Multiple sequence alignment - TraesCS2B01G128300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G128300 chr2B 100.000 2512 0 0 1 2512 96081801 96079290 0.000000e+00 4639.0
1 TraesCS2B01G128300 chr2B 82.283 587 44 29 740 1297 96025833 96025278 1.060000e-123 453.0
2 TraesCS2B01G128300 chr2B 90.710 183 17 0 1 183 748072732 748072914 6.940000e-61 244.0
3 TraesCS2B01G128300 chr2D 88.424 1555 112 33 192 1694 61313757 61312219 0.000000e+00 1812.0
4 TraesCS2B01G128300 chr2D 87.007 431 37 16 2018 2439 61312094 61311674 3.780000e-128 468.0
5 TraesCS2B01G128300 chr2D 91.257 183 16 0 1 183 566709198 566709016 1.490000e-62 250.0
6 TraesCS2B01G128300 chr2A 90.665 857 41 15 867 1694 61804654 61803808 0.000000e+00 1103.0
7 TraesCS2B01G128300 chr2A 84.465 663 52 14 262 874 61805337 61804676 7.680000e-170 606.0
8 TraesCS2B01G128300 chr2A 86.818 440 34 11 2018 2439 61801239 61800806 1.050000e-128 470.0
9 TraesCS2B01G128300 chr2A 97.753 267 6 0 1695 1961 252088989 252088723 6.330000e-126 460.0
10 TraesCS2B01G128300 chr2A 100.000 29 0 0 225 253 61805627 61805599 1.000000e-03 54.7
11 TraesCS2B01G128300 chr3B 98.113 265 5 0 1697 1961 754259808 754259544 1.760000e-126 462.0
12 TraesCS2B01G128300 chr3B 97.037 270 8 0 1696 1965 758925791 758926060 2.950000e-124 455.0
13 TraesCS2B01G128300 chr4B 97.736 265 6 0 1696 1960 25394274 25394538 8.190000e-125 457.0
14 TraesCS2B01G128300 chrUn 97.727 264 6 0 1697 1960 32265305 32265042 2.950000e-124 455.0
15 TraesCS2B01G128300 chr5A 97.727 264 6 0 1697 1960 382088354 382088617 2.950000e-124 455.0
16 TraesCS2B01G128300 chr5B 96.377 276 9 1 1685 1960 355210595 355210869 1.060000e-123 453.0
17 TraesCS2B01G128300 chr5B 96.337 273 10 0 1696 1968 531548402 531548130 1.370000e-122 449.0
18 TraesCS2B01G128300 chr7B 96.691 272 8 1 1694 1964 296755061 296754790 3.810000e-123 451.0
19 TraesCS2B01G128300 chr1D 90.909 198 14 4 1 196 12304394 12304199 1.920000e-66 263.0
20 TraesCS2B01G128300 chr3A 91.444 187 14 2 1 185 532044324 532044138 3.210000e-64 255.0
21 TraesCS2B01G128300 chr3A 91.444 187 14 2 1 185 532095630 532095444 3.210000e-64 255.0
22 TraesCS2B01G128300 chr3A 90.556 180 17 0 4 183 463842 463663 3.230000e-59 239.0
23 TraesCS2B01G128300 chr3A 90.960 177 16 0 7 183 485469 485293 3.230000e-59 239.0
24 TraesCS2B01G128300 chr3A 90.556 180 17 0 4 183 495606 495427 3.230000e-59 239.0
25 TraesCS2B01G128300 chr5D 90.957 188 16 1 1 188 557624563 557624377 4.150000e-63 252.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G128300 chr2B 96079290 96081801 2511 True 4639.000 4639 100.0000 1 2512 1 chr2B.!!$R2 2511
1 TraesCS2B01G128300 chr2B 96025278 96025833 555 True 453.000 453 82.2830 740 1297 1 chr2B.!!$R1 557
2 TraesCS2B01G128300 chr2D 61311674 61313757 2083 True 1140.000 1812 87.7155 192 2439 2 chr2D.!!$R2 2247
3 TraesCS2B01G128300 chr2A 61800806 61805627 4821 True 558.425 1103 90.4870 225 2439 4 chr2A.!!$R2 2214

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.031857 TTCTTTTGGGCATGCGTGTG 59.968 50.0 12.44 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1946 2331 0.249363 GCGAAATACTCCCTCCGTCC 60.249 60.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.337060 GGTGGGCGCAACGGTTTC 62.337 66.667 10.83 0.00 0.00 2.78
22 23 4.676586 GTGGGCGCAACGGTTTCG 62.677 66.667 10.83 8.54 43.02 3.46
26 27 3.956317 GCGCAACGGTTTCGGGTT 61.956 61.111 14.26 0.00 41.39 4.11
27 28 2.606030 GCGCAACGGTTTCGGGTTA 61.606 57.895 14.26 0.00 41.39 2.85
28 29 1.914531 GCGCAACGGTTTCGGGTTAT 61.915 55.000 14.26 0.00 41.39 1.89
29 30 0.095762 CGCAACGGTTTCGGGTTATC 59.904 55.000 4.99 0.00 41.39 1.75
30 31 1.158434 GCAACGGTTTCGGGTTATCA 58.842 50.000 0.00 0.00 41.39 2.15
31 32 1.741145 GCAACGGTTTCGGGTTATCAT 59.259 47.619 0.00 0.00 41.39 2.45
32 33 2.223180 GCAACGGTTTCGGGTTATCATC 60.223 50.000 0.00 0.00 41.39 2.92
33 34 1.930567 ACGGTTTCGGGTTATCATCG 58.069 50.000 0.00 0.00 41.39 3.84
34 35 1.205417 ACGGTTTCGGGTTATCATCGT 59.795 47.619 0.00 0.00 41.39 3.73
35 36 2.273557 CGGTTTCGGGTTATCATCGTT 58.726 47.619 0.00 0.00 0.00 3.85
36 37 2.674357 CGGTTTCGGGTTATCATCGTTT 59.326 45.455 0.00 0.00 0.00 3.60
37 38 3.125658 CGGTTTCGGGTTATCATCGTTTT 59.874 43.478 0.00 0.00 0.00 2.43
38 39 4.655027 GGTTTCGGGTTATCATCGTTTTC 58.345 43.478 0.00 0.00 0.00 2.29
39 40 4.154556 GGTTTCGGGTTATCATCGTTTTCA 59.845 41.667 0.00 0.00 0.00 2.69
40 41 5.163693 GGTTTCGGGTTATCATCGTTTTCAT 60.164 40.000 0.00 0.00 0.00 2.57
41 42 5.728351 TTCGGGTTATCATCGTTTTCATC 57.272 39.130 0.00 0.00 0.00 2.92
42 43 3.799963 TCGGGTTATCATCGTTTTCATCG 59.200 43.478 0.00 0.00 0.00 3.84
43 44 3.799963 CGGGTTATCATCGTTTTCATCGA 59.200 43.478 0.00 0.00 41.45 3.59
44 45 4.447724 CGGGTTATCATCGTTTTCATCGAT 59.552 41.667 0.00 0.00 46.70 3.59
45 46 5.388475 CGGGTTATCATCGTTTTCATCGATC 60.388 44.000 0.00 0.00 44.49 3.69
46 47 5.107065 GGGTTATCATCGTTTTCATCGATCC 60.107 44.000 0.00 0.00 44.49 3.36
47 48 5.388475 GGTTATCATCGTTTTCATCGATCCG 60.388 44.000 0.00 0.00 44.49 4.18
48 49 3.430333 TCATCGTTTTCATCGATCCGA 57.570 42.857 0.00 0.00 44.49 4.55
49 50 3.113322 TCATCGTTTTCATCGATCCGAC 58.887 45.455 0.00 0.00 44.49 4.79
50 51 1.541475 TCGTTTTCATCGATCCGACG 58.459 50.000 0.00 4.42 39.18 5.12
51 52 0.044161 CGTTTTCATCGATCCGACGC 60.044 55.000 0.00 0.00 39.18 5.19
52 53 1.278238 GTTTTCATCGATCCGACGCT 58.722 50.000 0.00 0.00 39.18 5.07
53 54 1.005975 GTTTTCATCGATCCGACGCTG 60.006 52.381 0.00 0.00 39.18 5.18
54 55 0.172578 TTTCATCGATCCGACGCTGT 59.827 50.000 0.00 0.00 39.18 4.40
55 56 0.172578 TTCATCGATCCGACGCTGTT 59.827 50.000 0.00 0.00 39.18 3.16
56 57 0.172578 TCATCGATCCGACGCTGTTT 59.827 50.000 0.00 0.00 39.18 2.83
57 58 1.402613 TCATCGATCCGACGCTGTTTA 59.597 47.619 0.00 0.00 39.18 2.01
58 59 1.517276 CATCGATCCGACGCTGTTTAC 59.483 52.381 0.00 0.00 39.18 2.01
59 60 0.522626 TCGATCCGACGCTGTTTACA 59.477 50.000 0.00 0.00 0.00 2.41
60 61 1.133598 TCGATCCGACGCTGTTTACAT 59.866 47.619 0.00 0.00 0.00 2.29
61 62 1.924524 CGATCCGACGCTGTTTACATT 59.075 47.619 0.00 0.00 0.00 2.71
62 63 3.110358 CGATCCGACGCTGTTTACATTA 58.890 45.455 0.00 0.00 0.00 1.90
63 64 3.734231 CGATCCGACGCTGTTTACATTAT 59.266 43.478 0.00 0.00 0.00 1.28
64 65 4.208460 CGATCCGACGCTGTTTACATTATT 59.792 41.667 0.00 0.00 0.00 1.40
65 66 5.276678 CGATCCGACGCTGTTTACATTATTT 60.277 40.000 0.00 0.00 0.00 1.40
66 67 5.866335 TCCGACGCTGTTTACATTATTTT 57.134 34.783 0.00 0.00 0.00 1.82
67 68 5.860641 TCCGACGCTGTTTACATTATTTTC 58.139 37.500 0.00 0.00 0.00 2.29
68 69 5.640357 TCCGACGCTGTTTACATTATTTTCT 59.360 36.000 0.00 0.00 0.00 2.52
69 70 5.957796 CCGACGCTGTTTACATTATTTTCTC 59.042 40.000 0.00 0.00 0.00 2.87
70 71 6.183360 CCGACGCTGTTTACATTATTTTCTCT 60.183 38.462 0.00 0.00 0.00 3.10
71 72 6.895040 CGACGCTGTTTACATTATTTTCTCTC 59.105 38.462 0.00 0.00 0.00 3.20
72 73 7.201444 CGACGCTGTTTACATTATTTTCTCTCT 60.201 37.037 0.00 0.00 0.00 3.10
73 74 8.324163 ACGCTGTTTACATTATTTTCTCTCTT 57.676 30.769 0.00 0.00 0.00 2.85
74 75 8.443937 ACGCTGTTTACATTATTTTCTCTCTTC 58.556 33.333 0.00 0.00 0.00 2.87
75 76 8.660373 CGCTGTTTACATTATTTTCTCTCTTCT 58.340 33.333 0.00 0.00 0.00 2.85
90 91 9.454859 TTTCTCTCTTCTTTCTCTTTTGTTTCT 57.545 29.630 0.00 0.00 0.00 2.52
91 92 9.454859 TTCTCTCTTCTTTCTCTTTTGTTTCTT 57.545 29.630 0.00 0.00 0.00 2.52
92 93 9.454859 TCTCTCTTCTTTCTCTTTTGTTTCTTT 57.545 29.630 0.00 0.00 0.00 2.52
94 95 9.846248 TCTCTTCTTTCTCTTTTGTTTCTTTTG 57.154 29.630 0.00 0.00 0.00 2.44
95 96 8.986477 TCTTCTTTCTCTTTTGTTTCTTTTGG 57.014 30.769 0.00 0.00 0.00 3.28
96 97 8.034804 TCTTCTTTCTCTTTTGTTTCTTTTGGG 58.965 33.333 0.00 0.00 0.00 4.12
97 98 6.106003 TCTTTCTCTTTTGTTTCTTTTGGGC 58.894 36.000 0.00 0.00 0.00 5.36
98 99 5.413309 TTCTCTTTTGTTTCTTTTGGGCA 57.587 34.783 0.00 0.00 0.00 5.36
99 100 5.612725 TCTCTTTTGTTTCTTTTGGGCAT 57.387 34.783 0.00 0.00 0.00 4.40
100 101 5.358922 TCTCTTTTGTTTCTTTTGGGCATG 58.641 37.500 0.00 0.00 0.00 4.06
101 102 3.876320 TCTTTTGTTTCTTTTGGGCATGC 59.124 39.130 9.90 9.90 0.00 4.06
102 103 1.863267 TTGTTTCTTTTGGGCATGCG 58.137 45.000 12.44 0.00 0.00 4.73
103 104 0.749649 TGTTTCTTTTGGGCATGCGT 59.250 45.000 12.44 0.00 0.00 5.24
104 105 1.139163 GTTTCTTTTGGGCATGCGTG 58.861 50.000 12.44 0.09 0.00 5.34
105 106 0.749649 TTTCTTTTGGGCATGCGTGT 59.250 45.000 12.44 0.00 0.00 4.49
106 107 0.031857 TTCTTTTGGGCATGCGTGTG 59.968 50.000 12.44 0.00 0.00 3.82
107 108 2.023223 CTTTTGGGCATGCGTGTGC 61.023 57.895 12.44 3.82 44.31 4.57
108 109 2.424705 CTTTTGGGCATGCGTGTGCT 62.425 55.000 12.44 0.00 44.45 4.40
109 110 1.175347 TTTTGGGCATGCGTGTGCTA 61.175 50.000 12.44 0.00 44.45 3.49
110 111 0.964860 TTTGGGCATGCGTGTGCTAT 60.965 50.000 12.44 0.00 44.45 2.97
111 112 0.964860 TTGGGCATGCGTGTGCTATT 60.965 50.000 12.44 0.00 44.45 1.73
112 113 0.964860 TGGGCATGCGTGTGCTATTT 60.965 50.000 12.44 0.00 44.45 1.40
113 114 0.526096 GGGCATGCGTGTGCTATTTG 60.526 55.000 12.44 0.00 44.45 2.32
114 115 1.141591 GGCATGCGTGTGCTATTTGC 61.142 55.000 12.44 0.00 44.45 3.68
115 116 1.141591 GCATGCGTGTGCTATTTGCC 61.142 55.000 0.00 0.00 41.82 4.52
116 117 0.526096 CATGCGTGTGCTATTTGCCC 60.526 55.000 0.00 0.00 43.34 5.36
117 118 1.666209 ATGCGTGTGCTATTTGCCCC 61.666 55.000 0.00 0.00 43.34 5.80
118 119 2.339556 GCGTGTGCTATTTGCCCCA 61.340 57.895 0.00 0.00 42.00 4.96
119 120 1.802636 CGTGTGCTATTTGCCCCAG 59.197 57.895 0.00 0.00 42.00 4.45
120 121 1.512694 GTGTGCTATTTGCCCCAGC 59.487 57.895 0.00 0.00 42.00 4.85
129 130 4.421365 TGCCCCAGCATTGAACTC 57.579 55.556 0.00 0.00 46.52 3.01
130 131 1.769665 TGCCCCAGCATTGAACTCT 59.230 52.632 0.00 0.00 46.52 3.24
131 132 0.112995 TGCCCCAGCATTGAACTCTT 59.887 50.000 0.00 0.00 46.52 2.85
132 133 1.260544 GCCCCAGCATTGAACTCTTT 58.739 50.000 0.00 0.00 39.53 2.52
133 134 1.067354 GCCCCAGCATTGAACTCTTTG 60.067 52.381 0.00 0.00 39.53 2.77
134 135 2.242043 CCCCAGCATTGAACTCTTTGT 58.758 47.619 0.00 0.00 0.00 2.83
135 136 2.629617 CCCCAGCATTGAACTCTTTGTT 59.370 45.455 0.00 0.00 42.38 2.83
136 137 3.826157 CCCCAGCATTGAACTCTTTGTTA 59.174 43.478 0.00 0.00 39.30 2.41
137 138 4.463891 CCCCAGCATTGAACTCTTTGTTAT 59.536 41.667 0.00 0.00 39.30 1.89
138 139 5.652014 CCCCAGCATTGAACTCTTTGTTATA 59.348 40.000 0.00 0.00 39.30 0.98
139 140 6.322201 CCCCAGCATTGAACTCTTTGTTATAT 59.678 38.462 0.00 0.00 39.30 0.86
140 141 7.420800 CCCAGCATTGAACTCTTTGTTATATC 58.579 38.462 0.00 0.00 39.30 1.63
141 142 7.128331 CCAGCATTGAACTCTTTGTTATATCG 58.872 38.462 0.00 0.00 39.30 2.92
142 143 7.128331 CAGCATTGAACTCTTTGTTATATCGG 58.872 38.462 0.00 0.00 39.30 4.18
143 144 6.260936 AGCATTGAACTCTTTGTTATATCGGG 59.739 38.462 0.00 0.00 39.30 5.14
144 145 6.430451 CATTGAACTCTTTGTTATATCGGGC 58.570 40.000 0.00 0.00 39.30 6.13
145 146 5.353394 TGAACTCTTTGTTATATCGGGCT 57.647 39.130 0.00 0.00 39.30 5.19
146 147 5.116180 TGAACTCTTTGTTATATCGGGCTG 58.884 41.667 0.00 0.00 39.30 4.85
147 148 4.755266 ACTCTTTGTTATATCGGGCTGT 57.245 40.909 0.00 0.00 0.00 4.40
148 149 5.099042 ACTCTTTGTTATATCGGGCTGTT 57.901 39.130 0.00 0.00 0.00 3.16
149 150 4.876107 ACTCTTTGTTATATCGGGCTGTTG 59.124 41.667 0.00 0.00 0.00 3.33
150 151 3.625764 TCTTTGTTATATCGGGCTGTTGC 59.374 43.478 0.00 0.00 38.76 4.17
151 152 3.275617 TTGTTATATCGGGCTGTTGCT 57.724 42.857 0.00 0.00 39.59 3.91
152 153 4.409718 TTGTTATATCGGGCTGTTGCTA 57.590 40.909 0.00 0.00 39.59 3.49
153 154 4.617253 TGTTATATCGGGCTGTTGCTAT 57.383 40.909 0.00 0.00 39.59 2.97
154 155 5.731957 TGTTATATCGGGCTGTTGCTATA 57.268 39.130 0.00 0.00 39.59 1.31
155 156 6.294361 TGTTATATCGGGCTGTTGCTATAT 57.706 37.500 0.00 0.00 39.59 0.86
156 157 6.338146 TGTTATATCGGGCTGTTGCTATATC 58.662 40.000 0.00 0.00 39.59 1.63
157 158 6.154534 TGTTATATCGGGCTGTTGCTATATCT 59.845 38.462 0.00 0.00 39.59 1.98
158 159 7.340999 TGTTATATCGGGCTGTTGCTATATCTA 59.659 37.037 0.00 0.00 39.59 1.98
159 160 6.985653 ATATCGGGCTGTTGCTATATCTAT 57.014 37.500 0.00 0.00 39.59 1.98
160 161 9.582648 TTATATCGGGCTGTTGCTATATCTATA 57.417 33.333 0.00 0.00 39.59 1.31
161 162 6.985653 ATCGGGCTGTTGCTATATCTATAT 57.014 37.500 0.00 0.00 39.59 0.86
162 163 9.755122 ATATCGGGCTGTTGCTATATCTATATA 57.245 33.333 0.00 0.00 39.59 0.86
163 164 7.511959 TCGGGCTGTTGCTATATCTATATAG 57.488 40.000 11.20 11.20 43.16 1.31
219 220 5.011125 ACGAGTAATCATACATCCCTCTTGG 59.989 44.000 0.00 0.00 34.29 3.61
256 257 3.371898 TGAAGCATCTCGCATTGTACAAG 59.628 43.478 14.65 7.46 46.13 3.16
258 259 2.009774 GCATCTCGCATTGTACAAGGT 58.990 47.619 20.31 0.00 41.79 3.50
259 260 2.223112 GCATCTCGCATTGTACAAGGTG 60.223 50.000 23.94 23.94 41.79 4.00
271 525 2.335316 ACAAGGTGTAAGCAAACCGA 57.665 45.000 0.00 0.00 41.61 4.69
273 527 2.616842 ACAAGGTGTAAGCAAACCGAAG 59.383 45.455 0.00 0.00 41.61 3.79
295 549 2.623878 TTTGCTCACGGTCCAGTTTA 57.376 45.000 0.00 0.00 0.00 2.01
296 550 2.163818 TTGCTCACGGTCCAGTTTAG 57.836 50.000 0.00 0.00 0.00 1.85
298 552 1.019805 GCTCACGGTCCAGTTTAGGC 61.020 60.000 0.00 0.00 0.00 3.93
299 553 0.736325 CTCACGGTCCAGTTTAGGCG 60.736 60.000 0.00 0.00 0.00 5.52
302 556 1.004200 CGGTCCAGTTTAGGCGGTT 60.004 57.895 0.00 0.00 0.00 4.44
303 557 1.296056 CGGTCCAGTTTAGGCGGTTG 61.296 60.000 0.00 0.00 0.00 3.77
304 558 0.250597 GGTCCAGTTTAGGCGGTTGT 60.251 55.000 0.00 0.00 0.00 3.32
305 559 1.154197 GTCCAGTTTAGGCGGTTGTC 58.846 55.000 0.00 0.00 0.00 3.18
339 598 6.722301 TGTAACTATGTGCTACGTACATCTC 58.278 40.000 5.73 0.00 39.40 2.75
445 707 0.036732 TCTGGCCTGCCTTACTGTTG 59.963 55.000 9.97 0.00 36.94 3.33
446 708 0.962356 CTGGCCTGCCTTACTGTTGG 60.962 60.000 9.97 0.00 36.94 3.77
463 725 0.546122 TGGCTCGCAAGTGGGAATAT 59.454 50.000 0.00 0.00 36.54 1.28
465 727 2.371841 TGGCTCGCAAGTGGGAATATAT 59.628 45.455 0.00 0.00 36.54 0.86
467 729 4.041075 TGGCTCGCAAGTGGGAATATATAA 59.959 41.667 0.00 0.00 36.54 0.98
468 730 5.001232 GGCTCGCAAGTGGGAATATATAAA 58.999 41.667 0.00 0.00 36.54 1.40
469 731 5.122396 GGCTCGCAAGTGGGAATATATAAAG 59.878 44.000 0.00 0.00 36.54 1.85
489 763 2.798976 GCTCGATCAGCTCATTCTCT 57.201 50.000 9.16 0.00 45.83 3.10
512 787 1.005037 TGCCAGCTACTGACCGTTG 60.005 57.895 0.00 0.00 32.44 4.10
564 839 3.386379 CGAGAGCTCGTCGAACTTT 57.614 52.632 22.93 0.00 46.99 2.66
565 840 0.978385 CGAGAGCTCGTCGAACTTTG 59.022 55.000 22.93 0.00 46.99 2.77
580 858 2.643551 ACTTTGTGATGGCGGGATAAG 58.356 47.619 0.00 0.00 0.00 1.73
635 917 3.485877 CGATCCAGCATTTCCGTTTCTTC 60.486 47.826 0.00 0.00 0.00 2.87
650 932 4.381411 GTTTCTTCTCCACAGCACTAAGT 58.619 43.478 0.00 0.00 0.00 2.24
765 1048 5.181433 AGAAAAGCGTAAAGGTTCTTCATCC 59.819 40.000 0.00 0.00 40.06 3.51
797 1103 3.546670 CGATCTTTGTAACACTACTCCGC 59.453 47.826 0.00 0.00 0.00 5.54
808 1114 3.753272 ACACTACTCCGCGTAGAAGTTTA 59.247 43.478 5.42 0.00 46.98 2.01
815 1122 3.192001 TCCGCGTAGAAGTTTATCAGTGT 59.808 43.478 4.92 0.00 0.00 3.55
836 1143 5.005740 TGTCAGAAGATTTTCATGACTGGG 58.994 41.667 19.53 0.00 39.51 4.45
858 1167 5.114081 GGCAAGACTAATTAAAGCGAGGTA 58.886 41.667 0.00 0.00 0.00 3.08
913 1250 5.182570 GGTTAAAATTAAGAGGACGCTGGTT 59.817 40.000 0.00 0.00 0.00 3.67
984 1344 1.277557 AGCCAGACGAATCAAAGCTCT 59.722 47.619 0.00 0.00 0.00 4.09
985 1345 1.663135 GCCAGACGAATCAAAGCTCTC 59.337 52.381 0.00 0.00 0.00 3.20
1122 1482 1.078497 CAACACCGGCAGCCTCATA 60.078 57.895 10.54 0.00 0.00 2.15
1174 1539 0.804544 GTACGCTACGCATGCCTTGA 60.805 55.000 13.15 0.00 0.00 3.02
1175 1540 0.104120 TACGCTACGCATGCCTTGAT 59.896 50.000 13.15 0.00 0.00 2.57
1176 1541 1.277739 CGCTACGCATGCCTTGATG 59.722 57.895 13.15 0.00 0.00 3.07
1194 1560 2.839486 TGTTCCTGAATCTTGCGACT 57.161 45.000 0.00 0.00 0.00 4.18
1207 1573 3.015293 GCGACTGCGACACACATGG 62.015 63.158 0.00 0.00 40.82 3.66
1208 1574 2.863153 GACTGCGACACACATGGC 59.137 61.111 0.00 0.00 0.00 4.40
1209 1575 1.960763 GACTGCGACACACATGGCA 60.961 57.895 0.00 0.00 30.51 4.92
1210 1576 1.300971 GACTGCGACACACATGGCAT 61.301 55.000 0.00 0.00 34.49 4.40
1304 1681 2.888998 GACGACCAACACCAACGGC 61.889 63.158 0.00 0.00 0.00 5.68
1400 1777 2.691522 CTCATCAAGTGCGACGCG 59.308 61.111 16.14 3.53 0.00 6.01
1487 1864 3.665675 CTTCCACCTCTTCCCCGCG 62.666 68.421 0.00 0.00 0.00 6.46
1528 1905 5.581085 GCCGATGAAATTAGTAGTTCACTGT 59.419 40.000 1.60 0.00 40.71 3.55
1571 1948 5.822132 AGCATACTGAGATCTGGCTAATT 57.178 39.130 0.00 0.00 0.00 1.40
1608 1993 8.825745 TCTTTAGTTTGGTTTGAAATGAAATGC 58.174 29.630 0.00 0.00 0.00 3.56
1610 1995 6.998968 AGTTTGGTTTGAAATGAAATGCAA 57.001 29.167 0.00 0.00 0.00 4.08
1619 2004 5.851720 TGAAATGAAATGCAAGGCAAGTTA 58.148 33.333 0.00 0.00 43.62 2.24
1694 2079 6.894339 TGAGCAACTGGATAGATAATCGTA 57.106 37.500 0.00 0.00 35.21 3.43
1695 2080 6.914259 TGAGCAACTGGATAGATAATCGTAG 58.086 40.000 0.00 0.00 35.21 3.51
1696 2081 6.490381 TGAGCAACTGGATAGATAATCGTAGT 59.510 38.462 0.00 0.00 35.43 2.73
1697 2082 7.664318 TGAGCAACTGGATAGATAATCGTAGTA 59.336 37.037 0.00 0.00 33.83 1.82
1699 2084 7.666388 AGCAACTGGATAGATAATCGTAGTACT 59.334 37.037 0.00 0.00 33.83 2.73
1700 2085 7.964011 GCAACTGGATAGATAATCGTAGTACTC 59.036 40.741 0.00 0.00 33.83 2.59
1701 2086 8.452534 CAACTGGATAGATAATCGTAGTACTCC 58.547 40.741 0.00 0.00 33.83 3.85
1702 2087 7.111466 ACTGGATAGATAATCGTAGTACTCCC 58.889 42.308 0.00 0.00 33.44 4.30
1703 2088 7.037442 ACTGGATAGATAATCGTAGTACTCCCT 60.037 40.741 0.00 0.00 33.44 4.20
1705 2090 6.767423 GGATAGATAATCGTAGTACTCCCTCC 59.233 46.154 0.00 0.00 35.21 4.30
1706 2091 4.577875 AGATAATCGTAGTACTCCCTCCG 58.422 47.826 0.00 0.00 0.00 4.63
1707 2092 2.725221 AATCGTAGTACTCCCTCCGT 57.275 50.000 0.00 0.00 0.00 4.69
1709 2094 0.179000 TCGTAGTACTCCCTCCGTCC 59.821 60.000 0.00 0.00 0.00 4.79
1710 2095 0.179936 CGTAGTACTCCCTCCGTCCT 59.820 60.000 0.00 0.00 0.00 3.85
1711 2096 1.407989 CGTAGTACTCCCTCCGTCCTT 60.408 57.143 0.00 0.00 0.00 3.36
1713 2098 3.682718 CGTAGTACTCCCTCCGTCCTTTA 60.683 52.174 0.00 0.00 0.00 1.85
1714 2099 3.463048 AGTACTCCCTCCGTCCTTTAA 57.537 47.619 0.00 0.00 0.00 1.52
1715 2100 3.782992 AGTACTCCCTCCGTCCTTTAAA 58.217 45.455 0.00 0.00 0.00 1.52
1716 2101 3.768215 AGTACTCCCTCCGTCCTTTAAAG 59.232 47.826 8.32 8.32 0.00 1.85
1717 2102 2.898662 ACTCCCTCCGTCCTTTAAAGA 58.101 47.619 16.98 0.24 0.00 2.52
1718 2103 2.832733 ACTCCCTCCGTCCTTTAAAGAG 59.167 50.000 16.98 7.03 0.00 2.85
1719 2104 2.832733 CTCCCTCCGTCCTTTAAAGAGT 59.167 50.000 16.98 0.00 0.00 3.24
1720 2105 2.565834 TCCCTCCGTCCTTTAAAGAGTG 59.434 50.000 16.98 5.33 0.00 3.51
1721 2106 2.302157 CCCTCCGTCCTTTAAAGAGTGT 59.698 50.000 16.98 0.00 0.00 3.55
1723 2108 4.492611 CCTCCGTCCTTTAAAGAGTGTAC 58.507 47.826 16.98 5.84 0.00 2.90
1724 2109 4.220163 CCTCCGTCCTTTAAAGAGTGTACT 59.780 45.833 16.98 0.00 0.00 2.73
1726 2111 5.776744 TCCGTCCTTTAAAGAGTGTACTTC 58.223 41.667 16.98 0.00 0.00 3.01
1727 2112 4.928020 CCGTCCTTTAAAGAGTGTACTTCC 59.072 45.833 16.98 0.00 0.00 3.46
1728 2113 5.510179 CCGTCCTTTAAAGAGTGTACTTCCA 60.510 44.000 16.98 0.00 0.00 3.53
1729 2114 5.987347 CGTCCTTTAAAGAGTGTACTTCCAA 59.013 40.000 16.98 0.00 0.00 3.53
1730 2115 6.073927 CGTCCTTTAAAGAGTGTACTTCCAAC 60.074 42.308 16.98 0.00 0.00 3.77
1731 2116 6.990939 GTCCTTTAAAGAGTGTACTTCCAACT 59.009 38.462 16.98 0.00 0.00 3.16
1732 2117 7.498239 GTCCTTTAAAGAGTGTACTTCCAACTT 59.502 37.037 16.98 0.00 0.00 2.66
1733 2118 8.050930 TCCTTTAAAGAGTGTACTTCCAACTTT 58.949 33.333 16.98 0.00 32.26 2.66
1734 2119 8.129211 CCTTTAAAGAGTGTACTTCCAACTTTG 58.871 37.037 16.98 0.00 31.02 2.77
1735 2120 8.570068 TTTAAAGAGTGTACTTCCAACTTTGT 57.430 30.769 0.00 0.00 31.02 2.83
1736 2121 8.570068 TTAAAGAGTGTACTTCCAACTTTGTT 57.430 30.769 0.00 0.00 31.02 2.83
1737 2122 6.436843 AAGAGTGTACTTCCAACTTTGTTG 57.563 37.500 3.69 3.69 0.00 3.33
1738 2123 4.881850 AGAGTGTACTTCCAACTTTGTTGG 59.118 41.667 19.97 19.97 40.87 3.77
1744 2129 2.358322 TCCAACTTTGTTGGAGGGTC 57.642 50.000 23.38 0.00 43.17 4.46
1745 2130 1.566703 TCCAACTTTGTTGGAGGGTCA 59.433 47.619 23.38 5.39 43.17 4.02
1746 2131 2.024846 TCCAACTTTGTTGGAGGGTCAA 60.025 45.455 23.38 4.76 43.17 3.18
1747 2132 2.763448 CCAACTTTGTTGGAGGGTCAAA 59.237 45.455 21.06 0.00 42.06 2.69
1748 2133 3.430236 CCAACTTTGTTGGAGGGTCAAAC 60.430 47.826 21.06 0.00 42.06 2.93
1749 2134 3.382083 ACTTTGTTGGAGGGTCAAACT 57.618 42.857 0.00 0.00 0.00 2.66
1750 2135 4.513406 ACTTTGTTGGAGGGTCAAACTA 57.487 40.909 0.00 0.00 0.00 2.24
1751 2136 5.061721 ACTTTGTTGGAGGGTCAAACTAT 57.938 39.130 0.00 0.00 0.00 2.12
1752 2137 5.070685 ACTTTGTTGGAGGGTCAAACTATC 58.929 41.667 0.00 0.00 0.00 2.08
1753 2138 4.993705 TTGTTGGAGGGTCAAACTATCT 57.006 40.909 0.00 0.00 0.00 1.98
1754 2139 4.553330 TGTTGGAGGGTCAAACTATCTC 57.447 45.455 0.00 0.00 0.00 2.75
1755 2140 3.907474 TGTTGGAGGGTCAAACTATCTCA 59.093 43.478 0.00 0.00 0.00 3.27
1756 2141 4.349636 TGTTGGAGGGTCAAACTATCTCAA 59.650 41.667 0.00 0.00 0.00 3.02
1757 2142 5.163141 TGTTGGAGGGTCAAACTATCTCAAA 60.163 40.000 0.00 0.00 0.00 2.69
1758 2143 5.165961 TGGAGGGTCAAACTATCTCAAAG 57.834 43.478 0.00 0.00 0.00 2.77
1759 2144 4.597507 TGGAGGGTCAAACTATCTCAAAGT 59.402 41.667 0.00 0.00 0.00 2.66
1760 2145 5.073144 TGGAGGGTCAAACTATCTCAAAGTT 59.927 40.000 0.00 0.00 38.82 2.66
1761 2146 6.004574 GGAGGGTCAAACTATCTCAAAGTTT 58.995 40.000 0.00 0.00 45.64 2.66
1768 2153 6.787085 AAACTATCTCAAAGTTTGACCGAG 57.213 37.500 14.35 12.69 43.66 4.63
1769 2154 5.470047 ACTATCTCAAAGTTTGACCGAGT 57.530 39.130 14.35 13.26 35.46 4.18
1770 2155 5.855045 ACTATCTCAAAGTTTGACCGAGTT 58.145 37.500 14.35 3.34 35.46 3.01
1771 2156 6.289064 ACTATCTCAAAGTTTGACCGAGTTT 58.711 36.000 14.35 0.45 35.46 2.66
1772 2157 4.875544 TCTCAAAGTTTGACCGAGTTTG 57.124 40.909 14.35 2.86 38.28 2.93
1773 2158 4.258543 TCTCAAAGTTTGACCGAGTTTGT 58.741 39.130 14.35 0.00 38.17 2.83
1774 2159 4.094294 TCTCAAAGTTTGACCGAGTTTGTG 59.906 41.667 14.35 1.47 38.17 3.33
1775 2160 2.844122 AAGTTTGACCGAGTTTGTGC 57.156 45.000 0.00 0.00 0.00 4.57
1776 2161 1.745232 AGTTTGACCGAGTTTGTGCA 58.255 45.000 0.00 0.00 0.00 4.57
1777 2162 2.088423 AGTTTGACCGAGTTTGTGCAA 58.912 42.857 0.00 0.00 0.00 4.08
1778 2163 2.490115 AGTTTGACCGAGTTTGTGCAAA 59.510 40.909 0.00 0.00 0.00 3.68
1779 2164 3.057174 AGTTTGACCGAGTTTGTGCAAAA 60.057 39.130 0.00 0.00 31.33 2.44
1780 2165 3.577649 TTGACCGAGTTTGTGCAAAAA 57.422 38.095 0.00 0.00 31.33 1.94
1781 2166 3.791973 TGACCGAGTTTGTGCAAAAAT 57.208 38.095 5.11 0.00 31.33 1.82
1782 2167 4.902443 TGACCGAGTTTGTGCAAAAATA 57.098 36.364 5.11 0.00 31.33 1.40
1783 2168 5.446143 TGACCGAGTTTGTGCAAAAATAT 57.554 34.783 5.11 0.00 31.33 1.28
1784 2169 6.561737 TGACCGAGTTTGTGCAAAAATATA 57.438 33.333 5.11 0.00 31.33 0.86
1785 2170 7.151999 TGACCGAGTTTGTGCAAAAATATAT 57.848 32.000 5.11 0.00 31.33 0.86
1786 2171 7.247728 TGACCGAGTTTGTGCAAAAATATATC 58.752 34.615 5.11 1.66 31.33 1.63
1787 2172 7.094592 TGACCGAGTTTGTGCAAAAATATATCA 60.095 33.333 5.11 4.10 31.33 2.15
1788 2173 7.598278 ACCGAGTTTGTGCAAAAATATATCAA 58.402 30.769 5.11 0.00 31.33 2.57
1789 2174 8.250332 ACCGAGTTTGTGCAAAAATATATCAAT 58.750 29.630 5.11 0.00 31.33 2.57
1790 2175 8.533965 CCGAGTTTGTGCAAAAATATATCAATG 58.466 33.333 5.11 0.00 31.33 2.82
1791 2176 9.075519 CGAGTTTGTGCAAAAATATATCAATGT 57.924 29.630 5.11 0.00 31.33 2.71
1797 2182 9.702494 TGTGCAAAAATATATCAATGTTTGTGA 57.298 25.926 0.00 0.00 34.81 3.58
1860 2245 9.599322 CGAATCTAATGTTACTAATTTGATGGC 57.401 33.333 0.00 0.00 32.33 4.40
1873 2258 9.537192 ACTAATTTGATGGCATAAATGTTGATG 57.463 29.630 0.00 0.00 0.00 3.07
1874 2259 9.537192 CTAATTTGATGGCATAAATGTTGATGT 57.463 29.630 0.00 0.00 0.00 3.06
1876 2261 8.876275 ATTTGATGGCATAAATGTTGATGTAC 57.124 30.769 0.00 0.00 0.00 2.90
1877 2262 7.643569 TTGATGGCATAAATGTTGATGTACT 57.356 32.000 0.00 0.00 0.00 2.73
1878 2263 8.744568 TTGATGGCATAAATGTTGATGTACTA 57.255 30.769 0.00 0.00 0.00 1.82
1879 2264 8.922931 TGATGGCATAAATGTTGATGTACTAT 57.077 30.769 0.00 0.00 0.00 2.12
1880 2265 9.353431 TGATGGCATAAATGTTGATGTACTATT 57.647 29.630 0.00 0.00 0.00 1.73
1927 2312 8.902540 AAAAAGTTTGACTTTCCAAGAAAGTT 57.097 26.923 20.38 7.70 46.78 2.66
1928 2313 7.889589 AAAGTTTGACTTTCCAAGAAAGTTG 57.110 32.000 20.38 0.00 44.47 3.16
1929 2314 5.965922 AGTTTGACTTTCCAAGAAAGTTGG 58.034 37.500 20.38 6.05 40.27 3.77
1930 2315 5.714806 AGTTTGACTTTCCAAGAAAGTTGGA 59.285 36.000 20.38 8.42 46.08 3.53
1938 2323 5.367945 TCCAAGAAAGTTGGAAGTACACT 57.632 39.130 3.95 0.00 44.90 3.55
1939 2324 5.365619 TCCAAGAAAGTTGGAAGTACACTC 58.634 41.667 3.95 0.00 44.90 3.51
1940 2325 5.130477 TCCAAGAAAGTTGGAAGTACACTCT 59.870 40.000 3.95 0.00 44.90 3.24
1941 2326 5.823045 CCAAGAAAGTTGGAAGTACACTCTT 59.177 40.000 0.00 0.00 42.06 2.85
1942 2327 6.318900 CCAAGAAAGTTGGAAGTACACTCTTT 59.681 38.462 0.00 0.00 42.06 2.52
1943 2328 7.497909 CCAAGAAAGTTGGAAGTACACTCTTTA 59.502 37.037 0.00 0.00 42.06 1.85
1944 2329 8.889717 CAAGAAAGTTGGAAGTACACTCTTTAA 58.110 33.333 0.00 0.00 30.46 1.52
1945 2330 9.457436 AAGAAAGTTGGAAGTACACTCTTTAAA 57.543 29.630 0.00 0.00 30.46 1.52
1946 2331 9.110502 AGAAAGTTGGAAGTACACTCTTTAAAG 57.889 33.333 9.04 9.04 30.46 1.85
1947 2332 7.803279 AAGTTGGAAGTACACTCTTTAAAGG 57.197 36.000 15.13 8.48 0.00 3.11
1948 2333 7.133133 AGTTGGAAGTACACTCTTTAAAGGA 57.867 36.000 15.13 1.82 0.00 3.36
1949 2334 6.990939 AGTTGGAAGTACACTCTTTAAAGGAC 59.009 38.462 15.13 6.27 0.00 3.85
1950 2335 5.535333 TGGAAGTACACTCTTTAAAGGACG 58.465 41.667 15.13 6.90 0.00 4.79
1951 2336 4.928020 GGAAGTACACTCTTTAAAGGACGG 59.072 45.833 15.13 5.64 0.00 4.79
1952 2337 5.279156 GGAAGTACACTCTTTAAAGGACGGA 60.279 44.000 15.13 0.00 0.00 4.69
1953 2338 5.388408 AGTACACTCTTTAAAGGACGGAG 57.612 43.478 15.13 7.51 0.00 4.63
1954 2339 3.679824 ACACTCTTTAAAGGACGGAGG 57.320 47.619 15.13 2.85 0.00 4.30
1955 2340 2.302157 ACACTCTTTAAAGGACGGAGGG 59.698 50.000 15.13 8.51 34.07 4.30
1956 2341 2.565834 CACTCTTTAAAGGACGGAGGGA 59.434 50.000 15.13 0.00 29.82 4.20
1965 2588 0.249363 GGACGGAGGGAGTATTTCGC 60.249 60.000 0.00 0.00 38.95 4.70
1983 2606 1.468054 CGCAAATCTGGGTGCTAAAGC 60.468 52.381 0.00 0.00 38.66 3.51
2001 4837 0.462759 GCTCTAAGCCGGCATTGACT 60.463 55.000 31.54 2.66 34.48 3.41
2059 4910 4.995487 GTCTTCCAAAGTGTAACGATCCTT 59.005 41.667 0.00 0.00 45.86 3.36
2061 4912 6.017357 GTCTTCCAAAGTGTAACGATCCTTTT 60.017 38.462 0.00 0.00 45.86 2.27
2082 4933 8.665685 CCTTTTGAGTATAAAGCACGTCTAATT 58.334 33.333 0.00 0.00 0.00 1.40
2108 4959 0.890996 CTTGTCCCTCGCCTTGCTTT 60.891 55.000 0.00 0.00 0.00 3.51
2112 4963 0.392998 TCCCTCGCCTTGCTTTCATC 60.393 55.000 0.00 0.00 0.00 2.92
2113 4964 1.709147 CCCTCGCCTTGCTTTCATCG 61.709 60.000 0.00 0.00 0.00 3.84
2126 4977 5.610398 TGCTTTCATCGCAATCCTCTAATA 58.390 37.500 0.00 0.00 33.87 0.98
2162 5016 6.529125 CAGATTCGTTAACGTTAGTGGTGTAT 59.471 38.462 25.98 6.73 40.80 2.29
2163 5017 7.697710 CAGATTCGTTAACGTTAGTGGTGTATA 59.302 37.037 25.98 0.51 40.80 1.47
2192 5062 3.303881 TGATGTACACAGTGACAGCTC 57.696 47.619 7.81 4.13 33.17 4.09
2319 5193 3.537580 CGCCCATGCCTAACTTTAGTTA 58.462 45.455 2.63 2.63 39.31 2.24
2340 5214 8.749026 AGTTATGCTTTTCATCATCTCATCTT 57.251 30.769 0.00 0.00 36.63 2.40
2342 5216 8.838365 GTTATGCTTTTCATCATCTCATCTTCT 58.162 33.333 0.00 0.00 36.63 2.85
2366 5240 2.423538 GGCTTGACCAATACATCCACAC 59.576 50.000 0.00 0.00 38.86 3.82
2390 5264 1.083242 CCGCGGCAAAATGGAAATGG 61.083 55.000 14.67 0.00 0.00 3.16
2392 5266 1.358877 GCGGCAAAATGGAAATGGAC 58.641 50.000 0.00 0.00 0.00 4.02
2395 5269 2.674747 CGGCAAAATGGAAATGGACCAG 60.675 50.000 0.00 0.00 40.89 4.00
2407 5281 0.400213 TGGACCAGTTGCAAGGGTAG 59.600 55.000 19.73 2.12 34.39 3.18
2410 5284 1.678970 CCAGTTGCAAGGGTAGCCC 60.679 63.158 7.51 0.00 45.90 5.19
2424 5300 4.729868 GGGTAGCCCATCTTCAAATACAT 58.270 43.478 0.00 0.00 44.65 2.29
2425 5301 5.140454 GGGTAGCCCATCTTCAAATACATT 58.860 41.667 0.00 0.00 44.65 2.71
2449 5325 9.745880 ATTATAAGGTGACTAACAACATCTACG 57.254 33.333 0.00 0.00 42.68 3.51
2450 5326 4.451629 AGGTGACTAACAACATCTACGG 57.548 45.455 0.00 0.00 40.61 4.02
2451 5327 2.928116 GGTGACTAACAACATCTACGGC 59.072 50.000 0.00 0.00 36.04 5.68
2452 5328 2.928116 GTGACTAACAACATCTACGGCC 59.072 50.000 0.00 0.00 0.00 6.13
2453 5329 2.190981 GACTAACAACATCTACGGCCG 58.809 52.381 26.86 26.86 0.00 6.13
2454 5330 1.134907 ACTAACAACATCTACGGCCGG 60.135 52.381 31.76 13.23 0.00 6.13
2455 5331 1.135527 CTAACAACATCTACGGCCGGA 59.864 52.381 31.76 22.81 0.00 5.14
2456 5332 0.539986 AACAACATCTACGGCCGGAT 59.460 50.000 31.76 20.41 0.00 4.18
2457 5333 0.539986 ACAACATCTACGGCCGGATT 59.460 50.000 31.76 9.53 0.00 3.01
2458 5334 1.065709 ACAACATCTACGGCCGGATTT 60.066 47.619 31.76 13.58 0.00 2.17
2459 5335 1.330521 CAACATCTACGGCCGGATTTG 59.669 52.381 31.76 22.86 0.00 2.32
2460 5336 0.179056 ACATCTACGGCCGGATTTGG 60.179 55.000 31.76 16.27 0.00 3.28
2470 5346 2.278026 CCGGATTTGGCAAGTTAAGC 57.722 50.000 0.00 0.00 0.00 3.09
2481 5357 4.411993 GCAAGTTAAGCCTCTCAAACTC 57.588 45.455 0.00 0.00 31.15 3.01
2482 5358 3.189495 GCAAGTTAAGCCTCTCAAACTCC 59.811 47.826 0.00 0.00 31.15 3.85
2483 5359 3.704800 AGTTAAGCCTCTCAAACTCCC 57.295 47.619 0.00 0.00 0.00 4.30
2484 5360 2.028020 AGTTAAGCCTCTCAAACTCCCG 60.028 50.000 0.00 0.00 0.00 5.14
2485 5361 0.249398 TAAGCCTCTCAAACTCCCGC 59.751 55.000 0.00 0.00 0.00 6.13
2486 5362 2.788191 AAGCCTCTCAAACTCCCGCG 62.788 60.000 0.00 0.00 0.00 6.46
2487 5363 2.125512 CCTCTCAAACTCCCGCGG 60.126 66.667 21.04 21.04 0.00 6.46
2488 5364 2.125512 CTCTCAAACTCCCGCGGG 60.126 66.667 39.13 39.13 0.00 6.13
2489 5365 4.388499 TCTCAAACTCCCGCGGGC 62.388 66.667 39.89 0.00 34.68 6.13
2490 5366 4.697756 CTCAAACTCCCGCGGGCA 62.698 66.667 39.89 25.76 34.68 5.36
2502 5378 3.055719 CGGGCACGCCTTCACAAT 61.056 61.111 8.20 0.00 36.10 2.71
2503 5379 2.877691 GGGCACGCCTTCACAATC 59.122 61.111 8.20 0.00 36.10 2.67
2504 5380 2.480555 GGCACGCCTTCACAATCG 59.519 61.111 0.00 0.00 0.00 3.34
2505 5381 2.325082 GGCACGCCTTCACAATCGT 61.325 57.895 0.00 0.00 35.35 3.73
2506 5382 1.017177 GGCACGCCTTCACAATCGTA 61.017 55.000 0.00 0.00 33.51 3.43
2507 5383 0.094730 GCACGCCTTCACAATCGTAC 59.905 55.000 0.00 0.00 33.51 3.67
2508 5384 1.424403 CACGCCTTCACAATCGTACA 58.576 50.000 0.00 0.00 33.51 2.90
2509 5385 1.999735 CACGCCTTCACAATCGTACAT 59.000 47.619 0.00 0.00 33.51 2.29
2510 5386 2.029244 CACGCCTTCACAATCGTACATC 59.971 50.000 0.00 0.00 33.51 3.06
2511 5387 2.094182 ACGCCTTCACAATCGTACATCT 60.094 45.455 0.00 0.00 33.02 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.337060 GAAACCGTTGCGCCCACC 62.337 66.667 4.18 0.00 0.00 4.61
5 6 4.676586 CGAAACCGTTGCGCCCAC 62.677 66.667 4.18 0.00 0.00 4.61
9 10 1.914531 ATAACCCGAAACCGTTGCGC 61.915 55.000 6.09 0.00 0.00 6.09
10 11 0.095762 GATAACCCGAAACCGTTGCG 59.904 55.000 4.51 4.51 0.00 4.85
11 12 1.158434 TGATAACCCGAAACCGTTGC 58.842 50.000 0.00 0.00 0.00 4.17
12 13 2.029970 CGATGATAACCCGAAACCGTTG 59.970 50.000 0.00 0.00 0.00 4.10
13 14 2.273557 CGATGATAACCCGAAACCGTT 58.726 47.619 0.00 0.00 0.00 4.44
14 15 1.205417 ACGATGATAACCCGAAACCGT 59.795 47.619 0.00 0.00 0.00 4.83
15 16 1.930567 ACGATGATAACCCGAAACCG 58.069 50.000 0.00 0.00 0.00 4.44
16 17 4.154556 TGAAAACGATGATAACCCGAAACC 59.845 41.667 0.00 0.00 0.00 3.27
17 18 5.285798 TGAAAACGATGATAACCCGAAAC 57.714 39.130 0.00 0.00 0.00 2.78
18 19 5.220510 CGATGAAAACGATGATAACCCGAAA 60.221 40.000 0.00 0.00 31.90 3.46
19 20 4.269123 CGATGAAAACGATGATAACCCGAA 59.731 41.667 0.00 0.00 31.90 4.30
20 21 3.799963 CGATGAAAACGATGATAACCCGA 59.200 43.478 0.00 0.00 31.90 5.14
21 22 3.799963 TCGATGAAAACGATGATAACCCG 59.200 43.478 0.00 0.00 35.75 5.28
32 33 0.044161 GCGTCGGATCGATGAAAACG 60.044 55.000 0.54 8.65 44.49 3.60
33 34 1.278238 AGCGTCGGATCGATGAAAAC 58.722 50.000 0.54 0.00 44.49 2.43
34 35 3.733236 AGCGTCGGATCGATGAAAA 57.267 47.368 0.54 0.00 44.49 2.29
39 40 1.133598 TGTAAACAGCGTCGGATCGAT 59.866 47.619 0.00 0.00 38.42 3.59
40 41 0.522626 TGTAAACAGCGTCGGATCGA 59.477 50.000 0.00 0.00 0.00 3.59
41 42 1.556564 ATGTAAACAGCGTCGGATCG 58.443 50.000 0.00 0.00 0.00 3.69
42 43 5.652744 AATAATGTAAACAGCGTCGGATC 57.347 39.130 0.00 0.00 0.00 3.36
43 44 6.315393 AGAAAATAATGTAAACAGCGTCGGAT 59.685 34.615 0.00 0.00 0.00 4.18
44 45 5.640357 AGAAAATAATGTAAACAGCGTCGGA 59.360 36.000 0.00 0.00 0.00 4.55
45 46 5.864986 AGAAAATAATGTAAACAGCGTCGG 58.135 37.500 0.00 0.00 0.00 4.79
46 47 6.762108 AGAGAAAATAATGTAAACAGCGTCG 58.238 36.000 0.00 0.00 0.00 5.12
47 48 7.965045 AGAGAGAAAATAATGTAAACAGCGTC 58.035 34.615 0.00 0.00 0.00 5.19
48 49 7.907214 AGAGAGAAAATAATGTAAACAGCGT 57.093 32.000 0.00 0.00 0.00 5.07
49 50 8.660373 AGAAGAGAGAAAATAATGTAAACAGCG 58.340 33.333 0.00 0.00 0.00 5.18
64 65 9.454859 AGAAACAAAAGAGAAAGAAGAGAGAAA 57.545 29.630 0.00 0.00 0.00 2.52
65 66 9.454859 AAGAAACAAAAGAGAAAGAAGAGAGAA 57.545 29.630 0.00 0.00 0.00 2.87
66 67 9.454859 AAAGAAACAAAAGAGAAAGAAGAGAGA 57.545 29.630 0.00 0.00 0.00 3.10
68 69 9.846248 CAAAAGAAACAAAAGAGAAAGAAGAGA 57.154 29.630 0.00 0.00 0.00 3.10
69 70 9.080915 CCAAAAGAAACAAAAGAGAAAGAAGAG 57.919 33.333 0.00 0.00 0.00 2.85
70 71 8.034804 CCCAAAAGAAACAAAAGAGAAAGAAGA 58.965 33.333 0.00 0.00 0.00 2.87
71 72 7.201556 GCCCAAAAGAAACAAAAGAGAAAGAAG 60.202 37.037 0.00 0.00 0.00 2.85
72 73 6.593770 GCCCAAAAGAAACAAAAGAGAAAGAA 59.406 34.615 0.00 0.00 0.00 2.52
73 74 6.106003 GCCCAAAAGAAACAAAAGAGAAAGA 58.894 36.000 0.00 0.00 0.00 2.52
74 75 5.874261 TGCCCAAAAGAAACAAAAGAGAAAG 59.126 36.000 0.00 0.00 0.00 2.62
75 76 5.799213 TGCCCAAAAGAAACAAAAGAGAAA 58.201 33.333 0.00 0.00 0.00 2.52
76 77 5.413309 TGCCCAAAAGAAACAAAAGAGAA 57.587 34.783 0.00 0.00 0.00 2.87
77 78 5.358922 CATGCCCAAAAGAAACAAAAGAGA 58.641 37.500 0.00 0.00 0.00 3.10
78 79 4.024641 GCATGCCCAAAAGAAACAAAAGAG 60.025 41.667 6.36 0.00 0.00 2.85
79 80 3.876320 GCATGCCCAAAAGAAACAAAAGA 59.124 39.130 6.36 0.00 0.00 2.52
80 81 3.303263 CGCATGCCCAAAAGAAACAAAAG 60.303 43.478 13.15 0.00 0.00 2.27
81 82 2.611292 CGCATGCCCAAAAGAAACAAAA 59.389 40.909 13.15 0.00 0.00 2.44
82 83 2.208431 CGCATGCCCAAAAGAAACAAA 58.792 42.857 13.15 0.00 0.00 2.83
83 84 1.137872 ACGCATGCCCAAAAGAAACAA 59.862 42.857 13.15 0.00 0.00 2.83
84 85 0.749649 ACGCATGCCCAAAAGAAACA 59.250 45.000 13.15 0.00 0.00 2.83
85 86 1.139163 CACGCATGCCCAAAAGAAAC 58.861 50.000 13.15 0.00 0.00 2.78
86 87 0.749649 ACACGCATGCCCAAAAGAAA 59.250 45.000 13.15 0.00 0.00 2.52
87 88 0.031857 CACACGCATGCCCAAAAGAA 59.968 50.000 13.15 0.00 0.00 2.52
88 89 1.659233 CACACGCATGCCCAAAAGA 59.341 52.632 13.15 0.00 0.00 2.52
89 90 2.023223 GCACACGCATGCCCAAAAG 61.023 57.895 13.15 0.00 39.86 2.27
90 91 2.028778 GCACACGCATGCCCAAAA 59.971 55.556 13.15 0.00 39.86 2.44
96 97 2.281359 GCAAATAGCACACGCATGC 58.719 52.632 7.91 7.91 46.50 4.06
113 114 1.067354 CAAAGAGTTCAATGCTGGGGC 60.067 52.381 0.00 0.00 39.26 5.80
114 115 2.242043 ACAAAGAGTTCAATGCTGGGG 58.758 47.619 0.00 0.00 0.00 4.96
115 116 5.649782 ATAACAAAGAGTTCAATGCTGGG 57.350 39.130 0.00 0.00 41.64 4.45
116 117 7.128331 CGATATAACAAAGAGTTCAATGCTGG 58.872 38.462 0.00 0.00 41.64 4.85
117 118 7.128331 CCGATATAACAAAGAGTTCAATGCTG 58.872 38.462 0.00 0.00 41.64 4.41
118 119 6.260936 CCCGATATAACAAAGAGTTCAATGCT 59.739 38.462 0.00 0.00 41.64 3.79
119 120 6.430451 CCCGATATAACAAAGAGTTCAATGC 58.570 40.000 0.00 0.00 41.64 3.56
120 121 6.260936 AGCCCGATATAACAAAGAGTTCAATG 59.739 38.462 0.00 0.00 41.64 2.82
121 122 6.260936 CAGCCCGATATAACAAAGAGTTCAAT 59.739 38.462 0.00 0.00 41.64 2.57
122 123 5.584649 CAGCCCGATATAACAAAGAGTTCAA 59.415 40.000 0.00 0.00 41.64 2.69
123 124 5.116180 CAGCCCGATATAACAAAGAGTTCA 58.884 41.667 0.00 0.00 41.64 3.18
124 125 5.116882 ACAGCCCGATATAACAAAGAGTTC 58.883 41.667 0.00 0.00 41.64 3.01
125 126 5.099042 ACAGCCCGATATAACAAAGAGTT 57.901 39.130 0.00 0.00 44.27 3.01
126 127 4.755266 ACAGCCCGATATAACAAAGAGT 57.245 40.909 0.00 0.00 0.00 3.24
127 128 4.260784 GCAACAGCCCGATATAACAAAGAG 60.261 45.833 0.00 0.00 0.00 2.85
128 129 3.625764 GCAACAGCCCGATATAACAAAGA 59.374 43.478 0.00 0.00 0.00 2.52
129 130 3.627577 AGCAACAGCCCGATATAACAAAG 59.372 43.478 0.00 0.00 0.00 2.77
130 131 3.616219 AGCAACAGCCCGATATAACAAA 58.384 40.909 0.00 0.00 0.00 2.83
131 132 3.275617 AGCAACAGCCCGATATAACAA 57.724 42.857 0.00 0.00 0.00 2.83
132 133 4.617253 ATAGCAACAGCCCGATATAACA 57.383 40.909 0.00 0.00 0.00 2.41
133 134 6.574350 AGATATAGCAACAGCCCGATATAAC 58.426 40.000 0.00 0.00 0.00 1.89
134 135 6.791867 AGATATAGCAACAGCCCGATATAA 57.208 37.500 0.00 0.00 0.00 0.98
135 136 9.755122 ATATAGATATAGCAACAGCCCGATATA 57.245 33.333 0.00 0.00 0.00 0.86
136 137 6.985653 ATAGATATAGCAACAGCCCGATAT 57.014 37.500 0.00 0.00 0.00 1.63
137 138 9.232473 CTATATAGATATAGCAACAGCCCGATA 57.768 37.037 3.44 0.00 36.77 2.92
138 139 6.985653 ATATAGATATAGCAACAGCCCGAT 57.014 37.500 0.00 0.00 0.00 4.18
139 140 7.511959 CTATATAGATATAGCAACAGCCCGA 57.488 40.000 3.44 0.00 36.77 5.14
150 151 7.173562 AGCTTTCGTCCCGCTATATAGATATAG 59.826 40.741 14.16 10.90 43.16 1.31
151 152 6.996879 AGCTTTCGTCCCGCTATATAGATATA 59.003 38.462 14.16 0.00 31.12 0.86
152 153 5.828859 AGCTTTCGTCCCGCTATATAGATAT 59.171 40.000 14.16 0.00 31.12 1.63
153 154 5.191426 AGCTTTCGTCCCGCTATATAGATA 58.809 41.667 14.16 0.00 31.12 1.98
154 155 4.017808 AGCTTTCGTCCCGCTATATAGAT 58.982 43.478 14.16 0.00 31.12 1.98
155 156 3.418995 AGCTTTCGTCCCGCTATATAGA 58.581 45.455 14.16 0.00 31.12 1.98
156 157 3.851976 AGCTTTCGTCCCGCTATATAG 57.148 47.619 5.30 5.30 31.12 1.31
157 158 4.595762 AAAGCTTTCGTCCCGCTATATA 57.404 40.909 5.69 0.00 32.90 0.86
158 159 3.470645 AAAGCTTTCGTCCCGCTATAT 57.529 42.857 5.69 0.00 32.90 0.86
159 160 2.973694 AAAGCTTTCGTCCCGCTATA 57.026 45.000 5.69 0.00 32.90 1.31
160 161 2.109425 AAAAGCTTTCGTCCCGCTAT 57.891 45.000 13.10 0.00 32.90 2.97
161 162 1.886886 AAAAAGCTTTCGTCCCGCTA 58.113 45.000 13.10 0.00 32.90 4.26
162 163 2.715536 AAAAAGCTTTCGTCCCGCT 58.284 47.368 13.10 0.00 35.09 5.52
179 180 9.923143 TGATTACTCGTCTCTTCTTTAATGAAA 57.077 29.630 5.42 0.00 0.00 2.69
186 187 8.138712 GGATGTATGATTACTCGTCTCTTCTTT 58.861 37.037 0.00 0.00 0.00 2.52
187 188 7.255660 GGGATGTATGATTACTCGTCTCTTCTT 60.256 40.741 0.00 0.00 0.00 2.52
188 189 6.207810 GGGATGTATGATTACTCGTCTCTTCT 59.792 42.308 0.00 0.00 0.00 2.85
189 190 6.207810 AGGGATGTATGATTACTCGTCTCTTC 59.792 42.308 0.00 0.00 0.00 2.87
190 191 6.071984 AGGGATGTATGATTACTCGTCTCTT 58.928 40.000 0.00 0.00 0.00 2.85
191 192 5.636123 AGGGATGTATGATTACTCGTCTCT 58.364 41.667 0.00 0.00 0.00 3.10
192 193 5.708230 AGAGGGATGTATGATTACTCGTCTC 59.292 44.000 0.00 0.00 0.00 3.36
193 194 5.636123 AGAGGGATGTATGATTACTCGTCT 58.364 41.667 0.00 0.00 0.00 4.18
194 195 5.968528 AGAGGGATGTATGATTACTCGTC 57.031 43.478 0.00 0.00 0.00 4.20
195 196 5.011125 CCAAGAGGGATGTATGATTACTCGT 59.989 44.000 0.00 0.00 40.01 4.18
196 197 5.243954 TCCAAGAGGGATGTATGATTACTCG 59.756 44.000 0.00 0.00 42.15 4.18
197 198 6.672266 TCCAAGAGGGATGTATGATTACTC 57.328 41.667 0.00 0.00 42.15 2.59
219 220 4.052159 TGCTTCAGTGCTTAGCTCTATC 57.948 45.455 8.52 0.13 35.93 2.08
220 221 4.344679 AGATGCTTCAGTGCTTAGCTCTAT 59.655 41.667 8.52 0.00 35.93 1.98
221 222 3.703556 AGATGCTTCAGTGCTTAGCTCTA 59.296 43.478 8.52 0.00 35.93 2.43
256 257 1.235724 AGCTTCGGTTTGCTTACACC 58.764 50.000 0.00 0.00 35.86 4.16
271 525 0.465460 TGGACCGTGAGCAAAAGCTT 60.465 50.000 0.00 0.00 0.00 3.74
273 527 1.166531 ACTGGACCGTGAGCAAAAGC 61.167 55.000 0.00 0.00 0.00 3.51
295 549 1.636148 TAGGTACAAGACAACCGCCT 58.364 50.000 0.00 0.00 40.88 5.52
296 550 2.277084 CATAGGTACAAGACAACCGCC 58.723 52.381 0.00 0.00 40.88 6.13
298 552 5.717119 AGTTACATAGGTACAAGACAACCG 58.283 41.667 0.00 0.00 40.88 4.44
299 553 8.255905 ACATAGTTACATAGGTACAAGACAACC 58.744 37.037 0.00 0.00 35.91 3.77
302 556 7.123697 AGCACATAGTTACATAGGTACAAGACA 59.876 37.037 0.00 0.00 0.00 3.41
303 557 7.490000 AGCACATAGTTACATAGGTACAAGAC 58.510 38.462 0.00 0.00 0.00 3.01
304 558 7.655521 AGCACATAGTTACATAGGTACAAGA 57.344 36.000 0.00 0.00 0.00 3.02
305 559 7.590322 CGTAGCACATAGTTACATAGGTACAAG 59.410 40.741 0.00 0.00 33.95 3.16
445 707 2.543777 TATATTCCCACTTGCGAGCC 57.456 50.000 0.00 0.00 0.00 4.70
446 708 5.122396 CCTTTATATATTCCCACTTGCGAGC 59.878 44.000 0.00 0.00 0.00 5.03
512 787 0.860533 TGCCGTAGTGCGTTAACAAC 59.139 50.000 6.39 3.43 39.32 3.32
564 839 0.254462 TTGCTTATCCCGCCATCACA 59.746 50.000 0.00 0.00 0.00 3.58
565 840 1.609208 ATTGCTTATCCCGCCATCAC 58.391 50.000 0.00 0.00 0.00 3.06
598 876 1.271656 GGATCGATAAACGGATCGGGT 59.728 52.381 14.16 0.00 46.93 5.28
599 877 1.271379 TGGATCGATAAACGGATCGGG 59.729 52.381 14.16 0.00 46.93 5.14
617 895 2.162408 GGAGAAGAAACGGAAATGCTGG 59.838 50.000 0.00 0.00 0.00 4.85
620 902 2.552315 TGTGGAGAAGAAACGGAAATGC 59.448 45.455 0.00 0.00 0.00 3.56
635 917 0.108615 CCGGACTTAGTGCTGTGGAG 60.109 60.000 0.00 0.00 0.00 3.86
650 932 1.975660 AAACAAGCTTTAGTGCCGGA 58.024 45.000 5.05 0.00 0.00 5.14
765 1048 6.258727 AGTGTTACAAAGATCGCCTTATGATG 59.741 38.462 0.00 0.00 34.00 3.07
797 1103 7.306213 TCTTCTGACACTGATAAACTTCTACG 58.694 38.462 0.00 0.00 0.00 3.51
808 1114 7.119407 CAGTCATGAAAATCTTCTGACACTGAT 59.881 37.037 0.00 0.00 39.56 2.90
815 1122 4.012374 GCCCAGTCATGAAAATCTTCTGA 58.988 43.478 0.00 0.00 32.33 3.27
836 1143 6.657836 TTACCTCGCTTTAATTAGTCTTGC 57.342 37.500 0.00 0.00 0.00 4.01
858 1167 7.951347 AAACTTAATCTGGATCAGCTCAATT 57.049 32.000 0.00 0.00 0.00 2.32
984 1344 4.690719 ATTTGTCGGGGCGCGTGA 62.691 61.111 23.46 8.62 0.00 4.35
985 1345 4.459331 CATTTGTCGGGGCGCGTG 62.459 66.667 23.46 10.34 0.00 5.34
1107 1467 1.227380 GTCTATGAGGCTGCCGGTG 60.227 63.158 13.96 3.59 0.00 4.94
1122 1482 3.083997 GGGGAGGTGGCGATGTCT 61.084 66.667 0.00 0.00 0.00 3.41
1194 1560 2.334181 CCATGCCATGTGTGTCGCA 61.334 57.895 3.63 0.00 35.35 5.10
1207 1573 4.337555 ACAGAACAGATCAATTAGCCATGC 59.662 41.667 0.00 0.00 0.00 4.06
1208 1574 5.732528 GCACAGAACAGATCAATTAGCCATG 60.733 44.000 0.00 0.00 0.00 3.66
1209 1575 4.337555 GCACAGAACAGATCAATTAGCCAT 59.662 41.667 0.00 0.00 0.00 4.40
1210 1576 3.691118 GCACAGAACAGATCAATTAGCCA 59.309 43.478 0.00 0.00 0.00 4.75
1427 1804 3.483869 GGGCCCTGCAGGTAGGAG 61.484 72.222 30.63 16.26 40.42 3.69
1487 1864 1.377856 GCTGTGGAAGGAGAAGCCC 60.378 63.158 0.00 0.00 37.37 5.19
1528 1905 1.183030 AGATGGTTGGACCGACGACA 61.183 55.000 5.75 0.00 42.58 4.35
1571 1948 9.720769 CAAACCAAACTAAAGATAGAAGAGGTA 57.279 33.333 0.00 0.00 33.15 3.08
1608 1993 1.808945 CAGCTCCTGTAACTTGCCTTG 59.191 52.381 0.00 0.00 0.00 3.61
1610 1995 0.322008 GCAGCTCCTGTAACTTGCCT 60.322 55.000 0.00 0.00 33.43 4.75
1619 2004 1.526917 AAGCGTTTGCAGCTCCTGT 60.527 52.632 0.00 0.00 45.31 4.00
1651 2036 4.783055 TCAACTTAGCCAACCTACAACAA 58.217 39.130 0.00 0.00 0.00 2.83
1652 2037 4.385825 CTCAACTTAGCCAACCTACAACA 58.614 43.478 0.00 0.00 0.00 3.33
1653 2038 3.188667 GCTCAACTTAGCCAACCTACAAC 59.811 47.826 0.00 0.00 36.45 3.32
1659 2044 2.706555 GTTGCTCAACTTAGCCAACC 57.293 50.000 5.56 0.00 42.05 3.77
1694 2079 3.463048 TTAAAGGACGGAGGGAGTACT 57.537 47.619 0.00 0.00 33.42 2.73
1695 2080 3.766051 TCTTTAAAGGACGGAGGGAGTAC 59.234 47.826 15.13 0.00 0.00 2.73
1696 2081 4.021916 CTCTTTAAAGGACGGAGGGAGTA 58.978 47.826 15.13 0.00 0.00 2.59
1697 2082 2.832733 CTCTTTAAAGGACGGAGGGAGT 59.167 50.000 15.13 0.00 0.00 3.85
1699 2084 2.565834 CACTCTTTAAAGGACGGAGGGA 59.434 50.000 15.13 0.00 29.82 4.20
1700 2085 2.302157 ACACTCTTTAAAGGACGGAGGG 59.698 50.000 15.13 8.51 34.07 4.30
1701 2086 3.679824 ACACTCTTTAAAGGACGGAGG 57.320 47.619 15.13 2.85 0.00 4.30
1702 2087 5.388408 AGTACACTCTTTAAAGGACGGAG 57.612 43.478 15.13 7.51 0.00 4.63
1703 2088 5.279156 GGAAGTACACTCTTTAAAGGACGGA 60.279 44.000 15.13 0.00 0.00 4.69
1705 2090 5.535333 TGGAAGTACACTCTTTAAAGGACG 58.465 41.667 15.13 6.90 0.00 4.79
1706 2091 6.990939 AGTTGGAAGTACACTCTTTAAAGGAC 59.009 38.462 15.13 6.27 0.00 3.85
1707 2092 7.133133 AGTTGGAAGTACACTCTTTAAAGGA 57.867 36.000 15.13 1.82 0.00 3.36
1709 2094 8.674607 ACAAAGTTGGAAGTACACTCTTTAAAG 58.325 33.333 9.04 9.04 0.00 1.85
1710 2095 8.570068 ACAAAGTTGGAAGTACACTCTTTAAA 57.430 30.769 0.00 0.00 0.00 1.52
1711 2096 8.455682 CAACAAAGTTGGAAGTACACTCTTTAA 58.544 33.333 2.05 0.00 0.00 1.52
1713 2098 6.127730 CCAACAAAGTTGGAAGTACACTCTTT 60.128 38.462 21.24 0.00 42.06 2.52
1714 2099 5.357032 CCAACAAAGTTGGAAGTACACTCTT 59.643 40.000 21.24 0.00 42.06 2.85
1715 2100 4.881850 CCAACAAAGTTGGAAGTACACTCT 59.118 41.667 21.24 0.00 42.06 3.24
1716 2101 4.879545 TCCAACAAAGTTGGAAGTACACTC 59.120 41.667 24.83 0.00 44.90 3.51
1717 2102 4.850680 TCCAACAAAGTTGGAAGTACACT 58.149 39.130 24.83 0.00 44.90 3.55
1718 2103 4.036380 CCTCCAACAAAGTTGGAAGTACAC 59.964 45.833 26.25 0.00 46.85 2.90
1719 2104 4.204012 CCTCCAACAAAGTTGGAAGTACA 58.796 43.478 26.25 8.75 46.85 2.90
1720 2105 3.568430 CCCTCCAACAAAGTTGGAAGTAC 59.432 47.826 26.25 0.00 46.85 2.73
1721 2106 3.203487 ACCCTCCAACAAAGTTGGAAGTA 59.797 43.478 26.25 9.67 46.85 2.24
1723 2108 2.623416 GACCCTCCAACAAAGTTGGAAG 59.377 50.000 26.25 21.51 46.85 3.46
1724 2109 2.024846 TGACCCTCCAACAAAGTTGGAA 60.025 45.455 26.25 12.88 46.85 3.53
1726 2111 2.065899 TGACCCTCCAACAAAGTTGG 57.934 50.000 20.09 20.09 40.87 3.77
1727 2112 3.447229 AGTTTGACCCTCCAACAAAGTTG 59.553 43.478 3.00 3.00 34.79 3.16
1728 2113 3.708451 AGTTTGACCCTCCAACAAAGTT 58.292 40.909 0.00 0.00 34.79 2.66
1729 2114 3.382083 AGTTTGACCCTCCAACAAAGT 57.618 42.857 0.00 0.00 34.86 2.66
1730 2115 5.316987 AGATAGTTTGACCCTCCAACAAAG 58.683 41.667 0.00 0.00 34.86 2.77
1731 2116 5.163141 TGAGATAGTTTGACCCTCCAACAAA 60.163 40.000 0.00 0.00 0.00 2.83
1732 2117 4.349636 TGAGATAGTTTGACCCTCCAACAA 59.650 41.667 0.00 0.00 0.00 2.83
1733 2118 3.907474 TGAGATAGTTTGACCCTCCAACA 59.093 43.478 0.00 0.00 0.00 3.33
1734 2119 4.553330 TGAGATAGTTTGACCCTCCAAC 57.447 45.455 0.00 0.00 0.00 3.77
1735 2120 5.073144 ACTTTGAGATAGTTTGACCCTCCAA 59.927 40.000 0.00 0.00 0.00 3.53
1736 2121 4.597507 ACTTTGAGATAGTTTGACCCTCCA 59.402 41.667 0.00 0.00 0.00 3.86
1737 2122 5.167303 ACTTTGAGATAGTTTGACCCTCC 57.833 43.478 0.00 0.00 0.00 4.30
1745 2130 6.289064 ACTCGGTCAAACTTTGAGATAGTTT 58.711 36.000 4.36 0.00 44.38 2.66
1746 2131 5.855045 ACTCGGTCAAACTTTGAGATAGTT 58.145 37.500 4.36 0.00 41.01 2.24
1747 2132 5.470047 ACTCGGTCAAACTTTGAGATAGT 57.530 39.130 4.36 5.79 41.01 2.12
1748 2133 6.202954 ACAAACTCGGTCAAACTTTGAGATAG 59.797 38.462 4.36 5.24 41.01 2.08
1749 2134 6.018262 CACAAACTCGGTCAAACTTTGAGATA 60.018 38.462 4.36 0.00 41.01 1.98
1750 2135 4.881850 ACAAACTCGGTCAAACTTTGAGAT 59.118 37.500 4.36 0.00 41.01 2.75
1751 2136 4.094294 CACAAACTCGGTCAAACTTTGAGA 59.906 41.667 4.36 0.00 41.01 3.27
1752 2137 4.342772 CACAAACTCGGTCAAACTTTGAG 58.657 43.478 4.36 0.00 41.01 3.02
1753 2138 3.426963 GCACAAACTCGGTCAAACTTTGA 60.427 43.478 0.00 0.00 37.33 2.69
1754 2139 2.851824 GCACAAACTCGGTCAAACTTTG 59.148 45.455 0.00 0.00 0.00 2.77
1755 2140 2.490115 TGCACAAACTCGGTCAAACTTT 59.510 40.909 0.00 0.00 0.00 2.66
1756 2141 2.088423 TGCACAAACTCGGTCAAACTT 58.912 42.857 0.00 0.00 0.00 2.66
1757 2142 1.745232 TGCACAAACTCGGTCAAACT 58.255 45.000 0.00 0.00 0.00 2.66
1758 2143 2.553079 TTGCACAAACTCGGTCAAAC 57.447 45.000 0.00 0.00 0.00 2.93
1759 2144 3.577649 TTTTGCACAAACTCGGTCAAA 57.422 38.095 0.00 0.00 0.00 2.69
1760 2145 3.577649 TTTTTGCACAAACTCGGTCAA 57.422 38.095 0.00 0.00 0.00 3.18
1761 2146 3.791973 ATTTTTGCACAAACTCGGTCA 57.208 38.095 0.00 0.00 0.00 4.02
1762 2147 7.247728 TGATATATTTTTGCACAAACTCGGTC 58.752 34.615 0.00 0.00 0.00 4.79
1763 2148 7.151999 TGATATATTTTTGCACAAACTCGGT 57.848 32.000 0.00 0.00 0.00 4.69
1764 2149 8.533965 CATTGATATATTTTTGCACAAACTCGG 58.466 33.333 0.00 0.00 0.00 4.63
1765 2150 9.075519 ACATTGATATATTTTTGCACAAACTCG 57.924 29.630 0.00 0.00 0.00 4.18
1771 2156 9.702494 TCACAAACATTGATATATTTTTGCACA 57.298 25.926 0.00 0.00 0.00 4.57
1834 2219 9.599322 GCCATCAAATTAGTAACATTAGATTCG 57.401 33.333 0.00 0.00 0.00 3.34
1847 2232 9.537192 CATCAACATTTATGCCATCAAATTAGT 57.463 29.630 0.00 0.00 0.00 2.24
1848 2233 9.537192 ACATCAACATTTATGCCATCAAATTAG 57.463 29.630 0.00 0.00 0.00 1.73
1850 2235 9.316730 GTACATCAACATTTATGCCATCAAATT 57.683 29.630 0.00 0.00 0.00 1.82
1851 2236 8.698210 AGTACATCAACATTTATGCCATCAAAT 58.302 29.630 0.00 0.00 0.00 2.32
1852 2237 8.065473 AGTACATCAACATTTATGCCATCAAA 57.935 30.769 0.00 0.00 0.00 2.69
1853 2238 7.643569 AGTACATCAACATTTATGCCATCAA 57.356 32.000 0.00 0.00 0.00 2.57
1854 2239 8.922931 ATAGTACATCAACATTTATGCCATCA 57.077 30.769 0.00 0.00 0.00 3.07
1905 2290 6.210584 TCCAACTTTCTTGGAAAGTCAAACTT 59.789 34.615 20.96 6.56 46.34 2.66
1906 2291 5.714806 TCCAACTTTCTTGGAAAGTCAAACT 59.285 36.000 20.96 7.13 46.34 2.66
1907 2292 5.961272 TCCAACTTTCTTGGAAAGTCAAAC 58.039 37.500 20.96 0.00 46.34 2.93
1916 2301 5.130477 AGAGTGTACTTCCAACTTTCTTGGA 59.870 40.000 0.00 0.00 46.08 3.53
1917 2302 5.368989 AGAGTGTACTTCCAACTTTCTTGG 58.631 41.667 0.00 0.00 40.87 3.61
1918 2303 6.927294 AAGAGTGTACTTCCAACTTTCTTG 57.073 37.500 0.00 0.00 0.00 3.02
1919 2304 9.457436 TTTAAAGAGTGTACTTCCAACTTTCTT 57.543 29.630 0.00 0.00 31.02 2.52
1920 2305 9.110502 CTTTAAAGAGTGTACTTCCAACTTTCT 57.889 33.333 9.77 0.00 31.02 2.52
1921 2306 8.343366 CCTTTAAAGAGTGTACTTCCAACTTTC 58.657 37.037 16.98 0.00 31.02 2.62
1922 2307 8.050930 TCCTTTAAAGAGTGTACTTCCAACTTT 58.949 33.333 16.98 0.00 32.26 2.66
1923 2308 7.498239 GTCCTTTAAAGAGTGTACTTCCAACTT 59.502 37.037 16.98 0.00 0.00 2.66
1924 2309 6.990939 GTCCTTTAAAGAGTGTACTTCCAACT 59.009 38.462 16.98 0.00 0.00 3.16
1925 2310 6.073927 CGTCCTTTAAAGAGTGTACTTCCAAC 60.074 42.308 16.98 0.00 0.00 3.77
1926 2311 5.987347 CGTCCTTTAAAGAGTGTACTTCCAA 59.013 40.000 16.98 0.00 0.00 3.53
1927 2312 5.510179 CCGTCCTTTAAAGAGTGTACTTCCA 60.510 44.000 16.98 0.00 0.00 3.53
1928 2313 4.928020 CCGTCCTTTAAAGAGTGTACTTCC 59.072 45.833 16.98 0.00 0.00 3.46
1929 2314 5.776744 TCCGTCCTTTAAAGAGTGTACTTC 58.223 41.667 16.98 0.00 0.00 3.01
1930 2315 5.279356 CCTCCGTCCTTTAAAGAGTGTACTT 60.279 44.000 16.98 0.00 0.00 2.24
1931 2316 4.220163 CCTCCGTCCTTTAAAGAGTGTACT 59.780 45.833 16.98 0.00 0.00 2.73
1932 2317 4.492611 CCTCCGTCCTTTAAAGAGTGTAC 58.507 47.826 16.98 5.84 0.00 2.90
1933 2318 3.512724 CCCTCCGTCCTTTAAAGAGTGTA 59.487 47.826 16.98 0.00 0.00 2.90
1934 2319 2.302157 CCCTCCGTCCTTTAAAGAGTGT 59.698 50.000 16.98 0.00 0.00 3.55
1935 2320 2.565834 TCCCTCCGTCCTTTAAAGAGTG 59.434 50.000 16.98 5.33 0.00 3.51
1936 2321 2.832733 CTCCCTCCGTCCTTTAAAGAGT 59.167 50.000 16.98 0.00 0.00 3.24
1937 2322 2.832733 ACTCCCTCCGTCCTTTAAAGAG 59.167 50.000 16.98 7.03 0.00 2.85
1938 2323 2.898662 ACTCCCTCCGTCCTTTAAAGA 58.101 47.619 16.98 0.24 0.00 2.52
1939 2324 5.354842 AATACTCCCTCCGTCCTTTAAAG 57.645 43.478 8.32 8.32 0.00 1.85
1940 2325 5.625197 CGAAATACTCCCTCCGTCCTTTAAA 60.625 44.000 0.00 0.00 0.00 1.52
1941 2326 4.142093 CGAAATACTCCCTCCGTCCTTTAA 60.142 45.833 0.00 0.00 0.00 1.52
1942 2327 3.382546 CGAAATACTCCCTCCGTCCTTTA 59.617 47.826 0.00 0.00 0.00 1.85
1943 2328 2.167900 CGAAATACTCCCTCCGTCCTTT 59.832 50.000 0.00 0.00 0.00 3.11
1944 2329 1.755380 CGAAATACTCCCTCCGTCCTT 59.245 52.381 0.00 0.00 0.00 3.36
1945 2330 1.400737 CGAAATACTCCCTCCGTCCT 58.599 55.000 0.00 0.00 0.00 3.85
1946 2331 0.249363 GCGAAATACTCCCTCCGTCC 60.249 60.000 0.00 0.00 0.00 4.79
1947 2332 0.458669 TGCGAAATACTCCCTCCGTC 59.541 55.000 0.00 0.00 0.00 4.79
1948 2333 0.899720 TTGCGAAATACTCCCTCCGT 59.100 50.000 0.00 0.00 0.00 4.69
1949 2334 2.018542 TTTGCGAAATACTCCCTCCG 57.981 50.000 0.00 0.00 0.00 4.63
1950 2335 3.561725 CAGATTTGCGAAATACTCCCTCC 59.438 47.826 0.00 0.00 0.00 4.30
1951 2336 3.561725 CCAGATTTGCGAAATACTCCCTC 59.438 47.826 0.00 0.00 0.00 4.30
1952 2337 3.545703 CCAGATTTGCGAAATACTCCCT 58.454 45.455 0.00 0.00 0.00 4.20
1953 2338 2.618709 CCCAGATTTGCGAAATACTCCC 59.381 50.000 0.00 0.00 0.00 4.30
1954 2339 3.065371 CACCCAGATTTGCGAAATACTCC 59.935 47.826 0.00 0.00 0.00 3.85
1955 2340 3.487544 GCACCCAGATTTGCGAAATACTC 60.488 47.826 0.00 0.00 0.00 2.59
1956 2341 2.423538 GCACCCAGATTTGCGAAATACT 59.576 45.455 0.00 0.00 0.00 2.12
1965 2588 3.350833 AGAGCTTTAGCACCCAGATTTG 58.649 45.455 4.33 0.00 45.16 2.32
1983 2606 1.137872 AGAGTCAATGCCGGCTTAGAG 59.862 52.381 29.70 14.71 0.00 2.43
2007 4843 0.385974 GTGCGATCATATTTGCGGGC 60.386 55.000 0.00 0.00 0.00 6.13
2013 4849 5.355071 ACACTGACATTGTGCGATCATATTT 59.645 36.000 0.00 0.00 38.86 1.40
2014 4850 4.877823 ACACTGACATTGTGCGATCATATT 59.122 37.500 0.00 0.00 38.86 1.28
2061 4912 9.459640 GTCATAATTAGACGTGCTTTATACTCA 57.540 33.333 0.00 0.00 0.00 3.41
2082 4933 1.141019 GCGAGGGACAAGCGTCATA 59.859 57.895 0.00 0.00 44.54 2.15
2108 4959 6.596309 ACTCATATTAGAGGATTGCGATGA 57.404 37.500 0.00 0.00 39.97 2.92
2112 4963 8.826710 TGTTAAAACTCATATTAGAGGATTGCG 58.173 33.333 0.00 0.00 39.97 4.85
2126 4977 8.080083 ACGTTAACGAATCTGTTAAAACTCAT 57.920 30.769 33.06 2.12 43.68 2.90
2143 4997 6.362016 TGTTGTATACACCACTAACGTTAACG 59.638 38.462 25.68 25.68 46.33 3.18
2144 4998 7.636259 TGTTGTATACACCACTAACGTTAAC 57.364 36.000 9.68 2.41 0.00 2.01
2145 4999 7.708322 TGTTGTTGTATACACCACTAACGTTAA 59.292 33.333 9.68 0.00 36.21 2.01
2146 5000 7.205992 TGTTGTTGTATACACCACTAACGTTA 58.794 34.615 4.68 7.94 36.21 3.18
2147 5001 6.047870 TGTTGTTGTATACACCACTAACGTT 58.952 36.000 4.68 5.88 36.21 3.99
2148 5002 5.599732 TGTTGTTGTATACACCACTAACGT 58.400 37.500 4.68 0.00 36.21 3.99
2162 5016 6.201997 GTCACTGTGTACATCATGTTGTTGTA 59.798 38.462 14.35 5.77 32.98 2.41
2163 5017 5.007626 GTCACTGTGTACATCATGTTGTTGT 59.992 40.000 14.35 6.65 34.90 3.32
2201 5071 9.182214 CCTTCAAATCTAATCTCATTCAGGAAA 57.818 33.333 0.00 0.00 0.00 3.13
2202 5072 8.331740 ACCTTCAAATCTAATCTCATTCAGGAA 58.668 33.333 0.00 0.00 0.00 3.36
2203 5073 7.772292 CACCTTCAAATCTAATCTCATTCAGGA 59.228 37.037 0.00 0.00 0.00 3.86
2319 5193 7.227711 CAGAGAAGATGAGATGATGAAAAGCAT 59.772 37.037 0.00 0.00 40.77 3.79
2366 5240 0.950836 TCCATTTTGCCGCGGATATG 59.049 50.000 33.48 23.04 0.00 1.78
2390 5264 0.960861 GGCTACCCTTGCAACTGGTC 60.961 60.000 17.05 6.41 33.55 4.02
2392 5266 1.678970 GGGCTACCCTTGCAACTGG 60.679 63.158 8.41 8.41 41.34 4.00
2395 5269 0.034089 AGATGGGCTACCCTTGCAAC 60.034 55.000 3.93 0.00 45.70 4.17
2407 5281 8.299570 CACCTTATAATGTATTTGAAGATGGGC 58.700 37.037 0.00 0.00 0.00 5.36
2424 5300 8.192774 CCGTAGATGTTGTTAGTCACCTTATAA 58.807 37.037 0.00 0.00 0.00 0.98
2425 5301 7.682741 GCCGTAGATGTTGTTAGTCACCTTATA 60.683 40.741 0.00 0.00 0.00 0.98
2439 5315 1.330521 CAAATCCGGCCGTAGATGTTG 59.669 52.381 26.12 19.70 0.00 3.33
2440 5316 1.663695 CAAATCCGGCCGTAGATGTT 58.336 50.000 26.12 13.48 0.00 2.71
2441 5317 0.179056 CCAAATCCGGCCGTAGATGT 60.179 55.000 26.12 12.93 0.00 3.06
2442 5318 2.616969 CCAAATCCGGCCGTAGATG 58.383 57.895 26.12 16.91 0.00 2.90
2451 5327 2.278026 GCTTAACTTGCCAAATCCGG 57.722 50.000 0.00 0.00 0.00 5.14
2460 5336 3.189495 GGAGTTTGAGAGGCTTAACTTGC 59.811 47.826 0.00 0.00 31.41 4.01
2461 5337 3.753797 GGGAGTTTGAGAGGCTTAACTTG 59.246 47.826 0.00 0.00 31.41 3.16
2462 5338 3.557264 CGGGAGTTTGAGAGGCTTAACTT 60.557 47.826 0.00 0.00 31.41 2.66
2463 5339 2.028020 CGGGAGTTTGAGAGGCTTAACT 60.028 50.000 0.00 0.00 33.78 2.24
2464 5340 2.347731 CGGGAGTTTGAGAGGCTTAAC 58.652 52.381 0.00 0.00 0.00 2.01
2465 5341 1.338769 GCGGGAGTTTGAGAGGCTTAA 60.339 52.381 0.00 0.00 0.00 1.85
2466 5342 0.249398 GCGGGAGTTTGAGAGGCTTA 59.751 55.000 0.00 0.00 0.00 3.09
2467 5343 1.003233 GCGGGAGTTTGAGAGGCTT 60.003 57.895 0.00 0.00 0.00 4.35
2468 5344 2.665603 GCGGGAGTTTGAGAGGCT 59.334 61.111 0.00 0.00 0.00 4.58
2469 5345 2.815647 CGCGGGAGTTTGAGAGGC 60.816 66.667 0.00 0.00 0.00 4.70
2470 5346 2.125512 CCGCGGGAGTTTGAGAGG 60.126 66.667 20.10 0.00 0.00 3.69
2471 5347 2.125512 CCCGCGGGAGTTTGAGAG 60.126 66.667 41.82 7.45 37.50 3.20
2485 5361 3.039202 GATTGTGAAGGCGTGCCCG 62.039 63.158 7.39 0.00 39.21 6.13
2486 5362 2.877691 GATTGTGAAGGCGTGCCC 59.122 61.111 7.39 0.00 36.58 5.36
2487 5363 1.017177 TACGATTGTGAAGGCGTGCC 61.017 55.000 1.67 1.67 37.56 5.01
2488 5364 0.094730 GTACGATTGTGAAGGCGTGC 59.905 55.000 0.00 0.00 37.56 5.34
2489 5365 1.424403 TGTACGATTGTGAAGGCGTG 58.576 50.000 0.00 0.00 37.56 5.34
2490 5366 2.094182 AGATGTACGATTGTGAAGGCGT 60.094 45.455 0.00 0.00 40.42 5.68
2491 5367 2.540515 AGATGTACGATTGTGAAGGCG 58.459 47.619 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.