Multiple sequence alignment - TraesCS2B01G128200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G128200 chr2B 100.000 3881 0 0 1 3881 96051604 96047724 0.000000e+00 7167.0
1 TraesCS2B01G128200 chr2B 92.200 3154 203 31 741 3881 95992255 95989132 0.000000e+00 4421.0
2 TraesCS2B01G128200 chr2B 91.967 3162 203 31 732 3881 95943125 95940003 0.000000e+00 4385.0
3 TraesCS2B01G128200 chr2B 91.899 3160 218 25 732 3881 95951131 95948000 0.000000e+00 4383.0
4 TraesCS2B01G128200 chr2B 91.883 3154 213 31 741 3881 96000561 95997438 0.000000e+00 4366.0
5 TraesCS2B01G128200 chr2B 91.854 3155 211 34 741 3881 96008924 96005802 0.000000e+00 4361.0
6 TraesCS2B01G128200 chr2B 91.598 3154 218 33 741 3881 95984069 95980950 0.000000e+00 4313.0
7 TraesCS2B01G128200 chr2B 91.361 3160 215 23 732 3881 95959155 95956044 0.000000e+00 4270.0
8 TraesCS2B01G128200 chr2B 92.199 2756 175 28 741 3485 96018173 96015447 0.000000e+00 3862.0
9 TraesCS2B01G128200 chr2B 92.090 2756 178 28 741 3485 96013761 96011035 0.000000e+00 3845.0
10 TraesCS2B01G128200 chr2B 85.701 1084 131 19 981 2056 95861037 95859970 0.000000e+00 1122.0
11 TraesCS2B01G128200 chr2D 92.046 2414 181 6 1473 3881 61304563 61302156 0.000000e+00 3384.0
12 TraesCS2B01G128200 chr2D 83.224 1675 190 45 453 2077 61243931 61242298 0.000000e+00 1452.0
13 TraesCS2B01G128200 chr2D 86.293 1087 133 13 981 2059 61234549 61233471 0.000000e+00 1168.0
14 TraesCS2B01G128200 chr2D 81.919 1084 108 42 459 1487 61307503 61306453 0.000000e+00 835.0
15 TraesCS2B01G128200 chr2D 91.304 276 14 6 457 726 61267607 61267336 6.130000e-98 368.0
16 TraesCS2B01G128200 chr2D 91.007 278 15 7 453 726 61283392 61283121 2.200000e-97 366.0
17 TraesCS2B01G128200 chr2D 88.636 220 14 3 453 672 61241050 61240842 1.380000e-64 257.0
18 TraesCS2B01G128200 chr2D 87.662 154 6 4 21 170 61252172 61252028 2.400000e-37 167.0
19 TraesCS2B01G128200 chr7B 85.261 536 72 4 3225 3758 568769804 568770334 2.640000e-151 545.0
20 TraesCS2B01G128200 chr2A 82.576 264 14 20 406 651 61797546 61797297 1.830000e-48 204.0
21 TraesCS2B01G128200 chr6A 91.667 48 4 0 777 824 6886879 6886926 2.500000e-07 67.6
22 TraesCS2B01G128200 chr4B 97.436 39 1 0 738 776 395908498 395908460 2.500000e-07 67.6
23 TraesCS2B01G128200 chr4A 93.333 45 3 0 779 823 291973078 291973122 2.500000e-07 67.6
24 TraesCS2B01G128200 chr4A 95.000 40 2 0 737 776 698331018 698331057 3.240000e-06 63.9
25 TraesCS2B01G128200 chr6D 93.333 45 2 1 781 824 375809295 375809339 9.000000e-07 65.8
26 TraesCS2B01G128200 chr6D 94.872 39 2 0 777 815 7198207 7198245 1.160000e-05 62.1
27 TraesCS2B01G128200 chr6B 93.333 45 2 1 781 825 562560296 562560339 9.000000e-07 65.8
28 TraesCS2B01G128200 chr7A 86.792 53 5 1 763 813 605167796 605167848 1.510000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G128200 chr2B 96047724 96051604 3880 True 7167.000000 7167 100.000000 1 3881 1 chr2B.!!$R8 3880
1 TraesCS2B01G128200 chr2B 95989132 95992255 3123 True 4421.000000 4421 92.200000 741 3881 1 chr2B.!!$R6 3140
2 TraesCS2B01G128200 chr2B 95940003 95943125 3122 True 4385.000000 4385 91.967000 732 3881 1 chr2B.!!$R2 3149
3 TraesCS2B01G128200 chr2B 95948000 95951131 3131 True 4383.000000 4383 91.899000 732 3881 1 chr2B.!!$R3 3149
4 TraesCS2B01G128200 chr2B 95997438 96000561 3123 True 4366.000000 4366 91.883000 741 3881 1 chr2B.!!$R7 3140
5 TraesCS2B01G128200 chr2B 95980950 95984069 3119 True 4313.000000 4313 91.598000 741 3881 1 chr2B.!!$R5 3140
6 TraesCS2B01G128200 chr2B 95956044 95959155 3111 True 4270.000000 4270 91.361000 732 3881 1 chr2B.!!$R4 3149
7 TraesCS2B01G128200 chr2B 96005802 96018173 12371 True 4022.666667 4361 92.047667 741 3881 3 chr2B.!!$R9 3140
8 TraesCS2B01G128200 chr2B 95859970 95861037 1067 True 1122.000000 1122 85.701000 981 2056 1 chr2B.!!$R1 1075
9 TraesCS2B01G128200 chr2D 61302156 61307503 5347 True 2109.500000 3384 86.982500 459 3881 2 chr2D.!!$R6 3422
10 TraesCS2B01G128200 chr2D 61233471 61234549 1078 True 1168.000000 1168 86.293000 981 2059 1 chr2D.!!$R1 1078
11 TraesCS2B01G128200 chr2D 61240842 61243931 3089 True 854.500000 1452 85.930000 453 2077 2 chr2D.!!$R5 1624
12 TraesCS2B01G128200 chr7B 568769804 568770334 530 False 545.000000 545 85.261000 3225 3758 1 chr7B.!!$F1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 322 0.036732 ACAGGCTGCAAATTCCTCGA 59.963 50.0 15.89 0.00 0.00 4.04 F
350 351 0.247419 CGCGTCGTCGTACACTACAT 60.247 55.0 0.00 0.00 39.49 2.29 F
381 382 0.456482 TATACCGGTGTGTCAACGCG 60.456 55.0 19.93 3.53 43.82 6.01 F
1224 9792 0.512952 GAGTCACACGCCACATTGAC 59.487 55.0 0.00 0.00 38.95 3.18 F
1782 12268 0.756294 CCCCCTTGTGTTTTGGTTCC 59.244 55.0 0.00 0.00 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1208 9776 0.464554 TTGGTCAATGTGGCGTGTGA 60.465 50.000 0.00 0.00 0.00 3.58 R
1585 12070 1.376424 CCAGACGAAGGTGCAGCAT 60.376 57.895 19.63 5.86 0.00 3.79 R
1697 12183 1.776975 AAGGCAGAGCACCTCAGCTT 61.777 55.000 9.05 0.00 46.75 3.74 R
2478 13037 1.471684 CTTGCTTCATGACCCTCTTGC 59.528 52.381 0.00 0.00 0.00 4.01 R
3434 14000 0.249120 TCCGCGAGATGGACAACAAT 59.751 50.000 8.23 0.00 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 9.603921 TTTTTCAAAAGAAAAAGATCTGCATCT 57.396 25.926 10.96 0.00 41.59 2.90
57 58 8.583810 TTTCAAAAGAAAAAGATCTGCATCTG 57.416 30.769 0.00 0.00 38.55 2.90
58 59 6.154445 TCAAAAGAAAAAGATCTGCATCTGC 58.846 36.000 0.00 0.00 38.55 4.26
60 61 3.022406 AGAAAAAGATCTGCATCTGCCC 58.978 45.455 0.00 0.00 38.55 5.36
61 62 2.519771 AAAAGATCTGCATCTGCCCA 57.480 45.000 0.00 0.00 38.55 5.36
62 63 2.054232 AAAGATCTGCATCTGCCCAG 57.946 50.000 0.00 0.00 38.55 4.45
64 65 1.897615 GATCTGCATCTGCCCAGCC 60.898 63.158 0.00 0.00 41.18 4.85
66 67 1.058428 ATCTGCATCTGCCCAGCCTA 61.058 55.000 0.00 0.00 41.18 3.93
67 68 1.227883 CTGCATCTGCCCAGCCTAG 60.228 63.158 0.00 0.00 41.18 3.02
68 69 2.112718 GCATCTGCCCAGCCTAGG 59.887 66.667 3.67 3.67 34.31 3.02
76 77 2.606587 CCCAGCCTAGGGTTGTGCT 61.607 63.158 11.77 0.00 44.24 4.40
77 78 4.308526 CAGCCTAGGGTTGTGCTG 57.691 61.111 11.77 6.38 44.43 4.41
78 79 4.232905 AGCCTAGGGTTGTGCTGA 57.767 55.556 7.93 0.00 31.70 4.26
79 80 1.986413 AGCCTAGGGTTGTGCTGAG 59.014 57.895 7.93 0.00 31.70 3.35
80 81 1.746991 GCCTAGGGTTGTGCTGAGC 60.747 63.158 11.72 0.00 0.00 4.26
81 82 1.078143 CCTAGGGTTGTGCTGAGCC 60.078 63.158 0.23 0.00 34.91 4.70
82 83 1.448540 CTAGGGTTGTGCTGAGCCG 60.449 63.158 0.23 0.00 39.60 5.52
83 84 3.605749 TAGGGTTGTGCTGAGCCGC 62.606 63.158 0.23 0.00 39.60 6.53
100 101 4.680237 CCGTCCAGCAGGCACGAA 62.680 66.667 17.32 0.00 35.49 3.85
101 102 3.114616 CGTCCAGCAGGCACGAAG 61.115 66.667 12.50 0.00 35.49 3.79
102 103 2.743928 GTCCAGCAGGCACGAAGG 60.744 66.667 0.00 0.00 33.74 3.46
103 104 3.241530 TCCAGCAGGCACGAAGGT 61.242 61.111 0.00 0.00 33.74 3.50
114 115 4.821589 CGAAGGTGAGGCCCTCGC 62.822 72.222 16.16 16.16 43.30 5.03
116 117 2.930562 AAGGTGAGGCCCTCGCTT 60.931 61.111 22.88 13.84 40.43 4.68
117 118 2.860972 GAAGGTGAGGCCCTCGCTTC 62.861 65.000 22.88 18.69 40.43 3.86
121 122 4.459089 GAGGCCCTCGCTTCGCTT 62.459 66.667 0.00 0.00 30.69 4.68
122 123 4.767255 AGGCCCTCGCTTCGCTTG 62.767 66.667 0.00 0.00 34.44 4.01
125 126 4.767255 CCCTCGCTTCGCTTGGCT 62.767 66.667 0.00 0.00 0.00 4.75
127 128 2.744768 CCTCGCTTCGCTTGGCTTC 61.745 63.158 0.00 0.00 0.00 3.86
129 130 1.964290 CTCGCTTCGCTTGGCTTCTG 61.964 60.000 0.00 0.00 0.00 3.02
130 131 2.177778 GCTTCGCTTGGCTTCTGC 59.822 61.111 0.00 0.00 38.76 4.26
131 132 2.620112 GCTTCGCTTGGCTTCTGCA 61.620 57.895 0.00 0.00 41.91 4.41
132 133 1.930908 GCTTCGCTTGGCTTCTGCAT 61.931 55.000 0.00 0.00 41.91 3.96
133 134 0.179171 CTTCGCTTGGCTTCTGCATG 60.179 55.000 0.00 0.00 41.91 4.06
134 135 2.202570 CGCTTGGCTTCTGCATGC 60.203 61.111 11.82 11.82 41.91 4.06
139 140 2.274760 GGCTTCTGCATGCCCTCT 59.725 61.111 16.68 0.00 43.11 3.69
140 141 1.379576 GGCTTCTGCATGCCCTCTT 60.380 57.895 16.68 0.00 43.11 2.85
141 142 0.969409 GGCTTCTGCATGCCCTCTTT 60.969 55.000 16.68 0.00 43.11 2.52
142 143 0.455005 GCTTCTGCATGCCCTCTTTC 59.545 55.000 16.68 0.00 39.41 2.62
143 144 1.954258 GCTTCTGCATGCCCTCTTTCT 60.954 52.381 16.68 0.00 39.41 2.52
144 145 2.015587 CTTCTGCATGCCCTCTTTCTC 58.984 52.381 16.68 0.00 0.00 2.87
145 146 1.283347 TCTGCATGCCCTCTTTCTCT 58.717 50.000 16.68 0.00 0.00 3.10
146 147 1.209019 TCTGCATGCCCTCTTTCTCTC 59.791 52.381 16.68 0.00 0.00 3.20
148 149 0.545646 GCATGCCCTCTTTCTCTCCT 59.454 55.000 6.36 0.00 0.00 3.69
149 150 1.474855 GCATGCCCTCTTTCTCTCCTC 60.475 57.143 6.36 0.00 0.00 3.71
151 152 1.142965 GCCCTCTTTCTCTCCTCGC 59.857 63.158 0.00 0.00 0.00 5.03
152 153 1.435515 CCCTCTTTCTCTCCTCGCG 59.564 63.158 0.00 0.00 0.00 5.87
153 154 1.226831 CCTCTTTCTCTCCTCGCGC 60.227 63.158 0.00 0.00 0.00 6.86
155 156 0.525242 CTCTTTCTCTCCTCGCGCTG 60.525 60.000 5.56 0.00 0.00 5.18
156 157 1.214062 CTTTCTCTCCTCGCGCTGT 59.786 57.895 5.56 0.00 0.00 4.40
157 158 0.800300 CTTTCTCTCCTCGCGCTGTC 60.800 60.000 5.56 0.00 0.00 3.51
159 160 4.544689 CTCTCCTCGCGCTGTCGG 62.545 72.222 5.56 0.00 35.95 4.79
169 170 3.695606 GCTGTCGGCAGGGTCTGA 61.696 66.667 20.36 0.00 42.78 3.27
171 172 1.142748 CTGTCGGCAGGGTCTGATC 59.857 63.158 9.79 0.00 39.01 2.92
174 175 0.531532 GTCGGCAGGGTCTGATCATG 60.532 60.000 0.00 0.00 32.44 3.07
175 176 0.977627 TCGGCAGGGTCTGATCATGT 60.978 55.000 4.37 0.00 32.44 3.21
176 177 0.812811 CGGCAGGGTCTGATCATGTG 60.813 60.000 4.37 0.00 32.44 3.21
177 178 1.099879 GGCAGGGTCTGATCATGTGC 61.100 60.000 4.37 2.87 32.44 4.57
179 180 0.465097 CAGGGTCTGATCATGTGCCC 60.465 60.000 13.15 13.15 32.44 5.36
180 181 0.622738 AGGGTCTGATCATGTGCCCT 60.623 55.000 16.25 16.25 41.31 5.19
181 182 0.179034 GGGTCTGATCATGTGCCCTC 60.179 60.000 13.54 0.00 33.58 4.30
182 183 0.835941 GGTCTGATCATGTGCCCTCT 59.164 55.000 0.00 0.00 0.00 3.69
183 184 1.211457 GGTCTGATCATGTGCCCTCTT 59.789 52.381 0.00 0.00 0.00 2.85
185 186 2.941720 GTCTGATCATGTGCCCTCTTTC 59.058 50.000 0.00 0.00 0.00 2.62
186 187 2.092753 TCTGATCATGTGCCCTCTTTCC 60.093 50.000 0.00 0.00 0.00 3.13
187 188 1.634973 TGATCATGTGCCCTCTTTCCA 59.365 47.619 0.00 0.00 0.00 3.53
188 189 2.295885 GATCATGTGCCCTCTTTCCAG 58.704 52.381 0.00 0.00 0.00 3.86
190 191 0.329261 CATGTGCCCTCTTTCCAGGA 59.671 55.000 0.00 0.00 35.20 3.86
192 193 0.620556 TGTGCCCTCTTTCCAGGATC 59.379 55.000 0.00 0.00 35.20 3.36
193 194 0.106967 GTGCCCTCTTTCCAGGATCC 60.107 60.000 2.48 2.48 35.20 3.36
194 195 1.147153 GCCCTCTTTCCAGGATCCG 59.853 63.158 5.98 1.07 35.20 4.18
195 196 1.627297 GCCCTCTTTCCAGGATCCGT 61.627 60.000 5.98 0.00 35.20 4.69
197 198 1.407437 CCCTCTTTCCAGGATCCGTTG 60.407 57.143 5.98 0.00 35.20 4.10
198 199 1.279271 CCTCTTTCCAGGATCCGTTGT 59.721 52.381 5.98 0.00 35.20 3.32
199 200 2.290323 CCTCTTTCCAGGATCCGTTGTT 60.290 50.000 5.98 0.00 35.20 2.83
200 201 3.003480 CTCTTTCCAGGATCCGTTGTTC 58.997 50.000 5.98 0.00 0.00 3.18
202 203 0.036765 TTCCAGGATCCGTTGTTCCG 60.037 55.000 5.98 0.00 35.79 4.30
204 205 2.125673 AGGATCCGTTGTTCCGCG 60.126 61.111 5.98 0.00 35.79 6.46
205 206 2.125832 GGATCCGTTGTTCCGCGA 60.126 61.111 8.23 0.00 0.00 5.87
206 207 1.520787 GGATCCGTTGTTCCGCGAT 60.521 57.895 8.23 0.00 0.00 4.58
208 209 1.129326 GATCCGTTGTTCCGCGATAG 58.871 55.000 8.23 0.00 0.00 2.08
209 210 0.249322 ATCCGTTGTTCCGCGATAGG 60.249 55.000 8.23 0.63 0.00 2.57
210 211 1.140161 CCGTTGTTCCGCGATAGGA 59.860 57.895 8.23 0.00 38.79 2.94
218 219 0.669077 TCCGCGATAGGAAGAAGAGC 59.331 55.000 8.23 0.00 37.36 4.09
222 223 1.539280 GCGATAGGAAGAAGAGCACCC 60.539 57.143 0.00 0.00 0.00 4.61
223 224 1.269309 CGATAGGAAGAAGAGCACCCG 60.269 57.143 0.00 0.00 0.00 5.28
224 225 1.757699 GATAGGAAGAAGAGCACCCGT 59.242 52.381 0.00 0.00 0.00 5.28
225 226 1.640917 TAGGAAGAAGAGCACCCGTT 58.359 50.000 0.00 0.00 0.00 4.44
227 228 1.975680 AGGAAGAAGAGCACCCGTTTA 59.024 47.619 0.00 0.00 0.00 2.01
228 229 2.074576 GGAAGAAGAGCACCCGTTTAC 58.925 52.381 0.00 0.00 0.00 2.01
229 230 2.074576 GAAGAAGAGCACCCGTTTACC 58.925 52.381 0.00 0.00 0.00 2.85
230 231 1.053424 AGAAGAGCACCCGTTTACCA 58.947 50.000 0.00 0.00 0.00 3.25
231 232 1.002087 AGAAGAGCACCCGTTTACCAG 59.998 52.381 0.00 0.00 0.00 4.00
232 233 0.605589 AAGAGCACCCGTTTACCAGC 60.606 55.000 0.00 0.00 0.00 4.85
233 234 1.003718 GAGCACCCGTTTACCAGCT 60.004 57.895 0.00 0.00 34.61 4.24
234 235 1.298859 GAGCACCCGTTTACCAGCTG 61.299 60.000 6.78 6.78 31.61 4.24
235 236 2.978018 GCACCCGTTTACCAGCTGC 61.978 63.158 8.66 0.00 0.00 5.25
237 238 3.124921 CCCGTTTACCAGCTGCCG 61.125 66.667 8.66 4.68 0.00 5.69
238 239 3.124921 CCGTTTACCAGCTGCCGG 61.125 66.667 8.66 10.12 0.00 6.13
239 240 3.799755 CGTTTACCAGCTGCCGGC 61.800 66.667 22.73 22.73 42.19 6.13
240 241 3.440415 GTTTACCAGCTGCCGGCC 61.440 66.667 26.77 9.73 43.05 6.13
242 243 3.622060 TTTACCAGCTGCCGGCCTC 62.622 63.158 26.77 15.84 43.05 4.70
244 245 3.672338 TACCAGCTGCCGGCCTCTA 62.672 63.158 26.77 3.41 43.05 2.43
245 246 4.232878 CCAGCTGCCGGCCTCTAG 62.233 72.222 26.77 16.13 43.05 2.43
246 247 4.906792 CAGCTGCCGGCCTCTAGC 62.907 72.222 26.77 25.62 43.05 3.42
255 256 3.470888 GCCTCTAGCCAAGCCGGA 61.471 66.667 5.05 0.00 36.56 5.14
257 258 2.105128 CTCTAGCCAAGCCGGACG 59.895 66.667 5.05 0.00 36.56 4.79
258 259 3.432051 CTCTAGCCAAGCCGGACGG 62.432 68.421 5.05 6.35 36.56 4.79
271 272 1.974875 GGACGGGGCGGTTGATTTT 60.975 57.895 0.00 0.00 0.00 1.82
272 273 1.211709 GACGGGGCGGTTGATTTTG 59.788 57.895 0.00 0.00 0.00 2.44
273 274 1.228306 ACGGGGCGGTTGATTTTGA 60.228 52.632 0.00 0.00 0.00 2.69
275 276 0.109319 CGGGGCGGTTGATTTTGAAG 60.109 55.000 0.00 0.00 0.00 3.02
276 277 1.253100 GGGGCGGTTGATTTTGAAGA 58.747 50.000 0.00 0.00 0.00 2.87
277 278 1.067846 GGGGCGGTTGATTTTGAAGAC 60.068 52.381 0.00 0.00 0.00 3.01
281 282 2.916111 CGGTTGATTTTGAAGACCGTG 58.084 47.619 5.16 0.00 45.94 4.94
282 283 2.350388 CGGTTGATTTTGAAGACCGTGG 60.350 50.000 5.16 0.00 45.94 4.94
283 284 2.607038 GGTTGATTTTGAAGACCGTGGC 60.607 50.000 0.00 0.00 0.00 5.01
284 285 1.974265 TGATTTTGAAGACCGTGGCA 58.026 45.000 0.00 0.00 0.00 4.92
288 289 0.179234 TTTGAAGACCGTGGCAGTGA 59.821 50.000 0.00 0.00 0.00 3.41
290 291 1.112916 TGAAGACCGTGGCAGTGAGA 61.113 55.000 0.00 0.00 0.00 3.27
291 292 0.667792 GAAGACCGTGGCAGTGAGAC 60.668 60.000 0.00 0.00 0.00 3.36
292 293 2.421877 AAGACCGTGGCAGTGAGACG 62.422 60.000 0.00 0.31 0.00 4.18
293 294 2.910479 ACCGTGGCAGTGAGACGA 60.910 61.111 14.06 0.00 35.05 4.20
295 296 2.022129 CCGTGGCAGTGAGACGAAC 61.022 63.158 14.06 0.00 35.05 3.95
296 297 2.022129 CGTGGCAGTGAGACGAACC 61.022 63.158 8.28 0.00 35.05 3.62
297 298 1.367840 GTGGCAGTGAGACGAACCT 59.632 57.895 0.00 0.00 0.00 3.50
298 299 0.249911 GTGGCAGTGAGACGAACCTT 60.250 55.000 0.00 0.00 0.00 3.50
299 300 0.468226 TGGCAGTGAGACGAACCTTT 59.532 50.000 0.00 0.00 0.00 3.11
303 304 2.032808 GCAGTGAGACGAACCTTTTCAC 60.033 50.000 0.00 0.00 38.68 3.18
304 305 3.194861 CAGTGAGACGAACCTTTTCACA 58.805 45.455 5.81 0.00 40.35 3.58
306 307 2.544267 GTGAGACGAACCTTTTCACAGG 59.456 50.000 0.00 0.00 38.36 4.00
307 308 1.531578 GAGACGAACCTTTTCACAGGC 59.468 52.381 0.00 0.00 37.47 4.85
308 309 1.141053 AGACGAACCTTTTCACAGGCT 59.859 47.619 0.00 0.00 37.47 4.58
309 310 1.264288 GACGAACCTTTTCACAGGCTG 59.736 52.381 14.16 14.16 37.47 4.85
310 311 0.040067 CGAACCTTTTCACAGGCTGC 60.040 55.000 15.89 0.00 37.47 5.25
312 313 1.408702 GAACCTTTTCACAGGCTGCAA 59.591 47.619 15.89 4.76 37.47 4.08
313 314 1.484038 ACCTTTTCACAGGCTGCAAA 58.516 45.000 15.89 11.18 37.47 3.68
314 315 2.041701 ACCTTTTCACAGGCTGCAAAT 58.958 42.857 15.89 0.00 37.47 2.32
315 316 2.435437 ACCTTTTCACAGGCTGCAAATT 59.565 40.909 15.89 0.00 37.47 1.82
317 318 2.818130 TTTCACAGGCTGCAAATTCC 57.182 45.000 15.89 0.00 0.00 3.01
318 319 1.999648 TTCACAGGCTGCAAATTCCT 58.000 45.000 15.89 0.00 0.00 3.36
320 321 0.169672 CACAGGCTGCAAATTCCTCG 59.830 55.000 15.89 0.00 0.00 4.63
321 322 0.036732 ACAGGCTGCAAATTCCTCGA 59.963 50.000 15.89 0.00 0.00 4.04
326 327 2.096013 GGCTGCAAATTCCTCGACTTAC 59.904 50.000 0.50 0.00 0.00 2.34
327 328 2.096013 GCTGCAAATTCCTCGACTTACC 59.904 50.000 0.00 0.00 0.00 2.85
328 329 3.334691 CTGCAAATTCCTCGACTTACCA 58.665 45.455 0.00 0.00 0.00 3.25
329 330 3.334691 TGCAAATTCCTCGACTTACCAG 58.665 45.455 0.00 0.00 0.00 4.00
330 331 2.678336 GCAAATTCCTCGACTTACCAGG 59.322 50.000 0.00 0.00 0.00 4.45
331 332 2.678336 CAAATTCCTCGACTTACCAGGC 59.322 50.000 0.00 0.00 0.00 4.85
338 339 3.621892 GACTTACCAGGCGCGTCGT 62.622 63.158 8.43 5.55 0.00 4.34
339 340 2.879462 CTTACCAGGCGCGTCGTC 60.879 66.667 8.43 0.00 0.00 4.20
344 345 4.746951 CAGGCGCGTCGTCGTACA 62.747 66.667 8.43 0.00 36.23 2.90
345 346 4.748679 AGGCGCGTCGTCGTACAC 62.749 66.667 8.43 0.00 36.23 2.90
346 347 4.748679 GGCGCGTCGTCGTACACT 62.749 66.667 8.43 0.00 39.49 3.55
347 348 2.096406 GCGCGTCGTCGTACACTA 59.904 61.111 8.43 0.00 39.49 2.74
348 349 2.204555 GCGCGTCGTCGTACACTAC 61.205 63.158 8.43 0.00 39.49 2.73
349 350 1.130411 CGCGTCGTCGTACACTACA 59.870 57.895 0.00 0.00 39.49 2.74
350 351 0.247419 CGCGTCGTCGTACACTACAT 60.247 55.000 0.00 0.00 39.49 2.29
351 352 1.006079 CGCGTCGTCGTACACTACATA 60.006 52.381 0.00 0.00 39.49 2.29
352 353 2.357793 GCGTCGTCGTACACTACATAC 58.642 52.381 3.66 0.00 39.49 2.39
353 354 2.029728 GCGTCGTCGTACACTACATACT 59.970 50.000 3.66 0.00 39.49 2.12
355 356 3.598003 CGTCGTCGTACACTACATACTCG 60.598 52.174 0.00 0.00 0.00 4.18
356 357 3.304559 GTCGTCGTACACTACATACTCGT 59.695 47.826 0.00 0.00 0.00 4.18
358 359 3.304293 CGTCGTACACTACATACTCGTCA 59.696 47.826 0.00 0.00 0.00 4.35
359 360 4.201618 CGTCGTACACTACATACTCGTCAA 60.202 45.833 0.00 0.00 0.00 3.18
360 361 5.501413 CGTCGTACACTACATACTCGTCAAT 60.501 44.000 0.00 0.00 0.00 2.57
362 363 7.568315 CGTCGTACACTACATACTCGTCAATAT 60.568 40.741 0.00 0.00 0.00 1.28
363 364 8.703336 GTCGTACACTACATACTCGTCAATATA 58.297 37.037 0.00 0.00 0.00 0.86
364 365 9.428097 TCGTACACTACATACTCGTCAATATAT 57.572 33.333 0.00 0.00 0.00 0.86
368 369 8.663025 ACACTACATACTCGTCAATATATACCG 58.337 37.037 0.00 0.00 0.00 4.02
371 372 6.849502 ACATACTCGTCAATATATACCGGTG 58.150 40.000 19.93 0.00 0.00 4.94
372 373 6.432162 ACATACTCGTCAATATATACCGGTGT 59.568 38.462 19.93 14.51 0.00 4.16
373 374 5.117355 ACTCGTCAATATATACCGGTGTG 57.883 43.478 19.93 5.65 0.00 3.82
374 375 4.581824 ACTCGTCAATATATACCGGTGTGT 59.418 41.667 19.93 12.26 0.00 3.72
375 376 5.112220 TCGTCAATATATACCGGTGTGTC 57.888 43.478 19.93 2.79 0.00 3.67
376 377 4.579753 TCGTCAATATATACCGGTGTGTCA 59.420 41.667 19.93 0.00 0.00 3.58
377 378 5.067544 TCGTCAATATATACCGGTGTGTCAA 59.932 40.000 19.93 0.00 0.00 3.18
378 379 5.174398 CGTCAATATATACCGGTGTGTCAAC 59.826 44.000 19.93 5.44 0.00 3.18
380 381 1.930567 ATATACCGGTGTGTCAACGC 58.069 50.000 19.93 0.00 43.82 4.84
381 382 0.456482 TATACCGGTGTGTCAACGCG 60.456 55.000 19.93 3.53 43.82 6.01
382 383 3.728576 TATACCGGTGTGTCAACGCGG 62.729 57.143 19.93 0.00 43.82 6.46
400 401 1.568025 GTCGTGAGGCCGTTGTTTC 59.432 57.895 0.00 0.00 0.00 2.78
402 403 0.675083 TCGTGAGGCCGTTGTTTCTA 59.325 50.000 0.00 0.00 0.00 2.10
403 404 0.788391 CGTGAGGCCGTTGTTTCTAC 59.212 55.000 0.00 0.00 0.00 2.59
405 406 0.675083 TGAGGCCGTTGTTTCTACGA 59.325 50.000 0.00 0.00 41.33 3.43
406 407 1.066136 GAGGCCGTTGTTTCTACGAC 58.934 55.000 0.00 0.00 41.33 4.34
408 409 1.069668 AGGCCGTTGTTTCTACGACTT 59.930 47.619 0.00 0.00 41.33 3.01
409 410 1.193874 GGCCGTTGTTTCTACGACTTG 59.806 52.381 5.47 0.00 41.33 3.16
410 411 1.193874 GCCGTTGTTTCTACGACTTGG 59.806 52.381 5.47 0.00 41.33 3.61
412 413 2.867975 CCGTTGTTTCTACGACTTGGTT 59.132 45.455 5.47 0.00 41.33 3.67
413 414 3.310501 CCGTTGTTTCTACGACTTGGTTT 59.689 43.478 5.47 0.00 41.33 3.27
414 415 4.511734 CGTTGTTTCTACGACTTGGTTTC 58.488 43.478 0.00 0.00 41.33 2.78
416 417 5.277154 CGTTGTTTCTACGACTTGGTTTCAT 60.277 40.000 0.00 0.00 41.33 2.57
417 418 5.917541 TGTTTCTACGACTTGGTTTCATC 57.082 39.130 0.00 0.00 0.00 2.92
418 419 5.607477 TGTTTCTACGACTTGGTTTCATCT 58.393 37.500 0.00 0.00 0.00 2.90
419 420 5.694910 TGTTTCTACGACTTGGTTTCATCTC 59.305 40.000 0.00 0.00 0.00 2.75
420 421 5.462530 TTCTACGACTTGGTTTCATCTCA 57.537 39.130 0.00 0.00 0.00 3.27
421 422 5.060662 TCTACGACTTGGTTTCATCTCAG 57.939 43.478 0.00 0.00 0.00 3.35
423 424 3.919216 ACGACTTGGTTTCATCTCAGAG 58.081 45.455 0.00 0.00 0.00 3.35
424 425 3.574396 ACGACTTGGTTTCATCTCAGAGA 59.426 43.478 1.54 1.54 0.00 3.10
425 426 4.172505 CGACTTGGTTTCATCTCAGAGAG 58.827 47.826 6.24 0.00 0.00 3.20
426 427 4.082517 CGACTTGGTTTCATCTCAGAGAGA 60.083 45.833 6.24 1.59 43.20 3.10
427 428 5.565637 CGACTTGGTTTCATCTCAGAGAGAA 60.566 44.000 6.24 7.16 42.27 2.87
429 430 6.595682 ACTTGGTTTCATCTCAGAGAGAAAA 58.404 36.000 18.82 13.12 42.27 2.29
430 431 6.484977 ACTTGGTTTCATCTCAGAGAGAAAAC 59.515 38.462 21.73 21.73 42.27 2.43
431 432 6.179906 TGGTTTCATCTCAGAGAGAAAACT 57.820 37.500 25.19 3.51 42.27 2.66
433 434 5.347364 GGTTTCATCTCAGAGAGAAAACTCG 59.653 44.000 25.36 4.51 42.27 4.18
434 435 4.710423 TCATCTCAGAGAGAAAACTCGG 57.290 45.455 6.24 0.00 42.27 4.63
438 439 1.819288 TCAGAGAGAAAACTCGGCGAT 59.181 47.619 11.27 0.00 41.25 4.58
440 441 2.600867 CAGAGAGAAAACTCGGCGATTC 59.399 50.000 11.27 12.03 41.25 2.52
441 442 2.494073 AGAGAGAAAACTCGGCGATTCT 59.506 45.455 20.55 20.55 41.25 2.40
442 443 3.056465 AGAGAGAAAACTCGGCGATTCTT 60.056 43.478 21.14 5.63 41.25 2.52
444 445 3.433615 AGAGAAAACTCGGCGATTCTTTG 59.566 43.478 21.14 7.72 32.54 2.77
445 446 2.095718 AGAAAACTCGGCGATTCTTTGC 60.096 45.455 16.21 10.46 0.00 3.68
446 447 1.523758 AAACTCGGCGATTCTTTGCT 58.476 45.000 11.27 0.00 32.36 3.91
447 448 1.523758 AACTCGGCGATTCTTTGCTT 58.476 45.000 11.27 0.00 32.36 3.91
448 449 1.079503 ACTCGGCGATTCTTTGCTTC 58.920 50.000 11.27 0.00 32.36 3.86
450 451 1.060937 CGGCGATTCTTTGCTTCCG 59.939 57.895 0.00 0.00 32.36 4.30
451 452 1.429423 GGCGATTCTTTGCTTCCGG 59.571 57.895 0.00 0.00 32.36 5.14
469 470 1.962807 CGGCTCATCCTCTTCTCTGAT 59.037 52.381 0.00 0.00 0.00 2.90
476 477 6.646240 GCTCATCCTCTTCTCTGATTCAATAC 59.354 42.308 0.00 0.00 0.00 1.89
477 478 7.666063 TCATCCTCTTCTCTGATTCAATACA 57.334 36.000 0.00 0.00 0.00 2.29
503 504 1.395608 CGAGCGCTCCGGAAATAAAAA 59.604 47.619 30.66 0.00 0.00 1.94
525 526 4.927782 AGCGCGTTGTTCAGGGCA 62.928 61.111 8.43 0.00 46.80 5.36
607 617 5.645497 TCTTGGCTAGCTTCTCTTTTTGATC 59.355 40.000 15.72 0.00 0.00 2.92
622 645 1.204146 TGATCTGCCTTGGACCTACC 58.796 55.000 0.00 0.00 39.54 3.18
723 752 5.434408 TGTTCTTGCTAGAGATGATGCAAT 58.566 37.500 0.00 0.00 43.17 3.56
782 9293 5.652994 TTCCAAAACCATAGTACCAATGC 57.347 39.130 0.00 0.00 0.00 3.56
783 9294 4.020543 TCCAAAACCATAGTACCAATGCC 58.979 43.478 0.00 0.00 0.00 4.40
784 9295 4.023291 CCAAAACCATAGTACCAATGCCT 58.977 43.478 0.00 0.00 0.00 4.75
785 9296 4.142182 CCAAAACCATAGTACCAATGCCTG 60.142 45.833 0.00 0.00 0.00 4.85
817 9349 9.403583 TGAATACTTCAGTTTCTAAAAACCACT 57.596 29.630 0.00 0.00 44.87 4.00
843 9380 7.966204 TGTTTTTAAACTTCGGTTCAGAAAGAG 59.034 33.333 6.87 0.00 39.59 2.85
902 9444 0.974383 AGGAACACGGTGTTAGGGAG 59.026 55.000 25.13 0.00 41.28 4.30
904 9446 1.553704 GGAACACGGTGTTAGGGAGAT 59.446 52.381 25.13 1.83 41.28 2.75
944 9488 7.309177 TGGTGGTATTTATTGATGTCAAAACG 58.691 34.615 0.00 0.00 39.55 3.60
947 9491 7.327275 GTGGTATTTATTGATGTCAAAACGCAA 59.673 33.333 0.00 0.00 39.55 4.85
953 9497 4.103365 TGATGTCAAAACGCAACAAACT 57.897 36.364 0.00 0.00 0.00 2.66
957 9518 5.257345 TGTCAAAACGCAACAAACTTTTC 57.743 34.783 0.00 0.00 0.00 2.29
964 9525 4.058817 ACGCAACAAACTTTTCAAAACCA 58.941 34.783 0.00 0.00 0.00 3.67
968 9529 6.035542 CGCAACAAACTTTTCAAAACCATAGT 59.964 34.615 0.00 0.00 0.00 2.12
969 9530 7.412455 CGCAACAAACTTTTCAAAACCATAGTT 60.412 33.333 0.00 0.00 38.03 2.24
1036 9604 6.012658 TCTTATTGCAGAAATGTGTGGAAC 57.987 37.500 0.00 0.00 31.03 3.62
1098 9666 0.969149 TGGTGAGAGTCGACATTGCT 59.031 50.000 19.50 9.08 0.00 3.91
1127 9695 3.968724 GCAAGAAGTAGCGTTTTGTCAAG 59.031 43.478 0.00 0.00 0.00 3.02
1180 9748 5.068591 CCTGATCTCAAATTTCATGCCATGA 59.931 40.000 2.53 2.53 37.55 3.07
1224 9792 0.512952 GAGTCACACGCCACATTGAC 59.487 55.000 0.00 0.00 38.95 3.18
1245 9813 2.437359 GCAATGGCGTCTCTGGCT 60.437 61.111 0.00 0.00 35.06 4.75
1292 9860 1.380403 CCACGCAGGAAACACACCAA 61.380 55.000 0.00 0.00 41.22 3.67
1487 10055 7.177216 GGATATGGATGGATTTTTCAGTGCATA 59.823 37.037 0.00 0.00 0.00 3.14
1502 11974 2.108168 TGCATACCCTAGCGTTCTTCT 58.892 47.619 0.00 0.00 0.00 2.85
1531 12003 6.061022 TCACAAGGCTCCATCTACAAAATA 57.939 37.500 0.00 0.00 0.00 1.40
1697 12183 9.847224 AGAAGTCTACTTATCCAAGTTGAAAAA 57.153 29.630 3.87 0.00 44.46 1.94
1782 12268 0.756294 CCCCCTTGTGTTTTGGTTCC 59.244 55.000 0.00 0.00 0.00 3.62
1822 12308 1.126488 ATCCCTCATCTGTGACGCAT 58.874 50.000 0.00 0.00 0.00 4.73
1942 12428 4.327854 GCCGATAGCTGTTATATTGTGC 57.672 45.455 0.00 0.00 38.99 4.57
1958 12474 3.980646 TGTGCTTTTGTGCTATTTCGT 57.019 38.095 0.00 0.00 0.00 3.85
1959 12475 5.425577 TTGTGCTTTTGTGCTATTTCGTA 57.574 34.783 0.00 0.00 0.00 3.43
1960 12476 4.778904 TGTGCTTTTGTGCTATTTCGTAC 58.221 39.130 0.00 0.00 0.00 3.67
1961 12477 3.838550 GTGCTTTTGTGCTATTTCGTACG 59.161 43.478 9.53 9.53 0.00 3.67
1962 12478 3.495377 TGCTTTTGTGCTATTTCGTACGT 59.505 39.130 16.05 0.00 0.00 3.57
1963 12479 4.685165 TGCTTTTGTGCTATTTCGTACGTA 59.315 37.500 16.05 1.99 0.00 3.57
1964 12480 5.011370 GCTTTTGTGCTATTTCGTACGTAC 58.989 41.667 15.90 15.90 0.00 3.67
1965 12481 5.388682 GCTTTTGTGCTATTTCGTACGTACA 60.389 40.000 24.50 9.77 0.00 2.90
2199 12717 2.828520 TGCAACCAGAAGGAAAACAACA 59.171 40.909 0.00 0.00 38.69 3.33
2450 13009 8.352808 ACCCCTTATAATTTAGGTATTGGTGA 57.647 34.615 0.00 0.00 0.00 4.02
2488 13047 0.257039 ACATCCATGGCAAGAGGGTC 59.743 55.000 6.96 0.00 0.00 4.46
2591 13150 3.569701 TGGCAATTGAAAGAGTTCCAGTC 59.430 43.478 10.34 0.00 32.28 3.51
2592 13151 3.823304 GGCAATTGAAAGAGTTCCAGTCT 59.177 43.478 10.34 0.00 32.28 3.24
2593 13152 5.003804 GGCAATTGAAAGAGTTCCAGTCTA 58.996 41.667 10.34 0.00 32.28 2.59
2703 13262 3.817084 CAGACGGTCAATATCCATGCAAT 59.183 43.478 11.27 0.00 0.00 3.56
3017 13576 0.171231 GAGGCAAATCTTTGGTCCGC 59.829 55.000 4.93 0.00 38.57 5.54
3133 13693 4.156739 GTCTTGATAAAAGGCCACAAGAGG 59.843 45.833 5.01 0.00 44.42 3.69
3185 13745 2.928116 GGACTTAGACAAATTCGGTCCG 59.072 50.000 4.39 4.39 35.31 4.79
3250 13815 3.142174 GTTTCCCTTCTCACAACTGGAG 58.858 50.000 0.00 0.00 0.00 3.86
3278 13843 8.917088 CCTCAATTAACATACCTCAAATCCATT 58.083 33.333 0.00 0.00 0.00 3.16
3295 13860 7.414222 AATCCATTCAAACTCATGCAACTAT 57.586 32.000 0.00 0.00 0.00 2.12
3362 13928 3.013921 TGCCATCGGACTACCAAAAATC 58.986 45.455 0.00 0.00 35.59 2.17
3401 13967 5.622007 GCATGCTAGCTATGGACTAGAAGAG 60.622 48.000 17.23 0.00 39.64 2.85
3403 13969 3.119990 GCTAGCTATGGACTAGAAGAGCG 60.120 52.174 7.70 0.00 39.64 5.03
3438 14004 2.035626 CCTTCCCGGCACCATTGT 59.964 61.111 0.00 0.00 0.00 2.71
3460 14026 1.035385 TCCATCTCGCGGAAGTAGCA 61.035 55.000 6.13 0.00 34.19 3.49
3470 14036 2.338500 CGGAAGTAGCAGTTGAAGACC 58.662 52.381 0.00 0.00 0.00 3.85
3481 14047 4.248859 CAGTTGAAGACCCAGTACAGATG 58.751 47.826 0.00 0.00 0.00 2.90
3579 14149 0.106708 GCATGGACAGCCCGATTCTA 59.893 55.000 0.00 0.00 37.93 2.10
3657 14227 1.557269 ATGGCTTCCTTCTCTGCGGT 61.557 55.000 0.00 0.00 0.00 5.68
3796 14503 1.361197 TCTAGTGGACTGGTGATGGGA 59.639 52.381 0.00 0.00 0.00 4.37
3826 14533 0.253347 TGGAAGGCTCCCAAGAGGAT 60.253 55.000 0.00 0.00 46.33 3.24
3827 14534 0.922626 GGAAGGCTCCCAAGAGGATT 59.077 55.000 0.00 0.00 46.33 3.01
3848 14555 1.811558 GCAATTATCCAGCGCAGGAGA 60.812 52.381 26.31 19.99 41.90 3.71
3853 14560 0.543277 ATCCAGCGCAGGAGAATTCA 59.457 50.000 26.31 1.86 41.90 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.170320 GCAGATGCAGATCTTTTTCTTTTGAAA 59.830 33.333 0.00 0.00 40.46 2.69
33 34 6.643770 GCAGATGCAGATCTTTTTCTTTTGAA 59.356 34.615 0.00 0.00 36.75 2.69
35 36 5.347907 GGCAGATGCAGATCTTTTTCTTTTG 59.652 40.000 7.19 0.00 44.36 2.44
37 38 4.081807 GGGCAGATGCAGATCTTTTTCTTT 60.082 41.667 7.19 0.00 44.36 2.52
38 39 3.446516 GGGCAGATGCAGATCTTTTTCTT 59.553 43.478 7.19 0.00 44.36 2.52
39 40 3.022406 GGGCAGATGCAGATCTTTTTCT 58.978 45.455 7.19 0.00 44.36 2.52
40 41 2.756760 TGGGCAGATGCAGATCTTTTTC 59.243 45.455 7.19 0.00 44.36 2.29
44 45 0.465824 GCTGGGCAGATGCAGATCTT 60.466 55.000 7.19 0.00 44.36 2.40
45 46 1.148723 GCTGGGCAGATGCAGATCT 59.851 57.895 7.19 0.00 44.36 2.75
46 47 1.897615 GGCTGGGCAGATGCAGATC 60.898 63.158 7.19 0.00 44.36 2.75
47 48 1.058428 TAGGCTGGGCAGATGCAGAT 61.058 55.000 7.19 0.00 44.36 2.90
48 49 1.690283 TAGGCTGGGCAGATGCAGA 60.690 57.895 7.19 0.00 44.36 4.26
49 50 1.227883 CTAGGCTGGGCAGATGCAG 60.228 63.158 7.19 0.00 44.36 4.41
50 51 2.749584 CCTAGGCTGGGCAGATGCA 61.750 63.158 3.14 0.00 44.36 3.96
51 52 2.112718 CCTAGGCTGGGCAGATGC 59.887 66.667 3.14 0.00 41.14 3.91
52 53 2.834688 CCCTAGGCTGGGCAGATG 59.165 66.667 12.12 0.00 40.84 2.90
60 61 4.308526 CAGCACAACCCTAGGCTG 57.691 61.111 2.05 5.36 46.47 4.85
61 62 1.986413 CTCAGCACAACCCTAGGCT 59.014 57.895 2.05 0.00 36.99 4.58
62 63 1.746991 GCTCAGCACAACCCTAGGC 60.747 63.158 2.05 0.00 0.00 3.93
64 65 1.448540 CGGCTCAGCACAACCCTAG 60.449 63.158 0.00 0.00 0.00 3.02
83 84 4.680237 TTCGTGCCTGCTGGACGG 62.680 66.667 23.65 10.02 37.42 4.79
84 85 3.114616 CTTCGTGCCTGCTGGACG 61.115 66.667 14.77 18.44 37.83 4.79
85 86 2.743928 CCTTCGTGCCTGCTGGAC 60.744 66.667 14.77 7.85 34.57 4.02
86 87 3.241530 ACCTTCGTGCCTGCTGGA 61.242 61.111 14.77 0.00 34.57 3.86
87 88 3.052082 CACCTTCGTGCCTGCTGG 61.052 66.667 5.03 5.03 32.04 4.85
90 91 2.743928 CCTCACCTTCGTGCCTGC 60.744 66.667 0.00 0.00 40.04 4.85
91 92 2.743928 GCCTCACCTTCGTGCCTG 60.744 66.667 0.00 0.00 40.04 4.85
92 93 4.021925 GGCCTCACCTTCGTGCCT 62.022 66.667 0.00 0.00 40.04 4.75
95 96 2.266055 GAGGGCCTCACCTTCGTG 59.734 66.667 28.55 0.00 42.10 4.35
98 99 2.860972 GAAGCGAGGGCCTCACCTTC 62.861 65.000 31.39 31.39 42.10 3.46
100 101 3.394836 GAAGCGAGGGCCTCACCT 61.395 66.667 31.69 23.30 45.57 4.00
101 102 4.821589 CGAAGCGAGGGCCTCACC 62.822 72.222 31.69 21.50 41.24 4.02
114 115 0.179171 CATGCAGAAGCCAAGCGAAG 60.179 55.000 0.00 0.00 41.13 3.79
116 117 2.693762 GCATGCAGAAGCCAAGCGA 61.694 57.895 14.21 0.00 41.13 4.93
117 118 2.202570 GCATGCAGAAGCCAAGCG 60.203 61.111 14.21 0.00 41.13 4.68
123 124 0.455005 GAAAGAGGGCATGCAGAAGC 59.545 55.000 21.36 0.49 42.57 3.86
124 125 2.015587 GAGAAAGAGGGCATGCAGAAG 58.984 52.381 21.36 0.00 0.00 2.85
125 126 1.632409 AGAGAAAGAGGGCATGCAGAA 59.368 47.619 21.36 0.00 0.00 3.02
127 128 1.666054 GAGAGAAAGAGGGCATGCAG 58.334 55.000 21.36 0.00 0.00 4.41
129 130 0.545646 AGGAGAGAAAGAGGGCATGC 59.454 55.000 9.90 9.90 0.00 4.06
130 131 1.202510 CGAGGAGAGAAAGAGGGCATG 60.203 57.143 0.00 0.00 0.00 4.06
131 132 1.118838 CGAGGAGAGAAAGAGGGCAT 58.881 55.000 0.00 0.00 0.00 4.40
132 133 1.608717 GCGAGGAGAGAAAGAGGGCA 61.609 60.000 0.00 0.00 0.00 5.36
133 134 1.142965 GCGAGGAGAGAAAGAGGGC 59.857 63.158 0.00 0.00 0.00 5.19
134 135 1.435515 CGCGAGGAGAGAAAGAGGG 59.564 63.158 0.00 0.00 0.00 4.30
135 136 1.226831 GCGCGAGGAGAGAAAGAGG 60.227 63.158 12.10 0.00 0.00 3.69
136 137 0.525242 CAGCGCGAGGAGAGAAAGAG 60.525 60.000 12.10 0.00 0.00 2.85
137 138 1.244697 ACAGCGCGAGGAGAGAAAGA 61.245 55.000 12.10 0.00 0.00 2.52
138 139 0.800300 GACAGCGCGAGGAGAGAAAG 60.800 60.000 12.10 0.00 0.00 2.62
139 140 1.213013 GACAGCGCGAGGAGAGAAA 59.787 57.895 12.10 0.00 0.00 2.52
140 141 2.878429 GACAGCGCGAGGAGAGAA 59.122 61.111 12.10 0.00 0.00 2.87
141 142 3.500642 CGACAGCGCGAGGAGAGA 61.501 66.667 12.10 0.00 0.00 3.10
142 143 4.544689 CCGACAGCGCGAGGAGAG 62.545 72.222 12.10 0.00 35.83 3.20
152 153 2.914777 GATCAGACCCTGCCGACAGC 62.915 65.000 0.00 0.00 43.02 4.40
153 154 1.142748 GATCAGACCCTGCCGACAG 59.857 63.158 0.00 0.00 44.05 3.51
155 156 0.531532 CATGATCAGACCCTGCCGAC 60.532 60.000 0.09 0.00 0.00 4.79
156 157 0.977627 ACATGATCAGACCCTGCCGA 60.978 55.000 0.00 0.00 0.00 5.54
157 158 0.812811 CACATGATCAGACCCTGCCG 60.813 60.000 0.00 0.00 0.00 5.69
159 160 1.099879 GGCACATGATCAGACCCTGC 61.100 60.000 0.00 3.18 0.00 4.85
160 161 0.465097 GGGCACATGATCAGACCCTG 60.465 60.000 14.74 5.07 34.34 4.45
161 162 0.622738 AGGGCACATGATCAGACCCT 60.623 55.000 17.60 17.60 42.97 4.34
162 163 0.179034 GAGGGCACATGATCAGACCC 60.179 60.000 14.35 14.35 37.63 4.46
163 164 0.835941 AGAGGGCACATGATCAGACC 59.164 55.000 0.00 0.00 0.00 3.85
164 165 2.706339 AAGAGGGCACATGATCAGAC 57.294 50.000 0.00 0.00 0.00 3.51
165 166 2.092753 GGAAAGAGGGCACATGATCAGA 60.093 50.000 0.00 0.00 0.00 3.27
166 167 2.295885 GGAAAGAGGGCACATGATCAG 58.704 52.381 0.00 0.00 0.00 2.90
167 168 1.634973 TGGAAAGAGGGCACATGATCA 59.365 47.619 0.00 0.00 0.00 2.92
169 170 1.064166 CCTGGAAAGAGGGCACATGAT 60.064 52.381 0.00 0.00 0.00 2.45
171 172 0.329261 TCCTGGAAAGAGGGCACATG 59.671 55.000 0.00 0.00 33.41 3.21
174 175 0.106967 GGATCCTGGAAAGAGGGCAC 60.107 60.000 3.84 0.00 33.41 5.01
175 176 1.626356 CGGATCCTGGAAAGAGGGCA 61.626 60.000 10.75 0.00 33.41 5.36
176 177 1.147153 CGGATCCTGGAAAGAGGGC 59.853 63.158 10.75 0.00 33.41 5.19
177 178 0.912486 AACGGATCCTGGAAAGAGGG 59.088 55.000 10.75 0.00 33.41 4.30
179 180 2.770164 ACAACGGATCCTGGAAAGAG 57.230 50.000 10.75 0.00 0.00 2.85
180 181 2.290071 GGAACAACGGATCCTGGAAAGA 60.290 50.000 10.75 0.00 33.40 2.52
181 182 2.084546 GGAACAACGGATCCTGGAAAG 58.915 52.381 10.75 0.00 33.40 2.62
182 183 1.609580 CGGAACAACGGATCCTGGAAA 60.610 52.381 10.75 0.00 33.98 3.13
183 184 0.036765 CGGAACAACGGATCCTGGAA 60.037 55.000 10.75 0.00 33.98 3.53
185 186 2.106683 GCGGAACAACGGATCCTGG 61.107 63.158 10.75 1.23 33.98 4.45
186 187 2.452813 CGCGGAACAACGGATCCTG 61.453 63.158 10.75 4.69 33.98 3.86
187 188 1.956629 ATCGCGGAACAACGGATCCT 61.957 55.000 10.75 0.00 33.98 3.24
188 189 0.249155 TATCGCGGAACAACGGATCC 60.249 55.000 6.13 0.00 32.86 3.36
190 191 0.249322 CCTATCGCGGAACAACGGAT 60.249 55.000 6.13 0.00 0.00 4.18
192 193 0.458889 TTCCTATCGCGGAACAACGG 60.459 55.000 6.13 0.00 38.12 4.44
193 194 0.921347 CTTCCTATCGCGGAACAACG 59.079 55.000 6.13 0.00 38.12 4.10
194 195 2.288961 TCTTCCTATCGCGGAACAAC 57.711 50.000 6.13 0.00 38.12 3.32
195 196 2.494471 TCTTCTTCCTATCGCGGAACAA 59.506 45.455 6.13 0.00 38.12 2.83
197 198 2.733517 CTCTTCTTCCTATCGCGGAAC 58.266 52.381 6.13 0.00 38.12 3.62
198 199 1.067212 GCTCTTCTTCCTATCGCGGAA 59.933 52.381 6.13 0.02 40.64 4.30
199 200 0.669077 GCTCTTCTTCCTATCGCGGA 59.331 55.000 6.13 0.00 0.00 5.54
200 201 0.385751 TGCTCTTCTTCCTATCGCGG 59.614 55.000 6.13 0.00 0.00 6.46
202 203 1.539280 GGGTGCTCTTCTTCCTATCGC 60.539 57.143 0.00 0.00 0.00 4.58
204 205 1.757699 ACGGGTGCTCTTCTTCCTATC 59.242 52.381 0.00 0.00 0.00 2.08
205 206 1.867363 ACGGGTGCTCTTCTTCCTAT 58.133 50.000 0.00 0.00 0.00 2.57
206 207 1.640917 AACGGGTGCTCTTCTTCCTA 58.359 50.000 0.00 0.00 0.00 2.94
208 209 2.074576 GTAAACGGGTGCTCTTCTTCC 58.925 52.381 0.00 0.00 0.00 3.46
209 210 2.074576 GGTAAACGGGTGCTCTTCTTC 58.925 52.381 0.00 0.00 0.00 2.87
210 211 1.418637 TGGTAAACGGGTGCTCTTCTT 59.581 47.619 0.00 0.00 0.00 2.52
212 213 1.439679 CTGGTAAACGGGTGCTCTTC 58.560 55.000 0.00 0.00 0.00 2.87
213 214 0.605589 GCTGGTAAACGGGTGCTCTT 60.606 55.000 0.00 0.00 0.00 2.85
214 215 1.003718 GCTGGTAAACGGGTGCTCT 60.004 57.895 0.00 0.00 0.00 4.09
215 216 1.003718 AGCTGGTAAACGGGTGCTC 60.004 57.895 0.00 0.00 34.21 4.26
217 218 3.263941 CAGCTGGTAAACGGGTGC 58.736 61.111 5.57 0.00 45.89 5.01
222 223 3.799755 GCCGGCAGCTGGTAAACG 61.800 66.667 24.80 0.00 38.99 3.60
223 224 3.440415 GGCCGGCAGCTGGTAAAC 61.440 66.667 30.85 4.56 43.05 2.01
224 225 3.622060 GAGGCCGGCAGCTGGTAAA 62.622 63.158 30.85 0.00 43.05 2.01
225 226 4.096003 GAGGCCGGCAGCTGGTAA 62.096 66.667 30.85 0.00 43.05 2.85
228 229 4.232878 CTAGAGGCCGGCAGCTGG 62.233 72.222 30.85 21.66 43.05 4.85
229 230 4.906792 GCTAGAGGCCGGCAGCTG 62.907 72.222 30.85 18.04 43.05 4.24
238 239 3.470888 TCCGGCTTGGCTAGAGGC 61.471 66.667 0.00 0.00 37.80 4.70
239 240 2.501610 GTCCGGCTTGGCTAGAGG 59.498 66.667 0.00 2.44 37.80 3.69
240 241 2.105128 CGTCCGGCTTGGCTAGAG 59.895 66.667 0.00 0.00 37.80 2.43
242 243 4.530857 CCCGTCCGGCTTGGCTAG 62.531 72.222 0.00 0.00 37.80 3.42
252 253 4.770874 AATCAACCGCCCCGTCCG 62.771 66.667 0.00 0.00 0.00 4.79
253 254 1.974875 AAAATCAACCGCCCCGTCC 60.975 57.895 0.00 0.00 0.00 4.79
254 255 1.211709 CAAAATCAACCGCCCCGTC 59.788 57.895 0.00 0.00 0.00 4.79
255 256 0.824182 TTCAAAATCAACCGCCCCGT 60.824 50.000 0.00 0.00 0.00 5.28
257 258 1.067846 GTCTTCAAAATCAACCGCCCC 60.068 52.381 0.00 0.00 0.00 5.80
258 259 1.067846 GGTCTTCAAAATCAACCGCCC 60.068 52.381 0.00 0.00 0.00 6.13
262 263 2.607038 GCCACGGTCTTCAAAATCAACC 60.607 50.000 0.00 0.00 0.00 3.77
264 265 2.293122 CTGCCACGGTCTTCAAAATCAA 59.707 45.455 0.00 0.00 0.00 2.57
266 267 1.880027 ACTGCCACGGTCTTCAAAATC 59.120 47.619 0.00 0.00 0.00 2.17
267 268 1.608590 CACTGCCACGGTCTTCAAAAT 59.391 47.619 0.00 0.00 0.00 1.82
268 269 1.021202 CACTGCCACGGTCTTCAAAA 58.979 50.000 0.00 0.00 0.00 2.44
271 272 1.112916 TCTCACTGCCACGGTCTTCA 61.113 55.000 0.00 0.00 0.00 3.02
272 273 0.667792 GTCTCACTGCCACGGTCTTC 60.668 60.000 0.00 0.00 0.00 2.87
273 274 1.367840 GTCTCACTGCCACGGTCTT 59.632 57.895 0.00 0.00 0.00 3.01
275 276 2.416244 TTCGTCTCACTGCCACGGTC 62.416 60.000 0.00 0.00 34.24 4.79
276 277 2.495409 TTCGTCTCACTGCCACGGT 61.495 57.895 0.00 0.00 34.24 4.83
277 278 2.022129 GTTCGTCTCACTGCCACGG 61.022 63.158 0.00 0.00 34.24 4.94
279 280 0.249911 AAGGTTCGTCTCACTGCCAC 60.250 55.000 0.00 0.00 0.00 5.01
280 281 0.468226 AAAGGTTCGTCTCACTGCCA 59.532 50.000 0.00 0.00 0.00 4.92
281 282 1.531578 GAAAAGGTTCGTCTCACTGCC 59.468 52.381 0.00 0.00 0.00 4.85
282 283 2.032808 GTGAAAAGGTTCGTCTCACTGC 60.033 50.000 0.00 0.00 36.46 4.40
283 284 3.194861 TGTGAAAAGGTTCGTCTCACTG 58.805 45.455 0.00 0.00 37.79 3.66
284 285 3.458189 CTGTGAAAAGGTTCGTCTCACT 58.542 45.455 0.00 0.00 37.79 3.41
288 289 1.141053 AGCCTGTGAAAAGGTTCGTCT 59.859 47.619 0.00 0.00 39.75 4.18
290 291 1.308998 CAGCCTGTGAAAAGGTTCGT 58.691 50.000 0.00 0.00 39.75 3.85
291 292 0.040067 GCAGCCTGTGAAAAGGTTCG 60.040 55.000 0.00 0.00 39.75 3.95
292 293 1.032014 TGCAGCCTGTGAAAAGGTTC 58.968 50.000 0.00 0.00 39.75 3.62
293 294 1.484038 TTGCAGCCTGTGAAAAGGTT 58.516 45.000 0.00 0.00 39.75 3.50
295 296 2.825861 ATTTGCAGCCTGTGAAAAGG 57.174 45.000 0.00 0.00 37.09 3.11
296 297 3.062042 GGAATTTGCAGCCTGTGAAAAG 58.938 45.455 0.00 0.00 37.09 2.27
297 298 2.699846 AGGAATTTGCAGCCTGTGAAAA 59.300 40.909 0.00 0.00 38.13 2.29
298 299 2.297033 GAGGAATTTGCAGCCTGTGAAA 59.703 45.455 4.51 0.00 30.70 2.69
299 300 1.888512 GAGGAATTTGCAGCCTGTGAA 59.111 47.619 4.51 0.00 30.70 3.18
303 304 0.449388 GTCGAGGAATTTGCAGCCTG 59.551 55.000 4.51 0.00 30.70 4.85
304 305 0.326264 AGTCGAGGAATTTGCAGCCT 59.674 50.000 0.00 0.00 33.97 4.58
306 307 2.096013 GGTAAGTCGAGGAATTTGCAGC 59.904 50.000 0.00 0.00 0.00 5.25
307 308 3.334691 TGGTAAGTCGAGGAATTTGCAG 58.665 45.455 0.00 0.00 0.00 4.41
308 309 3.334691 CTGGTAAGTCGAGGAATTTGCA 58.665 45.455 0.00 0.00 0.00 4.08
309 310 2.678336 CCTGGTAAGTCGAGGAATTTGC 59.322 50.000 0.00 0.00 43.44 3.68
310 311 2.678336 GCCTGGTAAGTCGAGGAATTTG 59.322 50.000 0.00 0.00 43.44 2.32
312 313 1.134788 CGCCTGGTAAGTCGAGGAATT 60.135 52.381 0.00 0.00 43.44 2.17
313 314 0.460311 CGCCTGGTAAGTCGAGGAAT 59.540 55.000 0.00 0.00 43.44 3.01
314 315 1.888018 CGCCTGGTAAGTCGAGGAA 59.112 57.895 0.00 0.00 43.44 3.36
315 316 2.707849 GCGCCTGGTAAGTCGAGGA 61.708 63.158 0.00 0.00 43.44 3.71
317 318 2.579787 CGCGCCTGGTAAGTCGAG 60.580 66.667 0.00 0.00 0.00 4.04
318 319 3.332493 GACGCGCCTGGTAAGTCGA 62.332 63.158 5.73 0.00 0.00 4.20
320 321 2.879462 CGACGCGCCTGGTAAGTC 60.879 66.667 5.73 0.00 0.00 3.01
321 322 3.621892 GACGACGCGCCTGGTAAGT 62.622 63.158 5.73 0.00 0.00 2.24
327 328 4.746951 TGTACGACGACGCGCCTG 62.747 66.667 5.73 0.00 43.96 4.85
328 329 4.748679 GTGTACGACGACGCGCCT 62.749 66.667 5.73 0.00 43.96 5.52
329 330 3.367051 TAGTGTACGACGACGCGCC 62.367 63.158 5.73 0.00 43.96 6.53
330 331 2.096406 TAGTGTACGACGACGCGC 59.904 61.111 5.73 0.00 43.96 6.86
331 332 0.247419 ATGTAGTGTACGACGACGCG 60.247 55.000 3.53 3.53 43.96 6.01
332 333 2.029728 AGTATGTAGTGTACGACGACGC 59.970 50.000 7.30 2.30 43.96 5.19
333 334 3.598003 CGAGTATGTAGTGTACGACGACG 60.598 52.174 5.58 5.58 45.75 5.12
334 335 3.304559 ACGAGTATGTAGTGTACGACGAC 59.695 47.826 0.00 0.00 34.08 4.34
336 337 3.304293 TGACGAGTATGTAGTGTACGACG 59.696 47.826 0.00 0.00 35.08 5.12
338 339 7.719778 ATATTGACGAGTATGTAGTGTACGA 57.280 36.000 0.00 0.00 0.00 3.43
342 343 8.663025 CGGTATATATTGACGAGTATGTAGTGT 58.337 37.037 0.00 0.00 0.00 3.55
343 344 8.121086 CCGGTATATATTGACGAGTATGTAGTG 58.879 40.741 0.00 0.00 0.00 2.74
344 345 7.826252 ACCGGTATATATTGACGAGTATGTAGT 59.174 37.037 4.49 0.00 0.00 2.73
345 346 8.121086 CACCGGTATATATTGACGAGTATGTAG 58.879 40.741 6.87 0.00 0.00 2.74
346 347 7.607607 ACACCGGTATATATTGACGAGTATGTA 59.392 37.037 6.87 0.00 0.00 2.29
347 348 6.432162 ACACCGGTATATATTGACGAGTATGT 59.568 38.462 6.87 0.00 0.00 2.29
348 349 6.745907 CACACCGGTATATATTGACGAGTATG 59.254 42.308 6.87 0.00 0.00 2.39
349 350 6.432162 ACACACCGGTATATATTGACGAGTAT 59.568 38.462 6.87 0.00 0.00 2.12
350 351 5.764686 ACACACCGGTATATATTGACGAGTA 59.235 40.000 6.87 0.00 0.00 2.59
351 352 4.581824 ACACACCGGTATATATTGACGAGT 59.418 41.667 6.87 0.00 0.00 4.18
352 353 5.117355 ACACACCGGTATATATTGACGAG 57.883 43.478 6.87 0.00 0.00 4.18
353 354 4.579753 TGACACACCGGTATATATTGACGA 59.420 41.667 6.87 0.00 0.00 4.20
355 356 5.174398 CGTTGACACACCGGTATATATTGAC 59.826 44.000 6.87 0.00 0.00 3.18
356 357 5.283294 CGTTGACACACCGGTATATATTGA 58.717 41.667 6.87 0.00 0.00 2.57
358 359 4.053295 GCGTTGACACACCGGTATATATT 58.947 43.478 6.87 0.00 0.00 1.28
359 360 3.645884 GCGTTGACACACCGGTATATAT 58.354 45.455 6.87 0.00 0.00 0.86
360 361 2.541383 CGCGTTGACACACCGGTATATA 60.541 50.000 6.87 0.00 0.00 0.86
362 363 0.456482 CGCGTTGACACACCGGTATA 60.456 55.000 6.87 0.00 0.00 1.47
363 364 1.735198 CGCGTTGACACACCGGTAT 60.735 57.895 6.87 0.00 0.00 2.73
364 365 2.354891 CGCGTTGACACACCGGTA 60.355 61.111 6.87 0.00 0.00 4.02
367 368 3.698463 GACCGCGTTGACACACCG 61.698 66.667 4.92 0.00 0.00 4.94
368 369 3.698463 CGACCGCGTTGACACACC 61.698 66.667 4.92 0.00 0.00 4.16
381 382 1.838568 GAAACAACGGCCTCACGACC 61.839 60.000 0.00 0.00 37.61 4.79
382 383 0.878961 AGAAACAACGGCCTCACGAC 60.879 55.000 0.00 0.00 37.61 4.34
383 384 0.675083 TAGAAACAACGGCCTCACGA 59.325 50.000 0.00 0.00 37.61 4.35
386 387 0.675083 TCGTAGAAACAACGGCCTCA 59.325 50.000 0.00 0.00 40.68 3.86
388 389 0.677842 AGTCGTAGAAACAACGGCCT 59.322 50.000 0.00 0.00 45.74 5.19
389 390 1.193874 CAAGTCGTAGAAACAACGGCC 59.806 52.381 0.00 0.00 45.74 6.13
391 392 2.476821 ACCAAGTCGTAGAAACAACGG 58.523 47.619 0.00 0.00 39.69 4.44
392 393 4.033129 TGAAACCAAGTCGTAGAAACAACG 59.967 41.667 0.00 0.00 39.69 4.10
394 395 6.053005 AGATGAAACCAAGTCGTAGAAACAA 58.947 36.000 0.00 0.00 39.69 2.83
395 396 5.607477 AGATGAAACCAAGTCGTAGAAACA 58.393 37.500 0.00 0.00 39.69 2.83
396 397 5.694910 TGAGATGAAACCAAGTCGTAGAAAC 59.305 40.000 0.00 0.00 39.69 2.78
397 398 5.849510 TGAGATGAAACCAAGTCGTAGAAA 58.150 37.500 0.00 0.00 39.69 2.52
400 401 5.060662 TCTGAGATGAAACCAAGTCGTAG 57.939 43.478 0.00 0.00 0.00 3.51
402 403 3.574396 TCTCTGAGATGAAACCAAGTCGT 59.426 43.478 2.58 0.00 0.00 4.34
403 404 4.082517 TCTCTCTGAGATGAAACCAAGTCG 60.083 45.833 8.00 0.00 33.35 4.18
405 406 5.815233 TTCTCTCTGAGATGAAACCAAGT 57.185 39.130 8.00 0.00 38.56 3.16
406 407 6.709846 AGTTTTCTCTCTGAGATGAAACCAAG 59.290 38.462 25.90 9.25 38.83 3.61
408 409 6.179906 AGTTTTCTCTCTGAGATGAAACCA 57.820 37.500 25.90 14.86 38.83 3.67
409 410 5.347364 CGAGTTTTCTCTCTGAGATGAAACC 59.653 44.000 25.90 20.05 44.16 3.27
410 411 5.347364 CCGAGTTTTCTCTCTGAGATGAAAC 59.653 44.000 24.08 24.08 44.16 2.78
412 413 4.619394 GCCGAGTTTTCTCTCTGAGATGAA 60.619 45.833 8.00 10.83 44.16 2.57
413 414 3.119316 GCCGAGTTTTCTCTCTGAGATGA 60.119 47.826 8.00 5.40 44.16 2.92
414 415 3.186119 GCCGAGTTTTCTCTCTGAGATG 58.814 50.000 8.00 3.08 44.16 2.90
416 417 1.200252 CGCCGAGTTTTCTCTCTGAGA 59.800 52.381 7.24 7.24 44.16 3.27
417 418 1.200252 TCGCCGAGTTTTCTCTCTGAG 59.800 52.381 0.00 0.00 44.16 3.35
418 419 1.244816 TCGCCGAGTTTTCTCTCTGA 58.755 50.000 0.00 0.00 44.16 3.27
419 420 2.285827 ATCGCCGAGTTTTCTCTCTG 57.714 50.000 0.00 0.00 44.16 3.35
420 421 2.494073 AGAATCGCCGAGTTTTCTCTCT 59.506 45.455 0.00 0.00 44.16 3.10
421 422 2.882324 AGAATCGCCGAGTTTTCTCTC 58.118 47.619 0.00 0.00 44.16 3.20
423 424 3.737305 CAAAGAATCGCCGAGTTTTCTC 58.263 45.455 2.26 0.00 43.01 2.87
424 425 2.095718 GCAAAGAATCGCCGAGTTTTCT 60.096 45.455 0.00 0.00 0.00 2.52
425 426 2.095718 AGCAAAGAATCGCCGAGTTTTC 60.096 45.455 0.00 0.00 0.00 2.29
426 427 1.880027 AGCAAAGAATCGCCGAGTTTT 59.120 42.857 0.00 0.00 0.00 2.43
427 428 1.523758 AGCAAAGAATCGCCGAGTTT 58.476 45.000 0.00 0.00 0.00 2.66
429 430 1.079503 GAAGCAAAGAATCGCCGAGT 58.920 50.000 0.00 0.00 0.00 4.18
430 431 0.375106 GGAAGCAAAGAATCGCCGAG 59.625 55.000 0.00 0.00 0.00 4.63
431 432 1.358725 CGGAAGCAAAGAATCGCCGA 61.359 55.000 0.00 0.00 39.62 5.54
433 434 1.429423 CCGGAAGCAAAGAATCGCC 59.571 57.895 0.00 0.00 0.00 5.54
434 435 1.226407 GCCGGAAGCAAAGAATCGC 60.226 57.895 5.05 0.00 42.97 4.58
444 445 0.531753 GAAGAGGATGAGCCGGAAGC 60.532 60.000 5.05 0.00 43.43 3.86
445 446 1.068434 GAGAAGAGGATGAGCCGGAAG 59.932 57.143 5.05 0.00 43.43 3.46
446 447 1.115467 GAGAAGAGGATGAGCCGGAA 58.885 55.000 5.05 0.00 43.43 4.30
447 448 0.260230 AGAGAAGAGGATGAGCCGGA 59.740 55.000 5.05 0.00 43.43 5.14
448 449 0.388659 CAGAGAAGAGGATGAGCCGG 59.611 60.000 0.00 0.00 43.43 6.13
450 451 3.387374 TGAATCAGAGAAGAGGATGAGCC 59.613 47.826 0.00 0.00 0.00 4.70
451 452 4.669206 TGAATCAGAGAAGAGGATGAGC 57.331 45.455 0.00 0.00 0.00 4.26
469 470 1.629013 CGCTCGTCTGCTGTATTGAA 58.371 50.000 0.00 0.00 0.00 2.69
503 504 1.016130 CCTGAACAACGCGCTCATCT 61.016 55.000 5.73 0.00 0.00 2.90
607 617 0.391263 GAACGGTAGGTCCAAGGCAG 60.391 60.000 0.00 0.00 35.57 4.85
673 702 2.403259 TCTTGTGCTGTGTGATGTACG 58.597 47.619 0.00 0.00 0.00 3.67
675 704 3.189080 GCATTCTTGTGCTGTGTGATGTA 59.811 43.478 0.00 0.00 41.82 2.29
676 705 2.030540 GCATTCTTGTGCTGTGTGATGT 60.031 45.455 0.00 0.00 41.82 3.06
677 706 2.030628 TGCATTCTTGTGCTGTGTGATG 60.031 45.455 0.34 0.00 45.27 3.07
680 709 2.495409 TTGCATTCTTGTGCTGTGTG 57.505 45.000 0.00 0.00 45.27 3.82
723 752 4.301072 ACTAGGCCAGCAAAAGTAATCA 57.699 40.909 5.01 0.00 0.00 2.57
817 9349 7.818642 TCTTTCTGAACCGAAGTTTAAAAACA 58.181 30.769 8.21 0.00 41.30 2.83
824 9356 4.381411 CTCCTCTTTCTGAACCGAAGTTT 58.619 43.478 0.00 0.00 35.94 2.66
825 9357 3.244249 CCTCCTCTTTCTGAACCGAAGTT 60.244 47.826 0.00 0.00 39.54 2.66
866 9405 8.458843 CCGTGTTCCTTTTAGTATTTGATTGAT 58.541 33.333 0.00 0.00 0.00 2.57
867 9406 7.446013 ACCGTGTTCCTTTTAGTATTTGATTGA 59.554 33.333 0.00 0.00 0.00 2.57
868 9407 7.537306 CACCGTGTTCCTTTTAGTATTTGATTG 59.463 37.037 0.00 0.00 0.00 2.67
869 9408 7.229907 ACACCGTGTTCCTTTTAGTATTTGATT 59.770 33.333 0.00 0.00 0.00 2.57
870 9409 6.713450 ACACCGTGTTCCTTTTAGTATTTGAT 59.287 34.615 0.00 0.00 0.00 2.57
871 9410 6.056884 ACACCGTGTTCCTTTTAGTATTTGA 58.943 36.000 0.00 0.00 0.00 2.69
872 9411 6.308371 ACACCGTGTTCCTTTTAGTATTTG 57.692 37.500 0.00 0.00 0.00 2.32
873 9412 6.947644 AACACCGTGTTCCTTTTAGTATTT 57.052 33.333 11.24 0.00 35.27 1.40
874 9413 6.652062 CCTAACACCGTGTTCCTTTTAGTATT 59.348 38.462 20.06 0.00 40.22 1.89
884 9423 0.971386 TCTCCCTAACACCGTGTTCC 59.029 55.000 20.06 0.00 40.22 3.62
919 9461 7.309177 CGTTTTGACATCAATAAATACCACCA 58.691 34.615 0.00 0.00 35.55 4.17
930 9474 5.108517 AGTTTGTTGCGTTTTGACATCAAT 58.891 33.333 0.00 0.00 35.55 2.57
942 9486 4.058817 TGGTTTTGAAAAGTTTGTTGCGT 58.941 34.783 0.00 0.00 0.00 5.24
944 9488 7.302350 ACTATGGTTTTGAAAAGTTTGTTGC 57.698 32.000 0.00 0.00 0.00 4.17
1098 9666 0.457853 CGCTACTTCTTGCTGCCGTA 60.458 55.000 0.00 0.00 0.00 4.02
1127 9695 2.626780 GGCAAGTTTCTCCACCGCC 61.627 63.158 0.00 0.00 0.00 6.13
1180 9748 2.001269 ATGGGGCGCTAAGGAGGTT 61.001 57.895 7.64 0.00 0.00 3.50
1183 9751 2.592861 GCATGGGGCGCTAAGGAG 60.593 66.667 7.64 0.00 0.00 3.69
1208 9776 0.464554 TTGGTCAATGTGGCGTGTGA 60.465 50.000 0.00 0.00 0.00 3.58
1357 9925 1.394917 CTCACTGTCAATAGCGTTGCC 59.605 52.381 0.62 0.00 0.00 4.52
1399 9967 3.128764 GGCTTCTTCTCGGTTAAAATGGG 59.871 47.826 0.00 0.00 0.00 4.00
1487 10055 1.610886 GGCAAAGAAGAACGCTAGGGT 60.611 52.381 6.62 6.62 0.00 4.34
1531 12003 3.124921 CCGTTCGGCCAAGCGAAT 61.125 61.111 0.00 0.00 0.00 3.34
1585 12070 1.376424 CCAGACGAAGGTGCAGCAT 60.376 57.895 19.63 5.86 0.00 3.79
1697 12183 1.776975 AAGGCAGAGCACCTCAGCTT 61.777 55.000 9.05 0.00 46.75 3.74
1818 12304 2.606725 GTCTTGGTGAATGAGAGATGCG 59.393 50.000 0.00 0.00 0.00 4.73
1822 12308 6.672266 ACTAAAGTCTTGGTGAATGAGAGA 57.328 37.500 0.00 0.00 0.00 3.10
1942 12428 6.143349 TGTACGTACGAAATAGCACAAAAG 57.857 37.500 24.41 0.00 0.00 2.27
1958 12474 7.329226 GCTAGTCCAACATTAAGTTTGTACGTA 59.671 37.037 0.00 0.00 38.74 3.57
1959 12475 6.146673 GCTAGTCCAACATTAAGTTTGTACGT 59.853 38.462 0.00 0.00 38.74 3.57
1960 12476 6.146510 TGCTAGTCCAACATTAAGTTTGTACG 59.853 38.462 0.00 0.00 38.74 3.67
1961 12477 7.172703 AGTGCTAGTCCAACATTAAGTTTGTAC 59.827 37.037 0.00 0.00 38.74 2.90
1962 12478 7.221450 AGTGCTAGTCCAACATTAAGTTTGTA 58.779 34.615 0.00 0.00 38.74 2.41
1963 12479 6.062095 AGTGCTAGTCCAACATTAAGTTTGT 58.938 36.000 0.00 0.00 38.74 2.83
1964 12480 6.560253 AGTGCTAGTCCAACATTAAGTTTG 57.440 37.500 0.00 0.00 38.74 2.93
1965 12481 6.879458 CCTAGTGCTAGTCCAACATTAAGTTT 59.121 38.462 5.62 0.00 38.74 2.66
2158 12676 5.472148 TGCATCCAAATCTGATGAACAAAC 58.528 37.500 4.52 0.00 41.72 2.93
2478 13037 1.471684 CTTGCTTCATGACCCTCTTGC 59.528 52.381 0.00 0.00 0.00 4.01
2481 13040 5.190528 TCTTATTCTTGCTTCATGACCCTCT 59.809 40.000 0.00 0.00 0.00 3.69
2488 13047 7.816031 ACCAAAACATCTTATTCTTGCTTCATG 59.184 33.333 0.00 0.00 0.00 3.07
2591 13150 3.113043 AGTAGGGGCCTAAAACCACTAG 58.887 50.000 0.84 0.00 43.88 2.57
2592 13151 2.841881 CAGTAGGGGCCTAAAACCACTA 59.158 50.000 0.84 0.00 39.92 2.74
2593 13152 1.633945 CAGTAGGGGCCTAAAACCACT 59.366 52.381 0.84 0.00 45.21 4.00
2703 13262 3.625853 TGGAATTCTTGTGTCACAACCA 58.374 40.909 14.48 15.90 33.96 3.67
3058 13617 2.017049 GACGGATAAGCTTGCATTGGT 58.983 47.619 9.86 0.00 0.00 3.67
3133 13693 2.427453 TGCTCTAACGGATCTCCAACTC 59.573 50.000 0.00 0.00 35.14 3.01
3170 13730 2.536761 TTGACGGACCGAATTTGTCT 57.463 45.000 23.38 0.00 33.22 3.41
3185 13745 2.247267 CGTTCGTGGGCGTTTGAC 59.753 61.111 0.00 0.00 39.49 3.18
3250 13815 7.556275 TGGATTTGAGGTATGTTAATTGAGGTC 59.444 37.037 0.00 0.00 0.00 3.85
3278 13843 6.425417 TCGTTTACATAGTTGCATGAGTTTGA 59.575 34.615 0.00 0.00 0.00 2.69
3295 13860 5.863898 GATGTGTGTAATGCATCGTTTACA 58.136 37.500 0.00 2.78 36.30 2.41
3362 13928 4.282950 AGCATGCAGATTAAACATGTCG 57.717 40.909 21.98 0.00 42.50 4.35
3401 13967 2.022129 CAAGGACAGTCGTGGACGC 61.022 63.158 0.00 0.00 37.67 5.19
3403 13969 1.668151 GGCAAGGACAGTCGTGGAC 60.668 63.158 1.49 0.00 0.00 4.02
3431 13997 1.453155 GCGAGATGGACAACAATGGT 58.547 50.000 0.00 0.00 0.00 3.55
3434 14000 0.249120 TCCGCGAGATGGACAACAAT 59.751 50.000 8.23 0.00 0.00 2.71
3438 14004 1.134367 CTACTTCCGCGAGATGGACAA 59.866 52.381 8.23 0.00 34.56 3.18
3460 14026 3.261897 CCATCTGTACTGGGTCTTCAACT 59.738 47.826 0.00 0.00 0.00 3.16
3470 14036 1.043116 TCCGGCTCCATCTGTACTGG 61.043 60.000 0.00 0.00 34.93 4.00
3568 14138 2.303175 GACTGAGAGTAGAATCGGGCT 58.697 52.381 0.00 0.00 0.00 5.19
3579 14149 3.444805 GCGCCCTCGACTGAGAGT 61.445 66.667 0.00 0.00 45.57 3.24
3721 14428 1.419381 GGAAGGAGAGGATGAGGGTC 58.581 60.000 0.00 0.00 0.00 4.46
3761 14468 7.174253 CAGTCCACTAGAGTATGATTCCTACTC 59.826 44.444 16.86 16.86 43.52 2.59
3769 14476 5.130705 TCACCAGTCCACTAGAGTATGAT 57.869 43.478 0.00 0.00 0.00 2.45
3778 14485 2.335681 TTCCCATCACCAGTCCACTA 57.664 50.000 0.00 0.00 0.00 2.74
3781 14488 2.557229 CCATTTTCCCATCACCAGTCCA 60.557 50.000 0.00 0.00 0.00 4.02
3796 14503 3.369175 GGAGCCTTCCAATCTCCATTTT 58.631 45.455 2.88 0.00 44.38 1.82
3826 14533 0.740149 CCTGCGCTGGATAATTGCAA 59.260 50.000 27.72 0.00 34.78 4.08
3827 14534 0.107263 TCCTGCGCTGGATAATTGCA 60.107 50.000 29.82 7.44 0.00 4.08
3848 14555 2.800736 GCATCGGGCGCTTGAATT 59.199 55.556 7.64 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.