Multiple sequence alignment - TraesCS2B01G129300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G129300 chr2B 100.000 3069 0 0 1 3069 96631797 96628729 0.000000e+00 5668
1 TraesCS2B01G129300 chr2B 80.583 618 75 24 18 607 120246954 120246354 4.700000e-118 435
2 TraesCS2B01G129300 chr2B 94.954 218 9 2 2511 2726 96629236 96629019 1.050000e-89 340
3 TraesCS2B01G129300 chr2B 94.954 218 9 2 2562 2779 96629287 96629072 1.050000e-89 340
4 TraesCS2B01G129300 chr2B 96.026 151 6 0 2512 2662 96629184 96629034 2.360000e-61 246
5 TraesCS2B01G129300 chr2B 96.026 151 6 0 2614 2764 96629286 96629136 2.360000e-61 246
6 TraesCS2B01G129300 chr2B 96.000 100 4 0 2512 2611 96629133 96629034 2.450000e-36 163
7 TraesCS2B01G129300 chr2B 96.000 100 4 0 2665 2764 96629286 96629187 2.450000e-36 163
8 TraesCS2B01G129300 chr2B 80.978 184 18 12 434 613 758382924 758382754 2.480000e-26 130
9 TraesCS2B01G129300 chr2D 87.569 1094 76 20 1300 2366 61810321 61809261 0.000000e+00 1212
10 TraesCS2B01G129300 chr2D 94.304 474 18 6 824 1295 61810832 61810366 0.000000e+00 717
11 TraesCS2B01G129300 chr2D 83.696 368 40 11 2712 3068 61808788 61808430 2.280000e-86 329
12 TraesCS2B01G129300 chr2D 80.000 285 38 13 339 615 12358859 12358586 3.120000e-45 193
13 TraesCS2B01G129300 chr2A 87.746 914 67 20 1428 2336 62277873 62277000 0.000000e+00 1026
14 TraesCS2B01G129300 chr2A 94.109 679 28 8 724 1394 62278538 62277864 0.000000e+00 1022
15 TraesCS2B01G129300 chr2A 80.480 333 37 16 2756 3068 62276559 62276235 2.380000e-56 230
16 TraesCS2B01G129300 chr7B 82.071 647 77 23 7 623 579829066 579828429 1.630000e-142 516
17 TraesCS2B01G129300 chr7B 81.804 621 82 22 18 611 564376977 564377593 2.750000e-135 492
18 TraesCS2B01G129300 chr7B 91.667 228 15 3 1024 1251 443859317 443859094 2.300000e-81 313
19 TraesCS2B01G129300 chr6B 82.997 594 70 20 18 607 550784035 550784601 2.730000e-140 508
20 TraesCS2B01G129300 chr4A 80.236 678 116 14 18 681 647184279 647183606 7.640000e-136 494
21 TraesCS2B01G129300 chr4A 76.257 716 98 40 6 669 693139979 693140674 6.390000e-82 315
22 TraesCS2B01G129300 chr6A 79.438 676 116 17 13 676 137385606 137386270 1.000000e-124 457
23 TraesCS2B01G129300 chr1B 81.979 566 68 20 64 613 676547511 676548058 1.680000e-122 449
24 TraesCS2B01G129300 chr4B 78.891 649 105 23 41 681 647733128 647732504 7.920000e-111 411
25 TraesCS2B01G129300 chr3A 79.186 639 93 26 4 617 617924034 617924657 1.020000e-109 407
26 TraesCS2B01G129300 chr1D 81.857 474 66 12 4 464 391236014 391235548 6.210000e-102 381
27 TraesCS2B01G129300 chr7A 91.667 228 15 3 1024 1251 506489078 506489301 2.300000e-81 313
28 TraesCS2B01G129300 chr7A 88.961 154 17 0 1917 2070 506490099 506490252 1.120000e-44 191
29 TraesCS2B01G129300 chr7D 91.228 228 16 3 1024 1251 426752940 426752717 1.070000e-79 307


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G129300 chr2B 96628729 96631797 3068 True 1023.714286 5668 96.280 1 3069 7 chr2B.!!$R3 3068
1 TraesCS2B01G129300 chr2B 120246354 120246954 600 True 435.000000 435 80.583 18 607 1 chr2B.!!$R1 589
2 TraesCS2B01G129300 chr2D 61808430 61810832 2402 True 752.666667 1212 88.523 824 3068 3 chr2D.!!$R2 2244
3 TraesCS2B01G129300 chr2A 62276235 62278538 2303 True 759.333333 1026 87.445 724 3068 3 chr2A.!!$R1 2344
4 TraesCS2B01G129300 chr7B 579828429 579829066 637 True 516.000000 516 82.071 7 623 1 chr7B.!!$R2 616
5 TraesCS2B01G129300 chr7B 564376977 564377593 616 False 492.000000 492 81.804 18 611 1 chr7B.!!$F1 593
6 TraesCS2B01G129300 chr6B 550784035 550784601 566 False 508.000000 508 82.997 18 607 1 chr6B.!!$F1 589
7 TraesCS2B01G129300 chr4A 647183606 647184279 673 True 494.000000 494 80.236 18 681 1 chr4A.!!$R1 663
8 TraesCS2B01G129300 chr4A 693139979 693140674 695 False 315.000000 315 76.257 6 669 1 chr4A.!!$F1 663
9 TraesCS2B01G129300 chr6A 137385606 137386270 664 False 457.000000 457 79.438 13 676 1 chr6A.!!$F1 663
10 TraesCS2B01G129300 chr1B 676547511 676548058 547 False 449.000000 449 81.979 64 613 1 chr1B.!!$F1 549
11 TraesCS2B01G129300 chr4B 647732504 647733128 624 True 411.000000 411 78.891 41 681 1 chr4B.!!$R1 640
12 TraesCS2B01G129300 chr3A 617924034 617924657 623 False 407.000000 407 79.186 4 617 1 chr3A.!!$F1 613
13 TraesCS2B01G129300 chr7A 506489078 506490252 1174 False 252.000000 313 90.314 1024 2070 2 chr7A.!!$F1 1046

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 819 0.037605 AGTTGCTCGTTAACTCCCCG 60.038 55.0 3.71 0.0 33.28 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2382 2817 0.1078 CAGACCAGTGAGCAGGATGG 60.108 60.0 0.0 0.0 38.83 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
169 180 0.461548 TCATGCCTCTCGCGAAAGAT 59.538 50.000 11.91 0.00 42.08 2.40
202 223 7.976734 ACAAAATACATGTTTTCTGTTTCCGAA 59.023 29.630 2.30 0.00 0.00 4.30
248 269 1.968017 ACAACCGTACCTCTCGCGA 60.968 57.895 9.26 9.26 0.00 5.87
370 398 0.318699 GAAAGCAAAACCGTGCCTCC 60.319 55.000 0.00 0.00 46.14 4.30
470 542 1.079503 GTGCCTCTCGCGAGAAAAAT 58.920 50.000 35.84 0.00 42.08 1.82
475 547 4.394920 TGCCTCTCGCGAGAAAAATAAAAT 59.605 37.500 35.84 0.00 42.08 1.82
681 783 1.664649 CTGAGAACGCGCCAAGTGA 60.665 57.895 5.73 0.00 0.00 3.41
682 784 1.621301 CTGAGAACGCGCCAAGTGAG 61.621 60.000 5.73 0.00 0.00 3.51
683 785 2.357517 AGAACGCGCCAAGTGAGG 60.358 61.111 5.73 0.00 0.00 3.86
684 786 2.357034 GAACGCGCCAAGTGAGGA 60.357 61.111 5.73 0.00 0.00 3.71
685 787 2.357517 AACGCGCCAAGTGAGGAG 60.358 61.111 5.73 0.00 0.00 3.69
689 791 4.749310 CGCCAAGTGAGGAGCGCT 62.749 66.667 11.27 11.27 42.31 5.92
690 792 2.817396 GCCAAGTGAGGAGCGCTC 60.817 66.667 29.38 29.38 36.00 5.03
691 793 2.507992 CCAAGTGAGGAGCGCTCG 60.508 66.667 29.81 14.63 36.00 5.03
692 794 2.259818 CAAGTGAGGAGCGCTCGT 59.740 61.111 30.96 30.96 36.00 4.18
693 795 1.373497 CAAGTGAGGAGCGCTCGTT 60.373 57.895 31.01 21.74 36.00 3.85
694 796 0.109272 CAAGTGAGGAGCGCTCGTTA 60.109 55.000 31.01 25.12 36.00 3.18
695 797 0.601558 AAGTGAGGAGCGCTCGTTAA 59.398 50.000 31.01 20.43 36.00 2.01
696 798 0.109226 AGTGAGGAGCGCTCGTTAAC 60.109 55.000 31.01 28.37 29.41 2.01
697 799 0.109226 GTGAGGAGCGCTCGTTAACT 60.109 55.000 31.01 21.61 0.00 2.24
698 800 1.131883 GTGAGGAGCGCTCGTTAACTA 59.868 52.381 31.01 14.10 0.00 2.24
699 801 1.400846 TGAGGAGCGCTCGTTAACTAG 59.599 52.381 31.01 3.24 0.00 2.57
700 802 1.401199 GAGGAGCGCTCGTTAACTAGT 59.599 52.381 31.01 7.68 0.00 2.57
701 803 1.817447 AGGAGCGCTCGTTAACTAGTT 59.183 47.619 29.81 13.68 0.00 2.24
702 804 1.918609 GGAGCGCTCGTTAACTAGTTG 59.081 52.381 29.81 1.62 0.00 3.16
703 805 1.320852 GAGCGCTCGTTAACTAGTTGC 59.679 52.381 23.61 11.18 0.00 4.17
704 806 1.067776 AGCGCTCGTTAACTAGTTGCT 60.068 47.619 18.56 17.34 0.00 3.91
705 807 1.320852 GCGCTCGTTAACTAGTTGCTC 59.679 52.381 18.56 3.86 0.00 4.26
706 808 1.578023 CGCTCGTTAACTAGTTGCTCG 59.422 52.381 18.56 17.50 0.00 5.03
707 809 2.593257 GCTCGTTAACTAGTTGCTCGT 58.407 47.619 18.56 0.00 0.00 4.18
708 810 2.985139 GCTCGTTAACTAGTTGCTCGTT 59.015 45.455 18.56 0.00 0.00 3.85
709 811 4.161333 GCTCGTTAACTAGTTGCTCGTTA 58.839 43.478 18.56 4.75 0.00 3.18
710 812 4.618489 GCTCGTTAACTAGTTGCTCGTTAA 59.382 41.667 18.56 0.00 32.07 2.01
711 813 5.442519 GCTCGTTAACTAGTTGCTCGTTAAC 60.443 44.000 18.56 18.39 43.17 2.01
712 814 5.762045 TCGTTAACTAGTTGCTCGTTAACT 58.238 37.500 18.56 7.96 43.79 2.24
713 815 5.853282 TCGTTAACTAGTTGCTCGTTAACTC 59.147 40.000 18.56 8.27 43.79 3.01
714 816 5.060200 CGTTAACTAGTTGCTCGTTAACTCC 59.940 44.000 18.56 7.81 43.79 3.85
715 817 3.589495 ACTAGTTGCTCGTTAACTCCC 57.411 47.619 3.71 0.00 39.06 4.30
716 818 2.233186 ACTAGTTGCTCGTTAACTCCCC 59.767 50.000 3.71 0.00 39.06 4.81
717 819 0.037605 AGTTGCTCGTTAACTCCCCG 60.038 55.000 3.71 0.00 33.28 5.73
718 820 0.037975 GTTGCTCGTTAACTCCCCGA 60.038 55.000 3.71 0.00 0.00 5.14
719 821 0.680618 TTGCTCGTTAACTCCCCGAA 59.319 50.000 3.71 0.00 0.00 4.30
720 822 0.899720 TGCTCGTTAACTCCCCGAAT 59.100 50.000 3.71 0.00 0.00 3.34
721 823 1.134907 TGCTCGTTAACTCCCCGAATC 60.135 52.381 3.71 0.00 0.00 2.52
722 824 1.136500 GCTCGTTAACTCCCCGAATCT 59.864 52.381 3.71 0.00 0.00 2.40
735 837 0.803768 CGAATCTGCACCTCCTCACG 60.804 60.000 0.00 0.00 0.00 4.35
738 840 1.557099 ATCTGCACCTCCTCACGTTA 58.443 50.000 0.00 0.00 0.00 3.18
753 855 4.475028 TCACGTTAAATGCTCAATTGCTG 58.525 39.130 0.00 0.00 0.00 4.41
763 865 1.952296 CTCAATTGCTGTATGGGCCTC 59.048 52.381 4.53 0.00 0.00 4.70
766 868 0.921896 ATTGCTGTATGGGCCTCAGT 59.078 50.000 19.06 2.27 0.00 3.41
774 876 0.541863 ATGGGCCTCAGTTACCTTCG 59.458 55.000 4.53 0.00 0.00 3.79
778 880 1.275573 GGCCTCAGTTACCTTCGAAGT 59.724 52.381 23.03 13.66 0.00 3.01
781 883 3.243336 CCTCAGTTACCTTCGAAGTTCG 58.757 50.000 23.03 19.23 42.10 3.95
793 895 1.730612 CGAAGTTCGAACCTAAAGCCC 59.269 52.381 24.22 4.59 43.74 5.19
795 897 2.943036 AGTTCGAACCTAAAGCCCAA 57.057 45.000 24.22 0.00 0.00 4.12
798 900 2.882761 GTTCGAACCTAAAGCCCAACTT 59.117 45.455 17.68 0.00 41.70 2.66
799 901 4.067192 GTTCGAACCTAAAGCCCAACTTA 58.933 43.478 17.68 0.00 37.75 2.24
800 902 4.563140 TCGAACCTAAAGCCCAACTTAT 57.437 40.909 0.00 0.00 37.75 1.73
801 903 4.510571 TCGAACCTAAAGCCCAACTTATC 58.489 43.478 0.00 0.00 37.75 1.75
802 904 3.626217 CGAACCTAAAGCCCAACTTATCC 59.374 47.826 0.00 0.00 37.75 2.59
803 905 3.664551 ACCTAAAGCCCAACTTATCCC 57.335 47.619 0.00 0.00 37.75 3.85
804 906 2.092592 ACCTAAAGCCCAACTTATCCCG 60.093 50.000 0.00 0.00 37.75 5.14
806 908 0.331616 AAAGCCCAACTTATCCCGCT 59.668 50.000 0.00 0.00 37.75 5.52
807 909 1.209621 AAGCCCAACTTATCCCGCTA 58.790 50.000 0.00 0.00 36.62 4.26
808 910 1.209621 AGCCCAACTTATCCCGCTAA 58.790 50.000 0.00 0.00 0.00 3.09
817 921 6.094048 CCAACTTATCCCGCTAATATCCAATG 59.906 42.308 0.00 0.00 0.00 2.82
852 956 2.113986 GCCAGCCCAGTCACTTGT 59.886 61.111 0.00 0.00 0.00 3.16
853 957 2.263741 GCCAGCCCAGTCACTTGTG 61.264 63.158 0.00 0.00 0.00 3.33
854 958 1.451504 CCAGCCCAGTCACTTGTGA 59.548 57.895 0.00 0.00 0.00 3.58
916 1020 2.103934 CTCTCTCGCTCGCCCTTG 59.896 66.667 0.00 0.00 0.00 3.61
991 1098 3.532155 CGGCCGAGGAGGAAGAGG 61.532 72.222 24.07 0.00 45.00 3.69
1254 1361 2.287668 CGCCTTCTCCAAGAGGTATACG 60.288 54.545 0.00 0.00 35.89 3.06
1279 1386 2.202932 CCCTTCCACGCTCCATCG 60.203 66.667 0.00 0.00 0.00 3.84
1389 1559 3.690422 TGTCTGTTGTTTCGATTGTTGC 58.310 40.909 0.00 0.00 0.00 4.17
1399 1569 6.027131 TGTTTCGATTGTTGCTGTATATTGC 58.973 36.000 0.00 0.00 0.00 3.56
1407 1636 5.116180 TGTTGCTGTATATTGCTCTGTACC 58.884 41.667 0.00 0.00 0.00 3.34
1451 1684 1.276421 TCTGTAGCTGCAGGAAGAACC 59.724 52.381 28.47 0.00 37.12 3.62
1453 1686 1.630369 TGTAGCTGCAGGAAGAACCAT 59.370 47.619 17.12 0.00 42.04 3.55
1454 1687 2.284190 GTAGCTGCAGGAAGAACCATC 58.716 52.381 17.12 0.00 42.04 3.51
1456 1689 1.065564 AGCTGCAGGAAGAACCATCTC 60.066 52.381 17.12 0.00 42.04 2.75
1466 1699 6.041865 CAGGAAGAACCATCTCTATCATGACT 59.958 42.308 0.00 0.00 42.04 3.41
1562 1816 7.752239 AGCTGAATATTTTTCGATTGTCAACAG 59.248 33.333 0.00 0.00 0.00 3.16
1654 2024 3.436704 TGTGCAGCTTGAGTATTTGTAGC 59.563 43.478 0.00 0.00 0.00 3.58
1672 2042 6.056090 TGTAGCTAACACCATTGGAACATA 57.944 37.500 10.37 0.00 32.16 2.29
1701 2073 5.947443 AGATAACTTGCTTTGTCTGAATGC 58.053 37.500 0.00 0.00 0.00 3.56
1702 2074 3.375782 AACTTGCTTTGTCTGAATGCC 57.624 42.857 0.00 0.00 0.00 4.40
1724 2096 3.953612 CCTAACTTATCATTGCCTTGGCA 59.046 43.478 10.65 10.65 0.00 4.92
1745 2117 5.360999 GGCATTGGAGCTTATCTTTACCTTT 59.639 40.000 0.00 0.00 34.17 3.11
1763 2135 8.528044 TTACCTTTCCTAAACACTGAACATTT 57.472 30.769 0.00 0.00 0.00 2.32
1774 2192 5.003804 ACACTGAACATTTAGGCCAGTTAG 58.996 41.667 5.01 0.00 36.09 2.34
1775 2193 5.003804 CACTGAACATTTAGGCCAGTTAGT 58.996 41.667 5.01 0.00 36.09 2.24
1777 2195 6.653320 CACTGAACATTTAGGCCAGTTAGTTA 59.347 38.462 5.01 0.00 36.09 2.24
1816 2250 7.004086 ACATTGGTTGAAGTGGAAGAAAGATA 58.996 34.615 0.00 0.00 0.00 1.98
1817 2251 7.175641 ACATTGGTTGAAGTGGAAGAAAGATAG 59.824 37.037 0.00 0.00 0.00 2.08
1818 2252 6.433847 TGGTTGAAGTGGAAGAAAGATAGA 57.566 37.500 0.00 0.00 0.00 1.98
1819 2253 6.231211 TGGTTGAAGTGGAAGAAAGATAGAC 58.769 40.000 0.00 0.00 0.00 2.59
1820 2254 5.348997 GGTTGAAGTGGAAGAAAGATAGACG 59.651 44.000 0.00 0.00 0.00 4.18
1821 2255 5.977489 TGAAGTGGAAGAAAGATAGACGA 57.023 39.130 0.00 0.00 0.00 4.20
1822 2256 6.531503 TGAAGTGGAAGAAAGATAGACGAT 57.468 37.500 0.00 0.00 0.00 3.73
1823 2257 6.333416 TGAAGTGGAAGAAAGATAGACGATG 58.667 40.000 0.00 0.00 0.00 3.84
1828 2262 4.509600 GGAAGAAAGATAGACGATGGCTTG 59.490 45.833 0.00 0.00 0.00 4.01
1830 2264 5.091261 AGAAAGATAGACGATGGCTTGTT 57.909 39.130 0.00 0.00 0.00 2.83
1841 2275 4.097892 ACGATGGCTTGTTTTCTTTCTGTT 59.902 37.500 0.00 0.00 0.00 3.16
1869 2303 5.577945 ACAACAATTTGCATGCTATTAGCAC 59.422 36.000 20.17 9.60 44.87 4.40
1871 2305 8.525846 ACAACAATTTGCATGCTATTAGCACTG 61.526 37.037 20.17 18.18 44.87 3.66
1882 2316 4.821805 GCTATTAGCACTGCCCATCTTTTA 59.178 41.667 10.83 0.00 41.89 1.52
2153 2587 5.636903 ATCCACCTATCTTATGTTGTGCT 57.363 39.130 0.00 0.00 0.00 4.40
2155 2589 4.716784 TCCACCTATCTTATGTTGTGCTCT 59.283 41.667 0.00 0.00 0.00 4.09
2166 2600 3.277715 TGTTGTGCTCTGTTGAACATGA 58.722 40.909 0.00 0.00 0.00 3.07
2205 2639 5.376861 AGAATCCTTATATTTTGCCTCCCCT 59.623 40.000 0.00 0.00 0.00 4.79
2206 2640 5.686535 ATCCTTATATTTTGCCTCCCCTT 57.313 39.130 0.00 0.00 0.00 3.95
2215 2649 3.081554 CCTCCCCTTGACTGTGGG 58.918 66.667 0.00 0.00 42.98 4.61
2285 2720 0.541392 TCACCTGAACTGCTGTGTGT 59.459 50.000 10.37 0.00 0.00 3.72
2286 2721 1.065491 TCACCTGAACTGCTGTGTGTT 60.065 47.619 10.37 0.00 0.00 3.32
2288 2723 2.545526 CACCTGAACTGCTGTGTGTTAG 59.454 50.000 0.00 0.00 0.00 2.34
2306 2741 0.846693 AGGGTGGTGCTTTTCACTCT 59.153 50.000 0.00 0.00 44.98 3.24
2336 2771 3.091545 TGGTCAATCTGATTTTGAGCCC 58.908 45.455 16.28 7.04 46.10 5.19
2340 2775 3.765511 TCAATCTGATTTTGAGCCCCTTG 59.234 43.478 0.00 0.00 0.00 3.61
2354 2789 1.490490 CCCCTTGCTCCATTAGTGCTA 59.510 52.381 0.00 0.00 35.94 3.49
2355 2790 2.565841 CCCTTGCTCCATTAGTGCTAC 58.434 52.381 0.00 0.00 35.94 3.58
2360 2795 2.429250 TGCTCCATTAGTGCTACGCTAA 59.571 45.455 3.33 3.33 40.09 3.09
2361 2796 3.069586 TGCTCCATTAGTGCTACGCTAAT 59.930 43.478 7.43 7.43 44.67 1.73
2367 2802 4.713824 TTAGTGCTACGCTAATGTCTGT 57.286 40.909 0.00 0.00 32.47 3.41
2370 2805 2.345641 GTGCTACGCTAATGTCTGTGTG 59.654 50.000 0.00 0.00 0.00 3.82
2371 2806 2.230266 TGCTACGCTAATGTCTGTGTGA 59.770 45.455 0.00 0.00 0.00 3.58
2372 2807 3.250744 GCTACGCTAATGTCTGTGTGAA 58.749 45.455 0.00 0.00 0.00 3.18
2375 2810 3.664107 ACGCTAATGTCTGTGTGAACAT 58.336 40.909 0.00 0.00 0.00 2.71
2378 2813 5.008613 ACGCTAATGTCTGTGTGAACATTTT 59.991 36.000 6.09 0.00 34.95 1.82
2379 2814 5.914635 CGCTAATGTCTGTGTGAACATTTTT 59.085 36.000 6.09 0.00 34.95 1.94
2381 2816 7.269084 CGCTAATGTCTGTGTGAACATTTTTAG 59.731 37.037 6.09 0.49 34.95 1.85
2382 2817 7.061094 GCTAATGTCTGTGTGAACATTTTTAGC 59.939 37.037 6.09 6.04 34.95 3.09
2383 2818 5.181690 TGTCTGTGTGAACATTTTTAGCC 57.818 39.130 0.00 0.00 0.00 3.93
2384 2819 4.642437 TGTCTGTGTGAACATTTTTAGCCA 59.358 37.500 0.00 0.00 0.00 4.75
2386 2821 5.858581 GTCTGTGTGAACATTTTTAGCCATC 59.141 40.000 0.00 0.00 0.00 3.51
2387 2822 5.048083 TCTGTGTGAACATTTTTAGCCATCC 60.048 40.000 0.00 0.00 0.00 3.51
2388 2823 4.832266 TGTGTGAACATTTTTAGCCATCCT 59.168 37.500 0.00 0.00 0.00 3.24
2389 2824 5.163513 GTGTGAACATTTTTAGCCATCCTG 58.836 41.667 0.00 0.00 0.00 3.86
2391 2826 4.082026 GTGAACATTTTTAGCCATCCTGCT 60.082 41.667 0.00 0.00 45.38 4.24
2392 2827 4.158394 TGAACATTTTTAGCCATCCTGCTC 59.842 41.667 0.00 0.00 41.68 4.26
2396 2831 2.408271 TTTAGCCATCCTGCTCACTG 57.592 50.000 0.00 0.00 41.68 3.66
2397 2832 0.543277 TTAGCCATCCTGCTCACTGG 59.457 55.000 0.00 0.00 41.68 4.00
2400 2835 1.908340 GCCATCCTGCTCACTGGTCT 61.908 60.000 0.00 0.00 36.34 3.85
2401 2836 0.107800 CCATCCTGCTCACTGGTCTG 60.108 60.000 0.00 0.00 36.34 3.51
2402 2837 0.107800 CATCCTGCTCACTGGTCTGG 60.108 60.000 0.00 0.00 36.34 3.86
2403 2838 0.252421 ATCCTGCTCACTGGTCTGGA 60.252 55.000 0.00 0.00 36.34 3.86
2405 2840 0.107800 CCTGCTCACTGGTCTGGATG 60.108 60.000 0.00 0.00 0.00 3.51
2409 2859 1.134848 GCTCACTGGTCTGGATGTCTC 60.135 57.143 0.00 0.00 0.00 3.36
2413 2863 0.829333 CTGGTCTGGATGTCTCCTGG 59.171 60.000 0.00 0.00 42.59 4.45
2420 2895 2.104451 CTGGATGTCTCCTGGAATCCTG 59.896 54.545 21.02 17.78 42.59 3.86
2424 2899 1.704628 TGTCTCCTGGAATCCTGCAAA 59.295 47.619 0.00 0.00 0.00 3.68
2425 2900 2.309755 TGTCTCCTGGAATCCTGCAAAT 59.690 45.455 0.00 0.00 0.00 2.32
2426 2901 2.686915 GTCTCCTGGAATCCTGCAAATG 59.313 50.000 0.00 0.00 0.00 2.32
2427 2902 2.029623 CTCCTGGAATCCTGCAAATGG 58.970 52.381 0.00 0.00 0.00 3.16
2428 2903 0.462789 CCTGGAATCCTGCAAATGGC 59.537 55.000 0.00 0.00 45.13 4.40
2440 2915 2.018515 GCAAATGGCATCAAATTGGGG 58.981 47.619 0.00 0.00 43.97 4.96
2442 2917 3.370315 GCAAATGGCATCAAATTGGGGTA 60.370 43.478 0.00 0.00 43.97 3.69
2447 2922 2.629617 GGCATCAAATTGGGGTAGATGG 59.370 50.000 0.00 0.00 37.23 3.51
2449 2924 2.452600 TCAAATTGGGGTAGATGGCC 57.547 50.000 0.00 0.00 0.00 5.36
2452 2927 2.640581 AATTGGGGTAGATGGCCGCC 62.641 60.000 1.04 1.04 38.06 6.13
2463 2938 1.920734 ATGGCCGCCATGTTGGACTA 61.921 55.000 24.52 0.00 43.39 2.59
2464 2939 1.152963 GGCCGCCATGTTGGACTAT 60.153 57.895 3.91 0.00 40.96 2.12
2467 2942 1.602377 GCCGCCATGTTGGACTATAAC 59.398 52.381 4.72 0.00 40.96 1.89
2468 2943 2.912771 CCGCCATGTTGGACTATAACA 58.087 47.619 0.00 0.00 40.96 2.41
2469 2944 3.476552 CCGCCATGTTGGACTATAACAT 58.523 45.455 0.00 0.00 46.54 2.71
2474 2949 5.308825 CCATGTTGGACTATAACATCCTCC 58.691 45.833 0.00 0.00 44.50 4.30
2477 3257 1.968493 TGGACTATAACATCCTCCGCC 59.032 52.381 0.00 0.00 35.86 6.13
2489 3269 0.947244 CCTCCGCCATCTTATGTTGC 59.053 55.000 0.00 0.00 0.00 4.17
2498 3278 4.023707 GCCATCTTATGTTGCGCTCTATTT 60.024 41.667 9.73 0.00 0.00 1.40
2500 3280 6.293407 GCCATCTTATGTTGCGCTCTATTTAA 60.293 38.462 9.73 0.00 0.00 1.52
2509 3289 6.934083 TGTTGCGCTCTATTTAATATGGATGA 59.066 34.615 9.73 0.00 0.00 2.92
2546 3326 9.860898 AGAATTCTTATATTTTGTTGCCTCAAC 57.139 29.630 0.88 2.96 43.78 3.18
2547 3327 9.860898 GAATTCTTATATTTTGTTGCCTCAACT 57.139 29.630 10.52 0.00 43.85 3.16
2555 3335 6.909550 TTTTGTTGCCTCAACTAATATGGT 57.090 33.333 10.52 0.00 43.85 3.55
2556 3336 6.909550 TTTGTTGCCTCAACTAATATGGTT 57.090 33.333 10.52 0.00 43.85 3.67
2557 3337 6.509418 TTGTTGCCTCAACTAATATGGTTC 57.491 37.500 10.52 0.00 43.85 3.62
2558 3338 5.815581 TGTTGCCTCAACTAATATGGTTCT 58.184 37.500 10.52 0.00 43.85 3.01
2559 3339 5.880332 TGTTGCCTCAACTAATATGGTTCTC 59.120 40.000 10.52 0.00 43.85 2.87
2560 3340 4.693283 TGCCTCAACTAATATGGTTCTCG 58.307 43.478 0.00 0.00 0.00 4.04
2561 3341 4.161565 TGCCTCAACTAATATGGTTCTCGT 59.838 41.667 0.00 0.00 0.00 4.18
2562 3342 5.116882 GCCTCAACTAATATGGTTCTCGTT 58.883 41.667 0.00 0.00 0.00 3.85
2563 3343 5.585047 GCCTCAACTAATATGGTTCTCGTTT 59.415 40.000 0.00 0.00 0.00 3.60
2564 3344 6.759827 GCCTCAACTAATATGGTTCTCGTTTA 59.240 38.462 0.00 0.00 0.00 2.01
2565 3345 7.279313 GCCTCAACTAATATGGTTCTCGTTTAA 59.721 37.037 0.00 0.00 0.00 1.52
2566 3346 9.326413 CCTCAACTAATATGGTTCTCGTTTAAT 57.674 33.333 0.00 0.00 0.00 1.40
2577 3357 9.981114 ATGGTTCTCGTTTAATTTGAAGAATTT 57.019 25.926 0.00 0.00 0.00 1.82
2578 3358 9.810545 TGGTTCTCGTTTAATTTGAAGAATTTT 57.189 25.926 0.00 0.00 0.00 1.82
2593 3373 9.921637 TTGAAGAATTTTTATATTTTGTCGCCT 57.078 25.926 0.00 0.00 0.00 5.52
2594 3374 9.567848 TGAAGAATTTTTATATTTTGTCGCCTC 57.432 29.630 0.00 0.00 0.00 4.70
2595 3375 9.567848 GAAGAATTTTTATATTTTGTCGCCTCA 57.432 29.630 0.00 0.00 0.00 3.86
2596 3376 9.921637 AAGAATTTTTATATTTTGTCGCCTCAA 57.078 25.926 0.00 0.00 0.00 3.02
2597 3377 9.353999 AGAATTTTTATATTTTGTCGCCTCAAC 57.646 29.630 0.00 0.00 0.00 3.18
2598 3378 9.353999 GAATTTTTATATTTTGTCGCCTCAACT 57.646 29.630 0.00 0.00 0.00 3.16
2605 3385 5.811399 TTTTGTCGCCTCAACTAATATGG 57.189 39.130 0.00 0.00 0.00 2.74
2606 3386 4.481368 TTGTCGCCTCAACTAATATGGT 57.519 40.909 0.00 0.00 0.00 3.55
2607 3387 4.481368 TGTCGCCTCAACTAATATGGTT 57.519 40.909 0.00 0.00 0.00 3.67
2608 3388 4.439057 TGTCGCCTCAACTAATATGGTTC 58.561 43.478 0.00 0.00 0.00 3.62
2609 3389 4.161565 TGTCGCCTCAACTAATATGGTTCT 59.838 41.667 0.00 0.00 0.00 3.01
2610 3390 4.508124 GTCGCCTCAACTAATATGGTTCTG 59.492 45.833 0.00 0.00 0.00 3.02
2611 3391 3.809832 CGCCTCAACTAATATGGTTCTGG 59.190 47.826 0.00 0.00 0.00 3.86
2612 3392 4.137543 GCCTCAACTAATATGGTTCTGGG 58.862 47.826 9.48 0.00 0.00 4.45
2613 3393 4.385310 GCCTCAACTAATATGGTTCTGGGT 60.385 45.833 9.48 0.00 0.00 4.51
2614 3394 5.755849 CCTCAACTAATATGGTTCTGGGTT 58.244 41.667 0.00 0.00 0.00 4.11
2615 3395 6.634039 GCCTCAACTAATATGGTTCTGGGTTA 60.634 42.308 9.48 0.00 0.00 2.85
2627 3407 7.610580 TGGTTCTGGGTTAATTTGAAGAATT 57.389 32.000 0.00 0.00 0.00 2.17
2651 3431 8.780846 TTCTTATATTTTGTCGCCTCAACTAA 57.219 30.769 0.00 0.00 0.00 2.24
2656 3436 5.811399 TTTTGTCGCCTCAACTAATATGG 57.189 39.130 0.00 0.00 0.00 2.74
2658 3438 4.481368 TGTCGCCTCAACTAATATGGTT 57.519 40.909 0.00 0.00 0.00 3.67
2659 3439 4.439057 TGTCGCCTCAACTAATATGGTTC 58.561 43.478 0.00 0.00 0.00 3.62
2660 3440 4.161565 TGTCGCCTCAACTAATATGGTTCT 59.838 41.667 0.00 0.00 0.00 3.01
2663 3443 4.137543 GCCTCAACTAATATGGTTCTGGG 58.862 47.826 9.48 0.00 0.00 4.45
2664 3444 4.385310 GCCTCAACTAATATGGTTCTGGGT 60.385 45.833 9.48 0.00 0.00 4.51
2665 3445 5.755849 CCTCAACTAATATGGTTCTGGGTT 58.244 41.667 0.00 0.00 0.00 4.11
2666 3446 6.634039 GCCTCAACTAATATGGTTCTGGGTTA 60.634 42.308 9.48 0.00 0.00 2.85
2667 3447 7.343357 CCTCAACTAATATGGTTCTGGGTTAA 58.657 38.462 0.00 0.00 0.00 2.01
2668 3448 7.998964 CCTCAACTAATATGGTTCTGGGTTAAT 59.001 37.037 0.00 0.00 0.00 1.40
2669 3449 9.408648 CTCAACTAATATGGTTCTGGGTTAATT 57.591 33.333 0.00 0.00 0.00 1.40
2675 3455 8.893563 AATATGGTTCTGGGTTAATTTGAAGA 57.106 30.769 0.00 0.00 0.00 2.87
2676 3456 8.893563 ATATGGTTCTGGGTTAATTTGAAGAA 57.106 30.769 0.00 0.00 0.00 2.52
2677 3457 7.797121 ATGGTTCTGGGTTAATTTGAAGAAT 57.203 32.000 0.00 0.00 0.00 2.40
2696 3476 8.995419 GAAGAATTCTTATATTTTGTCGCCTC 57.005 34.615 20.51 0.00 43.23 4.70
2697 3477 8.506168 AAGAATTCTTATATTTTGTCGCCTCA 57.494 30.769 19.17 0.00 33.79 3.86
2698 3478 8.506168 AGAATTCTTATATTTTGTCGCCTCAA 57.494 30.769 0.88 0.00 0.00 3.02
2699 3479 8.398665 AGAATTCTTATATTTTGTCGCCTCAAC 58.601 33.333 0.88 0.00 0.00 3.18
2700 3480 7.865706 ATTCTTATATTTTGTCGCCTCAACT 57.134 32.000 0.00 0.00 0.00 3.16
2701 3481 8.958119 ATTCTTATATTTTGTCGCCTCAACTA 57.042 30.769 0.00 0.00 0.00 2.24
2702 3482 8.780846 TTCTTATATTTTGTCGCCTCAACTAA 57.219 30.769 0.00 0.00 0.00 2.24
2703 3483 8.958119 TCTTATATTTTGTCGCCTCAACTAAT 57.042 30.769 0.00 0.00 0.00 1.73
2707 3487 5.811399 TTTTGTCGCCTCAACTAATATGG 57.189 39.130 0.00 0.00 0.00 2.74
2708 3488 4.481368 TTGTCGCCTCAACTAATATGGT 57.519 40.909 0.00 0.00 0.00 3.55
2709 3489 4.481368 TGTCGCCTCAACTAATATGGTT 57.519 40.909 0.00 0.00 0.00 3.67
2710 3490 4.439057 TGTCGCCTCAACTAATATGGTTC 58.561 43.478 0.00 0.00 0.00 3.62
2711 3491 4.161565 TGTCGCCTCAACTAATATGGTTCT 59.838 41.667 0.00 0.00 0.00 3.01
2712 3492 4.508124 GTCGCCTCAACTAATATGGTTCTG 59.492 45.833 0.00 0.00 0.00 3.02
2713 3493 3.809832 CGCCTCAACTAATATGGTTCTGG 59.190 47.826 0.00 0.00 0.00 3.86
2714 3494 4.683400 CGCCTCAACTAATATGGTTCTGGT 60.683 45.833 0.00 0.00 0.00 4.00
2715 3495 5.193679 GCCTCAACTAATATGGTTCTGGTT 58.806 41.667 0.00 0.00 0.00 3.67
2716 3496 5.652452 GCCTCAACTAATATGGTTCTGGTTT 59.348 40.000 0.00 0.00 0.00 3.27
2717 3497 6.826741 GCCTCAACTAATATGGTTCTGGTTTA 59.173 38.462 0.00 0.00 0.00 2.01
2718 3498 7.338449 GCCTCAACTAATATGGTTCTGGTTTAA 59.662 37.037 0.00 0.00 0.00 1.52
2719 3499 9.408648 CCTCAACTAATATGGTTCTGGTTTAAT 57.591 33.333 0.00 0.00 0.00 1.40
2731 3511 8.147704 TGGTTCTGGTTTAATTTGAAGAATTCC 58.852 33.333 0.65 0.00 46.93 3.01
2732 3512 8.367911 GGTTCTGGTTTAATTTGAAGAATTCCT 58.632 33.333 0.65 0.00 46.93 3.36
2744 3524 9.736023 ATTTGAAGAATTCCTATATTTTGTCGC 57.264 29.630 0.65 0.00 46.93 5.19
2745 3525 7.259290 TGAAGAATTCCTATATTTTGTCGCC 57.741 36.000 0.65 0.00 46.93 5.54
2746 3526 7.054124 TGAAGAATTCCTATATTTTGTCGCCT 58.946 34.615 0.65 0.00 46.93 5.52
2747 3527 7.226720 TGAAGAATTCCTATATTTTGTCGCCTC 59.773 37.037 0.65 0.00 46.93 4.70
2748 3528 6.591935 AGAATTCCTATATTTTGTCGCCTCA 58.408 36.000 0.65 0.00 0.00 3.86
2749 3529 7.054124 AGAATTCCTATATTTTGTCGCCTCAA 58.946 34.615 0.65 0.00 0.00 3.02
2750 3530 6.619801 ATTCCTATATTTTGTCGCCTCAAC 57.380 37.500 0.00 0.00 0.00 3.18
2751 3531 5.353394 TCCTATATTTTGTCGCCTCAACT 57.647 39.130 0.00 0.00 0.00 3.16
2752 3532 6.474140 TCCTATATTTTGTCGCCTCAACTA 57.526 37.500 0.00 0.00 0.00 2.24
2753 3533 6.880484 TCCTATATTTTGTCGCCTCAACTAA 58.120 36.000 0.00 0.00 0.00 2.24
2754 3534 7.506114 TCCTATATTTTGTCGCCTCAACTAAT 58.494 34.615 0.00 0.00 0.00 1.73
2760 3540 4.481368 TGTCGCCTCAACTAATATGGTT 57.519 40.909 0.00 0.00 0.00 3.67
2797 3578 7.056635 TCTGAAGTTTTCTCCTGTCTGATTTT 58.943 34.615 0.00 0.00 0.00 1.82
2808 3589 5.532406 TCCTGTCTGATTTTGAGACCTTTTG 59.468 40.000 0.00 0.00 39.36 2.44
2871 3654 5.720162 TCTCCCATTCTCAAGATCCTGATA 58.280 41.667 0.00 0.00 0.00 2.15
2904 3687 2.607631 AACGTCGACCTTCCAAGAAA 57.392 45.000 10.58 0.00 0.00 2.52
2907 3690 3.064931 ACGTCGACCTTCCAAGAAATTC 58.935 45.455 10.58 0.00 0.00 2.17
2943 3726 5.829391 TGCTGCTATCAAATTGACATACCAT 59.171 36.000 0.00 0.00 0.00 3.55
2991 3791 6.101997 GCTAAGCTTTTATCCAAACAGCATT 58.898 36.000 3.20 0.00 33.71 3.56
2996 3796 8.900983 AGCTTTTATCCAAACAGCATTAAAAA 57.099 26.923 0.00 0.00 33.71 1.94
2997 3797 8.773645 AGCTTTTATCCAAACAGCATTAAAAAC 58.226 29.630 0.00 0.00 33.71 2.43
2998 3798 8.015087 GCTTTTATCCAAACAGCATTAAAAACC 58.985 33.333 0.00 0.00 32.60 3.27
2999 3799 9.271828 CTTTTATCCAAACAGCATTAAAAACCT 57.728 29.630 0.00 0.00 0.00 3.50
3013 3813 7.545615 GCATTAAAAACCTTGAATTGGTCCTAG 59.454 37.037 0.00 0.00 36.69 3.02
3031 3831 4.943705 TCCTAGTTTCCAACATCTCATTGC 59.056 41.667 0.00 0.00 0.00 3.56
3036 3836 5.479375 AGTTTCCAACATCTCATTGCTCATT 59.521 36.000 0.00 0.00 0.00 2.57
3041 3841 5.009710 CCAACATCTCATTGCTCATTATGCT 59.990 40.000 0.00 0.00 0.00 3.79
3042 3842 6.461092 CCAACATCTCATTGCTCATTATGCTT 60.461 38.462 0.00 0.00 0.00 3.91
3045 3845 6.320418 ACATCTCATTGCTCATTATGCTTGAA 59.680 34.615 0.00 0.00 0.00 2.69
3046 3846 6.762702 TCTCATTGCTCATTATGCTTGAAA 57.237 33.333 0.00 0.00 0.00 2.69
3059 3859 7.650834 TTATGCTTGAAAAACATTAACAGGC 57.349 32.000 0.00 0.00 34.91 4.85
3068 3868 9.562583 TGAAAAACATTAACAGGCGATTAATAC 57.437 29.630 8.19 0.00 32.27 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.966215 ACAGTTGTGATTCCGCGG 58.034 55.556 22.12 22.12 0.00 6.46
106 117 0.250234 TGTGCTTTCGCTAGAGGCAT 59.750 50.000 0.00 0.00 41.91 4.40
114 125 2.185004 AGTATGGTTGTGCTTTCGCT 57.815 45.000 0.00 0.00 36.97 4.93
133 144 3.366273 GCATGATTTTGCTTCCGTGAGAA 60.366 43.478 0.00 0.00 39.57 2.87
187 208 3.113322 GTGCCTTTCGGAAACAGAAAAC 58.887 45.455 0.00 0.00 37.18 2.43
193 214 2.302260 TGATTGTGCCTTTCGGAAACA 58.698 42.857 0.00 0.00 0.00 2.83
209 230 2.012673 GCTTTCACGAGAGGCATGATT 58.987 47.619 0.00 0.00 0.00 2.57
213 234 0.035317 TGTGCTTTCACGAGAGGCAT 59.965 50.000 13.32 0.00 46.01 4.40
248 269 1.111277 AAGAGGCACGGTTTTGCTTT 58.889 45.000 0.00 0.00 42.56 3.51
328 356 2.758423 AGAGAGGCACGGTTTTGTTTTT 59.242 40.909 0.00 0.00 0.00 1.94
335 363 0.391597 TTTCGAGAGAGGCACGGTTT 59.608 50.000 0.00 0.00 43.69 3.27
370 398 2.685897 TCTGTTTGTTTTCCTTCCGTGG 59.314 45.455 0.00 0.00 0.00 4.94
403 454 2.726760 CGTGACTCTCGGAAACTGAAAG 59.273 50.000 0.00 0.00 42.29 2.62
432 483 0.165944 CGGTTTTGCTTTCGCGAGAT 59.834 50.000 9.59 0.00 41.60 2.75
613 710 6.466885 TGTTTCCTCCGGATTTTGTTTTTA 57.533 33.333 3.57 0.00 0.00 1.52
623 725 1.765314 CTCTGGATGTTTCCTCCGGAT 59.235 52.381 3.57 0.00 45.07 4.18
681 783 1.461559 ACTAGTTAACGAGCGCTCCT 58.538 50.000 30.66 22.52 0.00 3.69
682 784 1.918609 CAACTAGTTAACGAGCGCTCC 59.081 52.381 30.66 16.60 0.00 4.70
683 785 1.320852 GCAACTAGTTAACGAGCGCTC 59.679 52.381 27.64 27.64 0.00 5.03
684 786 1.067776 AGCAACTAGTTAACGAGCGCT 60.068 47.619 20.45 20.45 0.00 5.92
685 787 1.320852 GAGCAACTAGTTAACGAGCGC 59.679 52.381 14.82 16.38 0.00 5.92
686 788 1.578023 CGAGCAACTAGTTAACGAGCG 59.422 52.381 14.82 8.20 0.00 5.03
687 789 2.593257 ACGAGCAACTAGTTAACGAGC 58.407 47.619 24.29 16.91 0.00 5.03
688 790 6.063776 GTTAACGAGCAACTAGTTAACGAG 57.936 41.667 24.29 13.50 45.10 4.18
692 794 5.473039 GGGAGTTAACGAGCAACTAGTTAA 58.527 41.667 8.04 8.40 38.51 2.01
693 795 4.082026 GGGGAGTTAACGAGCAACTAGTTA 60.082 45.833 8.04 0.00 36.38 2.24
694 796 3.306571 GGGGAGTTAACGAGCAACTAGTT 60.307 47.826 1.12 1.12 36.38 2.24
695 797 2.233186 GGGGAGTTAACGAGCAACTAGT 59.767 50.000 0.00 0.00 36.38 2.57
696 798 2.734492 CGGGGAGTTAACGAGCAACTAG 60.734 54.545 0.00 0.00 36.38 2.57
697 799 1.203052 CGGGGAGTTAACGAGCAACTA 59.797 52.381 0.00 0.00 36.38 2.24
698 800 0.037605 CGGGGAGTTAACGAGCAACT 60.038 55.000 0.00 0.00 38.92 3.16
699 801 0.037975 TCGGGGAGTTAACGAGCAAC 60.038 55.000 0.00 0.00 32.29 4.17
700 802 0.680618 TTCGGGGAGTTAACGAGCAA 59.319 50.000 0.00 0.00 37.95 3.91
701 803 0.899720 ATTCGGGGAGTTAACGAGCA 59.100 50.000 0.00 0.00 37.95 4.26
702 804 1.136500 AGATTCGGGGAGTTAACGAGC 59.864 52.381 0.00 0.00 37.95 5.03
703 805 2.810650 CAGATTCGGGGAGTTAACGAG 58.189 52.381 0.00 0.00 37.95 4.18
704 806 1.134907 GCAGATTCGGGGAGTTAACGA 60.135 52.381 0.00 0.00 34.47 3.85
705 807 1.287425 GCAGATTCGGGGAGTTAACG 58.713 55.000 0.00 0.00 0.00 3.18
706 808 2.007608 GTGCAGATTCGGGGAGTTAAC 58.992 52.381 0.00 0.00 0.00 2.01
707 809 1.065709 GGTGCAGATTCGGGGAGTTAA 60.066 52.381 0.00 0.00 0.00 2.01
708 810 0.539986 GGTGCAGATTCGGGGAGTTA 59.460 55.000 0.00 0.00 0.00 2.24
709 811 1.201429 AGGTGCAGATTCGGGGAGTT 61.201 55.000 0.00 0.00 0.00 3.01
710 812 1.613630 AGGTGCAGATTCGGGGAGT 60.614 57.895 0.00 0.00 0.00 3.85
711 813 1.144936 GAGGTGCAGATTCGGGGAG 59.855 63.158 0.00 0.00 0.00 4.30
712 814 2.367202 GGAGGTGCAGATTCGGGGA 61.367 63.158 0.00 0.00 0.00 4.81
713 815 2.190578 GGAGGTGCAGATTCGGGG 59.809 66.667 0.00 0.00 0.00 5.73
714 816 1.144936 GAGGAGGTGCAGATTCGGG 59.855 63.158 0.00 0.00 0.00 5.14
715 817 0.460987 GTGAGGAGGTGCAGATTCGG 60.461 60.000 0.00 0.00 0.00 4.30
716 818 0.803768 CGTGAGGAGGTGCAGATTCG 60.804 60.000 0.00 0.00 0.00 3.34
717 819 0.247736 ACGTGAGGAGGTGCAGATTC 59.752 55.000 0.00 0.00 0.00 2.52
718 820 0.687354 AACGTGAGGAGGTGCAGATT 59.313 50.000 0.00 0.00 0.00 2.40
719 821 1.557099 TAACGTGAGGAGGTGCAGAT 58.443 50.000 0.00 0.00 0.00 2.90
720 822 1.334160 TTAACGTGAGGAGGTGCAGA 58.666 50.000 0.00 0.00 0.00 4.26
721 823 2.163818 TTTAACGTGAGGAGGTGCAG 57.836 50.000 0.00 0.00 0.00 4.41
722 824 2.422597 CATTTAACGTGAGGAGGTGCA 58.577 47.619 0.00 0.00 0.00 4.57
735 837 5.750067 CCCATACAGCAATTGAGCATTTAAC 59.250 40.000 10.34 0.00 36.85 2.01
738 840 3.431207 GCCCATACAGCAATTGAGCATTT 60.431 43.478 10.34 0.00 36.85 2.32
774 876 2.774687 TGGGCTTTAGGTTCGAACTTC 58.225 47.619 26.32 11.96 0.00 3.01
778 880 2.943036 AGTTGGGCTTTAGGTTCGAA 57.057 45.000 0.00 0.00 0.00 3.71
781 883 3.952323 GGGATAAGTTGGGCTTTAGGTTC 59.048 47.826 0.00 0.00 38.57 3.62
789 891 1.209621 TTAGCGGGATAAGTTGGGCT 58.790 50.000 0.00 0.00 34.69 5.19
790 892 2.271944 ATTAGCGGGATAAGTTGGGC 57.728 50.000 0.00 0.00 0.00 5.36
793 895 6.655003 ACATTGGATATTAGCGGGATAAGTTG 59.345 38.462 0.00 0.00 0.00 3.16
795 897 6.374417 ACATTGGATATTAGCGGGATAAGT 57.626 37.500 0.00 0.00 0.00 2.24
798 900 4.679639 GCGACATTGGATATTAGCGGGATA 60.680 45.833 0.00 0.00 0.00 2.59
799 901 3.861840 CGACATTGGATATTAGCGGGAT 58.138 45.455 0.00 0.00 0.00 3.85
800 902 2.611971 GCGACATTGGATATTAGCGGGA 60.612 50.000 0.00 0.00 0.00 5.14
801 903 1.732259 GCGACATTGGATATTAGCGGG 59.268 52.381 0.00 0.00 0.00 6.13
802 904 1.390123 CGCGACATTGGATATTAGCGG 59.610 52.381 0.00 0.00 42.24 5.52
803 905 1.390123 CCGCGACATTGGATATTAGCG 59.610 52.381 8.23 0.00 45.01 4.26
804 906 2.668457 CTCCGCGACATTGGATATTAGC 59.332 50.000 8.23 0.00 32.83 3.09
806 908 3.305813 GGTCTCCGCGACATTGGATATTA 60.306 47.826 8.23 0.00 44.68 0.98
807 909 2.548067 GGTCTCCGCGACATTGGATATT 60.548 50.000 8.23 0.00 44.68 1.28
808 910 1.000955 GGTCTCCGCGACATTGGATAT 59.999 52.381 8.23 0.00 44.68 1.63
817 921 3.966026 CTCGTTGGGTCTCCGCGAC 62.966 68.421 8.23 0.00 42.07 5.19
852 956 0.394762 GGGCTGCCATTCTCATGTCA 60.395 55.000 22.05 0.00 0.00 3.58
853 957 0.394762 TGGGCTGCCATTCTCATGTC 60.395 55.000 22.05 0.00 0.00 3.06
854 958 0.682209 GTGGGCTGCCATTCTCATGT 60.682 55.000 22.05 0.00 0.00 3.21
916 1020 2.203029 GCAGGCGGCTAGGGTTAC 60.203 66.667 12.74 0.00 40.25 2.50
991 1098 1.880340 CGCGAGCCATCTCACCTTC 60.880 63.158 0.00 0.00 39.30 3.46
1279 1386 0.465460 TCACACACAGGCAAAGGGAC 60.465 55.000 0.00 0.00 0.00 4.46
1389 1559 6.909909 TCATACGGTACAGAGCAATATACAG 58.090 40.000 0.00 0.00 0.00 2.74
1399 1569 5.394802 GCATGTATCTCATACGGTACAGAG 58.605 45.833 0.00 11.31 38.59 3.35
1407 1636 3.995199 ACTTGGGCATGTATCTCATACG 58.005 45.455 0.00 0.00 38.59 3.06
1451 1684 4.502171 ACGCTCAGTCATGATAGAGATG 57.498 45.455 23.68 18.16 34.12 2.90
1453 1686 4.203226 AGAACGCTCAGTCATGATAGAGA 58.797 43.478 23.68 9.42 34.12 3.10
1454 1687 4.566545 AGAACGCTCAGTCATGATAGAG 57.433 45.455 18.09 18.09 34.12 2.43
1456 1689 4.023279 AGCTAGAACGCTCAGTCATGATAG 60.023 45.833 0.00 0.00 34.57 2.08
1466 1699 2.080286 GGTGAAAGCTAGAACGCTCA 57.920 50.000 0.00 0.00 39.86 4.26
1654 2024 6.904498 TCGTTTTATGTTCCAATGGTGTTAG 58.096 36.000 0.00 0.00 0.00 2.34
1672 2042 6.260050 TCAGACAAAGCAAGTTATCTCGTTTT 59.740 34.615 0.00 0.00 0.00 2.43
1701 2073 3.319122 GCCAAGGCAATGATAAGTTAGGG 59.681 47.826 6.14 0.00 41.49 3.53
1702 2074 4.574599 GCCAAGGCAATGATAAGTTAGG 57.425 45.455 6.14 0.00 41.49 2.69
1724 2096 6.974795 AGGAAAGGTAAAGATAAGCTCCAAT 58.025 36.000 0.00 0.00 0.00 3.16
1789 2207 5.514274 TTCTTCCACTTCAACCAATGTTC 57.486 39.130 0.00 0.00 30.42 3.18
1816 2250 4.023707 CAGAAAGAAAACAAGCCATCGTCT 60.024 41.667 0.00 0.00 0.00 4.18
1817 2251 4.222114 CAGAAAGAAAACAAGCCATCGTC 58.778 43.478 0.00 0.00 0.00 4.20
1818 2252 3.632145 ACAGAAAGAAAACAAGCCATCGT 59.368 39.130 0.00 0.00 0.00 3.73
1819 2253 4.228912 ACAGAAAGAAAACAAGCCATCG 57.771 40.909 0.00 0.00 0.00 3.84
1820 2254 5.812127 ACAAACAGAAAGAAAACAAGCCATC 59.188 36.000 0.00 0.00 0.00 3.51
1821 2255 5.733676 ACAAACAGAAAGAAAACAAGCCAT 58.266 33.333 0.00 0.00 0.00 4.40
1822 2256 5.146010 ACAAACAGAAAGAAAACAAGCCA 57.854 34.783 0.00 0.00 0.00 4.75
1823 2257 6.096695 TGTACAAACAGAAAGAAAACAAGCC 58.903 36.000 0.00 0.00 0.00 4.35
1830 2264 8.439286 GCAAATTGTTGTACAAACAGAAAGAAA 58.561 29.630 10.51 0.00 41.96 2.52
1841 2275 7.275341 GCTAATAGCATGCAAATTGTTGTACAA 59.725 33.333 21.98 3.59 40.96 2.41
1869 2303 4.411256 AATGGCAATAAAAGATGGGCAG 57.589 40.909 0.00 0.00 37.46 4.85
1871 2305 4.751600 GCTAAATGGCAATAAAAGATGGGC 59.248 41.667 0.00 0.00 0.00 5.36
1882 2316 5.834742 TGATGTGATTAGGCTAAATGGCAAT 59.165 36.000 11.59 1.12 44.55 3.56
2153 2587 9.258826 CAAATTAAACCATTCATGTTCAACAGA 57.741 29.630 0.00 0.00 0.00 3.41
2155 2589 9.605275 TTCAAATTAAACCATTCATGTTCAACA 57.395 25.926 0.00 0.00 0.00 3.33
2198 2632 3.081554 CCCACAGTCAAGGGGAGG 58.918 66.667 0.00 0.00 45.08 4.30
2261 2696 2.684881 CACAGCAGTTCAGGTGAAAACT 59.315 45.455 0.00 0.00 40.11 2.66
2306 2741 8.256605 TCAAAATCAGATTGACCAAAACTTCAA 58.743 29.630 0.00 0.00 32.10 2.69
2336 2771 2.205074 CGTAGCACTAATGGAGCAAGG 58.795 52.381 0.00 0.00 0.00 3.61
2354 2789 3.106242 TGTTCACACAGACATTAGCGT 57.894 42.857 0.00 0.00 0.00 5.07
2355 2790 4.668576 AATGTTCACACAGACATTAGCG 57.331 40.909 0.27 0.00 35.94 4.26
2360 2795 5.301551 TGGCTAAAAATGTTCACACAGACAT 59.698 36.000 0.00 0.00 35.94 3.06
2361 2796 4.642437 TGGCTAAAAATGTTCACACAGACA 59.358 37.500 0.00 0.00 35.94 3.41
2362 2797 5.181690 TGGCTAAAAATGTTCACACAGAC 57.818 39.130 0.00 0.00 35.94 3.51
2363 2798 5.048083 GGATGGCTAAAAATGTTCACACAGA 60.048 40.000 0.00 0.00 35.94 3.41
2364 2799 5.047802 AGGATGGCTAAAAATGTTCACACAG 60.048 40.000 0.00 0.00 35.94 3.66
2365 2800 4.832266 AGGATGGCTAAAAATGTTCACACA 59.168 37.500 0.00 0.00 37.31 3.72
2366 2801 5.163513 CAGGATGGCTAAAAATGTTCACAC 58.836 41.667 0.00 0.00 0.00 3.82
2367 2802 4.321899 GCAGGATGGCTAAAAATGTTCACA 60.322 41.667 0.00 0.00 35.86 3.58
2370 2805 4.158394 TGAGCAGGATGGCTAAAAATGTTC 59.842 41.667 0.00 0.00 45.99 3.18
2371 2806 4.082026 GTGAGCAGGATGGCTAAAAATGTT 60.082 41.667 0.00 0.00 45.99 2.71
2372 2807 3.445096 GTGAGCAGGATGGCTAAAAATGT 59.555 43.478 0.00 0.00 45.99 2.71
2375 2810 3.084039 CAGTGAGCAGGATGGCTAAAAA 58.916 45.455 0.00 0.00 45.99 1.94
2378 2813 0.543277 CCAGTGAGCAGGATGGCTAA 59.457 55.000 0.00 0.00 45.99 3.09
2379 2814 0.618680 ACCAGTGAGCAGGATGGCTA 60.619 55.000 0.00 0.00 45.99 3.93
2381 2816 1.451028 GACCAGTGAGCAGGATGGC 60.451 63.158 0.00 0.00 36.21 4.40
2382 2817 0.107800 CAGACCAGTGAGCAGGATGG 60.108 60.000 0.00 0.00 38.83 3.51
2383 2818 0.107800 CCAGACCAGTGAGCAGGATG 60.108 60.000 0.00 0.00 40.87 3.51
2384 2819 0.252421 TCCAGACCAGTGAGCAGGAT 60.252 55.000 0.00 0.00 0.00 3.24
2386 2821 0.107800 CATCCAGACCAGTGAGCAGG 60.108 60.000 0.00 0.00 0.00 4.85
2387 2822 0.612229 ACATCCAGACCAGTGAGCAG 59.388 55.000 0.00 0.00 0.00 4.24
2388 2823 0.610174 GACATCCAGACCAGTGAGCA 59.390 55.000 0.00 0.00 0.00 4.26
2389 2824 0.901124 AGACATCCAGACCAGTGAGC 59.099 55.000 0.00 0.00 0.00 4.26
2391 2826 1.561643 GGAGACATCCAGACCAGTGA 58.438 55.000 0.00 0.00 45.87 3.41
2402 2837 1.487976 TGCAGGATTCCAGGAGACATC 59.512 52.381 5.29 0.00 0.00 3.06
2403 2838 1.588239 TGCAGGATTCCAGGAGACAT 58.412 50.000 5.29 0.00 0.00 3.06
2405 2840 2.496899 TTTGCAGGATTCCAGGAGAC 57.503 50.000 5.29 0.00 0.00 3.36
2409 2859 0.462789 GCCATTTGCAGGATTCCAGG 59.537 55.000 5.29 0.00 40.77 4.45
2420 2895 2.018515 CCCCAATTTGATGCCATTTGC 58.981 47.619 0.00 0.00 41.77 3.68
2424 2899 3.686227 TCTACCCCAATTTGATGCCAT 57.314 42.857 0.00 0.00 0.00 4.40
2425 2900 3.298619 CATCTACCCCAATTTGATGCCA 58.701 45.455 0.00 0.00 0.00 4.92
2426 2901 2.629617 CCATCTACCCCAATTTGATGCC 59.370 50.000 0.00 0.00 34.79 4.40
2427 2902 2.036346 GCCATCTACCCCAATTTGATGC 59.964 50.000 0.00 0.00 34.79 3.91
2428 2903 2.629617 GGCCATCTACCCCAATTTGATG 59.370 50.000 0.00 0.00 35.59 3.07
2429 2904 2.752829 CGGCCATCTACCCCAATTTGAT 60.753 50.000 2.24 0.00 0.00 2.57
2430 2905 1.409521 CGGCCATCTACCCCAATTTGA 60.410 52.381 2.24 0.00 0.00 2.69
2431 2906 1.032014 CGGCCATCTACCCCAATTTG 58.968 55.000 2.24 0.00 0.00 2.32
2432 2907 0.755327 GCGGCCATCTACCCCAATTT 60.755 55.000 2.24 0.00 0.00 1.82
2433 2908 1.152756 GCGGCCATCTACCCCAATT 60.153 57.895 2.24 0.00 0.00 2.32
2434 2909 2.515901 GCGGCCATCTACCCCAAT 59.484 61.111 2.24 0.00 0.00 3.16
2435 2910 3.804329 GGCGGCCATCTACCCCAA 61.804 66.667 15.62 0.00 0.00 4.12
2437 2912 3.570212 ATGGCGGCCATCTACCCC 61.570 66.667 28.37 0.00 40.74 4.95
2438 2913 2.281761 CATGGCGGCCATCTACCC 60.282 66.667 30.92 0.00 43.15 3.69
2439 2914 1.152963 AACATGGCGGCCATCTACC 60.153 57.895 30.92 0.00 43.15 3.18
2440 2915 1.447317 CCAACATGGCGGCCATCTAC 61.447 60.000 30.92 0.00 43.15 2.59
2442 2917 2.440796 CCAACATGGCGGCCATCT 60.441 61.111 30.92 18.06 43.15 2.90
2447 2922 1.602377 GTTATAGTCCAACATGGCGGC 59.398 52.381 0.00 0.00 37.47 6.53
2449 2924 3.498397 GGATGTTATAGTCCAACATGGCG 59.502 47.826 5.49 0.00 44.55 5.69
2452 2927 4.991056 CGGAGGATGTTATAGTCCAACATG 59.009 45.833 5.49 0.00 44.55 3.21
2463 2938 4.287067 ACATAAGATGGCGGAGGATGTTAT 59.713 41.667 0.00 0.00 33.60 1.89
2464 2939 3.646162 ACATAAGATGGCGGAGGATGTTA 59.354 43.478 0.00 0.00 33.60 2.41
2467 2942 2.810274 CAACATAAGATGGCGGAGGATG 59.190 50.000 0.00 0.00 33.60 3.51
2468 2943 2.811873 GCAACATAAGATGGCGGAGGAT 60.812 50.000 0.00 0.00 33.60 3.24
2469 2944 1.475034 GCAACATAAGATGGCGGAGGA 60.475 52.381 0.00 0.00 33.60 3.71
2520 3300 9.860898 GTTGAGGCAACAAAATATAAGAATTCT 57.139 29.630 0.88 0.88 43.09 2.40
2521 3301 9.860898 AGTTGAGGCAACAAAATATAAGAATTC 57.139 29.630 12.25 0.00 45.66 2.17
2529 3309 9.200817 ACCATATTAGTTGAGGCAACAAAATAT 57.799 29.630 12.25 14.95 45.66 1.28
2530 3310 8.588290 ACCATATTAGTTGAGGCAACAAAATA 57.412 30.769 12.25 13.71 45.66 1.40
2531 3311 7.480760 ACCATATTAGTTGAGGCAACAAAAT 57.519 32.000 12.25 12.33 45.66 1.82
2532 3312 6.909550 ACCATATTAGTTGAGGCAACAAAA 57.090 33.333 12.25 6.77 45.66 2.44
2533 3313 6.719370 AGAACCATATTAGTTGAGGCAACAAA 59.281 34.615 12.25 0.00 45.66 2.83
2534 3314 6.245408 AGAACCATATTAGTTGAGGCAACAA 58.755 36.000 12.25 5.63 45.66 2.83
2535 3315 5.815581 AGAACCATATTAGTTGAGGCAACA 58.184 37.500 12.25 0.00 45.66 3.33
2536 3316 5.006746 CGAGAACCATATTAGTTGAGGCAAC 59.993 44.000 2.22 2.22 43.83 4.17
2537 3317 5.116180 CGAGAACCATATTAGTTGAGGCAA 58.884 41.667 0.00 0.00 0.00 4.52
2538 3318 4.161565 ACGAGAACCATATTAGTTGAGGCA 59.838 41.667 0.00 0.00 0.00 4.75
2539 3319 4.694339 ACGAGAACCATATTAGTTGAGGC 58.306 43.478 0.00 0.00 0.00 4.70
2540 3320 8.712285 TTAAACGAGAACCATATTAGTTGAGG 57.288 34.615 0.00 0.00 0.00 3.86
2551 3331 9.981114 AAATTCTTCAAATTAAACGAGAACCAT 57.019 25.926 0.00 0.00 0.00 3.55
2552 3332 9.810545 AAAATTCTTCAAATTAAACGAGAACCA 57.189 25.926 0.00 0.00 0.00 3.67
2567 3347 9.921637 AGGCGACAAAATATAAAAATTCTTCAA 57.078 25.926 0.00 0.00 0.00 2.69
2568 3348 9.567848 GAGGCGACAAAATATAAAAATTCTTCA 57.432 29.630 0.00 0.00 0.00 3.02
2569 3349 9.567848 TGAGGCGACAAAATATAAAAATTCTTC 57.432 29.630 0.00 0.00 0.00 2.87
2570 3350 9.921637 TTGAGGCGACAAAATATAAAAATTCTT 57.078 25.926 0.00 0.00 0.00 2.52
2571 3351 9.353999 GTTGAGGCGACAAAATATAAAAATTCT 57.646 29.630 0.00 0.00 0.00 2.40
2572 3352 9.353999 AGTTGAGGCGACAAAATATAAAAATTC 57.646 29.630 0.00 0.00 0.00 2.17
2579 3359 9.214957 CCATATTAGTTGAGGCGACAAAATATA 57.785 33.333 0.00 7.45 29.66 0.86
2580 3360 7.719633 ACCATATTAGTTGAGGCGACAAAATAT 59.280 33.333 0.00 6.64 30.23 1.28
2581 3361 7.051623 ACCATATTAGTTGAGGCGACAAAATA 58.948 34.615 0.00 5.01 0.00 1.40
2582 3362 5.885912 ACCATATTAGTTGAGGCGACAAAAT 59.114 36.000 0.00 0.00 0.00 1.82
2583 3363 5.250200 ACCATATTAGTTGAGGCGACAAAA 58.750 37.500 0.00 0.00 0.00 2.44
2584 3364 4.839121 ACCATATTAGTTGAGGCGACAAA 58.161 39.130 0.00 0.00 0.00 2.83
2585 3365 4.481368 ACCATATTAGTTGAGGCGACAA 57.519 40.909 0.00 0.00 0.00 3.18
2586 3366 4.161565 AGAACCATATTAGTTGAGGCGACA 59.838 41.667 0.00 0.00 0.00 4.35
2587 3367 4.508124 CAGAACCATATTAGTTGAGGCGAC 59.492 45.833 0.00 0.00 0.00 5.19
2588 3368 4.442893 CCAGAACCATATTAGTTGAGGCGA 60.443 45.833 0.00 0.00 0.00 5.54
2589 3369 3.809832 CCAGAACCATATTAGTTGAGGCG 59.190 47.826 0.00 0.00 0.00 5.52
2590 3370 4.137543 CCCAGAACCATATTAGTTGAGGC 58.862 47.826 0.00 0.00 0.00 4.70
2591 3371 5.373812 ACCCAGAACCATATTAGTTGAGG 57.626 43.478 0.00 0.00 0.00 3.86
2592 3372 8.980481 ATTAACCCAGAACCATATTAGTTGAG 57.020 34.615 0.00 0.00 0.00 3.02
2593 3373 9.762381 AAATTAACCCAGAACCATATTAGTTGA 57.238 29.630 0.00 0.00 0.00 3.18
2594 3374 9.801873 CAAATTAACCCAGAACCATATTAGTTG 57.198 33.333 0.00 0.00 0.00 3.16
2595 3375 9.762381 TCAAATTAACCCAGAACCATATTAGTT 57.238 29.630 0.00 0.00 0.00 2.24
2596 3376 9.762381 TTCAAATTAACCCAGAACCATATTAGT 57.238 29.630 0.00 0.00 0.00 2.24
2598 3378 9.983024 TCTTCAAATTAACCCAGAACCATATTA 57.017 29.630 0.00 0.00 0.00 0.98
2599 3379 8.893563 TCTTCAAATTAACCCAGAACCATATT 57.106 30.769 0.00 0.00 0.00 1.28
2600 3380 8.893563 TTCTTCAAATTAACCCAGAACCATAT 57.106 30.769 0.00 0.00 0.00 1.78
2601 3381 8.893563 ATTCTTCAAATTAACCCAGAACCATA 57.106 30.769 0.00 0.00 0.00 2.74
2602 3382 7.797121 ATTCTTCAAATTAACCCAGAACCAT 57.203 32.000 0.00 0.00 0.00 3.55
2603 3383 7.508977 AGAATTCTTCAAATTAACCCAGAACCA 59.491 33.333 0.88 0.00 0.00 3.67
2604 3384 7.896811 AGAATTCTTCAAATTAACCCAGAACC 58.103 34.615 0.88 0.00 0.00 3.62
2627 3407 8.958119 ATTAGTTGAGGCGACAAAATATAAGA 57.042 30.769 0.00 0.00 0.00 2.10
2651 3431 8.893563 TTCTTCAAATTAACCCAGAACCATAT 57.106 30.769 0.00 0.00 0.00 1.78
2653 3433 7.797121 ATTCTTCAAATTAACCCAGAACCAT 57.203 32.000 0.00 0.00 0.00 3.55
2655 3435 7.896811 AGAATTCTTCAAATTAACCCAGAACC 58.103 34.615 0.88 0.00 0.00 3.62
2668 3448 9.567848 GGCGACAAAATATAAGAATTCTTCAAA 57.432 29.630 23.70 11.11 37.40 2.69
2669 3449 8.956426 AGGCGACAAAATATAAGAATTCTTCAA 58.044 29.630 23.70 13.51 37.40 2.69
2674 3454 8.398665 AGTTGAGGCGACAAAATATAAGAATTC 58.601 33.333 0.00 0.00 0.00 2.17
2675 3455 8.281212 AGTTGAGGCGACAAAATATAAGAATT 57.719 30.769 0.00 0.00 0.00 2.17
2676 3456 7.865706 AGTTGAGGCGACAAAATATAAGAAT 57.134 32.000 0.00 0.00 0.00 2.40
2677 3457 8.780846 TTAGTTGAGGCGACAAAATATAAGAA 57.219 30.769 0.00 0.00 0.00 2.52
2681 3461 9.214957 CCATATTAGTTGAGGCGACAAAATATA 57.785 33.333 0.00 7.45 29.66 0.86
2682 3462 7.719633 ACCATATTAGTTGAGGCGACAAAATAT 59.280 33.333 0.00 6.64 30.23 1.28
2683 3463 7.051623 ACCATATTAGTTGAGGCGACAAAATA 58.948 34.615 0.00 5.01 0.00 1.40
2685 3465 5.250200 ACCATATTAGTTGAGGCGACAAAA 58.750 37.500 0.00 0.00 0.00 2.44
2686 3466 4.839121 ACCATATTAGTTGAGGCGACAAA 58.161 39.130 0.00 0.00 0.00 2.83
2687 3467 4.481368 ACCATATTAGTTGAGGCGACAA 57.519 40.909 0.00 0.00 0.00 3.18
2688 3468 4.161565 AGAACCATATTAGTTGAGGCGACA 59.838 41.667 0.00 0.00 0.00 4.35
2689 3469 4.508124 CAGAACCATATTAGTTGAGGCGAC 59.492 45.833 0.00 0.00 0.00 5.19
2690 3470 4.442893 CCAGAACCATATTAGTTGAGGCGA 60.443 45.833 0.00 0.00 0.00 5.54
2691 3471 3.809832 CCAGAACCATATTAGTTGAGGCG 59.190 47.826 0.00 0.00 0.00 5.52
2692 3472 4.781934 ACCAGAACCATATTAGTTGAGGC 58.218 43.478 0.00 0.00 0.00 4.70
2693 3473 8.801882 TTAAACCAGAACCATATTAGTTGAGG 57.198 34.615 0.00 0.00 0.00 3.86
2704 3484 9.710900 GAATTCTTCAAATTAAACCAGAACCAT 57.289 29.630 0.00 0.00 0.00 3.55
2705 3485 8.147704 GGAATTCTTCAAATTAAACCAGAACCA 58.852 33.333 5.23 0.00 0.00 3.67
2706 3486 8.367911 AGGAATTCTTCAAATTAAACCAGAACC 58.632 33.333 5.23 0.00 0.00 3.62
2718 3498 9.736023 GCGACAAAATATAGGAATTCTTCAAAT 57.264 29.630 5.23 0.00 0.00 2.32
2719 3499 8.188139 GGCGACAAAATATAGGAATTCTTCAAA 58.812 33.333 5.23 0.00 0.00 2.69
2720 3500 7.556275 AGGCGACAAAATATAGGAATTCTTCAA 59.444 33.333 5.23 0.00 0.00 2.69
2721 3501 7.054124 AGGCGACAAAATATAGGAATTCTTCA 58.946 34.615 5.23 0.00 0.00 3.02
2722 3502 7.226720 TGAGGCGACAAAATATAGGAATTCTTC 59.773 37.037 5.23 0.00 0.00 2.87
2723 3503 7.054124 TGAGGCGACAAAATATAGGAATTCTT 58.946 34.615 5.23 0.00 0.00 2.52
2724 3504 6.591935 TGAGGCGACAAAATATAGGAATTCT 58.408 36.000 5.23 0.00 0.00 2.40
2725 3505 6.861065 TGAGGCGACAAAATATAGGAATTC 57.139 37.500 0.00 0.00 0.00 2.17
2726 3506 6.828785 AGTTGAGGCGACAAAATATAGGAATT 59.171 34.615 0.00 0.00 0.00 2.17
2727 3507 6.357367 AGTTGAGGCGACAAAATATAGGAAT 58.643 36.000 0.00 0.00 0.00 3.01
2728 3508 5.741011 AGTTGAGGCGACAAAATATAGGAA 58.259 37.500 0.00 0.00 0.00 3.36
2729 3509 5.353394 AGTTGAGGCGACAAAATATAGGA 57.647 39.130 0.00 0.00 0.00 2.94
2730 3510 7.730364 ATTAGTTGAGGCGACAAAATATAGG 57.270 36.000 0.00 0.00 0.00 2.57
2732 3512 9.214957 CCATATTAGTTGAGGCGACAAAATATA 57.785 33.333 0.00 7.45 29.66 0.86
2733 3513 7.719633 ACCATATTAGTTGAGGCGACAAAATAT 59.280 33.333 0.00 6.64 30.23 1.28
2734 3514 7.051623 ACCATATTAGTTGAGGCGACAAAATA 58.948 34.615 0.00 5.01 0.00 1.40
2735 3515 5.885912 ACCATATTAGTTGAGGCGACAAAAT 59.114 36.000 0.00 0.00 0.00 1.82
2736 3516 5.250200 ACCATATTAGTTGAGGCGACAAAA 58.750 37.500 0.00 0.00 0.00 2.44
2737 3517 4.839121 ACCATATTAGTTGAGGCGACAAA 58.161 39.130 0.00 0.00 0.00 2.83
2738 3518 4.481368 ACCATATTAGTTGAGGCGACAA 57.519 40.909 0.00 0.00 0.00 3.18
2739 3519 4.161565 AGAACCATATTAGTTGAGGCGACA 59.838 41.667 0.00 0.00 0.00 4.35
2740 3520 4.508124 CAGAACCATATTAGTTGAGGCGAC 59.492 45.833 0.00 0.00 0.00 5.19
2741 3521 4.693283 CAGAACCATATTAGTTGAGGCGA 58.307 43.478 0.00 0.00 0.00 5.54
2742 3522 3.248602 GCAGAACCATATTAGTTGAGGCG 59.751 47.826 0.00 0.00 0.00 5.52
2743 3523 4.455606 AGCAGAACCATATTAGTTGAGGC 58.544 43.478 0.00 0.00 0.00 4.70
2744 3524 7.121168 TGAAAAGCAGAACCATATTAGTTGAGG 59.879 37.037 0.00 0.00 0.00 3.86
2745 3525 8.044060 TGAAAAGCAGAACCATATTAGTTGAG 57.956 34.615 0.00 0.00 0.00 3.02
2746 3526 7.994425 TGAAAAGCAGAACCATATTAGTTGA 57.006 32.000 0.00 0.00 0.00 3.18
2747 3527 9.294030 GAATGAAAAGCAGAACCATATTAGTTG 57.706 33.333 0.00 0.00 0.00 3.16
2748 3528 9.247861 AGAATGAAAAGCAGAACCATATTAGTT 57.752 29.630 0.00 0.00 0.00 2.24
2749 3529 8.680903 CAGAATGAAAAGCAGAACCATATTAGT 58.319 33.333 0.00 0.00 39.69 2.24
2750 3530 8.896744 TCAGAATGAAAAGCAGAACCATATTAG 58.103 33.333 0.00 0.00 45.97 1.73
2751 3531 8.806429 TCAGAATGAAAAGCAGAACCATATTA 57.194 30.769 0.00 0.00 45.97 0.98
2752 3532 7.707624 TCAGAATGAAAAGCAGAACCATATT 57.292 32.000 0.00 0.00 45.97 1.28
2797 3578 4.022068 GCAAATCATCACCAAAAGGTCTCA 60.022 41.667 0.00 0.00 0.00 3.27
2808 3589 1.273048 TGGCAACTGCAAATCATCACC 59.727 47.619 3.76 0.00 44.36 4.02
2815 3596 2.034124 ACTTGAGTGGCAACTGCAAAT 58.966 42.857 0.00 0.00 44.36 2.32
2817 3598 0.740149 CACTTGAGTGGCAACTGCAA 59.260 50.000 0.00 2.17 44.36 4.08
2943 3726 9.159254 AGCCGAATGATATCATCCCTATTAATA 57.841 33.333 18.44 0.00 35.10 0.98
2947 3730 5.965033 AGCCGAATGATATCATCCCTATT 57.035 39.130 18.44 2.67 35.10 1.73
2949 3732 5.163405 GCTTAGCCGAATGATATCATCCCTA 60.163 44.000 18.44 12.64 35.10 3.53
2955 3755 7.334421 GGATAAAAGCTTAGCCGAATGATATCA 59.666 37.037 8.10 8.10 34.02 2.15
2965 3765 4.662145 CTGTTTGGATAAAAGCTTAGCCG 58.338 43.478 0.00 0.00 45.08 5.52
2991 3791 8.541899 AAACTAGGACCAATTCAAGGTTTTTA 57.458 30.769 0.00 0.00 40.09 1.52
2996 3796 4.105697 TGGAAACTAGGACCAATTCAAGGT 59.894 41.667 0.00 0.00 43.46 3.50
2997 3797 4.662278 TGGAAACTAGGACCAATTCAAGG 58.338 43.478 0.00 0.00 0.00 3.61
2998 3798 6.013842 GTTGGAAACTAGGACCAATTCAAG 57.986 41.667 16.40 0.00 45.32 3.02
3036 3836 5.861251 CGCCTGTTAATGTTTTTCAAGCATA 59.139 36.000 0.00 0.00 0.00 3.14
3042 3842 9.562583 GTATTAATCGCCTGTTAATGTTTTTCA 57.437 29.630 0.00 0.00 34.54 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.