Multiple sequence alignment - TraesCS2B01G129200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G129200 chr2B 100.000 4199 0 0 1 4199 96595483 96599681 0.000000e+00 7755.0
1 TraesCS2B01G129200 chr2B 97.917 576 11 1 1 575 96587486 96588061 0.000000e+00 996.0
2 TraesCS2B01G129200 chr2D 95.908 2664 93 9 770 3431 61796016 61798665 0.000000e+00 4301.0
3 TraesCS2B01G129200 chr2D 95.977 348 13 1 3612 3958 61798647 61798994 7.880000e-157 564.0
4 TraesCS2B01G129200 chr2D 96.479 142 4 1 4058 4199 61799053 61799193 2.520000e-57 233.0
5 TraesCS2B01G129200 chr2A 95.980 2388 81 6 861 3236 62265268 62267652 0.000000e+00 3864.0
6 TraesCS2B01G129200 chr2A 93.320 494 17 7 3612 4090 62267799 62268291 0.000000e+00 715.0
7 TraesCS2B01G129200 chr2A 98.438 192 3 0 3432 3623 463183840 463183649 5.200000e-89 339.0
8 TraesCS2B01G129200 chr2A 93.296 179 12 0 3253 3431 62267639 62267817 8.950000e-67 265.0
9 TraesCS2B01G129200 chr3B 93.739 591 30 3 1 584 598487026 598487616 0.000000e+00 880.0
10 TraesCS2B01G129200 chr3B 91.638 586 41 5 1 579 111961556 111962140 0.000000e+00 804.0
11 TraesCS2B01G129200 chr3B 91.237 582 42 6 1 574 155050071 155049491 0.000000e+00 784.0
12 TraesCS2B01G129200 chr7B 93.264 579 33 2 1 574 496101324 496101901 0.000000e+00 848.0
13 TraesCS2B01G129200 chr7B 93.103 580 34 2 1 575 496088518 496089096 0.000000e+00 845.0
14 TraesCS2B01G129200 chr7B 92.083 581 40 2 1 575 193787364 193786784 0.000000e+00 813.0
15 TraesCS2B01G129200 chr7B 91.652 587 43 3 1 581 193800192 193799606 0.000000e+00 808.0
16 TraesCS2B01G129200 chr7B 98.947 190 0 2 3424 3613 588063739 588063926 5.200000e-89 339.0
17 TraesCS2B01G129200 chr7B 99.462 186 0 1 3427 3612 624944919 624944735 1.870000e-88 337.0
18 TraesCS2B01G129200 chr7B 97.938 194 3 1 3432 3625 317798108 317797916 6.730000e-88 335.0
19 TraesCS2B01G129200 chr5B 90.614 586 46 7 1 578 604135521 604134937 0.000000e+00 769.0
20 TraesCS2B01G129200 chr5B 94.444 144 8 0 632 775 684618205 684618348 5.460000e-54 222.0
21 TraesCS2B01G129200 chr5A 100.000 185 0 0 3428 3612 416223585 416223769 4.020000e-90 342.0
22 TraesCS2B01G129200 chr5A 97.015 201 3 2 3432 3630 492468778 492468977 6.730000e-88 335.0
23 TraesCS2B01G129200 chr6A 97.970 197 2 2 3432 3626 189563659 189563463 1.450000e-89 340.0
24 TraesCS2B01G129200 chr3A 98.947 190 1 1 3432 3621 83748688 83748876 5.200000e-89 339.0
25 TraesCS2B01G129200 chr1A 97.959 196 1 2 3432 3624 33225116 33224921 1.870000e-88 337.0
26 TraesCS2B01G129200 chr3D 88.177 203 21 2 575 775 23679703 23679904 5.430000e-59 239.0
27 TraesCS2B01G129200 chr3D 90.541 148 13 1 630 776 581865710 581865563 1.190000e-45 195.0
28 TraesCS2B01G129200 chr7A 89.362 188 17 2 575 760 617918773 617918959 2.520000e-57 233.0
29 TraesCS2B01G129200 chr7A 100.000 28 0 0 748 775 617919195 617919222 8.000000e-03 52.8
30 TraesCS2B01G129200 chr4A 87.565 193 23 1 584 775 598681589 598681397 5.460000e-54 222.0
31 TraesCS2B01G129200 chr6D 88.108 185 21 1 575 759 108461033 108461216 7.070000e-53 219.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G129200 chr2B 96595483 96599681 4198 False 7755.000000 7755 100.000000 1 4199 1 chr2B.!!$F2 4198
1 TraesCS2B01G129200 chr2B 96587486 96588061 575 False 996.000000 996 97.917000 1 575 1 chr2B.!!$F1 574
2 TraesCS2B01G129200 chr2D 61796016 61799193 3177 False 1699.333333 4301 96.121333 770 4199 3 chr2D.!!$F1 3429
3 TraesCS2B01G129200 chr2A 62265268 62268291 3023 False 1614.666667 3864 94.198667 861 4090 3 chr2A.!!$F1 3229
4 TraesCS2B01G129200 chr3B 598487026 598487616 590 False 880.000000 880 93.739000 1 584 1 chr3B.!!$F2 583
5 TraesCS2B01G129200 chr3B 111961556 111962140 584 False 804.000000 804 91.638000 1 579 1 chr3B.!!$F1 578
6 TraesCS2B01G129200 chr3B 155049491 155050071 580 True 784.000000 784 91.237000 1 574 1 chr3B.!!$R1 573
7 TraesCS2B01G129200 chr7B 496101324 496101901 577 False 848.000000 848 93.264000 1 574 1 chr7B.!!$F2 573
8 TraesCS2B01G129200 chr7B 496088518 496089096 578 False 845.000000 845 93.103000 1 575 1 chr7B.!!$F1 574
9 TraesCS2B01G129200 chr7B 193786784 193787364 580 True 813.000000 813 92.083000 1 575 1 chr7B.!!$R1 574
10 TraesCS2B01G129200 chr7B 193799606 193800192 586 True 808.000000 808 91.652000 1 581 1 chr7B.!!$R2 580
11 TraesCS2B01G129200 chr5B 604134937 604135521 584 True 769.000000 769 90.614000 1 578 1 chr5B.!!$R1 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
588 628 0.109086 CGACAGAAGACCTGATGCGT 60.109 55.0 0.0 0.0 45.78 5.24 F
767 807 0.250814 AACGCCCGGTATCCAAACAA 60.251 50.0 0.0 0.0 0.00 2.83 F
1713 1764 0.316522 ATGCCCAGATGATCGACTCG 59.683 55.0 0.0 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2016 2067 0.033011 GCCTAGTCCTGGTCTCCTCA 60.033 60.0 0.00 0.0 0.00 3.86 R
2752 2803 0.465460 GCATCCGGTGAAAGGCCATA 60.465 55.0 5.01 0.0 0.00 2.74 R
3429 3481 0.105964 TGCACCAGGTTGCCCTTTAA 60.106 50.0 10.46 0.0 42.25 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
270 277 3.948719 GGGGTGGTTGGAGTCGCA 61.949 66.667 0.00 0.00 0.00 5.10
575 615 2.268920 GCCCATTGCTCCGACAGA 59.731 61.111 0.00 0.00 36.87 3.41
581 621 1.066573 CATTGCTCCGACAGAAGACCT 60.067 52.381 0.00 0.00 0.00 3.85
583 623 0.539669 TGCTCCGACAGAAGACCTGA 60.540 55.000 0.00 0.00 45.78 3.86
584 624 0.820871 GCTCCGACAGAAGACCTGAT 59.179 55.000 0.00 0.00 45.78 2.90
585 625 1.470632 GCTCCGACAGAAGACCTGATG 60.471 57.143 0.00 0.00 45.78 3.07
586 626 0.532573 TCCGACAGAAGACCTGATGC 59.467 55.000 0.00 0.00 45.78 3.91
587 627 0.803768 CCGACAGAAGACCTGATGCG 60.804 60.000 0.00 0.00 45.78 4.73
588 628 0.109086 CGACAGAAGACCTGATGCGT 60.109 55.000 0.00 0.00 45.78 5.24
589 629 1.354040 GACAGAAGACCTGATGCGTG 58.646 55.000 0.00 0.00 45.78 5.34
590 630 0.969149 ACAGAAGACCTGATGCGTGA 59.031 50.000 0.00 0.00 45.78 4.35
591 631 1.552337 ACAGAAGACCTGATGCGTGAT 59.448 47.619 0.00 0.00 45.78 3.06
592 632 2.760650 ACAGAAGACCTGATGCGTGATA 59.239 45.455 0.00 0.00 45.78 2.15
593 633 3.386078 ACAGAAGACCTGATGCGTGATAT 59.614 43.478 0.00 0.00 45.78 1.63
594 634 4.584743 ACAGAAGACCTGATGCGTGATATA 59.415 41.667 0.00 0.00 45.78 0.86
595 635 5.244851 ACAGAAGACCTGATGCGTGATATAT 59.755 40.000 0.00 0.00 45.78 0.86
596 636 5.575995 CAGAAGACCTGATGCGTGATATATG 59.424 44.000 0.00 0.00 45.78 1.78
597 637 5.478332 AGAAGACCTGATGCGTGATATATGA 59.522 40.000 0.00 0.00 0.00 2.15
598 638 5.065704 AGACCTGATGCGTGATATATGAC 57.934 43.478 0.00 0.00 0.00 3.06
599 639 4.524328 AGACCTGATGCGTGATATATGACA 59.476 41.667 3.17 0.00 0.00 3.58
600 640 4.814147 ACCTGATGCGTGATATATGACAG 58.186 43.478 3.17 0.00 0.00 3.51
601 641 4.179298 CCTGATGCGTGATATATGACAGG 58.821 47.826 3.17 0.00 36.83 4.00
602 642 4.322273 CCTGATGCGTGATATATGACAGGT 60.322 45.833 3.17 0.00 37.95 4.00
603 643 5.213891 TGATGCGTGATATATGACAGGTT 57.786 39.130 3.17 0.00 0.00 3.50
604 644 5.610398 TGATGCGTGATATATGACAGGTTT 58.390 37.500 3.17 0.00 0.00 3.27
605 645 5.696270 TGATGCGTGATATATGACAGGTTTC 59.304 40.000 3.17 0.00 0.00 2.78
606 646 4.377021 TGCGTGATATATGACAGGTTTCC 58.623 43.478 3.17 0.00 0.00 3.13
607 647 4.141824 TGCGTGATATATGACAGGTTTCCA 60.142 41.667 3.17 0.00 0.00 3.53
608 648 4.814234 GCGTGATATATGACAGGTTTCCAA 59.186 41.667 3.17 0.00 0.00 3.53
609 649 5.295787 GCGTGATATATGACAGGTTTCCAAA 59.704 40.000 3.17 0.00 0.00 3.28
610 650 6.715464 CGTGATATATGACAGGTTTCCAAAC 58.285 40.000 3.17 0.00 38.17 2.93
611 651 6.315144 CGTGATATATGACAGGTTTCCAAACA 59.685 38.462 3.17 0.00 40.63 2.83
612 652 7.148323 CGTGATATATGACAGGTTTCCAAACAA 60.148 37.037 3.17 0.00 40.63 2.83
613 653 8.519526 GTGATATATGACAGGTTTCCAAACAAA 58.480 33.333 4.63 0.00 40.63 2.83
614 654 8.739039 TGATATATGACAGGTTTCCAAACAAAG 58.261 33.333 4.63 0.00 40.63 2.77
615 655 8.877864 ATATATGACAGGTTTCCAAACAAAGA 57.122 30.769 4.63 0.00 40.63 2.52
616 656 5.930837 ATGACAGGTTTCCAAACAAAGAA 57.069 34.783 4.63 0.00 40.63 2.52
617 657 5.930837 TGACAGGTTTCCAAACAAAGAAT 57.069 34.783 4.63 0.00 40.63 2.40
618 658 6.293004 TGACAGGTTTCCAAACAAAGAATT 57.707 33.333 4.63 0.00 40.63 2.17
619 659 7.411486 TGACAGGTTTCCAAACAAAGAATTA 57.589 32.000 4.63 0.00 40.63 1.40
620 660 7.262048 TGACAGGTTTCCAAACAAAGAATTAC 58.738 34.615 4.63 0.00 40.63 1.89
621 661 7.093727 TGACAGGTTTCCAAACAAAGAATTACA 60.094 33.333 4.63 0.00 40.63 2.41
622 662 7.616313 ACAGGTTTCCAAACAAAGAATTACAA 58.384 30.769 4.63 0.00 40.63 2.41
623 663 8.097662 ACAGGTTTCCAAACAAAGAATTACAAA 58.902 29.630 4.63 0.00 40.63 2.83
624 664 8.603181 CAGGTTTCCAAACAAAGAATTACAAAG 58.397 33.333 4.63 0.00 40.63 2.77
625 665 8.536175 AGGTTTCCAAACAAAGAATTACAAAGA 58.464 29.630 4.63 0.00 40.63 2.52
626 666 8.600625 GGTTTCCAAACAAAGAATTACAAAGAC 58.399 33.333 4.63 0.00 40.63 3.01
627 667 8.600625 GTTTCCAAACAAAGAATTACAAAGACC 58.399 33.333 0.00 0.00 38.74 3.85
628 668 7.654022 TCCAAACAAAGAATTACAAAGACCT 57.346 32.000 0.00 0.00 0.00 3.85
629 669 8.754991 TCCAAACAAAGAATTACAAAGACCTA 57.245 30.769 0.00 0.00 0.00 3.08
630 670 9.191479 TCCAAACAAAGAATTACAAAGACCTAA 57.809 29.630 0.00 0.00 0.00 2.69
631 671 9.981114 CCAAACAAAGAATTACAAAGACCTAAT 57.019 29.630 0.00 0.00 0.00 1.73
644 684 8.859236 ACAAAGACCTAATTAGTTACTTTCCC 57.141 34.615 17.69 0.00 0.00 3.97
645 685 8.442374 ACAAAGACCTAATTAGTTACTTTCCCA 58.558 33.333 17.69 0.00 0.00 4.37
646 686 9.292195 CAAAGACCTAATTAGTTACTTTCCCAA 57.708 33.333 17.69 0.00 0.00 4.12
647 687 8.859236 AAGACCTAATTAGTTACTTTCCCAAC 57.141 34.615 11.50 0.00 0.00 3.77
648 688 7.981142 AGACCTAATTAGTTACTTTCCCAACA 58.019 34.615 11.50 0.00 0.00 3.33
649 689 7.881751 AGACCTAATTAGTTACTTTCCCAACAC 59.118 37.037 11.50 0.00 0.00 3.32
650 690 7.519927 ACCTAATTAGTTACTTTCCCAACACA 58.480 34.615 11.50 0.00 0.00 3.72
651 691 8.000127 ACCTAATTAGTTACTTTCCCAACACAA 59.000 33.333 11.50 0.00 0.00 3.33
652 692 8.852135 CCTAATTAGTTACTTTCCCAACACAAA 58.148 33.333 11.50 0.00 0.00 2.83
653 693 9.673454 CTAATTAGTTACTTTCCCAACACAAAC 57.327 33.333 4.18 0.00 0.00 2.93
654 694 7.648039 ATTAGTTACTTTCCCAACACAAACA 57.352 32.000 0.00 0.00 0.00 2.83
655 695 5.319140 AGTTACTTTCCCAACACAAACAC 57.681 39.130 0.00 0.00 0.00 3.32
656 696 2.931512 ACTTTCCCAACACAAACACG 57.068 45.000 0.00 0.00 0.00 4.49
657 697 2.438411 ACTTTCCCAACACAAACACGA 58.562 42.857 0.00 0.00 0.00 4.35
658 698 3.020984 ACTTTCCCAACACAAACACGAT 58.979 40.909 0.00 0.00 0.00 3.73
659 699 3.445805 ACTTTCCCAACACAAACACGATT 59.554 39.130 0.00 0.00 0.00 3.34
660 700 4.081917 ACTTTCCCAACACAAACACGATTT 60.082 37.500 0.00 0.00 0.00 2.17
661 701 4.457834 TTCCCAACACAAACACGATTTT 57.542 36.364 0.00 0.00 0.00 1.82
662 702 3.775202 TCCCAACACAAACACGATTTTG 58.225 40.909 10.61 10.61 41.47 2.44
663 703 2.283884 CCCAACACAAACACGATTTTGC 59.716 45.455 11.70 0.00 39.67 3.68
664 704 2.926200 CCAACACAAACACGATTTTGCA 59.074 40.909 11.70 0.00 39.67 4.08
665 705 3.555139 CCAACACAAACACGATTTTGCAT 59.445 39.130 11.70 0.78 39.67 3.96
666 706 4.742167 CCAACACAAACACGATTTTGCATA 59.258 37.500 11.70 0.00 39.67 3.14
667 707 5.233050 CCAACACAAACACGATTTTGCATAA 59.767 36.000 11.70 0.00 39.67 1.90
668 708 6.237942 CCAACACAAACACGATTTTGCATAAA 60.238 34.615 11.70 0.00 39.67 1.40
669 709 6.267500 ACACAAACACGATTTTGCATAAAC 57.733 33.333 11.70 0.00 39.67 2.01
670 710 5.233263 ACACAAACACGATTTTGCATAAACC 59.767 36.000 11.70 0.00 39.67 3.27
671 711 4.747605 ACAAACACGATTTTGCATAAACCC 59.252 37.500 11.70 0.00 39.67 4.11
672 712 3.210358 ACACGATTTTGCATAAACCCG 57.790 42.857 0.00 1.59 0.00 5.28
673 713 2.554893 ACACGATTTTGCATAAACCCGT 59.445 40.909 8.60 8.60 35.70 5.28
674 714 3.004944 ACACGATTTTGCATAAACCCGTT 59.995 39.130 10.69 3.86 34.18 4.44
675 715 4.215827 ACACGATTTTGCATAAACCCGTTA 59.784 37.500 10.69 0.00 34.18 3.18
676 716 5.106078 ACACGATTTTGCATAAACCCGTTAT 60.106 36.000 10.69 3.34 34.18 1.89
678 718 4.737765 CGATTTTGCATAAACCCGTTATGG 59.262 41.667 7.89 0.00 46.37 2.74
679 719 5.449314 CGATTTTGCATAAACCCGTTATGGA 60.449 40.000 7.89 2.85 46.37 3.41
680 720 5.923733 TTTTGCATAAACCCGTTATGGAT 57.076 34.783 7.89 0.00 46.29 3.41
681 721 7.520776 CGATTTTGCATAAACCCGTTATGGATA 60.521 37.037 7.89 0.00 46.29 2.59
682 722 7.406031 TTTTGCATAAACCCGTTATGGATAA 57.594 32.000 7.89 4.49 46.29 1.75
683 723 7.406031 TTTGCATAAACCCGTTATGGATAAA 57.594 32.000 7.89 0.00 46.29 1.40
684 724 7.406031 TTGCATAAACCCGTTATGGATAAAA 57.594 32.000 7.89 0.00 46.29 1.52
685 725 7.406031 TGCATAAACCCGTTATGGATAAAAA 57.594 32.000 7.89 0.00 46.37 1.94
686 726 8.012957 TGCATAAACCCGTTATGGATAAAAAT 57.987 30.769 7.89 0.00 46.37 1.82
687 727 7.923344 TGCATAAACCCGTTATGGATAAAAATG 59.077 33.333 7.89 0.00 46.37 2.32
688 728 7.383843 GCATAAACCCGTTATGGATAAAAATGG 59.616 37.037 7.89 0.00 46.37 3.16
689 729 6.860790 AAACCCGTTATGGATAAAAATGGT 57.139 33.333 0.00 0.00 42.00 3.55
690 730 7.957992 AAACCCGTTATGGATAAAAATGGTA 57.042 32.000 0.00 0.00 42.00 3.25
691 731 8.541899 AAACCCGTTATGGATAAAAATGGTAT 57.458 30.769 0.00 0.00 42.00 2.73
692 732 8.541899 AACCCGTTATGGATAAAAATGGTATT 57.458 30.769 0.00 0.00 42.00 1.89
693 733 9.643735 AACCCGTTATGGATAAAAATGGTATTA 57.356 29.630 0.00 0.00 42.00 0.98
694 734 9.643735 ACCCGTTATGGATAAAAATGGTATTAA 57.356 29.630 0.00 0.00 42.00 1.40
731 771 4.976224 AAACCTGCTAAAAACTCGTTGT 57.024 36.364 0.00 0.00 0.00 3.32
732 772 3.963383 ACCTGCTAAAAACTCGTTGTG 57.037 42.857 0.00 0.00 0.00 3.33
733 773 3.275999 ACCTGCTAAAAACTCGTTGTGT 58.724 40.909 0.00 0.00 0.00 3.72
734 774 4.444536 ACCTGCTAAAAACTCGTTGTGTA 58.555 39.130 0.00 0.00 0.00 2.90
735 775 5.061179 ACCTGCTAAAAACTCGTTGTGTAT 58.939 37.500 0.00 0.00 0.00 2.29
736 776 6.225318 ACCTGCTAAAAACTCGTTGTGTATA 58.775 36.000 0.00 0.00 0.00 1.47
737 777 6.877322 ACCTGCTAAAAACTCGTTGTGTATAT 59.123 34.615 0.00 0.00 0.00 0.86
738 778 7.389607 ACCTGCTAAAAACTCGTTGTGTATATT 59.610 33.333 0.00 0.00 0.00 1.28
739 779 7.903431 CCTGCTAAAAACTCGTTGTGTATATTC 59.097 37.037 0.00 0.00 0.00 1.75
740 780 7.745015 TGCTAAAAACTCGTTGTGTATATTCC 58.255 34.615 0.00 0.00 0.00 3.01
741 781 7.604927 TGCTAAAAACTCGTTGTGTATATTCCT 59.395 33.333 0.00 0.00 0.00 3.36
742 782 9.090692 GCTAAAAACTCGTTGTGTATATTCCTA 57.909 33.333 0.00 0.00 0.00 2.94
745 785 9.661563 AAAAACTCGTTGTGTATATTCCTATGA 57.338 29.630 0.00 0.00 0.00 2.15
746 786 8.644318 AAACTCGTTGTGTATATTCCTATGAC 57.356 34.615 0.00 0.00 0.00 3.06
747 787 7.584122 ACTCGTTGTGTATATTCCTATGACT 57.416 36.000 0.00 0.00 0.00 3.41
748 788 8.687292 ACTCGTTGTGTATATTCCTATGACTA 57.313 34.615 0.00 0.00 0.00 2.59
749 789 9.128404 ACTCGTTGTGTATATTCCTATGACTAA 57.872 33.333 0.00 0.00 0.00 2.24
750 790 9.395707 CTCGTTGTGTATATTCCTATGACTAAC 57.604 37.037 0.00 0.00 0.00 2.34
751 791 8.071967 TCGTTGTGTATATTCCTATGACTAACG 58.928 37.037 0.00 0.00 36.84 3.18
752 792 7.149015 CGTTGTGTATATTCCTATGACTAACGC 60.149 40.741 0.00 0.00 0.00 4.84
753 793 6.684686 TGTGTATATTCCTATGACTAACGCC 58.315 40.000 0.00 0.00 0.00 5.68
754 794 6.098017 GTGTATATTCCTATGACTAACGCCC 58.902 44.000 0.00 0.00 0.00 6.13
755 795 2.814280 ATTCCTATGACTAACGCCCG 57.186 50.000 0.00 0.00 0.00 6.13
756 796 0.748450 TTCCTATGACTAACGCCCGG 59.252 55.000 0.00 0.00 0.00 5.73
757 797 0.396139 TCCTATGACTAACGCCCGGT 60.396 55.000 0.00 0.00 0.00 5.28
758 798 1.133823 TCCTATGACTAACGCCCGGTA 60.134 52.381 0.00 0.00 0.00 4.02
759 799 1.891150 CCTATGACTAACGCCCGGTAT 59.109 52.381 0.00 0.00 0.00 2.73
760 800 2.094854 CCTATGACTAACGCCCGGTATC 60.095 54.545 0.00 0.00 0.00 2.24
761 801 0.677842 ATGACTAACGCCCGGTATCC 59.322 55.000 0.00 0.00 0.00 2.59
762 802 0.683828 TGACTAACGCCCGGTATCCA 60.684 55.000 0.00 0.00 0.00 3.41
763 803 0.461135 GACTAACGCCCGGTATCCAA 59.539 55.000 0.00 0.00 0.00 3.53
764 804 0.903942 ACTAACGCCCGGTATCCAAA 59.096 50.000 0.00 0.00 0.00 3.28
765 805 1.292992 CTAACGCCCGGTATCCAAAC 58.707 55.000 0.00 0.00 0.00 2.93
766 806 0.612229 TAACGCCCGGTATCCAAACA 59.388 50.000 0.00 0.00 0.00 2.83
767 807 0.250814 AACGCCCGGTATCCAAACAA 60.251 50.000 0.00 0.00 0.00 2.83
768 808 0.956902 ACGCCCGGTATCCAAACAAC 60.957 55.000 0.00 0.00 0.00 3.32
777 817 4.080975 CGGTATCCAAACAACCCCTAAGTA 60.081 45.833 0.00 0.00 0.00 2.24
846 886 7.530426 AAAAAGGCAGTAATCTGAACTGAAT 57.470 32.000 12.48 0.00 45.89 2.57
847 887 6.506500 AAAGGCAGTAATCTGAACTGAATG 57.493 37.500 12.48 0.00 45.89 2.67
848 888 5.171339 AGGCAGTAATCTGAACTGAATGT 57.829 39.130 12.48 0.00 45.89 2.71
899 941 4.373116 CCGGCCCCGATACGATGG 62.373 72.222 8.54 0.00 42.83 3.51
941 983 1.576356 GGCAGATCGCAGAAACTAGG 58.424 55.000 10.82 0.00 43.58 3.02
978 1023 4.185059 GGGTACCGTCTCGACCGC 62.185 72.222 5.65 0.00 40.86 5.68
1353 1404 3.288290 CCGAGCGCCGTCTCCTAT 61.288 66.667 2.29 0.00 36.31 2.57
1428 1479 2.890474 CTCGACGAAATGCCCCGG 60.890 66.667 0.00 0.00 0.00 5.73
1639 1690 2.484264 GGGTTCTTCCACATTGTCTTCG 59.516 50.000 0.00 0.00 38.11 3.79
1707 1758 2.555757 GTTTGCCTATGCCCAGATGATC 59.444 50.000 0.00 0.00 36.33 2.92
1713 1764 0.316522 ATGCCCAGATGATCGACTCG 59.683 55.000 0.00 0.00 0.00 4.18
2007 2058 2.112898 GCCTCAATGTGGGCATGAG 58.887 57.895 13.01 0.00 46.84 2.90
2016 2067 1.355381 TGTGGGCATGAGAAACCTGAT 59.645 47.619 0.00 0.00 0.00 2.90
2130 2181 2.520458 CAGGGGGACTGCAAACCA 59.480 61.111 10.35 0.00 40.97 3.67
2136 2187 1.168714 GGGACTGCAAACCAGATGTC 58.831 55.000 10.35 1.17 44.64 3.06
2286 2337 2.609747 TCTGGATACCTGGATGTAGGC 58.390 52.381 0.00 0.00 41.75 3.93
2447 2498 8.074370 CGATGAAATGAAATCAAGTAGCATCAT 58.926 33.333 0.00 0.00 0.00 2.45
2493 2544 1.812571 GTGATCAAAGGGTTGTGCGAT 59.187 47.619 0.00 0.00 36.07 4.58
2643 2694 2.285220 CGATTTCCTGTATGAGTTGGCG 59.715 50.000 0.00 0.00 0.00 5.69
2743 2794 3.372025 GGCCTATCAATTGGTGAAGGAGT 60.372 47.826 11.15 0.00 40.50 3.85
2752 2803 2.408565 TGGTGAAGGAGTTGAGAAGGT 58.591 47.619 0.00 0.00 0.00 3.50
2820 2871 3.831333 TGCACCTTTATGGCAATGAAGAA 59.169 39.130 7.17 0.00 40.22 2.52
2879 2930 4.152938 CGATCAAAGTTCTGCAGATGACAA 59.847 41.667 19.04 0.00 0.00 3.18
2960 3011 6.313658 TCGTCAGAACATTTGGATGAAGTATG 59.686 38.462 0.00 0.00 36.73 2.39
3045 3096 1.406898 TCAGATCTTACTGAGCCAGCG 59.593 52.381 0.00 0.00 41.21 5.18
3165 3216 4.893829 ACCTCTAAGAGAACCACTTTCC 57.106 45.455 0.00 0.00 34.32 3.13
3167 3218 3.510360 CCTCTAAGAGAACCACTTTCCGA 59.490 47.826 0.00 0.00 34.32 4.55
3207 3258 4.085357 TGGCTTGCTCTAGAACAAGAAA 57.915 40.909 30.97 18.71 44.89 2.52
3328 3380 0.610232 GCACCTGTCAATGAAGGCCT 60.610 55.000 0.00 0.00 37.03 5.19
3357 3409 0.951558 CAACGGCAAAGCTGGTAACT 59.048 50.000 2.60 0.00 39.57 2.24
3399 3451 1.586422 GCTTGAGCTTGACTGACACA 58.414 50.000 0.00 0.00 38.21 3.72
3403 3455 3.266510 TGAGCTTGACTGACACAACTT 57.733 42.857 0.00 0.00 0.00 2.66
3422 3474 4.620982 ACTTATTTTTGGCTGCACTTGAC 58.379 39.130 0.50 0.00 0.00 3.18
3423 3475 4.099266 ACTTATTTTTGGCTGCACTTGACA 59.901 37.500 0.50 0.00 0.00 3.58
3424 3476 3.756933 ATTTTTGGCTGCACTTGACAT 57.243 38.095 0.50 0.00 0.00 3.06
3425 3477 4.870123 ATTTTTGGCTGCACTTGACATA 57.130 36.364 0.50 0.00 0.00 2.29
3426 3478 4.662468 TTTTTGGCTGCACTTGACATAA 57.338 36.364 0.50 0.00 0.00 1.90
3427 3479 3.921119 TTTGGCTGCACTTGACATAAG 57.079 42.857 0.50 0.00 0.00 1.73
3428 3480 1.167851 TGGCTGCACTTGACATAAGC 58.832 50.000 0.50 0.00 0.00 3.09
3429 3481 1.271543 TGGCTGCACTTGACATAAGCT 60.272 47.619 0.50 0.00 0.00 3.74
3430 3482 1.815003 GGCTGCACTTGACATAAGCTT 59.185 47.619 3.48 3.48 0.00 3.74
3431 3483 3.009723 GGCTGCACTTGACATAAGCTTA 58.990 45.455 8.99 8.99 0.00 3.09
3432 3484 3.440173 GGCTGCACTTGACATAAGCTTAA 59.560 43.478 10.85 0.00 0.00 1.85
3433 3485 4.082787 GGCTGCACTTGACATAAGCTTAAA 60.083 41.667 10.85 0.00 0.00 1.52
3434 3486 5.091431 GCTGCACTTGACATAAGCTTAAAG 58.909 41.667 10.85 11.66 0.00 1.85
3435 3487 5.627499 TGCACTTGACATAAGCTTAAAGG 57.373 39.130 10.85 5.98 0.00 3.11
3436 3488 4.458989 TGCACTTGACATAAGCTTAAAGGG 59.541 41.667 10.85 11.46 0.00 3.95
3437 3489 4.675408 GCACTTGACATAAGCTTAAAGGGC 60.675 45.833 21.15 21.15 36.95 5.19
3438 3490 4.458989 CACTTGACATAAGCTTAAAGGGCA 59.541 41.667 10.85 8.82 0.00 5.36
3439 3491 5.048083 CACTTGACATAAGCTTAAAGGGCAA 60.048 40.000 18.04 18.04 0.00 4.52
3440 3492 5.048013 ACTTGACATAAGCTTAAAGGGCAAC 60.048 40.000 10.85 0.00 0.00 4.17
3452 3504 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
3453 3505 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
3454 3506 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
3455 3507 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
3456 3508 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
3462 3514 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3463 3515 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3464 3516 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3465 3517 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3468 3520 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3480 3532 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
3481 3533 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
3482 3534 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
3483 3535 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
3484 3536 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
3485 3537 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
3486 3538 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
3487 3539 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
3488 3540 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
3489 3541 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
3490 3542 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
3491 3543 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
3492 3544 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3493 3545 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3494 3546 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3495 3547 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3496 3548 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3497 3549 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3498 3550 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3508 3560 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
3509 3561 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
3510 3562 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
3511 3563 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
3512 3564 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
3513 3565 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
3514 3566 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
3515 3567 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
3516 3568 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
3517 3569 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
3518 3570 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
3519 3571 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
3520 3572 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
3521 3573 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
3522 3574 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
3523 3575 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
3524 3576 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
3525 3577 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
3526 3578 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
3527 3579 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
3528 3580 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
3529 3581 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
3530 3582 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
3531 3583 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
3532 3584 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
3533 3585 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
3534 3586 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
3546 3598 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
3547 3599 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
3548 3600 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
3549 3601 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
3550 3602 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
3551 3603 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
3552 3604 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
3553 3605 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
3554 3606 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
3555 3607 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
3556 3608 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
3557 3609 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
3558 3610 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
3559 3611 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
3560 3612 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
3561 3613 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
3562 3614 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
3563 3615 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
3564 3616 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
3565 3617 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
3566 3618 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
3567 3619 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
3579 3631 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
3580 3632 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
3581 3633 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
3582 3634 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
3583 3635 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
3584 3636 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
3585 3637 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
3586 3638 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
3587 3639 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
3588 3640 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
3589 3641 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
3590 3642 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
3591 3643 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
3592 3644 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
3593 3645 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
3594 3646 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
3598 3650 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
3599 3651 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
3600 3652 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
3601 3653 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
3602 3654 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
3603 3655 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
3604 3656 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
3605 3657 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
3617 3669 2.204059 AGGCTCCCCTTCTGCACT 60.204 61.111 0.00 0.00 38.74 4.40
3618 3670 1.849823 AGGCTCCCCTTCTGCACTT 60.850 57.895 0.00 0.00 38.74 3.16
3619 3671 1.676967 GGCTCCCCTTCTGCACTTG 60.677 63.158 0.00 0.00 0.00 3.16
3620 3672 1.376466 GCTCCCCTTCTGCACTTGA 59.624 57.895 0.00 0.00 0.00 3.02
3702 3754 5.242838 TCACCCAACAACTGAAATCCATAAC 59.757 40.000 0.00 0.00 0.00 1.89
3778 3830 1.489574 CAGTTTTGCAATTGCTCGCA 58.510 45.000 29.37 8.06 42.66 5.10
4014 4080 1.483424 GCGTCGCAAGGTATGAGAGC 61.483 60.000 13.44 0.00 38.61 4.09
4024 4090 4.207891 AGGTATGAGAGCGTTTTGACAT 57.792 40.909 0.00 0.00 0.00 3.06
4044 4110 0.103208 GGACTGATGCTACTGTCGGG 59.897 60.000 11.75 0.00 38.82 5.14
4090 4156 4.100653 CCTGGAGTTCATCTATGAAGAGCA 59.899 45.833 5.64 0.00 46.44 4.26
4091 4157 5.396101 CCTGGAGTTCATCTATGAAGAGCAA 60.396 44.000 5.64 0.00 46.44 3.91
4094 4160 7.114754 TGGAGTTCATCTATGAAGAGCAATTT 58.885 34.615 5.64 0.00 46.44 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
160 161 0.597637 GCTACAGTGCGCCATATCGT 60.598 55.000 4.18 0.00 0.00 3.73
270 277 2.359967 GGCTGAGGGTAGTCGGCTT 61.360 63.158 0.00 0.00 46.50 4.35
575 615 5.011023 TGTCATATATCACGCATCAGGTCTT 59.989 40.000 0.00 0.00 0.00 3.01
581 621 4.871933 ACCTGTCATATATCACGCATCA 57.128 40.909 0.00 0.00 0.00 3.07
582 622 5.120830 GGAAACCTGTCATATATCACGCATC 59.879 44.000 0.00 0.00 0.00 3.91
583 623 4.997395 GGAAACCTGTCATATATCACGCAT 59.003 41.667 0.00 0.00 0.00 4.73
584 624 4.141824 TGGAAACCTGTCATATATCACGCA 60.142 41.667 0.00 0.00 0.00 5.24
585 625 4.377021 TGGAAACCTGTCATATATCACGC 58.623 43.478 0.00 0.00 0.00 5.34
586 626 6.315144 TGTTTGGAAACCTGTCATATATCACG 59.685 38.462 0.00 0.00 38.11 4.35
587 627 7.624360 TGTTTGGAAACCTGTCATATATCAC 57.376 36.000 0.00 0.00 38.11 3.06
588 628 8.642935 TTTGTTTGGAAACCTGTCATATATCA 57.357 30.769 0.00 0.00 38.11 2.15
589 629 8.956426 TCTTTGTTTGGAAACCTGTCATATATC 58.044 33.333 0.00 0.00 38.11 1.63
590 630 8.877864 TCTTTGTTTGGAAACCTGTCATATAT 57.122 30.769 0.00 0.00 38.11 0.86
591 631 8.698973 TTCTTTGTTTGGAAACCTGTCATATA 57.301 30.769 0.00 0.00 38.11 0.86
592 632 7.595819 TTCTTTGTTTGGAAACCTGTCATAT 57.404 32.000 0.00 0.00 38.11 1.78
593 633 7.595819 ATTCTTTGTTTGGAAACCTGTCATA 57.404 32.000 0.00 0.00 38.11 2.15
594 634 5.930837 TTCTTTGTTTGGAAACCTGTCAT 57.069 34.783 0.00 0.00 38.11 3.06
595 635 5.930837 ATTCTTTGTTTGGAAACCTGTCA 57.069 34.783 0.00 0.00 38.11 3.58
596 636 7.262048 TGTAATTCTTTGTTTGGAAACCTGTC 58.738 34.615 0.00 0.00 38.11 3.51
597 637 7.176589 TGTAATTCTTTGTTTGGAAACCTGT 57.823 32.000 0.00 0.00 38.11 4.00
598 638 8.485976 TTTGTAATTCTTTGTTTGGAAACCTG 57.514 30.769 0.00 0.00 38.11 4.00
599 639 8.536175 TCTTTGTAATTCTTTGTTTGGAAACCT 58.464 29.630 0.00 0.00 38.11 3.50
600 640 8.600625 GTCTTTGTAATTCTTTGTTTGGAAACC 58.399 33.333 0.00 0.00 38.11 3.27
601 641 8.600625 GGTCTTTGTAATTCTTTGTTTGGAAAC 58.399 33.333 0.00 0.00 39.33 2.78
602 642 8.536175 AGGTCTTTGTAATTCTTTGTTTGGAAA 58.464 29.630 0.00 0.00 0.00 3.13
603 643 8.073467 AGGTCTTTGTAATTCTTTGTTTGGAA 57.927 30.769 0.00 0.00 0.00 3.53
604 644 7.654022 AGGTCTTTGTAATTCTTTGTTTGGA 57.346 32.000 0.00 0.00 0.00 3.53
605 645 9.981114 ATTAGGTCTTTGTAATTCTTTGTTTGG 57.019 29.630 0.00 0.00 0.00 3.28
618 658 9.948964 GGGAAAGTAACTAATTAGGTCTTTGTA 57.051 33.333 22.06 0.00 0.00 2.41
619 659 8.442374 TGGGAAAGTAACTAATTAGGTCTTTGT 58.558 33.333 22.06 8.56 0.00 2.83
620 660 8.857694 TGGGAAAGTAACTAATTAGGTCTTTG 57.142 34.615 22.06 0.10 0.00 2.77
621 661 9.293404 GTTGGGAAAGTAACTAATTAGGTCTTT 57.707 33.333 19.31 19.31 0.00 2.52
622 662 8.442374 TGTTGGGAAAGTAACTAATTAGGTCTT 58.558 33.333 16.73 12.01 0.00 3.01
623 663 7.881751 GTGTTGGGAAAGTAACTAATTAGGTCT 59.118 37.037 16.73 6.99 0.00 3.85
624 664 7.662669 TGTGTTGGGAAAGTAACTAATTAGGTC 59.337 37.037 16.73 4.89 0.00 3.85
625 665 7.519927 TGTGTTGGGAAAGTAACTAATTAGGT 58.480 34.615 16.73 12.82 0.00 3.08
626 666 7.989416 TGTGTTGGGAAAGTAACTAATTAGG 57.011 36.000 16.73 0.00 0.00 2.69
627 667 9.673454 GTTTGTGTTGGGAAAGTAACTAATTAG 57.327 33.333 11.05 11.05 0.00 1.73
628 668 9.186837 TGTTTGTGTTGGGAAAGTAACTAATTA 57.813 29.630 0.00 0.00 0.00 1.40
629 669 7.977293 GTGTTTGTGTTGGGAAAGTAACTAATT 59.023 33.333 0.00 0.00 0.00 1.40
630 670 7.485810 GTGTTTGTGTTGGGAAAGTAACTAAT 58.514 34.615 0.00 0.00 0.00 1.73
631 671 6.403418 CGTGTTTGTGTTGGGAAAGTAACTAA 60.403 38.462 0.00 0.00 0.00 2.24
632 672 5.064962 CGTGTTTGTGTTGGGAAAGTAACTA 59.935 40.000 0.00 0.00 0.00 2.24
633 673 4.142556 CGTGTTTGTGTTGGGAAAGTAACT 60.143 41.667 0.00 0.00 0.00 2.24
634 674 4.099824 CGTGTTTGTGTTGGGAAAGTAAC 58.900 43.478 0.00 0.00 0.00 2.50
635 675 4.008330 TCGTGTTTGTGTTGGGAAAGTAA 58.992 39.130 0.00 0.00 0.00 2.24
636 676 3.607741 TCGTGTTTGTGTTGGGAAAGTA 58.392 40.909 0.00 0.00 0.00 2.24
637 677 2.438411 TCGTGTTTGTGTTGGGAAAGT 58.562 42.857 0.00 0.00 0.00 2.66
638 678 3.708563 ATCGTGTTTGTGTTGGGAAAG 57.291 42.857 0.00 0.00 0.00 2.62
639 679 4.457834 AAATCGTGTTTGTGTTGGGAAA 57.542 36.364 0.00 0.00 0.00 3.13
640 680 4.177026 CAAAATCGTGTTTGTGTTGGGAA 58.823 39.130 5.69 0.00 34.43 3.97
641 681 3.775202 CAAAATCGTGTTTGTGTTGGGA 58.225 40.909 5.69 0.00 34.43 4.37
642 682 2.283884 GCAAAATCGTGTTTGTGTTGGG 59.716 45.455 12.77 0.00 40.06 4.12
643 683 2.926200 TGCAAAATCGTGTTTGTGTTGG 59.074 40.909 12.77 0.00 40.06 3.77
644 684 4.775440 ATGCAAAATCGTGTTTGTGTTG 57.225 36.364 12.77 0.00 40.06 3.33
645 685 6.237969 GGTTTATGCAAAATCGTGTTTGTGTT 60.238 34.615 12.77 4.15 40.06 3.32
646 686 5.233263 GGTTTATGCAAAATCGTGTTTGTGT 59.767 36.000 12.77 6.70 40.06 3.72
647 687 5.332959 GGGTTTATGCAAAATCGTGTTTGTG 60.333 40.000 12.77 0.16 40.06 3.33
648 688 4.747605 GGGTTTATGCAAAATCGTGTTTGT 59.252 37.500 12.77 0.88 40.06 2.83
649 689 4.143431 CGGGTTTATGCAAAATCGTGTTTG 60.143 41.667 0.00 8.57 40.72 2.93
650 690 3.984633 CGGGTTTATGCAAAATCGTGTTT 59.015 39.130 0.00 0.00 0.00 2.83
651 691 3.004944 ACGGGTTTATGCAAAATCGTGTT 59.995 39.130 16.29 0.00 35.01 3.32
652 692 2.554893 ACGGGTTTATGCAAAATCGTGT 59.445 40.909 16.29 8.64 35.01 4.49
653 693 3.210358 ACGGGTTTATGCAAAATCGTG 57.790 42.857 16.29 8.24 35.01 4.35
654 694 3.926821 AACGGGTTTATGCAAAATCGT 57.073 38.095 0.00 5.41 36.64 3.73
655 695 4.737765 CCATAACGGGTTTATGCAAAATCG 59.262 41.667 0.00 4.83 44.13 3.34
656 696 5.897050 TCCATAACGGGTTTATGCAAAATC 58.103 37.500 0.00 0.00 44.13 2.17
657 697 5.923733 TCCATAACGGGTTTATGCAAAAT 57.076 34.783 0.00 0.00 44.13 1.82
658 698 5.923733 ATCCATAACGGGTTTATGCAAAA 57.076 34.783 0.00 0.00 44.13 2.44
659 699 7.406031 TTTATCCATAACGGGTTTATGCAAA 57.594 32.000 0.00 0.00 44.13 3.68
660 700 7.406031 TTTTATCCATAACGGGTTTATGCAA 57.594 32.000 0.00 0.00 44.13 4.08
661 701 7.406031 TTTTTATCCATAACGGGTTTATGCA 57.594 32.000 0.00 0.00 44.13 3.96
662 702 7.383843 CCATTTTTATCCATAACGGGTTTATGC 59.616 37.037 0.00 0.00 44.13 3.14
663 703 8.417884 ACCATTTTTATCCATAACGGGTTTATG 58.582 33.333 0.00 0.00 44.81 1.90
664 704 8.541899 ACCATTTTTATCCATAACGGGTTTAT 57.458 30.769 0.00 0.00 34.36 1.40
665 705 7.957992 ACCATTTTTATCCATAACGGGTTTA 57.042 32.000 0.00 0.00 34.36 2.01
666 706 6.860790 ACCATTTTTATCCATAACGGGTTT 57.139 33.333 0.00 0.00 34.36 3.27
667 707 8.541899 AATACCATTTTTATCCATAACGGGTT 57.458 30.769 0.00 0.00 34.36 4.11
668 708 9.643735 TTAATACCATTTTTATCCATAACGGGT 57.356 29.630 0.00 0.00 34.36 5.28
708 748 5.575218 CACAACGAGTTTTTAGCAGGTTTTT 59.425 36.000 0.00 0.00 0.00 1.94
709 749 5.099575 CACAACGAGTTTTTAGCAGGTTTT 58.900 37.500 0.00 0.00 0.00 2.43
710 750 4.157105 ACACAACGAGTTTTTAGCAGGTTT 59.843 37.500 0.00 0.00 0.00 3.27
711 751 3.692593 ACACAACGAGTTTTTAGCAGGTT 59.307 39.130 0.00 0.00 0.00 3.50
712 752 3.275999 ACACAACGAGTTTTTAGCAGGT 58.724 40.909 0.00 0.00 0.00 4.00
713 753 3.963383 ACACAACGAGTTTTTAGCAGG 57.037 42.857 0.00 0.00 0.00 4.85
714 754 7.903431 GGAATATACACAACGAGTTTTTAGCAG 59.097 37.037 0.00 0.00 0.00 4.24
715 755 7.604927 AGGAATATACACAACGAGTTTTTAGCA 59.395 33.333 0.00 0.00 0.00 3.49
716 756 7.971455 AGGAATATACACAACGAGTTTTTAGC 58.029 34.615 0.00 0.00 0.00 3.09
719 759 9.661563 TCATAGGAATATACACAACGAGTTTTT 57.338 29.630 0.00 0.00 0.00 1.94
720 760 9.095065 GTCATAGGAATATACACAACGAGTTTT 57.905 33.333 0.00 0.00 0.00 2.43
721 761 8.475639 AGTCATAGGAATATACACAACGAGTTT 58.524 33.333 0.00 0.00 0.00 2.66
722 762 8.008513 AGTCATAGGAATATACACAACGAGTT 57.991 34.615 0.00 0.00 0.00 3.01
723 763 7.584122 AGTCATAGGAATATACACAACGAGT 57.416 36.000 0.00 0.00 0.00 4.18
724 764 9.395707 GTTAGTCATAGGAATATACACAACGAG 57.604 37.037 0.00 0.00 0.00 4.18
725 765 8.071967 CGTTAGTCATAGGAATATACACAACGA 58.928 37.037 3.14 0.00 35.01 3.85
726 766 7.149015 GCGTTAGTCATAGGAATATACACAACG 60.149 40.741 4.53 4.53 35.59 4.10
727 767 7.115947 GGCGTTAGTCATAGGAATATACACAAC 59.884 40.741 0.00 0.00 0.00 3.32
728 768 7.149973 GGCGTTAGTCATAGGAATATACACAA 58.850 38.462 0.00 0.00 0.00 3.33
729 769 6.294899 GGGCGTTAGTCATAGGAATATACACA 60.295 42.308 0.00 0.00 0.00 3.72
730 770 6.098017 GGGCGTTAGTCATAGGAATATACAC 58.902 44.000 0.00 0.00 0.00 2.90
731 771 5.106038 CGGGCGTTAGTCATAGGAATATACA 60.106 44.000 0.00 0.00 0.00 2.29
732 772 5.338365 CGGGCGTTAGTCATAGGAATATAC 58.662 45.833 0.00 0.00 0.00 1.47
733 773 4.400251 CCGGGCGTTAGTCATAGGAATATA 59.600 45.833 0.00 0.00 0.00 0.86
734 774 3.194968 CCGGGCGTTAGTCATAGGAATAT 59.805 47.826 0.00 0.00 0.00 1.28
735 775 2.559668 CCGGGCGTTAGTCATAGGAATA 59.440 50.000 0.00 0.00 0.00 1.75
736 776 1.343465 CCGGGCGTTAGTCATAGGAAT 59.657 52.381 0.00 0.00 0.00 3.01
737 777 0.748450 CCGGGCGTTAGTCATAGGAA 59.252 55.000 0.00 0.00 0.00 3.36
738 778 0.396139 ACCGGGCGTTAGTCATAGGA 60.396 55.000 6.32 0.00 0.00 2.94
739 779 1.321474 TACCGGGCGTTAGTCATAGG 58.679 55.000 6.32 0.00 0.00 2.57
740 780 2.094854 GGATACCGGGCGTTAGTCATAG 60.095 54.545 6.32 0.00 0.00 2.23
741 781 1.888512 GGATACCGGGCGTTAGTCATA 59.111 52.381 6.32 0.00 0.00 2.15
742 782 0.677842 GGATACCGGGCGTTAGTCAT 59.322 55.000 6.32 0.00 0.00 3.06
743 783 0.683828 TGGATACCGGGCGTTAGTCA 60.684 55.000 6.32 0.00 0.00 3.41
744 784 0.461135 TTGGATACCGGGCGTTAGTC 59.539 55.000 6.32 0.00 0.00 2.59
745 785 0.903942 TTTGGATACCGGGCGTTAGT 59.096 50.000 6.32 0.00 0.00 2.24
746 786 1.292992 GTTTGGATACCGGGCGTTAG 58.707 55.000 6.32 0.00 0.00 2.34
747 787 0.612229 TGTTTGGATACCGGGCGTTA 59.388 50.000 6.32 0.00 0.00 3.18
748 788 0.250814 TTGTTTGGATACCGGGCGTT 60.251 50.000 6.32 0.00 0.00 4.84
749 789 0.956902 GTTGTTTGGATACCGGGCGT 60.957 55.000 6.32 0.00 0.00 5.68
750 790 1.650314 GGTTGTTTGGATACCGGGCG 61.650 60.000 6.32 0.00 0.00 6.13
751 791 1.317431 GGGTTGTTTGGATACCGGGC 61.317 60.000 6.32 0.00 32.61 6.13
752 792 0.681887 GGGGTTGTTTGGATACCGGG 60.682 60.000 6.32 0.00 32.61 5.73
753 793 0.330267 AGGGGTTGTTTGGATACCGG 59.670 55.000 0.00 0.00 32.61 5.28
754 794 3.275999 CTTAGGGGTTGTTTGGATACCG 58.724 50.000 0.00 0.00 32.61 4.02
755 795 4.311520 ACTTAGGGGTTGTTTGGATACC 57.688 45.455 0.00 0.00 0.00 2.73
756 796 8.048514 TGTTATACTTAGGGGTTGTTTGGATAC 58.951 37.037 0.00 0.00 0.00 2.24
757 797 8.160434 TGTTATACTTAGGGGTTGTTTGGATA 57.840 34.615 0.00 0.00 0.00 2.59
758 798 7.034967 TGTTATACTTAGGGGTTGTTTGGAT 57.965 36.000 0.00 0.00 0.00 3.41
759 799 6.044637 ACTGTTATACTTAGGGGTTGTTTGGA 59.955 38.462 0.00 0.00 0.00 3.53
760 800 6.243148 ACTGTTATACTTAGGGGTTGTTTGG 58.757 40.000 0.00 0.00 0.00 3.28
761 801 8.851541 TTACTGTTATACTTAGGGGTTGTTTG 57.148 34.615 0.00 0.00 0.00 2.93
762 802 9.865152 TTTTACTGTTATACTTAGGGGTTGTTT 57.135 29.630 0.00 0.00 0.00 2.83
763 803 9.511272 CTTTTACTGTTATACTTAGGGGTTGTT 57.489 33.333 0.00 0.00 0.00 2.83
764 804 8.663167 ACTTTTACTGTTATACTTAGGGGTTGT 58.337 33.333 0.00 0.00 0.00 3.32
767 807 9.552695 ACTACTTTTACTGTTATACTTAGGGGT 57.447 33.333 0.00 0.00 0.00 4.95
832 872 4.288366 TGGGTGGACATTCAGTTCAGATTA 59.712 41.667 0.00 0.00 36.06 1.75
841 881 2.105006 CTGACTGGGTGGACATTCAG 57.895 55.000 0.00 0.00 40.29 3.02
846 886 2.097110 ACTAACTGACTGGGTGGACA 57.903 50.000 0.00 0.00 0.00 4.02
847 887 3.306571 GGTAACTAACTGACTGGGTGGAC 60.307 52.174 0.00 0.00 0.00 4.02
848 888 2.901839 GGTAACTAACTGACTGGGTGGA 59.098 50.000 0.00 0.00 0.00 4.02
962 1004 4.527157 CGCGGTCGAGACGGTACC 62.527 72.222 0.16 0.16 38.10 3.34
1227 1278 4.608514 TTGGGGAGGGAGGGCACA 62.609 66.667 0.00 0.00 0.00 4.57
1288 1339 0.909610 TGGGCGAGGAGAAGGAACAT 60.910 55.000 0.00 0.00 0.00 2.71
1289 1340 1.535444 TGGGCGAGGAGAAGGAACA 60.535 57.895 0.00 0.00 0.00 3.18
1291 1342 2.291043 GGTGGGCGAGGAGAAGGAA 61.291 63.158 0.00 0.00 0.00 3.36
1398 1449 2.999648 TCGAGCAGCTTCTGGGCT 61.000 61.111 0.00 0.00 44.10 5.19
1849 1900 2.662596 CAGCTGGTACGCCCTCAA 59.337 61.111 5.57 0.00 0.00 3.02
1992 2043 2.170166 GGTTTCTCATGCCCACATTGA 58.830 47.619 0.00 0.00 32.87 2.57
2007 2058 2.093235 CCTGGTCTCCTCATCAGGTTTC 60.093 54.545 0.00 0.00 41.21 2.78
2016 2067 0.033011 GCCTAGTCCTGGTCTCCTCA 60.033 60.000 0.00 0.00 0.00 3.86
2130 2181 6.071165 TGACAGTGTTCATAGTGATGACATCT 60.071 38.462 16.25 0.00 41.92 2.90
2136 2187 6.973229 TGAATGACAGTGTTCATAGTGATG 57.027 37.500 0.00 0.00 35.02 3.07
2286 2337 2.124819 AGGGCTTCTGCATGCTCG 60.125 61.111 20.33 10.19 41.91 5.03
2387 2438 0.984230 TCTGTCAACTAGCCCAAGGG 59.016 55.000 0.00 0.00 38.57 3.95
2493 2544 1.152860 TTTCTCAAGTTGCCCCGCA 60.153 52.632 0.00 0.00 36.47 5.69
2502 2553 4.248691 GAATGCCTTTGCTTTCTCAAGT 57.751 40.909 6.07 0.00 44.21 3.16
2752 2803 0.465460 GCATCCGGTGAAAGGCCATA 60.465 55.000 5.01 0.00 0.00 2.74
2820 2871 1.197430 CCTGGTGCTCCTCCTCTTGT 61.197 60.000 6.34 0.00 34.23 3.16
2919 2970 4.045636 TGACGATGATGACGATGACAAT 57.954 40.909 0.00 0.00 34.70 2.71
2960 3011 5.106673 ACCTTAGCTTCGTTGTTATTCTTGC 60.107 40.000 0.00 0.00 0.00 4.01
3005 3056 5.721480 TCTGATGGGTTCTCAGTCATTTCTA 59.279 40.000 0.71 0.00 40.79 2.10
3136 3187 6.668283 AGTGGTTCTCTTAGAGGTTGCTTATA 59.332 38.462 9.58 0.00 0.00 0.98
3139 3190 3.648545 AGTGGTTCTCTTAGAGGTTGCTT 59.351 43.478 9.58 0.00 0.00 3.91
3165 3216 2.474410 AAACCCTTCTGGCTACTTCG 57.526 50.000 0.00 0.00 37.83 3.79
3167 3218 3.230976 CCAAAAACCCTTCTGGCTACTT 58.769 45.455 0.00 0.00 37.83 2.24
3207 3258 3.222603 CCCTTCTAACCAGCAACACTTT 58.777 45.455 0.00 0.00 0.00 2.66
3251 3303 5.450818 TGTTCTAATATGTGCCCCTTCTT 57.549 39.130 0.00 0.00 0.00 2.52
3252 3304 5.653255 ATGTTCTAATATGTGCCCCTTCT 57.347 39.130 0.00 0.00 0.00 2.85
3253 3305 5.594317 ACAATGTTCTAATATGTGCCCCTTC 59.406 40.000 0.00 0.00 0.00 3.46
3254 3306 5.360714 CACAATGTTCTAATATGTGCCCCTT 59.639 40.000 0.00 0.00 0.00 3.95
3255 3307 4.889409 CACAATGTTCTAATATGTGCCCCT 59.111 41.667 0.00 0.00 0.00 4.79
3256 3308 4.499696 GCACAATGTTCTAATATGTGCCCC 60.500 45.833 16.08 0.00 43.45 5.80
3310 3362 2.026822 ACTAGGCCTTCATTGACAGGTG 60.027 50.000 12.58 6.99 32.06 4.00
3328 3380 2.803956 GCTTTGCCGTTGTCACTAACTA 59.196 45.455 0.00 0.00 0.00 2.24
3399 3451 5.049828 GTCAAGTGCAGCCAAAAATAAGTT 58.950 37.500 0.00 0.00 0.00 2.66
3403 3455 4.870123 ATGTCAAGTGCAGCCAAAAATA 57.130 36.364 0.00 0.00 0.00 1.40
3422 3474 3.131046 CCAGGTTGCCCTTTAAGCTTATG 59.869 47.826 7.08 3.66 39.89 1.90
3423 3475 3.245622 ACCAGGTTGCCCTTTAAGCTTAT 60.246 43.478 7.08 0.00 39.89 1.73
3424 3476 2.109304 ACCAGGTTGCCCTTTAAGCTTA 59.891 45.455 0.86 0.86 39.89 3.09
3425 3477 1.133167 ACCAGGTTGCCCTTTAAGCTT 60.133 47.619 3.48 3.48 39.89 3.74
3426 3478 0.482887 ACCAGGTTGCCCTTTAAGCT 59.517 50.000 0.00 0.00 39.89 3.74
3427 3479 0.603065 CACCAGGTTGCCCTTTAAGC 59.397 55.000 0.00 0.00 39.89 3.09
3428 3480 0.603065 GCACCAGGTTGCCCTTTAAG 59.397 55.000 0.00 0.00 39.89 1.85
3429 3481 0.105964 TGCACCAGGTTGCCCTTTAA 60.106 50.000 10.46 0.00 42.25 1.52
3430 3482 0.114168 ATGCACCAGGTTGCCCTTTA 59.886 50.000 10.46 0.00 42.25 1.85
3431 3483 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
3432 3484 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
3433 3485 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
3434 3486 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
3435 3487 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
3436 3488 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
3437 3489 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
3438 3490 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
3463 3515 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
3464 3516 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
3465 3517 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
3466 3518 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
3467 3519 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
3468 3520 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
3469 3521 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
3470 3522 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
3471 3523 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
3472 3524 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
3473 3525 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
3474 3526 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
3475 3527 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3476 3528 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3477 3529 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3478 3530 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3479 3531 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3480 3532 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3481 3533 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3482 3534 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3487 3539 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
3488 3540 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
3489 3541 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
3490 3542 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
3491 3543 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
3492 3544 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
3493 3545 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
3494 3546 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
3495 3547 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
3496 3548 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
3497 3549 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
3498 3550 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
3499 3551 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
3500 3552 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
3501 3553 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
3502 3554 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
3503 3555 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
3504 3556 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
3505 3557 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
3506 3558 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
3507 3559 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
3508 3560 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
3509 3561 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
3510 3562 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
3511 3563 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
3512 3564 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
3513 3565 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
3514 3566 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
3515 3567 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
3516 3568 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
3517 3569 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
3518 3570 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
3519 3571 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
3520 3572 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
3521 3573 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
3522 3574 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
3523 3575 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
3524 3576 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
3538 3590 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
3539 3591 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
3540 3592 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
3541 3593 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
3542 3594 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
3543 3595 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
3544 3596 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
3545 3597 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
3546 3598 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
3547 3599 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
3562 3614 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
3563 3615 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
3564 3616 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
3565 3617 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
3566 3618 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
3567 3619 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
3568 3620 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
3569 3621 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
3570 3622 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
3571 3623 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
3572 3624 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
3573 3625 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
3574 3626 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
3575 3627 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
3576 3628 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
3581 3633 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
3582 3634 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
3583 3635 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
3584 3636 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
3585 3637 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
3586 3638 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
3587 3639 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
3595 3647 3.721706 AGAAGGGGAGCCTTGGCG 61.722 66.667 5.95 0.00 0.00 5.69
3596 3648 2.044551 CAGAAGGGGAGCCTTGGC 60.045 66.667 2.97 2.97 0.00 4.52
3597 3649 2.044551 GCAGAAGGGGAGCCTTGG 60.045 66.667 0.00 0.00 0.00 3.61
3598 3650 1.676967 GTGCAGAAGGGGAGCCTTG 60.677 63.158 0.00 0.00 0.00 3.61
3599 3651 1.430369 AAGTGCAGAAGGGGAGCCTT 61.430 55.000 0.00 0.00 0.00 4.35
3600 3652 1.849823 AAGTGCAGAAGGGGAGCCT 60.850 57.895 0.00 0.00 0.00 4.58
3601 3653 1.676967 CAAGTGCAGAAGGGGAGCC 60.677 63.158 0.00 0.00 0.00 4.70
3602 3654 0.957888 GTCAAGTGCAGAAGGGGAGC 60.958 60.000 0.00 0.00 0.00 4.70
3603 3655 0.397941 TGTCAAGTGCAGAAGGGGAG 59.602 55.000 0.00 0.00 0.00 4.30
3604 3656 1.067295 ATGTCAAGTGCAGAAGGGGA 58.933 50.000 0.00 0.00 0.00 4.81
3605 3657 2.787473 TATGTCAAGTGCAGAAGGGG 57.213 50.000 0.00 0.00 0.00 4.79
3606 3658 2.421424 GCTTATGTCAAGTGCAGAAGGG 59.579 50.000 0.00 0.00 36.16 3.95
3607 3659 3.341823 AGCTTATGTCAAGTGCAGAAGG 58.658 45.455 0.00 0.00 36.16 3.46
3608 3660 4.214971 ACAAGCTTATGTCAAGTGCAGAAG 59.785 41.667 0.00 0.00 37.98 2.85
3609 3661 4.136796 ACAAGCTTATGTCAAGTGCAGAA 58.863 39.130 0.00 0.00 0.00 3.02
3610 3662 3.743521 ACAAGCTTATGTCAAGTGCAGA 58.256 40.909 0.00 0.00 0.00 4.26
3702 3754 2.417933 CTCTCCATCGGTTTCTGCAAAG 59.582 50.000 0.00 0.00 0.00 2.77
3778 3830 5.885912 ACAAATACAACAAGACCTGACAGTT 59.114 36.000 0.93 0.00 0.00 3.16
3958 4011 5.481473 ACCCGTGAAGTGATTAAGTACCTTA 59.519 40.000 0.00 0.00 0.00 2.69
3964 4017 2.370849 ACCACCCGTGAAGTGATTAAGT 59.629 45.455 0.00 0.00 37.42 2.24
3965 4018 3.053831 ACCACCCGTGAAGTGATTAAG 57.946 47.619 0.00 0.00 37.42 1.85
3966 4019 4.829872 ATACCACCCGTGAAGTGATTAA 57.170 40.909 0.00 0.00 37.42 1.40
3967 4020 4.020039 ACAATACCACCCGTGAAGTGATTA 60.020 41.667 0.00 0.00 37.42 1.75
3968 4021 3.244770 ACAATACCACCCGTGAAGTGATT 60.245 43.478 0.00 0.00 37.42 2.57
3978 4044 3.046497 GCGCCAACAATACCACCCG 62.046 63.158 0.00 0.00 0.00 5.28
4014 4080 2.485426 AGCATCAGTCCATGTCAAAACG 59.515 45.455 0.00 0.00 0.00 3.60
4024 4090 0.817654 CCGACAGTAGCATCAGTCCA 59.182 55.000 0.00 0.00 0.00 4.02
4044 4110 4.494855 GCTAGCAGCATACAGTTAACAAGC 60.495 45.833 10.63 4.22 41.89 4.01
4090 4156 1.203052 CGCCATCACCAGAAGCAAATT 59.797 47.619 0.00 0.00 0.00 1.82
4091 4157 0.813184 CGCCATCACCAGAAGCAAAT 59.187 50.000 0.00 0.00 0.00 2.32
4094 4160 2.046023 CCGCCATCACCAGAAGCA 60.046 61.111 0.00 0.00 0.00 3.91
4120 4186 2.858644 TCCATCCCCTAATCCTGTGTT 58.141 47.619 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.