59.517 50.000 5.39 0.00 0.00 3.18
3859 4269 3.395639 GTGACACTGGGTTGATTTACGA 58.604 45.455 0.00 0.00 0.00 3.43
3860 4270 4.000988 GTGACACTGGGTTGATTTACGAT 58.999 43.478 0.00 0.00 0.00 3.73
3861 4271 4.454504 GTGACACTGGGTTGATTTACGATT 59.545 41.667 0.00 0.00 0.00 3.34
3862 4272 4.454161 TGACACTGGGTTGATTTACGATTG 59.546 41.667 0.00 0.00 0.00 2.67
3863 4273 4.647611 ACACTGGGTTGATTTACGATTGA 58.352 39.130 0.00 0.00 0.00 2.57
3864 4274 5.253330 ACACTGGGTTGATTTACGATTGAT 58.747 37.500 0.00 0.00 0.00 2.57
3865 4275 5.710099 ACACTGGGTTGATTTACGATTGATT 59.290 36.000 0.00 0.00 0.00 2.57
3866 4276 6.029607 CACTGGGTTGATTTACGATTGATTG 58.970 40.000 0.00 0.00 0.00 2.67
3867 4277 5.125417 ACTGGGTTGATTTACGATTGATTGG 59.875 40.000 0.00 0.00 0.00 3.16
3868 4278 5.013547 TGGGTTGATTTACGATTGATTGGT 58.986 37.500 0.00 0.00 0.00 3.67
3869 4279 5.105957 TGGGTTGATTTACGATTGATTGGTG 60.106 40.000 0.00 0.00 0.00 4.17
3870 4280 4.798387 GGTTGATTTACGATTGATTGGTGC 59.202 41.667 0.00 0.00 0.00 5.01
3927 4337 3.080121 CGCTGAGGAAGGAGCCCT 61.080 66.667 0.00 0.00 36.57 5.19
4001 4411 2.246067 TCTGGTAAGCTCTCCCTCTCAT 59.754 50.000 4.95 0.00 0.00 2.90
4006 4416 2.244486 AGCTCTCCCTCTCATCAACA 57.756 50.000 0.00 0.00 0.00 3.33
4007 4417 1.830477 AGCTCTCCCTCTCATCAACAC 59.170 52.381 0.00 0.00 0.00 3.32
4008 4418 1.552337 GCTCTCCCTCTCATCAACACA 59.448 52.381 0.00 0.00 0.00 3.72
4012 4422 1.347707 TCCCTCTCATCAACACACACC 59.652 52.381 0.00 0.00 0.00 4.16
4027 4445 0.814010 ACACCGCCACAAGTCAAGAC 60.814 55.000 0.00 0.00 0.00 3.01
4033 4451 2.668457 CGCCACAAGTCAAGACTCATAC 59.332 50.000 2.78 0.00 41.58 2.39
4094 4514 3.734902 CGCATGCTTTTCCCTTCCATTAC 60.735 47.826 17.13 0.00 0.00 1.89
4096 4516 4.322650 GCATGCTTTTCCCTTCCATTACAA 60.323 41.667 11.37 0.00 0.00 2.41
4097 4517 5.413499 CATGCTTTTCCCTTCCATTACAAG 58.587 41.667 0.00 0.00 0.00 3.16
4098 4518 3.258123 TGCTTTTCCCTTCCATTACAAGC 59.742 43.478 0.00 0.00 36.70 4.01
4099 4519 3.511540 GCTTTTCCCTTCCATTACAAGCT 59.488 43.478 0.00 0.00 33.98 3.74
4179 4604 6.030228 GCTAAGCTAATTTAGTTGCAGTTGG 58.970 40.000 5.38 0.00 33.99 3.77
4195 4620 1.069227 GTTGGTTTCCATGTGCTCGAC 60.069 52.381 0.00 0.00 31.53 4.20
4203 4632 2.245159 CATGTGCTCGACCATGGTAT 57.755 50.000 19.80 2.28 35.82 2.73
4204 4633 1.869132 CATGTGCTCGACCATGGTATG 59.131 52.381 19.80 13.97 35.82 2.39
4241 4670 2.818130 TGCAATGCAACCTCCTTTTC 57.182 45.000 5.01 0.00 34.76 2.29
4253 4682 3.181428 ACCTCCTTTTCCCTCTCCTTTTG 60.181 47.826 0.00 0.00 0.00 2.44
4254 4683 2.822561 CTCCTTTTCCCTCTCCTTTTGC 59.177 50.000 0.00 0.00 0.00 3.68
4255 4684 2.447047 TCCTTTTCCCTCTCCTTTTGCT 59.553 45.455 0.00 0.00 0.00 3.91
4257 4686 3.490348 CTTTTCCCTCTCCTTTTGCTGA 58.510 45.455 0.00 0.00 0.00 4.26
4259 4688 2.030027 TCCCTCTCCTTTTGCTGAGA 57.970 50.000 0.00 0.00 36.28 3.27
4261 4690 3.724478 TCCCTCTCCTTTTGCTGAGATA 58.276 45.455 0.00 0.00 37.03 1.98
4266 4695 6.654161 CCCTCTCCTTTTGCTGAGATATAATG 59.346 42.308 0.00 0.00 37.03 1.90
4272 4701 5.936686 TTTGCTGAGATATAATGCTGAGC 57.063 39.130 0.00 0.00 40.99 4.26
4298 4813 0.611340 TGCCATGCCAATGCTACACA 60.611 50.000 0.00 0.00 38.71 3.72
4347 4872 2.950172 GCGTACGTGGGTGCTGTTG 61.950 63.158 17.90 0.00 0.00 3.33
4396 4921 4.771356 GTGGCGCTGCTACGTCGA 62.771 66.667 7.64 0.00 41.55 4.20
4443 4968 0.722848 CATTTTCCATTTGGCGCTGC 59.277 50.000 7.64 0.00 34.44 5.25
4478 5008 0.240411 GTACAGAGTCGCCGAGTTGT 59.760 55.000 12.17 12.17 0.00 3.32
4479 5009 0.240145 TACAGAGTCGCCGAGTTGTG 59.760 55.000 15.32 10.38 0.00 3.33
4480 5010 2.049063 AGAGTCGCCGAGTTGTGC 60.049 61.111 0.00 0.00 0.00 4.57
4481 5011 2.049063 GAGTCGCCGAGTTGTGCT 60.049 61.111 0.00 0.00 0.00 4.40
4482 5012 1.211969 GAGTCGCCGAGTTGTGCTA 59.788 57.895 0.00 0.00 0.00 3.49
4483 5013 0.798771 GAGTCGCCGAGTTGTGCTAG 60.799 60.000 0.00 0.00 0.00 3.42
4484 5014 2.126071 TCGCCGAGTTGTGCTAGC 60.126 61.111 8.10 8.10 0.00 3.42
4499 5105 0.036306 CTAGCGTTTTGGACCACCCT 59.964 55.000 0.00 0.00 35.38 4.34
4524 5130 0.610232 GGCTGTGGACCTCTTGCATT 60.610 55.000 11.90 0.00 0.00 3.56
4540 5146 1.129879 CATTTGCATCGTCGTGCTGC 61.130 55.000 16.80 13.14 45.27 5.25
4601 5222 2.004583 CTTCGACGGGAAGCAATGTA 57.995 50.000 5.69 0.00 45.21 2.29
4602 5223 1.659098 CTTCGACGGGAAGCAATGTAC 59.341 52.381 5.69 0.00 45.21 2.90
4672 5293 1.080093 AGATGGTGCACCGTACACG 60.080 57.895 30.40 0.00 38.98 4.49
4754 5379 3.576356 CCGATGGACACGGCATGC 61.576 66.667 9.90 9.90 43.74 4.06
4755 5380 2.819154 CGATGGACACGGCATGCA 60.819 61.111 21.36 0.00 0.00 3.96
4787 5412 3.690460 AGTAGCTTTCCATCACCCTTTG 58.310 45.455 0.00 0.00 0.00 2.77
4816 5441 1.227468 GAGCAGCATGATCGAGCCA 60.227 57.895 0.00 0.00 43.83 4.75
4832 5457 0.375803 GCCACTTTGTCGTTGAACGT 59.624 50.000 17.86 0.00 43.14 3.99
4858 5483 1.743772 CGATCCACCACTGTTCCATCC 60.744 57.143 0.00 0.00 0.00 3.51
4924 5573 3.835810 ATGGCATCCATGGAGGTTC 57.164 52.632 26.18 18.73 43.39 3.62
4926 5575 0.034186 TGGCATCCATGGAGGTTCAC 60.034 55.000 26.18 14.95 39.02 3.18
4927 5576 0.753111 GGCATCCATGGAGGTTCACC 60.753 60.000 26.18 15.53 39.02 4.02
4928 5577 0.753111 GCATCCATGGAGGTTCACCC 60.753 60.000 26.18 6.01 39.02 4.61
4929 5578 0.625316 CATCCATGGAGGTTCACCCA 59.375 55.000 21.33 0.00 39.02 4.51
4930 5579 1.216175 CATCCATGGAGGTTCACCCAT 59.784 52.381 21.33 0.00 43.51 4.00
4934 5583 0.253044 ATGGAGGTTCACCCATGTCG 59.747 55.000 0.00 0.00 41.32 4.35
4935 5584 1.078426 GGAGGTTCACCCATGTCGG 60.078 63.158 0.00 0.00 36.42 4.79
4936 5585 1.550130 GGAGGTTCACCCATGTCGGA 61.550 60.000 0.00 0.00 36.56 4.55
4937 5586 0.323629 GAGGTTCACCCATGTCGGAA 59.676 55.000 0.00 0.00 36.56 4.30
4938 5587 0.768622 AGGTTCACCCATGTCGGAAA 59.231 50.000 0.00 0.00 36.56 3.13
4939 5588 1.354368 AGGTTCACCCATGTCGGAAAT 59.646 47.619 0.00 0.00 36.56 2.17
4940 5589 1.743394 GGTTCACCCATGTCGGAAATC 59.257 52.381 0.00 0.00 36.56 2.17
4941 5590 1.743394 GTTCACCCATGTCGGAAATCC 59.257 52.381 0.00 0.00 36.56 3.01
4942 5591 1.285280 TCACCCATGTCGGAAATCCT 58.715 50.000 0.00 0.00 36.56 3.24
4943 5592 1.065491 TCACCCATGTCGGAAATCCTG 60.065 52.381 0.00 0.00 36.56 3.86
4944 5593 0.255890 ACCCATGTCGGAAATCCTGG 59.744 55.000 0.00 0.00 36.56 4.45
4945 5594 1.103398 CCCATGTCGGAAATCCTGGC 61.103 60.000 0.00 0.00 36.56 4.85
4946 5595 0.107017 CCATGTCGGAAATCCTGGCT 60.107 55.000 0.00 0.00 36.56 4.75
4947 5596 1.303309 CATGTCGGAAATCCTGGCTC 58.697 55.000 0.00 0.00 0.00 4.70
4948 5597 0.181350 ATGTCGGAAATCCTGGCTCC 59.819 55.000 0.00 0.00 0.00 4.70
4950 5599 2.897350 CGGAAATCCTGGCTCCGC 60.897 66.667 15.54 0.00 44.99 5.54
4961 5610 3.050275 GCTCCGCCACTGGTGAAC 61.050 66.667 10.43 0.00 34.74 3.18
4962 5611 2.358737 CTCCGCCACTGGTGAACC 60.359 66.667 10.43 0.00 34.74 3.62
4965 5614 2.260869 CCGCCACTGGTGAACCTTG 61.261 63.158 10.43 0.00 34.74 3.61
4988 5637 6.568869 TGTGGTTTTATCAAGGAAGTGTTTG 58.431 36.000 0.00 0.00 0.00 2.93
4991 5640 5.983118 GGTTTTATCAAGGAAGTGTTTGGTG 59.017 40.000 0.00 0.00 0.00 4.17
4992 5641 6.406512 GGTTTTATCAAGGAAGTGTTTGGTGT 60.407 38.462 0.00 0.00 0.00 4.16
4994 5643 3.644966 TCAAGGAAGTGTTTGGTGTCT 57.355 42.857 0.00 0.00 0.00 3.41
4996 5645 3.054728 TCAAGGAAGTGTTTGGTGTCTGA 60.055 43.478 0.00 0.00 0.00 3.27
4997 5646 3.864789 AGGAAGTGTTTGGTGTCTGAT 57.135 42.857 0.00 0.00 0.00 2.90
4998 5647 4.974645 AGGAAGTGTTTGGTGTCTGATA 57.025 40.909 0.00 0.00 0.00 2.15
5000 5649 4.102524 AGGAAGTGTTTGGTGTCTGATACA 59.897 41.667 6.87 0.00 35.06 2.29
5001 5650 5.003804 GGAAGTGTTTGGTGTCTGATACAT 58.996 41.667 6.87 0.00 41.10 2.29
5002 5651 5.106555 GGAAGTGTTTGGTGTCTGATACATG 60.107 44.000 6.87 0.00 41.10 3.21
5004 5653 4.997395 AGTGTTTGGTGTCTGATACATGTC 59.003 41.667 0.00 0.00 41.10 3.06
5005 5654 4.997395 GTGTTTGGTGTCTGATACATGTCT 59.003 41.667 0.00 0.00 41.10 3.41
5008 5666 4.206477 TGGTGTCTGATACATGTCTTGG 57.794 45.455 0.00 0.00 41.10 3.61
5106 5764 3.654143 ACCATGCTGGAGCTGGCA 61.654 61.111 13.76 7.84 40.96 4.92
5205 5863 2.671070 CCGGACATCACCAAGGCT 59.329 61.111 0.00 0.00 0.00 4.58
5339 6003 2.353607 CGAGTAGTGATCGCCCGC 60.354 66.667 1.76 0.00 32.81 6.13
5396 6060 0.652592 CGGTGCCGTTTCATCATCTC 59.347 55.000 1.93 0.00 34.35 2.75
5463 6128 1.485066 AGTAACAGCAAGGATACCGGG 59.515 52.381 6.32 0.00 37.17 5.73
5525 6190 3.988517 GACTGTGTAGCTTTTTAGCGTCT 59.011 43.478 0.00 0.00 40.27 4.18
5530 6195 5.176223 TGTGTAGCTTTTTAGCGTCTTGTAC 59.824 40.000 0.00 0.00 40.27 2.90
5553 6218 1.573857 TGGGTGGAGTAGCTAGATGGA 59.426 52.381 0.00 0.00 0.00 3.41
5592 6257 2.120232 CGATCTTGACTATGACCGTGC 58.880 52.381 0.00 0.00 0.00 5.34
5696 6370 4.322953 GGAGGGCACATGTTTGATGAAATT 60.323 41.667 0.00 0.00 0.00 1.82
5701 6375 6.347888 GGGCACATGTTTGATGAAATTCAAAG 60.348 38.462 0.00 0.00 44.06 2.77
5703 6377 7.118680 GGCACATGTTTGATGAAATTCAAAGAT 59.881 33.333 0.00 4.33 45.31 2.40
5704 6378 8.166706 GCACATGTTTGATGAAATTCAAAGATC 58.833 33.333 0.00 0.00 43.66 2.75
5705 6379 9.419297 CACATGTTTGATGAAATTCAAAGATCT 57.581 29.630 0.00 0.00 43.66 2.75
5710 6386 9.007252 GTTTGATGAAATTCAAAGATCTGATCG 57.993 33.333 11.73 0.00 44.06 3.69
5712 6388 5.490139 TGAAATTCAAAGATCTGATCGGC 57.510 39.130 11.73 0.00 0.00 5.54
5721 6397 5.745312 AAGATCTGATCGGCCATACAATA 57.255 39.130 11.73 0.00 0.00 1.90
5776 6456 4.618920 TCCCCTGTTTAAGACTTGTCTC 57.381 45.455 3.58 0.00 0.00 3.36
5806 6532 1.984570 CTCGTGAAGGGCAGGGAGA 60.985 63.158 0.00 0.00 32.62 3.71
5817 6543 0.960364 GCAGGGAGAAAACGGCATGA 60.960 55.000 0.00 0.00 0.00 3.07
5827 6553 4.097892 AGAAAACGGCATGACAACTTTCTT 59.902 37.500 11.80 0.84 29.64 2.52
5831 6557 1.689959 GCATGACAACTTTCTTGCCG 58.310 50.000 0.00 0.00 39.58 5.69
5847 6573 2.166829 TGCCGATGCAAACCTGTAAAT 58.833 42.857 0.00 0.00 46.66 1.40
5848 6574 2.094803 TGCCGATGCAAACCTGTAAATG 60.095 45.455 0.00 0.00 46.66 2.32
5849 6575 2.735126 GCCGATGCAAACCTGTAAATGG 60.735 50.000 0.00 0.00 37.47 3.16
5850 6576 2.752354 CCGATGCAAACCTGTAAATGGA 59.248 45.455 0.00 0.00 0.00 3.41
5851 6577 3.427503 CCGATGCAAACCTGTAAATGGAC 60.428 47.826 0.00 0.00 0.00 4.02
5852 6578 3.727673 CGATGCAAACCTGTAAATGGACG 60.728 47.826 0.00 0.00 0.00 4.79
5853 6579 1.268352 TGCAAACCTGTAAATGGACGC 59.732 47.619 0.00 0.00 0.00 5.19
5854 6580 1.268352 GCAAACCTGTAAATGGACGCA 59.732 47.619 0.00 0.00 0.00 5.24
5855 6581 2.287909 GCAAACCTGTAAATGGACGCAA 60.288 45.455 0.00 0.00 0.00 4.85
5856 6582 3.305110 CAAACCTGTAAATGGACGCAAC 58.695 45.455 0.00 0.00 0.00 4.17
5857 6583 2.264005 ACCTGTAAATGGACGCAACA 57.736 45.000 0.00 0.00 0.00 3.33
5858 6584 1.877443 ACCTGTAAATGGACGCAACAC 59.123 47.619 0.00 0.00 0.00 3.32
5879 6605 1.628340 TGCAACAGCTACCCTACATGT 59.372 47.619 2.69 2.69 0.00 3.21
5882 6608 1.952621 ACAGCTACCCTACATGTGGT 58.047 50.000 9.11 10.92 38.69 4.16
5883 6609 1.555075 ACAGCTACCCTACATGTGGTG 59.445 52.381 16.22 12.35 36.04 4.17
5884 6610 1.555075 CAGCTACCCTACATGTGGTGT 59.445 52.381 16.22 10.03 44.95 4.16
5885 6611 2.027192 CAGCTACCCTACATGTGGTGTT 60.027 50.000 16.22 4.01 42.29 3.32
5886 6612 2.642807 AGCTACCCTACATGTGGTGTTT 59.357 45.455 16.22 1.13 42.29 2.83
5887 6613 3.841845 AGCTACCCTACATGTGGTGTTTA 59.158 43.478 16.22 0.00 42.29 2.01
5888 6614 3.937079 GCTACCCTACATGTGGTGTTTAC 59.063 47.826 16.22 0.00 42.29 2.01
5894 6620 2.400399 ACATGTGGTGTTTACTCGTCG 58.600 47.619 0.00 0.00 38.01 5.12
5903 6629 2.815503 TGTTTACTCGTCGATCACCTGA 59.184 45.455 0.00 0.00 0.00 3.86
5904 6630 3.253921 TGTTTACTCGTCGATCACCTGAA 59.746 43.478 0.00 0.00 0.00 3.02
5911 6637 2.879026 CGTCGATCACCTGAAGGAGATA 59.121 50.000 9.00 0.00 43.91 1.98
5917 6643 4.760530 TCACCTGAAGGAGATATGGTTG 57.239 45.455 2.62 0.00 38.94 3.77
5933 6659 0.663153 GTTGAAGATATGGGTGCGCC 59.337 55.000 8.12 8.12 0.00 6.53
5976 6702 0.036294 GTAGAACCAGACCACCAGCC 60.036 60.000 0.00 0.00 0.00 4.85
5983 6709 0.392193 CAGACCACCAGCCTCACATC 60.392 60.000 0.00 0.00 0.00 3.06
6040 6766 5.337773 CGTTCATGCTGCATCATAATTTACG 59.662 40.000 13.10 1.73 0.00 3.18
6050 6776 5.559991 GCATCATAATTTACGCGGAACATCA 60.560 40.000 12.47 0.00 0.00 3.07
6052 6778 6.612247 TCATAATTTACGCGGAACATCAAT 57.388 33.333 12.47 0.00 0.00 2.57
6053 6779 6.426327 TCATAATTTACGCGGAACATCAATG 58.574 36.000 12.47 7.81 0.00 2.82
6059 6785 2.607635 ACGCGGAACATCAATGACATAC 59.392 45.455 12.47 0.00 0.00 2.39
6060 6786 2.607180 CGCGGAACATCAATGACATACA 59.393 45.455 0.00 0.00 0.00 2.29
6066 6792 7.567571 CGGAACATCAATGACATACATTAGTC 58.432 38.462 0.00 0.00 46.01 2.59
6080 6806 3.938334 ACATTAGTCACACGCATAATGCA 59.062 39.130 0.00 0.00 45.36 3.96
6090 6816 0.825010 GCATAATGCACTCCAGGGGG 60.825 60.000 0.00 0.00 44.26 5.40
6145 6871 4.816126 AGCCATGGTACCAATCTAGAGTA 58.184 43.478 20.76 0.00 0.00 2.59
6147 6873 5.070580 AGCCATGGTACCAATCTAGAGTAAC 59.929 44.000 20.76 0.00 0.00 2.50
6180 6906 5.952347 AAAGAGTACATAAGGGTGTAGGG 57.048 43.478 0.00 0.00 35.40 3.53
6208 6934 1.667724 CATCCAAACGATCACAGGCTC 59.332 52.381 0.00 0.00 0.00 4.70
6209 6935 0.684535 TCCAAACGATCACAGGCTCA 59.315 50.000 0.00 0.00 0.00 4.26
6350 7076 1.300963 GAGCAACATCAGGAGGCCA 59.699 57.895 5.01 0.00 0.00 5.36
6387 7113 3.275848 TCTCCCTGGAGAGAGGAAAAA 57.724 47.619 11.88 0.00 45.26 1.94
6391 7117 2.639839 CCCTGGAGAGAGGAAAAAGTGA 59.360 50.000 0.00 0.00 34.69 3.41
6396 7122 6.102897 TGGAGAGAGGAAAAAGTGAGTAAG 57.897 41.667 0.00 0.00 0.00 2.34
6428 7154 2.805671 CAGTTGCACGAGTGAATTGGTA 59.194 45.455 7.50 0.00 0.00 3.25
6433 7159 5.446143 TGCACGAGTGAATTGGTAAAATT 57.554 34.783 7.50 0.00 0.00 1.82
6445 7171 9.137459 TGAATTGGTAAAATTACTTGGTTGAGA 57.863 29.630 3.55 0.00 34.16 3.27
6446 7172 9.974980 GAATTGGTAAAATTACTTGGTTGAGAA 57.025 29.630 3.55 0.00 34.16 2.87
6447 7173 9.981114 AATTGGTAAAATTACTTGGTTGAGAAG 57.019 29.630 3.55 0.00 34.16 2.85
6448 7174 8.528044 TTGGTAAAATTACTTGGTTGAGAAGT 57.472 30.769 3.55 0.00 37.43 3.01
6451 7177 8.235226 GGTAAAATTACTTGGTTGAGAAGTAGC 58.765 37.037 3.55 0.00 37.25 3.58
6452 7178 6.819397 AAATTACTTGGTTGAGAAGTAGCC 57.181 37.500 0.00 0.00 37.25 3.93
6454 7180 3.127425 ACTTGGTTGAGAAGTAGCCAC 57.873 47.619 0.00 0.00 31.72 5.01
6455 7181 2.706190 ACTTGGTTGAGAAGTAGCCACT 59.294 45.455 0.00 0.00 36.19 4.00
6471 7198 2.812011 GCCACTAGGTGTAAAAGGTGTG 59.188 50.000 0.00 0.00 37.19 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 113 0.759346 AAAGTCTGAGCTTCCACCGT 59.241 50.000 0.00 0.00 0.00 4.83
141 150 1.657556 CTAGCGGGCAGTCTAGCTC 59.342 63.158 0.00 0.00 40.73 4.09
192 207 2.225491 GTGCAGGCTATCTCTCTCGTAG 59.775 54.545 0.00 0.00 0.00 3.51
193 208 2.222886 GTGCAGGCTATCTCTCTCGTA 58.777 52.381 0.00 0.00 0.00 3.43
194 209 1.028905 GTGCAGGCTATCTCTCTCGT 58.971 55.000 0.00 0.00 0.00 4.18
195 210 0.040514 CGTGCAGGCTATCTCTCTCG 60.041 60.000 0.00 0.00 0.00 4.04
196 211 1.028905 ACGTGCAGGCTATCTCTCTC 58.971 55.000 6.26 0.00 0.00 3.20
197 212 1.479709 AACGTGCAGGCTATCTCTCT 58.520 50.000 6.26 0.00 0.00 3.10
198 213 2.197577 GAAACGTGCAGGCTATCTCTC 58.802 52.381 6.26 0.00 0.00 3.20
199 214 1.134670 GGAAACGTGCAGGCTATCTCT 60.135 52.381 6.26 0.00 0.00 3.10
200 215 1.291132 GGAAACGTGCAGGCTATCTC 58.709 55.000 6.26 0.00 0.00 2.75
201 216 0.613260 TGGAAACGTGCAGGCTATCT 59.387 50.000 6.26 0.00 0.00 1.98
228 243 2.202824 GCCACATAGCGGCGTGTA 60.203 61.111 9.37 0.49 40.35 2.90
234 249 0.464036 TTCACCTAGCCACATAGCGG 59.536 55.000 0.00 0.00 38.01 5.52
291 311 0.320683 TATAGCCGCGTCGTAGCCTA 60.321 55.000 4.92 0.00 0.00 3.93
307 327 6.405286 CCCGTTTGAACCAGCAAATTGATATA 60.405 38.462 0.00 0.00 39.65 0.86
310 330 3.554752 CCCGTTTGAACCAGCAAATTGAT 60.555 43.478 0.00 0.00 39.65 2.57
311 331 2.223923 CCCGTTTGAACCAGCAAATTGA 60.224 45.455 0.00 0.00 39.65 2.57
346 366 1.303561 GCATGCCCAGGTTCACTCA 60.304 57.895 6.36 0.00 0.00 3.41
360 380 4.496895 GTCAAGCGTTATAAAGCAAGCATG 59.503 41.667 22.63 13.61 35.80 4.06
362 382 3.500299 TGTCAAGCGTTATAAAGCAAGCA 59.500 39.130 22.63 13.51 35.80 3.91
363 383 3.846335 GTGTCAAGCGTTATAAAGCAAGC 59.154 43.478 22.63 11.52 35.80 4.01
364 384 4.403453 GGTGTCAAGCGTTATAAAGCAAG 58.597 43.478 22.63 14.97 35.80 4.01
365 385 3.120477 CGGTGTCAAGCGTTATAAAGCAA 60.120 43.478 22.63 7.43 42.28 3.91
408 436 6.013898 TGGCCATATGATCCTCAAAACAAAAA 60.014 34.615 0.00 0.00 0.00 1.94
409 437 5.483231 TGGCCATATGATCCTCAAAACAAAA 59.517 36.000 0.00 0.00 0.00 2.44
410 438 5.022122 TGGCCATATGATCCTCAAAACAAA 58.978 37.500 0.00 0.00 0.00 2.83
411 439 4.608269 TGGCCATATGATCCTCAAAACAA 58.392 39.130 0.00 0.00 0.00 2.83
412 440 4.248174 TGGCCATATGATCCTCAAAACA 57.752 40.909 0.00 0.00 0.00 2.83
413 441 5.183904 GGTATGGCCATATGATCCTCAAAAC 59.816 44.000 27.84 12.77 37.17 2.43
414 442 5.163001 TGGTATGGCCATATGATCCTCAAAA 60.163 40.000 27.84 5.95 43.61 2.44
415 443 4.353489 TGGTATGGCCATATGATCCTCAAA 59.647 41.667 27.84 6.29 43.61 2.69
416 444 3.915711 TGGTATGGCCATATGATCCTCAA 59.084 43.478 27.84 4.51 43.61 3.02
417 445 3.530017 TGGTATGGCCATATGATCCTCA 58.470 45.455 27.84 14.09 43.61 3.86
429 457 2.870411 GTTACTCGTCAATGGTATGGCC 59.130 50.000 0.00 0.00 37.90 5.36
430 458 3.527533 TGTTACTCGTCAATGGTATGGC 58.472 45.455 0.00 0.00 0.00 4.40
431 459 4.032445 CGTTGTTACTCGTCAATGGTATGG 59.968 45.833 0.00 0.00 0.00 2.74
432 460 4.491924 GCGTTGTTACTCGTCAATGGTATG 60.492 45.833 0.00 0.00 33.00 2.39
433 461 3.615496 GCGTTGTTACTCGTCAATGGTAT 59.385 43.478 0.00 0.00 33.00 2.73
434 462 2.988493 GCGTTGTTACTCGTCAATGGTA 59.012 45.455 0.00 0.00 33.00 3.25
435 463 1.796459 GCGTTGTTACTCGTCAATGGT 59.204 47.619 0.00 0.00 33.00 3.55
436 464 2.066262 AGCGTTGTTACTCGTCAATGG 58.934 47.619 0.00 0.00 33.00 3.16
437 465 2.475111 ACAGCGTTGTTACTCGTCAATG 59.525 45.455 0.00 0.00 32.28 2.82
527 562 2.059541 GTTGTGCTACGTTCTCACTCC 58.940 52.381 0.00 0.00 0.00 3.85
529 564 2.470821 GTGTTGTGCTACGTTCTCACT 58.529 47.619 0.00 0.00 0.00 3.41
530 565 1.525619 GGTGTTGTGCTACGTTCTCAC 59.474 52.381 0.00 0.00 0.00 3.51
531 566 1.411246 AGGTGTTGTGCTACGTTCTCA 59.589 47.619 0.00 0.00 0.00 3.27
532 567 2.059541 GAGGTGTTGTGCTACGTTCTC 58.940 52.381 0.00 0.00 0.00 2.87
536 571 0.386476 TTCGAGGTGTTGTGCTACGT 59.614 50.000 0.00 0.00 0.00 3.57
537 572 0.782384 GTTCGAGGTGTTGTGCTACG 59.218 55.000 0.00 0.00 0.00 3.51
539 574 0.034337 GGGTTCGAGGTGTTGTGCTA 59.966 55.000 0.00 0.00 0.00 3.49
540 575 1.227853 GGGTTCGAGGTGTTGTGCT 60.228 57.895 0.00 0.00 0.00 4.40
541 576 2.604174 CGGGTTCGAGGTGTTGTGC 61.604 63.158 0.00 0.00 39.00 4.57
542 577 1.219522 GACGGGTTCGAGGTGTTGTG 61.220 60.000 0.00 0.00 40.11 3.33
543 578 1.068585 GACGGGTTCGAGGTGTTGT 59.931 57.895 0.00 0.00 40.11 3.32
544 579 0.531090 TTGACGGGTTCGAGGTGTTG 60.531 55.000 0.00 0.00 40.11 3.33
547 582 0.584876 GTTTTGACGGGTTCGAGGTG 59.415 55.000 0.00 0.00 40.11 4.00
548 583 0.533531 GGTTTTGACGGGTTCGAGGT 60.534 55.000 0.00 0.00 40.11 3.85
549 584 0.533308 TGGTTTTGACGGGTTCGAGG 60.533 55.000 0.00 0.00 40.11 4.63
625 677 3.116531 GTCGTTACGTGCAGGGGC 61.117 66.667 11.67 0.00 41.68 5.80
626 678 2.433664 GGTCGTTACGTGCAGGGG 60.434 66.667 11.67 0.00 0.00 4.79
627 679 2.433664 GGGTCGTTACGTGCAGGG 60.434 66.667 11.67 0.00 0.00 4.45
628 680 2.807895 CGGGTCGTTACGTGCAGG 60.808 66.667 4.24 4.53 0.00 4.85
629 681 2.807895 CCGGGTCGTTACGTGCAG 60.808 66.667 4.24 0.00 0.00 4.41
632 684 2.356075 TTGCCGGGTCGTTACGTG 60.356 61.111 2.18 0.00 0.00 4.49
633 685 2.356194 GTTGCCGGGTCGTTACGT 60.356 61.111 2.18 0.00 0.00 3.57
634 686 3.113979 GGTTGCCGGGTCGTTACG 61.114 66.667 2.18 0.00 0.00 3.18
635 687 2.030862 TGGTTGCCGGGTCGTTAC 59.969 61.111 2.18 0.00 0.00 2.50
636 688 2.344500 CTGGTTGCCGGGTCGTTA 59.656 61.111 2.18 0.00 0.00 3.18
640 692 1.815817 AAAATGCTGGTTGCCGGGTC 61.816 55.000 2.18 0.00 42.00 4.46
656 734 7.619964 ACTCGAGTAAAAACAAAGGAGAAAA 57.380 32.000 18.46 0.00 0.00 2.29
753 859 0.037303 TTCACCGACCGAGTCCTACT 59.963 55.000 0.00 0.00 0.00 2.57
848 960 4.702081 GTCAGTCAGACGCGCCGT 62.702 66.667 5.73 2.55 45.10 5.68
856 968 0.036671 TCTCGCGGTAGTCAGTCAGA 60.037 55.000 6.13 0.00 0.00 3.27
858 970 1.632948 CGTCTCGCGGTAGTCAGTCA 61.633 60.000 6.13 0.00 36.85 3.41
860 972 3.175724 CGTCTCGCGGTAGTCAGT 58.824 61.111 6.13 0.00 36.85 3.41
955 1067 0.035343 GGTTGAGGTTAGGTGGGCTC 60.035 60.000 0.00 0.00 0.00 4.70
998 1113 3.787001 GGTGCGGGAGAAGAGGGG 61.787 72.222 0.00 0.00 0.00 4.79
1041 1171 2.420687 GGATGGACTTGTCCCTGTGATC 60.421 54.545 16.23 11.56 0.00 2.92
1042 1172 1.561542 GGATGGACTTGTCCCTGTGAT 59.438 52.381 16.23 3.64 0.00 3.06
1043 1173 0.984230 GGATGGACTTGTCCCTGTGA 59.016 55.000 16.23 0.00 0.00 3.58
1044 1174 3.558674 GGATGGACTTGTCCCTGTG 57.441 57.895 16.23 0.00 0.00 3.66
1049 1179 2.311688 ATCGCGGGATGGACTTGTCC 62.312 60.000 14.93 12.54 0.00 4.02
1050 1180 0.876342 GATCGCGGGATGGACTTGTC 60.876 60.000 20.80 0.00 31.51 3.18
1051 1181 1.144057 GATCGCGGGATGGACTTGT 59.856 57.895 20.80 0.00 31.51 3.16
1052 1182 1.951130 CGATCGCGGGATGGACTTG 60.951 63.158 20.80 0.00 31.51 3.16
1053 1183 2.417516 CGATCGCGGGATGGACTT 59.582 61.111 20.80 0.00 31.51 3.01
1182 1459 3.066190 CCCAGCACGTACCGGAGA 61.066 66.667 9.46 0.00 0.00 3.71
1206 1483 1.587054 CAAGGAGAAGACGAGGCGT 59.413 57.895 0.00 0.00 45.10 5.68
1249 1526 0.397957 GGGGAGAGGAGGAGGAAGAC 60.398 65.000 0.00 0.00 0.00 3.01
1288 1565 2.357881 CACGCTGCTGCTTGAGGA 60.358 61.111 15.71 0.00 40.37 3.71
1290 1567 4.099170 GCCACGCTGCTGCTTGAG 62.099 66.667 21.25 13.02 40.37 3.02
1542 1825 3.423154 GCCACGTTCTCCTTGCGG 61.423 66.667 0.00 0.00 0.00 5.69
1856 2139 0.394192 GAGATGTGATGATGGGCGGA 59.606 55.000 0.00 0.00 0.00 5.54
1857 2140 0.395686 AGAGATGTGATGATGGGCGG 59.604 55.000 0.00 0.00 0.00 6.13
1858 2141 2.141517 GAAGAGATGTGATGATGGGCG 58.858 52.381 0.00 0.00 0.00 6.13
1859 2142 3.488778 AGAAGAGATGTGATGATGGGC 57.511 47.619 0.00 0.00 0.00 5.36
1860 2143 5.057819 CAGAAGAAGAGATGTGATGATGGG 58.942 45.833 0.00 0.00 0.00 4.00
1861 2144 5.672503 ACAGAAGAAGAGATGTGATGATGG 58.327 41.667 0.00 0.00 0.00 3.51
1862 2145 6.575267 AGACAGAAGAAGAGATGTGATGATG 58.425 40.000 0.00 0.00 0.00 3.07
1863 2146 6.795144 AGACAGAAGAAGAGATGTGATGAT 57.205 37.500 0.00 0.00 0.00 2.45
1864 2147 7.014134 GGATAGACAGAAGAAGAGATGTGATGA 59.986 40.741 0.00 0.00 0.00 2.92
1865 2148 7.014518 AGGATAGACAGAAGAAGAGATGTGATG 59.985 40.741 0.00 0.00 0.00 3.07
1866 2149 7.068702 AGGATAGACAGAAGAAGAGATGTGAT 58.931 38.462 0.00 0.00 0.00 3.06
1867 2150 6.430864 AGGATAGACAGAAGAAGAGATGTGA 58.569 40.000 0.00 0.00 0.00 3.58
1878 2161 5.885912 GGCTCTAGGATAGGATAGACAGAAG 59.114 48.000 0.00 0.00 39.78 2.85
1880 2163 4.080807 CGGCTCTAGGATAGGATAGACAGA 60.081 50.000 0.00 0.00 39.78 3.41
1881 2164 4.196193 CGGCTCTAGGATAGGATAGACAG 58.804 52.174 0.00 0.00 39.78 3.51
1882 2165 3.622704 GCGGCTCTAGGATAGGATAGACA 60.623 52.174 0.00 0.00 39.78 3.41
1884 2167 2.092321 GGCGGCTCTAGGATAGGATAGA 60.092 54.545 0.00 0.00 39.78 1.98
1908 2206 1.434622 GATAGACGAGGACGACGGCA 61.435 60.000 1.63 0.00 41.61 5.69
1946 2244 3.006217 GCAGCATTTCTGTCTTTTTCCCT 59.994 43.478 0.00 0.00 44.66 4.20
1976 2277 5.878406 ACTTCTGTTCAGAAAGAGGAGAA 57.122 39.130 14.76 0.00 34.00 2.87
2121 2422 2.811317 CGAGGTTGCCGAGTGAGC 60.811 66.667 0.00 0.00 0.00 4.26
2166 2467 8.523658 GCTTCTAATAATGGAAAGAAAAGGTGT 58.476 33.333 0.00 0.00 0.00 4.16
2273 2575 2.423446 TAACCAGGCGAAATTACCCC 57.577 50.000 0.00 0.00 0.00 4.95
2355 2661 4.810661 TCGATGCACATGCGCGGA 62.811 61.111 8.83 5.00 45.83 5.54
2489 2804 2.029649 ACGACTAAGCCAAGTAAAGCGA 60.030 45.455 0.00 0.00 0.00 4.93
2559 2887 8.740906 TCACTAATCAATTCCTATCGTAGATCC 58.259 37.037 0.00 0.00 45.12 3.36
2585 2913 9.886132 AGTTTACAAATTACAAGATCGAGGTAT 57.114 29.630 0.00 0.00 0.00 2.73
2675 3008 7.675062 AGTGCATTCCCATACATGTTTAAAAA 58.325 30.769 2.30 0.00 0.00 1.94
2677 3010 6.849085 AGTGCATTCCCATACATGTTTAAA 57.151 33.333 2.30 0.00 0.00 1.52
2678 3011 8.532186 AATAGTGCATTCCCATACATGTTTAA 57.468 30.769 2.30 0.00 0.00 1.52
2803 3141 5.471556 TCCTTAACTTGTACACAATCGGA 57.528 39.130 0.00 0.00 35.02 4.55
2824 3162 7.149112 CGCGTGACTGTAATGACTCTATTATTC 60.149 40.741 0.00 0.00 0.00 1.75
2942 3280 6.158023 AGGGTTTTATGTCTTCGACGATAT 57.842 37.500 6.41 6.41 34.95 1.63
2958 3296 1.365894 ACGGAAAGGGGGAGGGTTTT 61.366 55.000 0.00 0.00 0.00 2.43
3063 3402 5.751990 CGTTATTTCCGTAAGCTCCATAAGT 59.248 40.000 0.00 0.00 0.00 2.24
3086 3425 1.965083 CGTGACTGTAGTTGACTCCG 58.035 55.000 0.00 0.00 0.00 4.63
3087 3426 1.000607 TGCGTGACTGTAGTTGACTCC 60.001 52.381 0.00 0.00 0.00 3.85
3089 3428 2.545952 CCTTGCGTGACTGTAGTTGACT 60.546 50.000 0.00 0.00 0.00 3.41
3128 3467 3.689161 TGTGTTGCTTGGTATAGTGATGC 59.311 43.478 0.00 0.00 0.00 3.91
3130 3469 4.261801 GGTGTGTTGCTTGGTATAGTGAT 58.738 43.478 0.00 0.00 0.00 3.06
3131 3470 3.071747 TGGTGTGTTGCTTGGTATAGTGA 59.928 43.478 0.00 0.00 0.00 3.41
3136 3475 1.133637 TGGTGGTGTGTTGCTTGGTAT 60.134 47.619 0.00 0.00 0.00 2.73
3141 3480 1.653094 CGTGTGGTGGTGTGTTGCTT 61.653 55.000 0.00 0.00 0.00 3.91
3182 3526 5.829924 ACATTATGAAATGGATGGAGTGTCC 59.170 40.000 0.00 0.00 45.72 4.02
3185 3529 6.347969 CGCTACATTATGAAATGGATGGAGTG 60.348 42.308 0.00 0.00 45.72 3.51
3195 3539 8.777865 AGTGTATATGCGCTACATTATGAAAT 57.222 30.769 9.73 0.00 40.38 2.17
3221 3565 5.006746 GCGATAAATGACACTCCTAACCAAG 59.993 44.000 0.00 0.00 0.00 3.61
3227 3571 2.953648 TCCGCGATAAATGACACTCCTA 59.046 45.455 8.23 0.00 0.00 2.94
3237 3581 4.380128 GGGTTTTTGTCTTCCGCGATAAAT 60.380 41.667 8.23 0.00 0.00 1.40
3238 3582 3.058085 GGGTTTTTGTCTTCCGCGATAAA 60.058 43.478 8.23 0.00 0.00 1.40
3245 3589 1.244816 GGGAGGGTTTTTGTCTTCCG 58.755 55.000 0.00 0.00 0.00 4.30
3267 3611 7.856145 ACAAAAATCTATGAGTCTAGGCAAG 57.144 36.000 0.00 0.00 0.00 4.01
3326 3672 6.210078 CCTAGCTAGAGGATAAACGAAGTTG 58.790 44.000 22.70 0.00 45.36 3.16
3328 3674 4.278919 GCCTAGCTAGAGGATAAACGAAGT 59.721 45.833 22.70 0.00 40.80 3.01
3329 3675 4.521256 AGCCTAGCTAGAGGATAAACGAAG 59.479 45.833 22.70 1.54 39.15 3.79
3344 3690 1.064389 CCCCTTAGCAAAAGCCTAGCT 60.064 52.381 0.00 0.00 42.56 3.32
3375 3725 2.099405 CAAACACTTGGTCCACTGGTT 58.901 47.619 0.00 0.00 0.00 3.67
3376 3726 1.684869 CCAAACACTTGGTCCACTGGT 60.685 52.381 0.00 0.00 46.25 4.00
3377 3727 1.032014 CCAAACACTTGGTCCACTGG 58.968 55.000 0.00 0.00 46.25 4.00
3476 3829 2.540973 GCGTCCACTTGTCAAAGTTTCC 60.541 50.000 0.00 0.00 44.47 3.13
3622 3998 6.002704 CCTGCTAATGCTATCATTTCTTCCT 58.997 40.000 0.00 0.00 42.51 3.36
3636 4012 3.623510 GTGACTAACCTTCCTGCTAATGC 59.376 47.826 0.00 0.00 40.20 3.56
3650 4026 0.868406 GTGGCTGCTGTGTGACTAAC 59.132 55.000 0.00 0.00 0.00 2.34
3652 4028 0.249868 GTGTGGCTGCTGTGTGACTA 60.250 55.000 0.00 0.00 0.00 2.59
3667 4043 2.654749 TCTTCATCTAGCCGTGTGTG 57.345 50.000 0.00 0.00 0.00 3.82
3668 4044 2.563179 AGTTCTTCATCTAGCCGTGTGT 59.437 45.455 0.00 0.00 0.00 3.72
3688 4071 1.434622 CGCAGGCTAAGCATCACCAG 61.435 60.000 0.00 0.00 0.00 4.00
3689 4072 1.450134 CGCAGGCTAAGCATCACCA 60.450 57.895 0.00 0.00 0.00 4.17
3690 4073 0.744414 TTCGCAGGCTAAGCATCACC 60.744 55.000 0.00 0.00 0.00 4.02
3706 4090 0.041839 GCCATGTCTATGCGCTTTCG 60.042 55.000 9.73 0.00 39.07 3.46
3719 4103 1.150536 AGGACAAACCGTGCCATGT 59.849 52.632 0.00 0.00 44.74 3.21
3729 4113 1.880819 CTGCATGCCCCAGGACAAAC 61.881 60.000 16.68 0.00 0.00 2.93
3733 4117 2.036256 AACTGCATGCCCCAGGAC 59.964 61.111 16.68 0.00 34.65 3.85
3734 4118 1.866483 ATCAACTGCATGCCCCAGGA 61.866 55.000 16.68 6.92 34.65 3.86
3735 4119 1.380785 ATCAACTGCATGCCCCAGG 60.381 57.895 16.68 0.96 34.65 4.45
3738 4122 0.820891 ATCGATCAACTGCATGCCCC 60.821 55.000 16.68 0.00 0.00 5.80
3739 4123 0.590195 GATCGATCAACTGCATGCCC 59.410 55.000 20.52 0.00 0.00 5.36
3741 4125 1.938577 ACTGATCGATCAACTGCATGC 59.061 47.619 27.09 11.82 36.18 4.06
3742 4126 3.619929 TCAACTGATCGATCAACTGCATG 59.380 43.478 27.09 16.45 36.18 4.06
3743 4127 3.865446 TCAACTGATCGATCAACTGCAT 58.135 40.909 27.09 8.61 36.18 3.96
3745 4129 3.002042 CCATCAACTGATCGATCAACTGC 59.998 47.826 27.09 0.92 36.18 4.40
3746 4130 3.558829 CCCATCAACTGATCGATCAACTG 59.441 47.826 27.09 24.17 36.18 3.16
3748 4132 2.289002 GCCCATCAACTGATCGATCAAC 59.711 50.000 27.09 2.47 36.18 3.18
3749 4133 2.564771 GCCCATCAACTGATCGATCAA 58.435 47.619 27.09 14.16 36.18 2.57
3750 4134 1.538849 CGCCCATCAACTGATCGATCA 60.539 52.381 25.80 25.80 31.21 2.92
3751 4135 1.143305 CGCCCATCAACTGATCGATC 58.857 55.000 18.72 18.72 31.21 3.69
3752 4136 0.465705 ACGCCCATCAACTGATCGAT 59.534 50.000 0.00 0.00 31.21 3.59
3753 4137 1.067060 CTACGCCCATCAACTGATCGA 59.933 52.381 6.35 0.00 31.21 3.59
3755 4139 1.139058 ACCTACGCCCATCAACTGATC 59.861 52.381 0.00 0.00 31.21 2.92
3757 4141 1.754803 CTACCTACGCCCATCAACTGA 59.245 52.381 0.00 0.00 0.00 3.41
3759 4143 0.464452 GCTACCTACGCCCATCAACT 59.536 55.000 0.00 0.00 0.00 3.16
3762 4146 0.679505 GATGCTACCTACGCCCATCA 59.320 55.000 0.00 0.00 34.09 3.07
3763 4147 0.388649 CGATGCTACCTACGCCCATC 60.389 60.000 0.00 0.00 0.00 3.51
3764 4148 1.666011 CGATGCTACCTACGCCCAT 59.334 57.895 0.00 0.00 0.00 4.00
3765 4149 2.495409 CCGATGCTACCTACGCCCA 61.495 63.158 0.00 0.00 0.00 5.36
3766 4150 2.338984 CCGATGCTACCTACGCCC 59.661 66.667 0.00 0.00 0.00 6.13
3768 4152 0.664761 TACACCGATGCTACCTACGC 59.335 55.000 0.00 0.00 0.00 4.42
3769 4153 2.292569 ACATACACCGATGCTACCTACG 59.707 50.000 0.00 0.00 0.00 3.51
3817 4227 3.863424 ACCATTAGCAGTCGTTAACATCG 59.137 43.478 6.39 0.00 0.00 3.84
3823 4233 3.257375 AGTGTCACCATTAGCAGTCGTTA 59.743 43.478 0.00 0.00 0.00 3.18
3827 4237 2.350522 CCAGTGTCACCATTAGCAGTC 58.649 52.381 0.00 0.00 0.00 3.51
3837 4247 2.482721 CGTAAATCAACCCAGTGTCACC 59.517 50.000 0.00 0.00 0.00 4.02
3838 4248 3.395639 TCGTAAATCAACCCAGTGTCAC 58.604 45.455 0.00 0.00 0.00 3.67
3839 4249 3.755112 TCGTAAATCAACCCAGTGTCA 57.245 42.857 0.00 0.00 0.00 3.58
3840 4250 4.693566 TCAATCGTAAATCAACCCAGTGTC 59.306 41.667 0.00 0.00 0.00 3.67
3841 4251 4.647611 TCAATCGTAAATCAACCCAGTGT 58.352 39.130 0.00 0.00 0.00 3.55
3842 4252 5.818136 ATCAATCGTAAATCAACCCAGTG 57.182 39.130 0.00 0.00 0.00 3.66
3843 4253 5.125417 CCAATCAATCGTAAATCAACCCAGT 59.875 40.000 0.00 0.00 0.00 4.00
3844 4254 5.125417 ACCAATCAATCGTAAATCAACCCAG 59.875 40.000 0.00 0.00 0.00 4.45
3845 4255 5.013547 ACCAATCAATCGTAAATCAACCCA 58.986 37.500 0.00 0.00 0.00 4.51
3846 4256 5.339990 CACCAATCAATCGTAAATCAACCC 58.660 41.667 0.00 0.00 0.00 4.11
3847 4257 4.798387 GCACCAATCAATCGTAAATCAACC 59.202 41.667 0.00 0.00 0.00 3.77
3848 4258 5.398169 TGCACCAATCAATCGTAAATCAAC 58.602 37.500 0.00 0.00 0.00 3.18
3849 4259 5.635417 TGCACCAATCAATCGTAAATCAA 57.365 34.783 0.00 0.00 0.00 2.57
3850 4260 5.450274 CCATGCACCAATCAATCGTAAATCA 60.450 40.000 0.00 0.00 0.00 2.57
3851 4261 4.977963 CCATGCACCAATCAATCGTAAATC 59.022 41.667 0.00 0.00 0.00 2.17
3852 4262 4.402155 ACCATGCACCAATCAATCGTAAAT 59.598 37.500 0.00 0.00 0.00 1.40
3853 4263 3.761218 ACCATGCACCAATCAATCGTAAA 59.239 39.130 0.00 0.00 0.00 2.01
3854 4264 3.128415 CACCATGCACCAATCAATCGTAA 59.872 43.478 0.00 0.00 0.00 3.18
3855 4265 2.682352 CACCATGCACCAATCAATCGTA 59.318 45.455 0.00 0.00 0.00 3.43
3856 4266 1.473677 CACCATGCACCAATCAATCGT 59.526 47.619 0.00 0.00 0.00 3.73
3857 4267 1.744522 TCACCATGCACCAATCAATCG 59.255 47.619 0.00 0.00 0.00 3.34
3858 4268 2.492881 TGTCACCATGCACCAATCAATC 59.507 45.455 0.00 0.00 0.00 2.67
3859 4269 2.231964 GTGTCACCATGCACCAATCAAT 59.768 45.455 0.00 0.00 0.00 2.57
3860 4270 1.612950 GTGTCACCATGCACCAATCAA 59.387 47.619 0.00 0.00 0.00 2.57
3861 4271 1.202915 AGTGTCACCATGCACCAATCA 60.203 47.619 0.00 0.00 36.35 2.57
3862 4272 1.200716 CAGTGTCACCATGCACCAATC 59.799 52.381 0.00 0.00 36.35 2.67
3863 4273 1.250328 CAGTGTCACCATGCACCAAT 58.750 50.000 0.00 0.00 36.35 3.16
3864 4274 0.822944 CCAGTGTCACCATGCACCAA 60.823 55.000 0.00 0.00 36.35 3.67
3865 4275 1.228215 CCAGTGTCACCATGCACCA 60.228 57.895 0.00 0.00 36.35 4.17
3866 4276 1.973281 CCCAGTGTCACCATGCACC 60.973 63.158 0.00 0.00 36.35 5.01
3867 4277 0.823356 AACCCAGTGTCACCATGCAC 60.823 55.000 0.00 0.00 35.98 4.57
3868 4278 0.822944 CAACCCAGTGTCACCATGCA 60.823 55.000 0.00 0.00 0.00 3.96
3869 4279 0.537143 TCAACCCAGTGTCACCATGC 60.537 55.000 0.00 0.00 0.00 4.06
3870 4280 2.205022 ATCAACCCAGTGTCACCATG 57.795 50.000 0.00 0.00 0.00 3.66
3927 4337 2.050168 GTCGCCGTACACCGTCAA 60.050 61.111 0.00 0.00 33.66 3.18
4001 4411 1.372838 CTTGTGGCGGTGTGTGTTGA 61.373 55.000 0.00 0.00 0.00 3.18
4006 4416 1.078072 TTGACTTGTGGCGGTGTGT 60.078 52.632 0.00 0.00 0.00 3.72
4007 4417 0.813610 TCTTGACTTGTGGCGGTGTG 60.814 55.000 0.00 0.00 0.00 3.82
4008 4418 0.814010 GTCTTGACTTGTGGCGGTGT 60.814 55.000 0.00 0.00 0.00 4.16
4012 4422 1.800805 ATGAGTCTTGACTTGTGGCG 58.199 50.000 4.67 0.00 0.00 5.69
4047 4467 1.373435 CCACCAGCAAGGGAACGTA 59.627 57.895 0.00 0.00 43.89 3.57
4098 4518 3.052082 CCGTGCTGCTGTTGGGAG 61.052 66.667 0.00 0.00 36.41 4.30
4179 4604 1.131126 CATGGTCGAGCACATGGAAAC 59.869 52.381 21.19 0.00 40.50 2.78
4235 4664 2.560105 CAGCAAAAGGAGAGGGAAAAGG 59.440 50.000 0.00 0.00 0.00 3.11
4236 4665 3.490348 TCAGCAAAAGGAGAGGGAAAAG 58.510 45.455 0.00 0.00 0.00 2.27
4237 4666 3.138283 TCTCAGCAAAAGGAGAGGGAAAA 59.862 43.478 0.00 0.00 35.34 2.29
4241 4670 4.703379 ATATCTCAGCAAAAGGAGAGGG 57.297 45.455 0.00 0.00 42.91 4.30
4253 4682 2.928757 CGGCTCAGCATTATATCTCAGC 59.071 50.000 0.00 0.00 0.00 4.26
4254 4683 4.185467 ACGGCTCAGCATTATATCTCAG 57.815 45.455 0.00 0.00 0.00 3.35
4255 4684 4.309933 CAACGGCTCAGCATTATATCTCA 58.690 43.478 0.00 0.00 0.00 3.27
4257 4686 3.070018 GCAACGGCTCAGCATTATATCT 58.930 45.455 0.00 0.00 36.96 1.98
4272 4701 3.009192 ATTGGCATGGCAGCAACGG 62.009 57.895 22.17 0.00 35.83 4.44
4347 4872 3.106407 GTGAGCACGGACGACTGC 61.106 66.667 0.00 0.00 0.00 4.40
4396 4921 0.548197 TTGGACCACCCCGACCTAAT 60.548 55.000 0.00 0.00 34.81 1.73
4443 4968 1.550524 TGTACTTGAGTAGGCAGGCAG 59.449 52.381 0.00 0.00 0.00 4.85
4478 5008 0.887387 GGTGGTCCAAAACGCTAGCA 60.887 55.000 16.45 0.00 0.00 3.49
4479 5009 1.583495 GGGTGGTCCAAAACGCTAGC 61.583 60.000 4.06 4.06 35.00 3.42
4480 5010 0.036306 AGGGTGGTCCAAAACGCTAG 59.964 55.000 0.00 0.00 37.76 3.42
4481 5011 0.250553 CAGGGTGGTCCAAAACGCTA 60.251 55.000 0.00 0.00 37.47 4.26
4482 5012 1.528309 CAGGGTGGTCCAAAACGCT 60.528 57.895 0.00 0.00 39.89 5.07
4483 5013 3.039134 CAGGGTGGTCCAAAACGC 58.961 61.111 0.00 0.00 38.24 4.84
4484 5014 2.561037 GGCAGGGTGGTCCAAAACG 61.561 63.158 0.00 0.00 38.24 3.60
4508 5114 0.961019 GCAAATGCAAGAGGTCCACA 59.039 50.000 0.00 0.00 41.59 4.17
4540 5146 3.118038 AGAGAGAGACCACACTAGCTAGG 60.118 52.174 24.35 15.22 0.00 3.02
4601 5222 5.720202 TCGTGCAGTTTCATCTACATTAGT 58.280 37.500 0.00 0.00 0.00 2.24
4602 5223 6.470160 GTTCGTGCAGTTTCATCTACATTAG 58.530 40.000 0.00 0.00 0.00 1.73
4672 5293 1.805945 GTGCGTGGTCCAGATCGAC 60.806 63.158 4.64 0.00 0.00 4.20
4763 5388 2.503356 AGGGTGATGGAAAGCTACTCAG 59.497 50.000 0.00 0.00 0.00 3.35
4816 5441 3.062504 GTGGTTACGTTCAACGACAAAGT 59.937 43.478 18.84 0.00 46.05 2.66
4832 5457 1.344065 ACAGTGGTGGATCGTGGTTA 58.656 50.000 0.00 0.00 0.00 2.85
4858 5483 2.448468 CGTGACACGACACTCTTGGTG 61.448 57.143 23.39 0.00 46.05 4.17
4919 5568 0.768622 TTTCCGACATGGGTGAACCT 59.231 50.000 0.00 0.00 41.11 3.50
4920 5569 1.743394 GATTTCCGACATGGGTGAACC 59.257 52.381 0.00 0.00 38.76 3.62
4922 5571 1.633432 AGGATTTCCGACATGGGTGAA 59.367 47.619 0.00 0.00 42.08 3.18
4923 5572 1.065491 CAGGATTTCCGACATGGGTGA 60.065 52.381 0.00 0.00 42.08 4.02
4924 5573 1.382522 CAGGATTTCCGACATGGGTG 58.617 55.000 0.00 0.00 42.08 4.61
4926 5575 1.103398 GCCAGGATTTCCGACATGGG 61.103 60.000 0.00 0.00 42.08 4.00
4927 5576 0.107017 AGCCAGGATTTCCGACATGG 60.107 55.000 0.00 0.00 42.08 3.66
4928 5577 1.303309 GAGCCAGGATTTCCGACATG 58.697 55.000 0.00 0.00 42.08 3.21
4929 5578 0.181350 GGAGCCAGGATTTCCGACAT 59.819 55.000 0.00 0.00 42.08 3.06
4930 5579 1.602237 GGAGCCAGGATTTCCGACA 59.398 57.895 0.00 0.00 42.08 4.35
4931 5580 4.542075 GGAGCCAGGATTTCCGAC 57.458 61.111 0.00 0.00 42.08 4.79
4945 5594 2.358737 GGTTCACCAGTGGCGGAG 60.359 66.667 9.78 0.00 35.64 4.63
4946 5595 2.448582 AAGGTTCACCAGTGGCGGA 61.449 57.895 9.78 4.31 38.89 5.54
4947 5596 2.113139 AAGGTTCACCAGTGGCGG 59.887 61.111 9.78 1.43 38.89 6.13
4948 5597 1.525995 ACAAGGTTCACCAGTGGCG 60.526 57.895 9.78 0.00 38.89 5.69
4949 5598 2.032981 CACAAGGTTCACCAGTGGC 58.967 57.895 9.78 0.00 39.26 5.01
4962 5611 6.391227 ACACTTCCTTGATAAAACCACAAG 57.609 37.500 0.00 0.00 40.12 3.16
4965 5614 5.983118 CCAAACACTTCCTTGATAAAACCAC 59.017 40.000 0.00 0.00 0.00 4.16
4974 5623 3.054728 TCAGACACCAAACACTTCCTTGA 60.055 43.478 0.00 0.00 0.00 3.02
4988 5637 3.935203 CACCAAGACATGTATCAGACACC 59.065 47.826 0.00 0.00 42.17 4.16
4991 5640 3.935203 CACCACCAAGACATGTATCAGAC 59.065 47.826 0.00 0.00 0.00 3.51
4992 5641 3.619733 GCACCACCAAGACATGTATCAGA 60.620 47.826 0.00 0.00 0.00 3.27
4994 5643 2.039613 TGCACCACCAAGACATGTATCA 59.960 45.455 0.00 0.00 0.00 2.15
4996 5645 2.618816 CCTGCACCACCAAGACATGTAT 60.619 50.000 0.00 0.00 0.00 2.29
4997 5646 1.271325 CCTGCACCACCAAGACATGTA 60.271 52.381 0.00 0.00 0.00 2.29
4998 5647 0.538057 CCTGCACCACCAAGACATGT 60.538 55.000 0.00 0.00 0.00 3.21
5000 5649 0.185901 AACCTGCACCACCAAGACAT 59.814 50.000 0.00 0.00 0.00 3.06
5001 5650 0.751277 CAACCTGCACCACCAAGACA 60.751 55.000 0.00 0.00 0.00 3.41
5002 5651 0.465460 TCAACCTGCACCACCAAGAC 60.465 55.000 0.00 0.00 0.00 3.01
5004 5653 1.174712 CCTCAACCTGCACCACCAAG 61.175 60.000 0.00 0.00 0.00 3.61
5005 5654 1.152777 CCTCAACCTGCACCACCAA 60.153 57.895 0.00 0.00 0.00 3.67
5008 5666 1.600916 GACCCTCAACCTGCACCAC 60.601 63.158 0.00 0.00 0.00 4.16
5106 5764 4.579127 GTGTCCTGCACCACCTTT 57.421 55.556 0.00 0.00 42.10 3.11
5190 5848 1.559682 TCCTTAGCCTTGGTGATGTCC 59.440 52.381 0.00 0.00 0.00 4.02
5205 5863 2.359169 CCACCCGAGCAGCTCCTTA 61.359 63.158 17.16 0.00 0.00 2.69
5244 5902 4.473520 ATGAGCGGGAGGCCGTTG 62.474 66.667 0.00 0.00 45.17 4.10
5348 6012 3.330853 GGCGGTGCATCGATCGAC 61.331 66.667 26.37 9.52 0.00 4.20
5349 6013 4.923710 CGGCGGTGCATCGATCGA 62.924 66.667 26.37 21.86 33.06 3.59
5396 6060 6.017934 CCTCAACAAATCCATCCTACATAACG 60.018 42.308 0.00 0.00 0.00 3.18
5463 6128 3.699038 TCCCCGGTTTCATTCATTCATTC 59.301 43.478 0.00 0.00 0.00 2.67
5539 6204 1.403514 GGCGCATCCATCTAGCTACTC 60.404 57.143 10.83 0.00 34.01 2.59
5553 6218 3.446570 GGCTTGCTCTTGGCGCAT 61.447 61.111 10.83 0.00 45.43 4.73
5567 6232 1.032794 TCATAGTCAAGATCGCGGCT 58.967 50.000 6.13 0.45 0.00 5.52
5579 6244 0.108520 TTTCGGGCACGGTCATAGTC 60.109 55.000 9.32 0.00 41.39 2.59
5592 6257 0.793104 GCGAGCGAACAAATTTCGGG 60.793 55.000 8.36 0.00 41.76 5.14
5665 6339 1.705186 ACATGTGCCCTCCTTTGTACT 59.295 47.619 0.00 0.00 0.00 2.73
5696 6370 3.387699 TGTATGGCCGATCAGATCTTTGA 59.612 43.478 8.82 0.00 0.00 2.69
5701 6375 5.724328 TCTTATTGTATGGCCGATCAGATC 58.276 41.667 0.00 0.00 0.00 2.75
5703 6377 4.832823 TCTCTTATTGTATGGCCGATCAGA 59.167 41.667 0.00 0.00 0.00 3.27
5704 6378 4.926238 GTCTCTTATTGTATGGCCGATCAG 59.074 45.833 0.00 0.00 0.00 2.90
5705 6379 4.262463 GGTCTCTTATTGTATGGCCGATCA 60.262 45.833 0.00 0.00 0.00 2.92
5710 6386 3.857157 TGGGTCTCTTATTGTATGGCC 57.143 47.619 0.00 0.00 0.00 5.36
5712 6388 7.445402 CCAGTAAATGGGTCTCTTATTGTATGG 59.555 40.741 0.00 0.00 46.36 2.74
5776 6456 2.408050 CTTCACGAGGACAGGAAGTTG 58.592 52.381 0.00 0.00 33.73 3.16
5806 6532 4.111916 CAAGAAAGTTGTCATGCCGTTTT 58.888 39.130 0.00 0.00 0.00 2.43
5831 6557 3.758300 CGTCCATTTACAGGTTTGCATC 58.242 45.455 0.00 0.00 0.00 3.91
5853 6579 0.593128 GGGTAGCTGTTGCAGTGTTG 59.407 55.000 0.00 0.00 42.74 3.33
5854 6580 0.474184 AGGGTAGCTGTTGCAGTGTT 59.526 50.000 0.00 0.00 42.74 3.32
5855 6581 1.002087 GTAGGGTAGCTGTTGCAGTGT 59.998 52.381 0.00 0.00 42.74 3.55
5856 6582 1.001974 TGTAGGGTAGCTGTTGCAGTG 59.998 52.381 0.00 0.00 42.74 3.66
5857 6583 1.348064 TGTAGGGTAGCTGTTGCAGT 58.652 50.000 0.00 0.00 42.74 4.40
5858 6584 2.283298 CATGTAGGGTAGCTGTTGCAG 58.717 52.381 0.00 0.00 42.74 4.41
5879 6605 2.352030 GGTGATCGACGAGTAAACACCA 60.352 50.000 22.98 4.85 43.59 4.17
5882 6608 2.815503 TCAGGTGATCGACGAGTAAACA 59.184 45.455 3.01 0.00 0.00 2.83
5883 6609 3.482722 TCAGGTGATCGACGAGTAAAC 57.517 47.619 3.01 0.00 0.00 2.01
5884 6610 3.119602 CCTTCAGGTGATCGACGAGTAAA 60.120 47.826 3.01 0.00 0.00 2.01
5885 6611 2.422479 CCTTCAGGTGATCGACGAGTAA 59.578 50.000 3.01 0.00 0.00 2.24
5886 6612 2.014857 CCTTCAGGTGATCGACGAGTA 58.985 52.381 3.01 0.00 0.00 2.59
5887 6613 0.811915 CCTTCAGGTGATCGACGAGT 59.188 55.000 3.01 0.00 0.00 4.18
5888 6614 1.064803 CTCCTTCAGGTGATCGACGAG 59.935 57.143 3.01 0.00 36.34 4.18
5894 6620 5.070981 TCAACCATATCTCCTTCAGGTGATC 59.929 44.000 12.68 0.00 44.56 2.92
5903 6629 6.564152 ACCCATATCTTCAACCATATCTCCTT 59.436 38.462 0.00 0.00 0.00 3.36
5904 6630 6.013032 CACCCATATCTTCAACCATATCTCCT 60.013 42.308 0.00 0.00 0.00 3.69
5911 6637 2.575532 CGCACCCATATCTTCAACCAT 58.424 47.619 0.00 0.00 0.00 3.55
5917 6643 0.947244 CTTGGCGCACCCATATCTTC 59.053 55.000 10.83 0.00 44.89 2.87
5933 6659 3.979495 GCATCTTTGCTTGTCTGAACTTG 59.021 43.478 0.00 0.00 45.77 3.16
5976 6702 8.442632 AATTATTATCACTGTGTGGATGTGAG 57.557 34.615 7.79 0.00 42.81 3.51
6011 6737 7.671495 ATTATGATGCAGCATGAACGTTATA 57.329 32.000 27.03 0.53 39.69 0.98
6017 6743 5.116074 GCGTAAATTATGATGCAGCATGAAC 59.884 40.000 27.03 13.00 39.69 3.18
6040 6766 4.818534 ATGTATGTCATTGATGTTCCGC 57.181 40.909 0.00 0.00 32.08 5.54
6050 6776 5.175127 TGCGTGTGACTAATGTATGTCATT 58.825 37.500 0.00 0.00 46.82 2.57
6052 6778 4.181309 TGCGTGTGACTAATGTATGTCA 57.819 40.909 0.00 0.00 40.39 3.58
6053 6779 6.822073 TTATGCGTGTGACTAATGTATGTC 57.178 37.500 0.00 0.00 0.00 3.06
6090 6816 2.369394 CAGTCACTTATTCTTGCCCCC 58.631 52.381 0.00 0.00 0.00 5.40
6091 6817 2.290960 ACCAGTCACTTATTCTTGCCCC 60.291 50.000 0.00 0.00 0.00 5.80
6092 6818 2.749621 CACCAGTCACTTATTCTTGCCC 59.250 50.000 0.00 0.00 0.00 5.36
6093 6819 2.162408 GCACCAGTCACTTATTCTTGCC 59.838 50.000 0.00 0.00 0.00 4.52
6094 6820 3.077359 AGCACCAGTCACTTATTCTTGC 58.923 45.455 0.00 0.00 0.00 4.01
6097 6823 4.772624 TCTGTAGCACCAGTCACTTATTCT 59.227 41.667 3.00 0.00 34.02 2.40
6105 6831 1.273606 GCTTCTCTGTAGCACCAGTCA 59.726 52.381 3.00 0.00 38.51 3.41
6145 6871 4.391155 TGTACTCTTTTGGCGGTAATGTT 58.609 39.130 0.00 0.00 0.00 2.71
6147 6873 6.238374 CCTTATGTACTCTTTTGGCGGTAATG 60.238 42.308 0.00 0.00 0.00 1.90
6180 6906 2.543848 TGATCGTTTGGATGCTAATCGC 59.456 45.455 0.00 0.00 34.82 4.58
6208 6934 4.645136 TGTAGTTCACTCAGGGCTATACTG 59.355 45.833 0.00 0.00 37.30 2.74
6209 6935 4.868268 TGTAGTTCACTCAGGGCTATACT 58.132 43.478 0.00 0.00 0.00 2.12
6350 7076 4.414846 AGGGAGATCTATGCATCTTTTGGT 59.585 41.667 0.19 0.00 32.94 3.67
6387 7113 7.547370 GCAACTGTTCTAATGATCTTACTCACT 59.453 37.037 0.00 0.00 0.00 3.41
6391 7117 6.311445 CGTGCAACTGTTCTAATGATCTTACT 59.689 38.462 0.00 0.00 31.75 2.24
6396 7122 4.627467 ACTCGTGCAACTGTTCTAATGATC 59.373 41.667 0.00 0.00 31.75 2.92
6407 7133 1.603802 ACCAATTCACTCGTGCAACTG 59.396 47.619 0.00 0.00 31.75 3.16
6428 7154 6.775629 TGGCTACTTCTCAACCAAGTAATTTT 59.224 34.615 0.00 0.00 36.20 1.82
6433 7159 3.901844 AGTGGCTACTTCTCAACCAAGTA 59.098 43.478 0.00 0.00 35.63 2.24
6445 7171 4.596212 ACCTTTTACACCTAGTGGCTACTT 59.404 41.667 8.46 0.00 37.94 2.24
6446 7172 4.020485 CACCTTTTACACCTAGTGGCTACT 60.020 45.833 8.18 8.18 37.94 2.57
6447 7173 4.251268 CACCTTTTACACCTAGTGGCTAC 58.749 47.826 0.00 0.00 37.94 3.58
6448 7174 3.905591 ACACCTTTTACACCTAGTGGCTA 59.094 43.478 0.00 0.00 37.94 3.93
6451 7177 3.408634 CCACACCTTTTACACCTAGTGG 58.591 50.000 0.00 0.00 37.94 4.00
6452 7178 3.181448 ACCCACACCTTTTACACCTAGTG 60.181 47.826 0.00 0.00 39.75 2.74
6454 7180 3.671716 GACCCACACCTTTTACACCTAG 58.328 50.000 0.00 0.00 0.00 3.02
6455 7181 2.037511 CGACCCACACCTTTTACACCTA 59.962 50.000 0.00 0.00 0.00 3.08
6471 7198 7.308408 GCCTATTTTTATATCTCAAACCGACCC 60.308 40.741 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.