Multiple sequence alignment - TraesCS2B01G128000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G128000 chr2B 100.000 4154 0 0 1 4154 95861915 95857762 0.000000e+00 7672.0
1 TraesCS2B01G128000 chr2B 85.701 1084 131 19 879 1946 96050624 96049549 0.000000e+00 1122.0
2 TraesCS2B01G128000 chr2B 84.473 1082 135 20 879 1946 96017937 96016875 0.000000e+00 1037.0
3 TraesCS2B01G128000 chr2B 84.196 1082 138 20 879 1946 96000325 95999263 0.000000e+00 1020.0
4 TraesCS2B01G128000 chr2B 84.196 1082 138 20 879 1946 96013525 96012463 0.000000e+00 1020.0
5 TraesCS2B01G128000 chr2B 83.937 1077 142 19 879 1946 95942879 95941825 0.000000e+00 1002.0
6 TraesCS2B01G128000 chr2B 85.297 891 96 16 2285 3175 96049558 96048703 0.000000e+00 887.0
7 TraesCS2B01G128000 chr2B 85.073 891 96 20 2285 3175 95941834 95940981 0.000000e+00 874.0
8 TraesCS2B01G128000 chr2B 84.848 891 100 16 2285 3175 95949833 95948978 0.000000e+00 865.0
9 TraesCS2B01G128000 chr2B 84.814 889 101 15 2285 3173 95990966 95990112 0.000000e+00 863.0
10 TraesCS2B01G128000 chr2B 84.702 889 102 15 2285 3173 95999272 95998418 0.000000e+00 857.0
11 TraesCS2B01G128000 chr2B 84.719 890 101 16 2285 3174 96012472 96011618 0.000000e+00 857.0
12 TraesCS2B01G128000 chr2B 84.607 890 102 16 2285 3174 96016884 96016030 0.000000e+00 852.0
13 TraesCS2B01G128000 chr2B 84.175 891 106 15 2285 3175 96007635 96006780 0.000000e+00 832.0
14 TraesCS2B01G128000 chr2B 84.175 891 105 17 2285 3175 96024518 96023664 0.000000e+00 832.0
15 TraesCS2B01G128000 chr2B 85.542 747 96 10 1210 1946 96025253 96024509 0.000000e+00 771.0
16 TraesCS2B01G128000 chr2B 93.502 277 17 1 262 537 103194854 103194578 1.070000e-110 411.0
17 TraesCS2B01G128000 chr2B 95.122 41 2 0 2054 2094 773772148 773772108 9.640000e-07 65.8
18 TraesCS2B01G128000 chr2B 100.000 28 0 0 2664 2691 95859195 95859168 8.000000e-03 52.8
19 TraesCS2B01G128000 chr2B 100.000 28 0 0 2664 2691 96024117 96024090 8.000000e-03 52.8
20 TraesCS2B01G128000 chr2D 94.952 2813 108 8 529 3331 61234899 61232111 0.000000e+00 4377.0
21 TraesCS2B01G128000 chr2D 92.825 892 47 11 1713 2591 61229861 61228974 0.000000e+00 1277.0
22 TraesCS2B01G128000 chr2D 95.728 749 30 1 2583 3331 61228026 61227280 0.000000e+00 1205.0
23 TraesCS2B01G128000 chr2D 84.366 1081 140 18 879 1936 61243402 61242328 0.000000e+00 1033.0
24 TraesCS2B01G128000 chr2D 84.153 915 104 19 2285 3198 61303989 61303115 0.000000e+00 848.0
25 TraesCS2B01G128000 chr2D 87.543 586 63 8 1371 1947 61304563 61303979 0.000000e+00 669.0
26 TraesCS2B01G128000 chr2D 84.337 498 74 4 889 1382 61306953 61306456 6.240000e-133 484.0
27 TraesCS2B01G128000 chr2D 84.394 487 71 5 2689 3175 61241964 61241483 1.350000e-129 473.0
28 TraesCS2B01G128000 chr2D 90.141 213 20 1 2393 2605 61242275 61242064 4.090000e-70 276.0
29 TraesCS2B01G128000 chr2D 82.353 119 8 4 111 217 61235060 61234943 1.590000e-14 91.6
30 TraesCS2B01G128000 chr2D 96.875 32 1 0 2660 2691 61227892 61227861 2.000000e-03 54.7
31 TraesCS2B01G128000 chr2D 100.000 28 0 0 2721 2748 61232758 61232731 8.000000e-03 52.8
32 TraesCS2B01G128000 chr2D 100.000 28 0 0 2664 2691 61241933 61241906 8.000000e-03 52.8
33 TraesCS2B01G128000 chr2D 100.000 28 0 0 2664 2691 61303592 61303565 8.000000e-03 52.8
34 TraesCS2B01G128000 chr2A 94.723 1118 39 7 529 1643 61663717 61662617 0.000000e+00 1720.0
35 TraesCS2B01G128000 chr2A 85.075 1072 133 18 889 1947 61796673 61795616 0.000000e+00 1068.0
36 TraesCS2B01G128000 chr2A 88.571 490 54 2 2689 3177 61787015 61786527 9.940000e-166 593.0
37 TraesCS2B01G128000 chr2A 94.620 316 12 3 3016 3331 61657625 61657315 6.240000e-133 484.0
38 TraesCS2B01G128000 chr2A 94.403 268 15 0 262 529 723523298 723523031 2.990000e-111 412.0
39 TraesCS2B01G128000 chr2A 85.583 326 32 7 2285 2608 61795626 61795314 1.110000e-85 327.0
40 TraesCS2B01G128000 chr2A 95.652 161 7 0 2680 2840 61657793 61657633 4.120000e-65 259.0
41 TraesCS2B01G128000 chr2A 86.538 52 6 1 111 161 61663862 61663811 5.800000e-04 56.5
42 TraesCS2B01G128000 chr2A 100.000 28 0 0 2664 2691 61657752 61657725 8.000000e-03 52.8
43 TraesCS2B01G128000 chr2A 100.000 28 0 0 2664 2691 61786983 61786956 8.000000e-03 52.8
44 TraesCS2B01G128000 chr4B 95.808 811 30 2 3345 4154 450854477 450855284 0.000000e+00 1306.0
45 TraesCS2B01G128000 chr4B 86.111 144 19 1 1996 2139 384301449 384301307 2.000000e-33 154.0
46 TraesCS2B01G128000 chr4B 84.000 150 23 1 1996 2145 384301200 384301052 4.330000e-30 143.0
47 TraesCS2B01G128000 chr7D 95.561 811 35 1 3345 4154 530114109 530114919 0.000000e+00 1297.0
48 TraesCS2B01G128000 chr7D 94.821 811 41 1 3345 4154 75340287 75341097 0.000000e+00 1264.0
49 TraesCS2B01G128000 chr3D 94.451 811 43 2 3345 4154 608043717 608042908 0.000000e+00 1247.0
50 TraesCS2B01G128000 chr3D 84.000 150 18 6 2075 2222 239613009 239613154 5.600000e-29 139.0
51 TraesCS2B01G128000 chr5A 81.975 810 133 8 3345 4153 601479607 601478810 0.000000e+00 675.0
52 TraesCS2B01G128000 chr5A 93.796 274 17 0 262 535 510187833 510187560 2.990000e-111 412.0
53 TraesCS2B01G128000 chr5A 94.030 268 16 0 262 529 673688814 673688547 1.390000e-109 407.0
54 TraesCS2B01G128000 chr7B 94.776 268 13 1 262 529 193312379 193312645 2.310000e-112 416.0
55 TraesCS2B01G128000 chr7B 94.074 270 15 1 262 531 180047271 180047003 3.870000e-110 409.0
56 TraesCS2B01G128000 chr6B 94.403 268 15 0 262 529 87526016 87526283 2.990000e-111 412.0
57 TraesCS2B01G128000 chr3B 94.074 270 16 0 262 531 559536723 559536454 1.070000e-110 411.0
58 TraesCS2B01G128000 chr3B 94.074 270 16 0 262 531 575219713 575219444 1.070000e-110 411.0
59 TraesCS2B01G128000 chr3B 85.821 134 14 5 2075 2206 341227218 341227348 2.010000e-28 137.0
60 TraesCS2B01G128000 chr5D 83.575 207 24 6 1995 2201 138484579 138484383 7.090000e-43 185.0
61 TraesCS2B01G128000 chr5B 81.731 208 27 6 1995 2201 188018800 188018603 3.320000e-36 163.0
62 TraesCS2B01G128000 chr3A 84.106 151 16 8 2075 2222 340285414 340285559 5.600000e-29 139.0
63 TraesCS2B01G128000 chr4A 84.783 138 18 3 1996 2133 168781078 168781212 7.240000e-28 135.0
64 TraesCS2B01G128000 chr6A 92.982 57 4 0 44 100 10937633 10937577 2.660000e-12 84.2
65 TraesCS2B01G128000 chr6A 100.000 31 0 0 1 31 10937660 10937630 1.610000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G128000 chr2B 95857762 95861915 4153 True 3862.400000 7672 100.000000 1 4154 2 chr2B.!!$R5 4153
1 TraesCS2B01G128000 chr2B 96048703 96050624 1921 True 1004.500000 1122 85.499000 879 3175 2 chr2B.!!$R10 2296
2 TraesCS2B01G128000 chr2B 95998418 96000325 1907 True 938.500000 1020 84.449000 879 3173 2 chr2B.!!$R7 2294
3 TraesCS2B01G128000 chr2B 95940981 95942879 1898 True 938.000000 1002 84.505000 879 3175 2 chr2B.!!$R6 2296
4 TraesCS2B01G128000 chr2B 96006780 96017937 11157 True 919.600000 1037 84.434000 879 3175 5 chr2B.!!$R8 2296
5 TraesCS2B01G128000 chr2B 95948978 95949833 855 True 865.000000 865 84.848000 2285 3175 1 chr2B.!!$R1 890
6 TraesCS2B01G128000 chr2B 95990112 95990966 854 True 863.000000 863 84.814000 2285 3173 1 chr2B.!!$R2 888
7 TraesCS2B01G128000 chr2B 96023664 96025253 1589 True 551.933333 832 89.905667 1210 3175 3 chr2B.!!$R9 1965
8 TraesCS2B01G128000 chr2D 61227280 61235060 7780 True 1176.350000 4377 93.788833 111 3331 6 chr2D.!!$R1 3220
9 TraesCS2B01G128000 chr2D 61303115 61306953 3838 True 513.450000 848 89.008250 889 3198 4 chr2D.!!$R3 2309
10 TraesCS2B01G128000 chr2D 61241483 61243402 1919 True 458.700000 1033 89.725250 879 3175 4 chr2D.!!$R2 2296
11 TraesCS2B01G128000 chr2A 61662617 61663862 1245 True 888.250000 1720 90.630500 111 1643 2 chr2A.!!$R3 1532
12 TraesCS2B01G128000 chr2A 61795314 61796673 1359 True 697.500000 1068 85.329000 889 2608 2 chr2A.!!$R5 1719
13 TraesCS2B01G128000 chr4B 450854477 450855284 807 False 1306.000000 1306 95.808000 3345 4154 1 chr4B.!!$F1 809
14 TraesCS2B01G128000 chr7D 530114109 530114919 810 False 1297.000000 1297 95.561000 3345 4154 1 chr7D.!!$F2 809
15 TraesCS2B01G128000 chr7D 75340287 75341097 810 False 1264.000000 1264 94.821000 3345 4154 1 chr7D.!!$F1 809
16 TraesCS2B01G128000 chr3D 608042908 608043717 809 True 1247.000000 1247 94.451000 3345 4154 1 chr3D.!!$R1 809
17 TraesCS2B01G128000 chr5A 601478810 601479607 797 True 675.000000 675 81.975000 3345 4153 1 chr5A.!!$R2 808

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
528 630 0.031616 TTTGGAACCAAACAGGCCCT 60.032 50.0 14.02 0.0 43.14 5.19 F
998 1106 0.178944 TTGGGGAGAGTCGACCTTGA 60.179 55.0 13.01 0.0 0.00 3.02 F
1515 3543 0.753262 GTCTGGACCACTGTGACACT 59.247 55.0 9.86 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2218 4283 0.038310 CAACCTTGAGTTCCCCCTCC 59.962 60.0 0.0 0.0 36.18 4.30 R
2785 14142 0.972883 GGTTCCACTCTCTGAGCACT 59.027 55.0 0.0 0.0 32.04 4.40 R
3342 19514 0.036010 CCACCTTGTGCTCGATCCTT 60.036 55.0 0.0 0.0 31.34 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.821991 AGTAACCTGACACTGCAGAC 57.178 50.000 23.35 11.72 38.14 3.51
20 21 1.344763 AGTAACCTGACACTGCAGACC 59.655 52.381 23.35 9.19 38.14 3.85
21 22 1.070134 GTAACCTGACACTGCAGACCA 59.930 52.381 23.35 13.36 38.14 4.02
22 23 0.179045 AACCTGACACTGCAGACCAC 60.179 55.000 23.35 9.18 38.14 4.16
23 24 1.302033 CCTGACACTGCAGACCACC 60.302 63.158 23.35 5.12 38.14 4.61
24 25 1.665916 CTGACACTGCAGACCACCG 60.666 63.158 23.35 3.69 38.14 4.94
25 26 3.044305 GACACTGCAGACCACCGC 61.044 66.667 23.35 0.00 0.00 5.68
26 27 3.807631 GACACTGCAGACCACCGCA 62.808 63.158 23.35 0.00 36.52 5.69
27 28 3.349006 CACTGCAGACCACCGCAC 61.349 66.667 23.35 0.00 33.75 5.34
28 29 4.969196 ACTGCAGACCACCGCACG 62.969 66.667 23.35 0.00 33.75 5.34
29 30 4.662961 CTGCAGACCACCGCACGA 62.663 66.667 8.42 0.00 33.75 4.35
30 31 4.228567 TGCAGACCACCGCACGAA 62.229 61.111 0.00 0.00 31.95 3.85
31 32 2.742372 GCAGACCACCGCACGAAT 60.742 61.111 0.00 0.00 0.00 3.34
32 33 2.740714 GCAGACCACCGCACGAATC 61.741 63.158 0.00 0.00 0.00 2.52
33 34 1.079819 CAGACCACCGCACGAATCT 60.080 57.895 0.00 0.00 0.00 2.40
34 35 0.670546 CAGACCACCGCACGAATCTT 60.671 55.000 0.00 0.00 0.00 2.40
35 36 0.670546 AGACCACCGCACGAATCTTG 60.671 55.000 0.00 0.00 0.00 3.02
36 37 0.669318 GACCACCGCACGAATCTTGA 60.669 55.000 0.00 0.00 0.00 3.02
37 38 0.250124 ACCACCGCACGAATCTTGAA 60.250 50.000 0.00 0.00 0.00 2.69
38 39 0.871722 CCACCGCACGAATCTTGAAA 59.128 50.000 0.00 0.00 0.00 2.69
39 40 1.135972 CCACCGCACGAATCTTGAAAG 60.136 52.381 0.00 0.00 0.00 2.62
40 41 1.135972 CACCGCACGAATCTTGAAAGG 60.136 52.381 0.00 0.00 0.00 3.11
41 42 0.447801 CCGCACGAATCTTGAAAGGG 59.552 55.000 0.00 0.00 0.00 3.95
42 43 0.179189 CGCACGAATCTTGAAAGGGC 60.179 55.000 0.00 0.00 0.00 5.19
43 44 0.171231 GCACGAATCTTGAAAGGGCC 59.829 55.000 0.00 0.00 0.00 5.80
44 45 0.447801 CACGAATCTTGAAAGGGCCG 59.552 55.000 0.00 0.00 0.00 6.13
45 46 0.323629 ACGAATCTTGAAAGGGCCGA 59.676 50.000 0.00 0.00 0.00 5.54
46 47 1.271163 ACGAATCTTGAAAGGGCCGAA 60.271 47.619 0.00 0.00 0.00 4.30
47 48 1.130561 CGAATCTTGAAAGGGCCGAAC 59.869 52.381 0.00 0.00 0.00 3.95
48 49 1.130561 GAATCTTGAAAGGGCCGAACG 59.869 52.381 0.00 0.00 0.00 3.95
49 50 0.676782 ATCTTGAAAGGGCCGAACGG 60.677 55.000 9.00 9.00 38.57 4.44
50 51 1.302192 CTTGAAAGGGCCGAACGGA 60.302 57.895 17.63 0.00 37.50 4.69
51 52 1.574702 CTTGAAAGGGCCGAACGGAC 61.575 60.000 17.63 14.41 44.33 4.79
52 53 2.047213 TTGAAAGGGCCGAACGGACT 62.047 55.000 18.61 11.38 44.51 3.85
53 54 1.186917 TGAAAGGGCCGAACGGACTA 61.187 55.000 18.61 0.00 44.51 2.59
54 55 0.459759 GAAAGGGCCGAACGGACTAG 60.460 60.000 18.61 0.00 44.51 2.57
55 56 0.901580 AAAGGGCCGAACGGACTAGA 60.902 55.000 18.61 0.00 44.51 2.43
56 57 0.686769 AAGGGCCGAACGGACTAGAT 60.687 55.000 18.61 0.39 44.51 1.98
57 58 0.184451 AGGGCCGAACGGACTAGATA 59.816 55.000 18.61 0.00 44.51 1.98
58 59 1.035139 GGGCCGAACGGACTAGATAA 58.965 55.000 18.61 0.00 44.51 1.75
59 60 1.000496 GGGCCGAACGGACTAGATAAG 60.000 57.143 18.61 0.00 44.51 1.73
60 61 1.602416 GGCCGAACGGACTAGATAAGC 60.602 57.143 17.63 0.00 41.04 3.09
61 62 1.925068 GCCGAACGGACTAGATAAGCG 60.925 57.143 17.63 0.00 37.50 4.68
62 63 1.334779 CCGAACGGACTAGATAAGCGG 60.335 57.143 7.53 0.00 37.50 5.52
63 64 1.334779 CGAACGGACTAGATAAGCGGG 60.335 57.143 0.00 0.00 0.00 6.13
64 65 1.952296 GAACGGACTAGATAAGCGGGA 59.048 52.381 0.00 0.00 0.00 5.14
65 66 1.606903 ACGGACTAGATAAGCGGGAG 58.393 55.000 0.00 0.00 0.00 4.30
66 67 1.133853 ACGGACTAGATAAGCGGGAGT 60.134 52.381 0.00 0.00 0.00 3.85
67 68 1.536331 CGGACTAGATAAGCGGGAGTC 59.464 57.143 0.00 0.00 36.60 3.36
68 69 1.536331 GGACTAGATAAGCGGGAGTCG 59.464 57.143 0.00 0.00 37.91 4.18
69 70 1.536331 GACTAGATAAGCGGGAGTCGG 59.464 57.143 0.00 0.00 39.69 4.79
70 71 0.882474 CTAGATAAGCGGGAGTCGGG 59.118 60.000 0.00 0.00 39.69 5.14
71 72 0.538977 TAGATAAGCGGGAGTCGGGG 60.539 60.000 0.00 0.00 39.69 5.73
72 73 3.516866 GATAAGCGGGAGTCGGGGC 62.517 68.421 0.00 0.00 39.69 5.80
73 74 4.772231 TAAGCGGGAGTCGGGGCT 62.772 66.667 0.00 0.00 39.69 5.19
97 98 3.431055 TGCTGTGGCACCTTTTCG 58.569 55.556 16.26 0.00 44.28 3.46
98 99 2.050077 GCTGTGGCACCTTTTCGC 60.050 61.111 16.26 4.42 38.54 4.70
99 100 2.844451 GCTGTGGCACCTTTTCGCA 61.844 57.895 16.26 0.00 38.54 5.10
100 101 1.283793 CTGTGGCACCTTTTCGCAG 59.716 57.895 16.26 0.00 33.59 5.18
101 102 2.050077 GTGGCACCTTTTCGCAGC 60.050 61.111 6.29 0.00 0.00 5.25
102 103 2.518112 TGGCACCTTTTCGCAGCA 60.518 55.556 0.00 0.00 0.00 4.41
103 104 1.902918 TGGCACCTTTTCGCAGCAT 60.903 52.632 0.00 0.00 0.00 3.79
104 105 0.607762 TGGCACCTTTTCGCAGCATA 60.608 50.000 0.00 0.00 0.00 3.14
105 106 0.525761 GGCACCTTTTCGCAGCATAA 59.474 50.000 0.00 0.00 0.00 1.90
106 107 1.067915 GGCACCTTTTCGCAGCATAAA 60.068 47.619 0.00 0.00 0.00 1.40
107 108 2.417243 GGCACCTTTTCGCAGCATAAAT 60.417 45.455 0.00 0.00 0.00 1.40
108 109 2.854185 GCACCTTTTCGCAGCATAAATC 59.146 45.455 0.00 0.00 0.00 2.17
109 110 3.673052 GCACCTTTTCGCAGCATAAATCA 60.673 43.478 0.00 0.00 0.00 2.57
142 143 3.512680 ACGATTCGGTTTCATCTCAGAC 58.487 45.455 11.29 0.00 0.00 3.51
146 147 4.600692 TTCGGTTTCATCTCAGACAGAA 57.399 40.909 0.00 0.00 33.62 3.02
162 243 2.498078 ACAGAAAGAGAAGTCGGGGATC 59.502 50.000 0.00 0.00 0.00 3.36
165 246 2.255770 AAGAGAAGTCGGGGATCCTT 57.744 50.000 12.58 0.00 0.00 3.36
171 252 1.657804 AGTCGGGGATCCTTGACTTT 58.342 50.000 24.76 11.31 36.41 2.66
192 273 4.963318 TTGTCTCCTCTTGTGTCTGAAT 57.037 40.909 0.00 0.00 0.00 2.57
195 276 6.419484 TGTCTCCTCTTGTGTCTGAATAAA 57.581 37.500 0.00 0.00 0.00 1.40
196 277 7.009179 TGTCTCCTCTTGTGTCTGAATAAAT 57.991 36.000 0.00 0.00 0.00 1.40
197 278 8.134202 TGTCTCCTCTTGTGTCTGAATAAATA 57.866 34.615 0.00 0.00 0.00 1.40
198 279 8.035394 TGTCTCCTCTTGTGTCTGAATAAATAC 58.965 37.037 0.00 0.00 0.00 1.89
199 280 8.035394 GTCTCCTCTTGTGTCTGAATAAATACA 58.965 37.037 0.00 0.00 0.00 2.29
216 318 0.736053 ACAAACGAGCGCTTTGGAAA 59.264 45.000 21.00 0.00 33.61 3.13
230 332 4.326826 CTTTGGAAAGCATACTGGACTCA 58.673 43.478 0.00 0.00 0.00 3.41
241 343 3.094484 ACTGGACTCAGAGGAGGTTAG 57.906 52.381 1.53 0.00 45.81 2.34
242 344 2.291930 ACTGGACTCAGAGGAGGTTAGG 60.292 54.545 1.53 0.00 45.81 2.69
243 345 1.007238 TGGACTCAGAGGAGGTTAGGG 59.993 57.143 1.53 0.00 45.81 3.53
244 346 1.116308 GACTCAGAGGAGGTTAGGGC 58.884 60.000 1.53 0.00 45.81 5.19
245 347 0.413832 ACTCAGAGGAGGTTAGGGCA 59.586 55.000 1.53 0.00 45.81 5.36
246 348 1.008938 ACTCAGAGGAGGTTAGGGCAT 59.991 52.381 1.53 0.00 45.81 4.40
247 349 1.415659 CTCAGAGGAGGTTAGGGCATG 59.584 57.143 0.00 0.00 37.51 4.06
248 350 1.207791 CAGAGGAGGTTAGGGCATGT 58.792 55.000 0.00 0.00 0.00 3.21
249 351 1.561542 CAGAGGAGGTTAGGGCATGTT 59.438 52.381 0.00 0.00 0.00 2.71
250 352 2.025887 CAGAGGAGGTTAGGGCATGTTT 60.026 50.000 0.00 0.00 0.00 2.83
251 353 2.025887 AGAGGAGGTTAGGGCATGTTTG 60.026 50.000 0.00 0.00 0.00 2.93
252 354 1.005924 AGGAGGTTAGGGCATGTTTGG 59.994 52.381 0.00 0.00 0.00 3.28
253 355 1.272480 GGAGGTTAGGGCATGTTTGGT 60.272 52.381 0.00 0.00 0.00 3.67
254 356 2.525368 GAGGTTAGGGCATGTTTGGTT 58.475 47.619 0.00 0.00 0.00 3.67
255 357 2.492088 GAGGTTAGGGCATGTTTGGTTC 59.508 50.000 0.00 0.00 0.00 3.62
256 358 1.548719 GGTTAGGGCATGTTTGGTTCC 59.451 52.381 0.00 0.00 0.00 3.62
257 359 2.243810 GTTAGGGCATGTTTGGTTCCA 58.756 47.619 0.00 0.00 0.00 3.53
258 360 2.630580 GTTAGGGCATGTTTGGTTCCAA 59.369 45.455 0.00 0.00 0.00 3.53
259 361 2.028561 AGGGCATGTTTGGTTCCAAT 57.971 45.000 5.06 0.00 0.00 3.16
260 362 3.182887 AGGGCATGTTTGGTTCCAATA 57.817 42.857 5.06 0.00 0.00 1.90
261 363 3.099141 AGGGCATGTTTGGTTCCAATAG 58.901 45.455 5.06 0.00 0.00 1.73
262 364 3.096092 GGGCATGTTTGGTTCCAATAGA 58.904 45.455 5.06 0.00 0.00 1.98
263 365 3.119137 GGGCATGTTTGGTTCCAATAGAC 60.119 47.826 5.06 2.05 0.00 2.59
264 366 3.763897 GGCATGTTTGGTTCCAATAGACT 59.236 43.478 5.06 0.00 0.00 3.24
265 367 4.220602 GGCATGTTTGGTTCCAATAGACTT 59.779 41.667 5.06 0.00 0.00 3.01
266 368 5.417580 GGCATGTTTGGTTCCAATAGACTTA 59.582 40.000 5.06 0.00 0.00 2.24
267 369 6.071616 GGCATGTTTGGTTCCAATAGACTTAA 60.072 38.462 5.06 0.00 0.00 1.85
268 370 7.375053 GCATGTTTGGTTCCAATAGACTTAAA 58.625 34.615 5.06 0.00 0.00 1.52
269 371 7.870445 GCATGTTTGGTTCCAATAGACTTAAAA 59.130 33.333 5.06 0.00 0.00 1.52
270 372 9.191995 CATGTTTGGTTCCAATAGACTTAAAAC 57.808 33.333 5.06 0.00 0.00 2.43
271 373 8.528044 TGTTTGGTTCCAATAGACTTAAAACT 57.472 30.769 5.06 0.00 0.00 2.66
272 374 9.629878 TGTTTGGTTCCAATAGACTTAAAACTA 57.370 29.630 5.06 0.00 0.00 2.24
274 376 9.856162 TTTGGTTCCAATAGACTTAAAACTAGT 57.144 29.630 5.06 0.00 0.00 2.57
275 377 8.842358 TGGTTCCAATAGACTTAAAACTAGTG 57.158 34.615 0.00 8.23 35.42 2.74
276 378 8.653191 TGGTTCCAATAGACTTAAAACTAGTGA 58.347 33.333 13.73 0.00 37.01 3.41
277 379 8.933807 GGTTCCAATAGACTTAAAACTAGTGAC 58.066 37.037 13.73 7.75 37.01 3.67
278 380 9.708092 GTTCCAATAGACTTAAAACTAGTGACT 57.292 33.333 13.73 0.00 37.01 3.41
299 401 5.937111 ACTTATAAGTCACACCTGTTTGGT 58.063 37.500 12.50 0.00 42.45 3.67
300 402 6.362248 ACTTATAAGTCACACCTGTTTGGTT 58.638 36.000 12.50 0.00 40.53 3.67
301 403 6.262273 ACTTATAAGTCACACCTGTTTGGTTG 59.738 38.462 12.50 0.00 40.53 3.77
302 404 8.069808 ACTTATAAGTCACACCTGTTTGGTTGT 61.070 37.037 12.50 0.00 40.53 3.32
320 422 5.790593 GGTTGTCACCAGACTTATAAGTCA 58.209 41.667 35.55 19.35 46.91 3.41
321 423 6.407202 GGTTGTCACCAGACTTATAAGTCAT 58.593 40.000 35.55 22.91 46.91 3.06
322 424 6.535508 GGTTGTCACCAGACTTATAAGTCATC 59.464 42.308 35.55 22.12 46.91 2.92
323 425 7.579723 GGTTGTCACCAGACTTATAAGTCATCT 60.580 40.741 35.55 19.97 46.91 2.90
336 438 2.100605 GTCATCTGACACACCTTCCC 57.899 55.000 5.46 0.00 44.18 3.97
337 439 1.347707 GTCATCTGACACACCTTCCCA 59.652 52.381 5.46 0.00 44.18 4.37
338 440 1.347707 TCATCTGACACACCTTCCCAC 59.652 52.381 0.00 0.00 0.00 4.61
339 441 1.072173 CATCTGACACACCTTCCCACA 59.928 52.381 0.00 0.00 0.00 4.17
340 442 0.468226 TCTGACACACCTTCCCACAC 59.532 55.000 0.00 0.00 0.00 3.82
341 443 0.535102 CTGACACACCTTCCCACACC 60.535 60.000 0.00 0.00 0.00 4.16
342 444 1.275421 TGACACACCTTCCCACACCA 61.275 55.000 0.00 0.00 0.00 4.17
343 445 0.106918 GACACACCTTCCCACACCAA 60.107 55.000 0.00 0.00 0.00 3.67
344 446 0.555769 ACACACCTTCCCACACCAAT 59.444 50.000 0.00 0.00 0.00 3.16
345 447 1.247567 CACACCTTCCCACACCAATC 58.752 55.000 0.00 0.00 0.00 2.67
346 448 0.112412 ACACCTTCCCACACCAATCC 59.888 55.000 0.00 0.00 0.00 3.01
347 449 0.112218 CACCTTCCCACACCAATCCA 59.888 55.000 0.00 0.00 0.00 3.41
348 450 1.084018 ACCTTCCCACACCAATCCAT 58.916 50.000 0.00 0.00 0.00 3.41
349 451 2.025416 CACCTTCCCACACCAATCCATA 60.025 50.000 0.00 0.00 0.00 2.74
350 452 2.858768 ACCTTCCCACACCAATCCATAT 59.141 45.455 0.00 0.00 0.00 1.78
351 453 3.117512 ACCTTCCCACACCAATCCATATC 60.118 47.826 0.00 0.00 0.00 1.63
352 454 3.117550 CCTTCCCACACCAATCCATATCA 60.118 47.826 0.00 0.00 0.00 2.15
353 455 4.448200 CCTTCCCACACCAATCCATATCAT 60.448 45.833 0.00 0.00 0.00 2.45
354 456 4.103013 TCCCACACCAATCCATATCATG 57.897 45.455 0.00 0.00 0.00 3.07
355 457 2.559668 CCCACACCAATCCATATCATGC 59.440 50.000 0.00 0.00 0.00 4.06
356 458 3.224269 CCACACCAATCCATATCATGCA 58.776 45.455 0.00 0.00 0.00 3.96
357 459 3.830178 CCACACCAATCCATATCATGCAT 59.170 43.478 0.00 0.00 0.00 3.96
358 460 4.321675 CCACACCAATCCATATCATGCATG 60.322 45.833 21.07 21.07 0.00 4.06
359 461 4.279922 CACACCAATCCATATCATGCATGT 59.720 41.667 25.43 15.34 0.00 3.21
360 462 4.279922 ACACCAATCCATATCATGCATGTG 59.720 41.667 25.43 16.44 0.00 3.21
361 463 4.521256 CACCAATCCATATCATGCATGTGA 59.479 41.667 25.43 15.11 0.00 3.58
362 464 5.185056 CACCAATCCATATCATGCATGTGAT 59.815 40.000 25.43 16.37 41.49 3.06
363 465 5.185056 ACCAATCCATATCATGCATGTGATG 59.815 40.000 25.43 24.94 39.13 3.07
364 466 5.394115 CCAATCCATATCATGCATGTGATGG 60.394 44.000 33.83 33.83 39.13 3.51
365 467 3.692690 TCCATATCATGCATGTGATGGG 58.307 45.455 35.87 26.99 39.13 4.00
366 468 3.331294 TCCATATCATGCATGTGATGGGA 59.669 43.478 35.87 28.16 39.24 4.37
367 469 3.442625 CCATATCATGCATGTGATGGGAC 59.557 47.826 32.94 0.00 39.13 4.46
368 470 1.991121 ATCATGCATGTGATGGGACC 58.009 50.000 25.43 0.00 37.44 4.46
369 471 0.106569 TCATGCATGTGATGGGACCC 60.107 55.000 25.43 2.45 0.00 4.46
370 472 0.396001 CATGCATGTGATGGGACCCA 60.396 55.000 17.73 17.73 38.19 4.51
371 473 0.396139 ATGCATGTGATGGGACCCAC 60.396 55.000 17.78 10.73 35.80 4.61
372 474 2.114670 GCATGTGATGGGACCCACG 61.115 63.158 17.78 1.36 35.80 4.94
373 475 2.114670 CATGTGATGGGACCCACGC 61.115 63.158 17.78 16.44 35.80 5.34
374 476 2.601702 ATGTGATGGGACCCACGCA 61.602 57.895 17.78 21.30 45.06 5.24
375 477 2.033448 GTGATGGGACCCACGCAA 59.967 61.111 17.78 0.00 44.22 4.85
376 478 1.602323 GTGATGGGACCCACGCAAA 60.602 57.895 17.78 0.00 44.22 3.68
377 479 1.151679 TGATGGGACCCACGCAAAA 59.848 52.632 17.78 0.00 44.22 2.44
378 480 0.893270 TGATGGGACCCACGCAAAAG 60.893 55.000 17.78 0.00 44.22 2.27
379 481 0.608035 GATGGGACCCACGCAAAAGA 60.608 55.000 17.78 0.00 44.22 2.52
380 482 0.609131 ATGGGACCCACGCAAAAGAG 60.609 55.000 17.78 0.00 44.22 2.85
381 483 1.971695 GGGACCCACGCAAAAGAGG 60.972 63.158 5.33 0.00 0.00 3.69
382 484 1.072505 GGACCCACGCAAAAGAGGA 59.927 57.895 0.00 0.00 0.00 3.71
383 485 0.322546 GGACCCACGCAAAAGAGGAT 60.323 55.000 0.00 0.00 0.00 3.24
384 486 0.804989 GACCCACGCAAAAGAGGATG 59.195 55.000 0.00 0.00 0.00 3.51
385 487 0.400213 ACCCACGCAAAAGAGGATGA 59.600 50.000 0.00 0.00 0.00 2.92
386 488 0.804989 CCCACGCAAAAGAGGATGAC 59.195 55.000 0.00 0.00 0.00 3.06
387 489 1.611673 CCCACGCAAAAGAGGATGACT 60.612 52.381 0.00 0.00 0.00 3.41
388 490 2.154462 CCACGCAAAAGAGGATGACTT 58.846 47.619 0.00 0.00 0.00 3.01
389 491 3.334691 CCACGCAAAAGAGGATGACTTA 58.665 45.455 0.00 0.00 0.00 2.24
390 492 3.941483 CCACGCAAAAGAGGATGACTTAT 59.059 43.478 0.00 0.00 0.00 1.73
391 493 5.116180 CCACGCAAAAGAGGATGACTTATA 58.884 41.667 0.00 0.00 0.00 0.98
392 494 5.584649 CCACGCAAAAGAGGATGACTTATAA 59.415 40.000 0.00 0.00 0.00 0.98
393 495 6.093495 CCACGCAAAAGAGGATGACTTATAAA 59.907 38.462 0.00 0.00 0.00 1.40
394 496 7.201732 CCACGCAAAAGAGGATGACTTATAAAT 60.202 37.037 0.00 0.00 0.00 1.40
395 497 8.184192 CACGCAAAAGAGGATGACTTATAAATT 58.816 33.333 0.00 0.00 0.00 1.82
396 498 8.739972 ACGCAAAAGAGGATGACTTATAAATTT 58.260 29.630 0.00 0.00 0.00 1.82
397 499 9.573133 CGCAAAAGAGGATGACTTATAAATTTT 57.427 29.630 0.00 0.00 0.00 1.82
409 511 8.808092 TGACTTATAAATTTTAAGTTGGGGTGG 58.192 33.333 18.46 1.33 39.40 4.61
410 512 8.959676 ACTTATAAATTTTAAGTTGGGGTGGA 57.040 30.769 14.66 0.00 36.70 4.02
411 513 9.031537 ACTTATAAATTTTAAGTTGGGGTGGAG 57.968 33.333 14.66 0.00 36.70 3.86
412 514 4.617253 AAATTTTAAGTTGGGGTGGAGC 57.383 40.909 0.00 0.00 0.00 4.70
413 515 2.757894 TTTTAAGTTGGGGTGGAGCA 57.242 45.000 0.00 0.00 0.00 4.26
414 516 2.757894 TTTAAGTTGGGGTGGAGCAA 57.242 45.000 0.00 0.00 0.00 3.91
415 517 1.989706 TTAAGTTGGGGTGGAGCAAC 58.010 50.000 0.00 0.00 0.00 4.17
416 518 1.145571 TAAGTTGGGGTGGAGCAACT 58.854 50.000 0.00 0.00 39.27 3.16
417 519 0.261696 AAGTTGGGGTGGAGCAACTT 59.738 50.000 0.00 0.00 41.36 2.66
418 520 1.145571 AGTTGGGGTGGAGCAACTTA 58.854 50.000 0.00 0.00 34.63 2.24
419 521 1.710809 AGTTGGGGTGGAGCAACTTAT 59.289 47.619 0.00 0.00 34.63 1.73
420 522 1.818674 GTTGGGGTGGAGCAACTTATG 59.181 52.381 0.00 0.00 0.00 1.90
421 523 1.367346 TGGGGTGGAGCAACTTATGA 58.633 50.000 0.00 0.00 0.00 2.15
422 524 1.004277 TGGGGTGGAGCAACTTATGAC 59.996 52.381 0.00 0.00 0.00 3.06
423 525 1.282157 GGGGTGGAGCAACTTATGACT 59.718 52.381 0.00 0.00 0.00 3.41
424 526 2.290960 GGGGTGGAGCAACTTATGACTT 60.291 50.000 0.00 0.00 0.00 3.01
425 527 3.054655 GGGGTGGAGCAACTTATGACTTA 60.055 47.826 0.00 0.00 0.00 2.24
426 528 4.385310 GGGGTGGAGCAACTTATGACTTAT 60.385 45.833 0.00 0.00 0.00 1.73
427 529 5.163237 GGGGTGGAGCAACTTATGACTTATA 60.163 44.000 0.00 0.00 0.00 0.98
428 530 6.354130 GGGTGGAGCAACTTATGACTTATAA 58.646 40.000 0.00 0.00 0.00 0.98
439 541 7.787725 CTTATGACTTATAAGTTGGGGTGAC 57.212 40.000 18.96 4.87 42.11 3.67
440 542 7.504926 TTATGACTTATAAGTTGGGGTGACT 57.495 36.000 18.96 0.00 39.88 3.41
441 543 5.836024 TGACTTATAAGTTGGGGTGACTT 57.164 39.130 18.96 0.00 39.88 3.01
442 544 6.938698 TGACTTATAAGTTGGGGTGACTTA 57.061 37.500 18.96 0.00 42.07 2.24
443 545 7.504926 TGACTTATAAGTTGGGGTGACTTAT 57.495 36.000 18.96 12.48 46.52 1.73
444 546 8.612486 TGACTTATAAGTTGGGGTGACTTATA 57.388 34.615 18.96 10.90 44.36 0.98
460 562 4.828829 ACTTATAAGTCGGGTCTGTTTGG 58.171 43.478 12.50 0.00 32.86 3.28
461 563 2.109425 ATAAGTCGGGTCTGTTTGGC 57.891 50.000 0.00 0.00 0.00 4.52
462 564 0.759959 TAAGTCGGGTCTGTTTGGCA 59.240 50.000 0.00 0.00 0.00 4.92
463 565 0.106918 AAGTCGGGTCTGTTTGGCAA 60.107 50.000 0.00 0.00 0.00 4.52
464 566 0.106918 AGTCGGGTCTGTTTGGCAAA 60.107 50.000 8.93 8.93 0.00 3.68
465 567 0.741915 GTCGGGTCTGTTTGGCAAAA 59.258 50.000 15.29 4.59 0.00 2.44
466 568 1.339929 GTCGGGTCTGTTTGGCAAAAT 59.660 47.619 15.29 0.00 0.00 1.82
467 569 2.554893 GTCGGGTCTGTTTGGCAAAATA 59.445 45.455 15.29 6.13 0.00 1.40
468 570 3.004944 GTCGGGTCTGTTTGGCAAAATAA 59.995 43.478 15.29 2.73 0.00 1.40
469 571 3.254657 TCGGGTCTGTTTGGCAAAATAAG 59.745 43.478 15.29 12.47 0.00 1.73
470 572 3.005367 CGGGTCTGTTTGGCAAAATAAGT 59.995 43.478 15.29 0.00 0.00 2.24
471 573 4.556233 GGGTCTGTTTGGCAAAATAAGTC 58.444 43.478 15.29 10.05 0.00 3.01
472 574 4.038642 GGGTCTGTTTGGCAAAATAAGTCA 59.961 41.667 15.29 6.39 0.00 3.41
473 575 5.279456 GGGTCTGTTTGGCAAAATAAGTCAT 60.279 40.000 15.29 0.00 0.00 3.06
474 576 6.223120 GGTCTGTTTGGCAAAATAAGTCATT 58.777 36.000 15.29 0.00 0.00 2.57
475 577 6.705825 GGTCTGTTTGGCAAAATAAGTCATTT 59.294 34.615 15.29 0.00 38.54 2.32
476 578 7.226523 GGTCTGTTTGGCAAAATAAGTCATTTT 59.773 33.333 15.29 0.00 45.72 1.82
477 579 8.611757 GTCTGTTTGGCAAAATAAGTCATTTTT 58.388 29.630 15.29 0.00 42.93 1.94
504 606 9.878667 TTCACTTTTCGATATATAAGTTGGTGA 57.121 29.630 0.00 0.00 0.00 4.02
505 607 9.309516 TCACTTTTCGATATATAAGTTGGTGAC 57.690 33.333 0.00 0.00 0.00 3.67
506 608 9.314321 CACTTTTCGATATATAAGTTGGTGACT 57.686 33.333 0.00 0.00 41.47 3.41
517 619 5.784578 AAGTTGGTGACTTATTTGGAACC 57.215 39.130 0.00 0.00 46.61 3.62
518 620 4.798882 AGTTGGTGACTTATTTGGAACCA 58.201 39.130 0.00 0.00 33.92 3.67
519 621 5.205056 AGTTGGTGACTTATTTGGAACCAA 58.795 37.500 1.83 1.83 43.50 3.67
520 622 5.659079 AGTTGGTGACTTATTTGGAACCAAA 59.341 36.000 19.15 19.15 46.21 3.28
521 623 5.523438 TGGTGACTTATTTGGAACCAAAC 57.477 39.130 19.23 8.57 46.80 2.93
522 624 4.956700 TGGTGACTTATTTGGAACCAAACA 59.043 37.500 19.23 7.15 46.80 2.83
523 625 5.068460 TGGTGACTTATTTGGAACCAAACAG 59.932 40.000 19.23 18.64 46.80 3.16
524 626 5.508994 GGTGACTTATTTGGAACCAAACAGG 60.509 44.000 19.23 12.17 46.80 4.00
525 627 4.038642 TGACTTATTTGGAACCAAACAGGC 59.961 41.667 19.23 18.98 46.80 4.85
526 628 3.323691 ACTTATTTGGAACCAAACAGGCC 59.676 43.478 19.23 0.00 46.80 5.19
527 629 1.055849 ATTTGGAACCAAACAGGCCC 58.944 50.000 19.23 0.00 46.80 5.80
528 630 0.031616 TTTGGAACCAAACAGGCCCT 60.032 50.000 14.02 0.00 43.14 5.19
529 631 0.031616 TTGGAACCAAACAGGCCCTT 60.032 50.000 0.00 0.00 43.14 3.95
530 632 0.854218 TGGAACCAAACAGGCCCTTA 59.146 50.000 0.00 0.00 43.14 2.69
549 651 7.393515 GGCCCTTATTATTCGGTTTCATCTAAT 59.606 37.037 0.00 0.00 0.00 1.73
550 652 8.237267 GCCCTTATTATTCGGTTTCATCTAATG 58.763 37.037 0.00 0.00 0.00 1.90
556 658 8.801882 TTATTCGGTTTCATCTAATGGAAGTT 57.198 30.769 0.00 0.00 0.00 2.66
558 660 5.800296 TCGGTTTCATCTAATGGAAGTTGA 58.200 37.500 0.00 0.00 0.00 3.18
560 662 6.712998 TCGGTTTCATCTAATGGAAGTTGAAA 59.287 34.615 6.17 6.17 40.39 2.69
603 705 1.152383 GGACCGGTTTAGAGCATCGC 61.152 60.000 9.42 0.00 42.67 4.58
608 710 0.861837 GGTTTAGAGCATCGCCATCG 59.138 55.000 0.00 0.00 42.67 3.84
635 737 8.160765 TCTCGTCCTCTCTGAATAAATAGAGAT 58.839 37.037 4.60 0.00 45.93 2.75
648 750 3.517296 ATAGAGATCAGAGCTCCCGAA 57.483 47.619 12.25 0.00 32.82 4.30
708 810 4.905456 TCGGAGGTTATTATCCATGGAGTT 59.095 41.667 21.33 6.86 35.14 3.01
760 864 1.299773 GCTAGCTGCTCTGCCTACG 60.300 63.158 4.91 0.00 38.95 3.51
765 869 1.591703 CTGCTCTGCCTACGGTTCA 59.408 57.895 0.00 0.00 0.00 3.18
776 880 5.326900 TGCCTACGGTTCATATGTCCTATA 58.673 41.667 1.90 2.66 0.00 1.31
833 938 4.157656 ACAAAAGTGCAGTGTTCTTGCTAA 59.842 37.500 0.00 0.00 0.00 3.09
998 1106 0.178944 TTGGGGAGAGTCGACCTTGA 60.179 55.000 13.01 0.00 0.00 3.02
1021 1129 2.744768 GCAGCAAGGACTAGCGTGC 61.745 63.158 1.11 1.11 35.48 5.34
1080 1188 7.009179 TCCTGATCTCAAACTTAATGTCACT 57.991 36.000 0.00 0.00 0.00 3.41
1273 1384 1.836802 TAGCAATGCCATTGACTGCA 58.163 45.000 21.24 0.00 42.83 4.41
1297 1408 7.576477 GCAAGATGCTAAAAGATTTGGAACTCT 60.576 37.037 0.00 0.00 40.96 3.24
1464 3479 1.067060 CGCGACATGAATCACCTCCTA 59.933 52.381 0.00 0.00 0.00 2.94
1515 3543 0.753262 GTCTGGACCACTGTGACACT 59.247 55.000 9.86 0.00 0.00 3.55
1516 3544 1.961394 GTCTGGACCACTGTGACACTA 59.039 52.381 9.86 0.00 0.00 2.74
1703 3734 2.901192 TCCCGTCACTCAAGGAATTGTA 59.099 45.455 0.00 0.00 0.00 2.41
1704 3735 3.517901 TCCCGTCACTCAAGGAATTGTAT 59.482 43.478 0.00 0.00 0.00 2.29
1709 3740 5.869344 CGTCACTCAAGGAATTGTATCTCAA 59.131 40.000 0.00 0.00 40.53 3.02
1710 3741 6.368791 CGTCACTCAAGGAATTGTATCTCAAA 59.631 38.462 0.00 0.00 39.62 2.69
1765 3796 5.724854 AGTTTAAGCCAGGTTCTAGATGGTA 59.275 40.000 11.61 0.00 36.43 3.25
1779 3810 6.636705 TCTAGATGGTACCACAAACATACAC 58.363 40.000 19.09 0.00 0.00 2.90
1783 3814 5.548181 TGGTACCACAAACATACACACTA 57.452 39.130 11.60 0.00 0.00 2.74
1891 3954 5.297029 GGACCATCACTAGGATTGTTTTAGC 59.703 44.000 0.00 0.00 32.40 3.09
2005 4070 9.515020 GTATGTTGTTGTGAACCCATATTAATG 57.485 33.333 0.00 0.00 31.34 1.90
2058 4123 5.486063 TCTTGCCTGTGATTTACCTACCTAA 59.514 40.000 0.00 0.00 0.00 2.69
2150 4215 6.195600 AGTCAATAAAAGGTGGGACAGTTA 57.804 37.500 0.00 0.00 41.80 2.24
2163 4228 3.878699 GGGACAGTTAAGACGGTTTTCAA 59.121 43.478 0.00 0.00 34.24 2.69
2180 4245 4.911514 TTCAAGGAAAACCGGAGAAAAG 57.088 40.909 9.46 0.00 0.00 2.27
2183 4248 2.860009 AGGAAAACCGGAGAAAAGACC 58.140 47.619 9.46 0.11 0.00 3.85
2185 4250 3.154710 GGAAAACCGGAGAAAAGACCAT 58.845 45.455 9.46 0.00 0.00 3.55
2206 4271 9.360093 GACCATATATACGAGGAAAAAGATCAG 57.640 37.037 0.00 0.00 0.00 2.90
2218 4283 2.842208 AAGATCAGAGCGAAGAGACG 57.158 50.000 0.00 0.00 0.00 4.18
2232 4297 0.903454 GAGACGGAGGGGGAACTCAA 60.903 60.000 0.00 0.00 39.27 3.02
2240 4305 2.576648 GAGGGGGAACTCAAGGTTGTAT 59.423 50.000 0.00 0.00 38.41 2.29
2253 4318 6.542821 TCAAGGTTGTATGAAAGAGGAACAT 58.457 36.000 0.00 0.00 0.00 2.71
2330 4399 4.081752 CCATTACTTGGCAAATGGCTAACA 60.082 41.667 14.63 0.00 44.08 2.41
2338 4407 3.264104 GCAAATGGCTAACATGTTGCAT 58.736 40.909 21.42 13.85 44.18 3.96
2344 4413 3.067040 TGGCTAACATGTTGCATGCATAG 59.933 43.478 23.37 18.95 0.00 2.23
2581 13899 6.911250 TGATGTTGAGGTACTTCTACTCAA 57.089 37.500 17.63 12.53 45.83 3.02
2887 14244 1.631898 GTGGTTTTAGGCCCCTACTGA 59.368 52.381 0.00 0.00 0.00 3.41
2898 14257 2.636830 CCCCTACTGAAGCATCACTTG 58.363 52.381 0.00 0.00 39.29 3.16
2934 14293 0.397675 TGATGGGTCGAGCTCCAGAT 60.398 55.000 15.18 0.00 36.38 2.90
2985 14344 0.260816 ATCCATGCAAGGGCTGTGAT 59.739 50.000 8.36 0.00 37.98 3.06
3048 19220 2.472029 AGGGACAGGGATACACAAGAG 58.528 52.381 0.00 0.00 39.74 2.85
3227 19399 6.041069 CAGAATCGTAGGAGAGTAATTCCCTT 59.959 42.308 0.00 0.00 35.20 3.95
3275 19447 8.060020 TGTCAATTTTGTCAAAATCTTTAGCG 57.940 30.769 20.98 7.02 40.05 4.26
3282 19454 5.938322 TGTCAAAATCTTTAGCGTCCATTC 58.062 37.500 0.00 0.00 0.00 2.67
3323 19495 9.817809 GAAGGTGTATAAATGTTGATGAGAGTA 57.182 33.333 0.00 0.00 0.00 2.59
3334 19506 9.442047 AATGTTGATGAGAGTACTTAGAAAAGG 57.558 33.333 0.00 0.00 37.01 3.11
3335 19507 8.190326 TGTTGATGAGAGTACTTAGAAAAGGA 57.810 34.615 0.00 0.00 37.01 3.36
3336 19508 8.307483 TGTTGATGAGAGTACTTAGAAAAGGAG 58.693 37.037 0.00 0.00 37.01 3.69
3337 19509 8.524487 GTTGATGAGAGTACTTAGAAAAGGAGA 58.476 37.037 0.00 0.00 37.01 3.71
3338 19510 8.651589 TGATGAGAGTACTTAGAAAAGGAGAA 57.348 34.615 0.00 0.00 37.01 2.87
3339 19511 8.524487 TGATGAGAGTACTTAGAAAAGGAGAAC 58.476 37.037 0.00 0.00 37.01 3.01
3340 19512 7.834881 TGAGAGTACTTAGAAAAGGAGAACA 57.165 36.000 0.00 0.00 37.01 3.18
3341 19513 7.659186 TGAGAGTACTTAGAAAAGGAGAACAC 58.341 38.462 0.00 0.00 37.01 3.32
3342 19514 7.287005 TGAGAGTACTTAGAAAAGGAGAACACA 59.713 37.037 0.00 0.00 37.01 3.72
3343 19515 8.019656 AGAGTACTTAGAAAAGGAGAACACAA 57.980 34.615 0.00 0.00 37.01 3.33
3503 19675 7.279536 GCACAGAGAGAAATCATGTCTGATAAA 59.720 37.037 12.64 0.00 41.34 1.40
3541 19713 1.935327 GCGGTTCTCTACGGAGCAGT 61.935 60.000 0.00 0.00 39.31 4.40
3572 19744 3.873361 CCATACAAGATGTTCGAGCACAT 59.127 43.478 3.33 2.79 40.25 3.21
3626 19798 0.465460 AAGCGCAACCTCCAGTTTGA 60.465 50.000 11.47 0.00 36.18 2.69
3655 19827 1.280133 CTTCCCAGGCTCTTGTGATCA 59.720 52.381 0.00 0.00 0.00 2.92
3787 19959 0.250553 CGTGAAAGGGGTGGTTGCTA 60.251 55.000 0.00 0.00 0.00 3.49
3854 20026 4.647853 AGTACACGGGATAGCTAACATTCA 59.352 41.667 0.00 0.00 0.00 2.57
3859 20031 4.141711 ACGGGATAGCTAACATTCATGTGT 60.142 41.667 0.00 0.00 41.61 3.72
3913 20085 0.917533 AGTCTGGAATCAGCATGCCT 59.082 50.000 15.66 0.00 40.69 4.75
3924 20096 1.068748 CAGCATGCCTGTTCTGAACAC 60.069 52.381 18.69 11.05 36.25 3.32
4038 20210 1.379044 AGTGGCCAAGCATACTGCC 60.379 57.895 7.24 0.00 46.52 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.344763 GGTCTGCAGTGTCAGGTTACT 59.655 52.381 14.67 0.00 34.91 2.24
1 2 1.070134 TGGTCTGCAGTGTCAGGTTAC 59.930 52.381 14.67 0.36 34.91 2.50
4 5 1.447643 GTGGTCTGCAGTGTCAGGT 59.552 57.895 14.67 0.00 34.91 4.00
5 6 1.302033 GGTGGTCTGCAGTGTCAGG 60.302 63.158 14.67 0.00 34.91 3.86
6 7 1.665916 CGGTGGTCTGCAGTGTCAG 60.666 63.158 14.67 7.90 35.46 3.51
7 8 2.421314 CGGTGGTCTGCAGTGTCA 59.579 61.111 14.67 7.89 0.00 3.58
8 9 3.044305 GCGGTGGTCTGCAGTGTC 61.044 66.667 14.67 5.73 44.61 3.67
14 15 2.740714 GATTCGTGCGGTGGTCTGC 61.741 63.158 0.00 0.00 45.37 4.26
15 16 0.670546 AAGATTCGTGCGGTGGTCTG 60.671 55.000 0.00 0.00 0.00 3.51
16 17 0.670546 CAAGATTCGTGCGGTGGTCT 60.671 55.000 0.00 0.00 0.00 3.85
17 18 0.669318 TCAAGATTCGTGCGGTGGTC 60.669 55.000 0.00 0.00 0.00 4.02
18 19 0.250124 TTCAAGATTCGTGCGGTGGT 60.250 50.000 0.00 0.00 0.00 4.16
19 20 0.871722 TTTCAAGATTCGTGCGGTGG 59.128 50.000 0.00 0.00 0.00 4.61
20 21 1.135972 CCTTTCAAGATTCGTGCGGTG 60.136 52.381 0.00 0.00 0.00 4.94
21 22 1.156736 CCTTTCAAGATTCGTGCGGT 58.843 50.000 0.00 0.00 0.00 5.68
22 23 0.447801 CCCTTTCAAGATTCGTGCGG 59.552 55.000 0.00 0.00 0.00 5.69
23 24 0.179189 GCCCTTTCAAGATTCGTGCG 60.179 55.000 0.00 0.00 0.00 5.34
24 25 0.171231 GGCCCTTTCAAGATTCGTGC 59.829 55.000 0.00 0.00 0.00 5.34
25 26 0.447801 CGGCCCTTTCAAGATTCGTG 59.552 55.000 0.00 0.00 0.00 4.35
26 27 0.323629 TCGGCCCTTTCAAGATTCGT 59.676 50.000 0.00 0.00 0.00 3.85
27 28 1.130561 GTTCGGCCCTTTCAAGATTCG 59.869 52.381 0.00 0.00 0.00 3.34
28 29 1.130561 CGTTCGGCCCTTTCAAGATTC 59.869 52.381 0.00 0.00 0.00 2.52
29 30 1.165270 CGTTCGGCCCTTTCAAGATT 58.835 50.000 0.00 0.00 0.00 2.40
30 31 0.676782 CCGTTCGGCCCTTTCAAGAT 60.677 55.000 0.00 0.00 0.00 2.40
31 32 1.302192 CCGTTCGGCCCTTTCAAGA 60.302 57.895 0.00 0.00 0.00 3.02
32 33 1.302192 TCCGTTCGGCCCTTTCAAG 60.302 57.895 6.35 0.00 0.00 3.02
33 34 1.598685 GTCCGTTCGGCCCTTTCAA 60.599 57.895 6.35 0.00 0.00 2.69
34 35 1.186917 TAGTCCGTTCGGCCCTTTCA 61.187 55.000 6.35 0.00 0.00 2.69
35 36 0.459759 CTAGTCCGTTCGGCCCTTTC 60.460 60.000 6.35 0.00 0.00 2.62
36 37 0.901580 TCTAGTCCGTTCGGCCCTTT 60.902 55.000 6.35 0.00 0.00 3.11
37 38 0.686769 ATCTAGTCCGTTCGGCCCTT 60.687 55.000 6.35 0.00 0.00 3.95
38 39 0.184451 TATCTAGTCCGTTCGGCCCT 59.816 55.000 6.35 7.32 0.00 5.19
39 40 1.000496 CTTATCTAGTCCGTTCGGCCC 60.000 57.143 6.35 0.00 0.00 5.80
40 41 1.602416 GCTTATCTAGTCCGTTCGGCC 60.602 57.143 6.35 0.00 0.00 6.13
41 42 1.768510 GCTTATCTAGTCCGTTCGGC 58.231 55.000 6.35 2.31 0.00 5.54
42 43 1.334779 CCGCTTATCTAGTCCGTTCGG 60.335 57.143 4.74 4.74 0.00 4.30
43 44 1.334779 CCCGCTTATCTAGTCCGTTCG 60.335 57.143 0.00 0.00 0.00 3.95
44 45 1.952296 TCCCGCTTATCTAGTCCGTTC 59.048 52.381 0.00 0.00 0.00 3.95
45 46 1.955080 CTCCCGCTTATCTAGTCCGTT 59.045 52.381 0.00 0.00 0.00 4.44
46 47 1.133853 ACTCCCGCTTATCTAGTCCGT 60.134 52.381 0.00 0.00 0.00 4.69
47 48 1.536331 GACTCCCGCTTATCTAGTCCG 59.464 57.143 0.00 0.00 32.27 4.79
48 49 1.536331 CGACTCCCGCTTATCTAGTCC 59.464 57.143 0.00 0.00 34.42 3.85
49 50 1.536331 CCGACTCCCGCTTATCTAGTC 59.464 57.143 0.00 0.00 36.84 2.59
50 51 1.606903 CCGACTCCCGCTTATCTAGT 58.393 55.000 0.00 0.00 36.84 2.57
51 52 0.882474 CCCGACTCCCGCTTATCTAG 59.118 60.000 0.00 0.00 36.84 2.43
52 53 0.538977 CCCCGACTCCCGCTTATCTA 60.539 60.000 0.00 0.00 36.84 1.98
53 54 1.833049 CCCCGACTCCCGCTTATCT 60.833 63.158 0.00 0.00 36.84 1.98
54 55 2.735237 CCCCGACTCCCGCTTATC 59.265 66.667 0.00 0.00 36.84 1.75
55 56 3.547513 GCCCCGACTCCCGCTTAT 61.548 66.667 0.00 0.00 36.84 1.73
56 57 4.772231 AGCCCCGACTCCCGCTTA 62.772 66.667 0.00 0.00 36.84 3.09
81 82 2.050077 GCGAAAAGGTGCCACAGC 60.050 61.111 0.00 0.00 40.48 4.40
82 83 1.283793 CTGCGAAAAGGTGCCACAG 59.716 57.895 0.00 0.00 0.00 3.66
83 84 2.844451 GCTGCGAAAAGGTGCCACA 61.844 57.895 0.00 0.00 0.00 4.17
84 85 2.050077 GCTGCGAAAAGGTGCCAC 60.050 61.111 0.00 0.00 0.00 5.01
85 86 0.607762 TATGCTGCGAAAAGGTGCCA 60.608 50.000 0.00 0.00 0.00 4.92
86 87 0.525761 TTATGCTGCGAAAAGGTGCC 59.474 50.000 0.00 0.00 0.00 5.01
87 88 2.346099 TTTATGCTGCGAAAAGGTGC 57.654 45.000 0.00 0.00 0.00 5.01
88 89 3.853671 GTGATTTATGCTGCGAAAAGGTG 59.146 43.478 4.00 0.00 0.00 4.00
89 90 3.758554 AGTGATTTATGCTGCGAAAAGGT 59.241 39.130 4.00 0.00 0.00 3.50
90 91 4.100529 CAGTGATTTATGCTGCGAAAAGG 58.899 43.478 4.00 0.00 0.00 3.11
91 92 3.545078 GCAGTGATTTATGCTGCGAAAAG 59.455 43.478 0.00 0.00 44.64 2.27
92 93 3.500982 GCAGTGATTTATGCTGCGAAAA 58.499 40.909 0.00 3.16 44.64 2.29
93 94 3.135414 GCAGTGATTTATGCTGCGAAA 57.865 42.857 0.00 0.00 44.64 3.46
94 95 2.830772 GCAGTGATTTATGCTGCGAA 57.169 45.000 0.00 0.00 44.64 4.70
100 101 4.259970 CGTACAGACAGCAGTGATTTATGC 60.260 45.833 0.00 0.00 42.87 3.14
101 102 5.102313 TCGTACAGACAGCAGTGATTTATG 58.898 41.667 0.00 0.00 0.00 1.90
102 103 5.324784 TCGTACAGACAGCAGTGATTTAT 57.675 39.130 0.00 0.00 0.00 1.40
103 104 4.776795 TCGTACAGACAGCAGTGATTTA 57.223 40.909 0.00 0.00 0.00 1.40
104 105 3.660501 TCGTACAGACAGCAGTGATTT 57.339 42.857 0.00 0.00 0.00 2.17
105 106 3.876274 ATCGTACAGACAGCAGTGATT 57.124 42.857 0.00 0.00 0.00 2.57
106 107 3.732169 CGAATCGTACAGACAGCAGTGAT 60.732 47.826 0.00 0.00 0.00 3.06
107 108 2.414161 CGAATCGTACAGACAGCAGTGA 60.414 50.000 0.00 0.00 0.00 3.41
108 109 1.914051 CGAATCGTACAGACAGCAGTG 59.086 52.381 0.00 0.00 0.00 3.66
109 110 1.135373 CCGAATCGTACAGACAGCAGT 60.135 52.381 0.82 0.00 0.00 4.40
113 114 3.571571 TGAAACCGAATCGTACAGACAG 58.428 45.455 0.82 0.00 0.00 3.51
142 143 2.159028 GGATCCCCGACTTCTCTTTCTG 60.159 54.545 0.00 0.00 0.00 3.02
146 147 1.834263 CAAGGATCCCCGACTTCTCTT 59.166 52.381 8.55 0.00 37.58 2.85
162 243 4.274459 CACAAGAGGAGACAAAAGTCAAGG 59.726 45.833 0.00 0.00 0.00 3.61
165 246 4.162320 AGACACAAGAGGAGACAAAAGTCA 59.838 41.667 0.00 0.00 0.00 3.41
171 252 4.963318 ATTCAGACACAAGAGGAGACAA 57.037 40.909 0.00 0.00 0.00 3.18
192 273 3.747010 TCCAAAGCGCTCGTTTGTATTTA 59.253 39.130 12.06 0.00 33.75 1.40
195 276 1.803334 TCCAAAGCGCTCGTTTGTAT 58.197 45.000 12.06 0.00 33.75 2.29
196 277 1.584175 TTCCAAAGCGCTCGTTTGTA 58.416 45.000 12.06 0.00 33.75 2.41
197 278 0.736053 TTTCCAAAGCGCTCGTTTGT 59.264 45.000 12.06 0.00 33.75 2.83
198 279 1.398595 CTTTCCAAAGCGCTCGTTTG 58.601 50.000 12.06 12.27 35.11 2.93
199 280 3.845625 CTTTCCAAAGCGCTCGTTT 57.154 47.368 12.06 0.00 0.00 3.60
216 318 2.665165 CTCCTCTGAGTCCAGTATGCT 58.335 52.381 3.66 0.00 41.16 3.79
230 332 1.972588 AACATGCCCTAACCTCCTCT 58.027 50.000 0.00 0.00 0.00 3.69
241 343 3.096092 TCTATTGGAACCAAACATGCCC 58.904 45.455 10.36 0.00 39.55 5.36
242 344 3.763897 AGTCTATTGGAACCAAACATGCC 59.236 43.478 10.36 0.00 39.55 4.40
243 345 5.391312 AAGTCTATTGGAACCAAACATGC 57.609 39.130 10.36 1.47 39.55 4.06
244 346 9.191995 GTTTTAAGTCTATTGGAACCAAACATG 57.808 33.333 10.36 0.00 39.55 3.21
245 347 9.143155 AGTTTTAAGTCTATTGGAACCAAACAT 57.857 29.630 10.36 0.95 39.55 2.71
246 348 8.528044 AGTTTTAAGTCTATTGGAACCAAACA 57.472 30.769 10.36 1.39 39.55 2.83
248 350 9.856162 ACTAGTTTTAAGTCTATTGGAACCAAA 57.144 29.630 10.36 0.39 39.55 3.28
249 351 9.280174 CACTAGTTTTAAGTCTATTGGAACCAA 57.720 33.333 8.75 8.75 40.47 3.67
250 352 8.653191 TCACTAGTTTTAAGTCTATTGGAACCA 58.347 33.333 0.00 0.00 0.00 3.67
251 353 8.933807 GTCACTAGTTTTAAGTCTATTGGAACC 58.066 37.037 0.00 0.00 0.00 3.62
252 354 9.708092 AGTCACTAGTTTTAAGTCTATTGGAAC 57.292 33.333 0.00 0.00 0.00 3.62
309 411 6.859112 AGGTGTGTCAGATGACTTATAAGT 57.141 37.500 18.05 18.05 44.99 2.24
310 412 6.758886 GGAAGGTGTGTCAGATGACTTATAAG 59.241 42.308 11.05 11.05 44.99 1.73
311 413 6.351881 GGGAAGGTGTGTCAGATGACTTATAA 60.352 42.308 13.74 0.00 44.99 0.98
312 414 5.128827 GGGAAGGTGTGTCAGATGACTTATA 59.871 44.000 13.74 0.00 44.99 0.98
313 415 4.080863 GGGAAGGTGTGTCAGATGACTTAT 60.081 45.833 13.74 0.00 44.99 1.73
314 416 3.260884 GGGAAGGTGTGTCAGATGACTTA 59.739 47.826 13.74 0.82 44.99 2.24
315 417 2.039084 GGGAAGGTGTGTCAGATGACTT 59.961 50.000 13.74 0.00 44.99 3.01
316 418 1.625818 GGGAAGGTGTGTCAGATGACT 59.374 52.381 13.74 0.00 44.99 3.41
317 419 1.347707 TGGGAAGGTGTGTCAGATGAC 59.652 52.381 6.01 6.01 44.97 3.06
318 420 1.347707 GTGGGAAGGTGTGTCAGATGA 59.652 52.381 0.00 0.00 0.00 2.92
319 421 1.072173 TGTGGGAAGGTGTGTCAGATG 59.928 52.381 0.00 0.00 0.00 2.90
320 422 1.072331 GTGTGGGAAGGTGTGTCAGAT 59.928 52.381 0.00 0.00 0.00 2.90
321 423 0.468226 GTGTGGGAAGGTGTGTCAGA 59.532 55.000 0.00 0.00 0.00 3.27
322 424 0.535102 GGTGTGGGAAGGTGTGTCAG 60.535 60.000 0.00 0.00 0.00 3.51
323 425 1.275421 TGGTGTGGGAAGGTGTGTCA 61.275 55.000 0.00 0.00 0.00 3.58
324 426 0.106918 TTGGTGTGGGAAGGTGTGTC 60.107 55.000 0.00 0.00 0.00 3.67
325 427 0.555769 ATTGGTGTGGGAAGGTGTGT 59.444 50.000 0.00 0.00 0.00 3.72
326 428 1.247567 GATTGGTGTGGGAAGGTGTG 58.752 55.000 0.00 0.00 0.00 3.82
327 429 0.112412 GGATTGGTGTGGGAAGGTGT 59.888 55.000 0.00 0.00 0.00 4.16
328 430 0.112218 TGGATTGGTGTGGGAAGGTG 59.888 55.000 0.00 0.00 0.00 4.00
329 431 1.084018 ATGGATTGGTGTGGGAAGGT 58.916 50.000 0.00 0.00 0.00 3.50
330 432 3.117550 TGATATGGATTGGTGTGGGAAGG 60.118 47.826 0.00 0.00 0.00 3.46
331 433 4.169059 TGATATGGATTGGTGTGGGAAG 57.831 45.455 0.00 0.00 0.00 3.46
332 434 4.472496 CATGATATGGATTGGTGTGGGAA 58.528 43.478 0.00 0.00 0.00 3.97
333 435 3.751569 GCATGATATGGATTGGTGTGGGA 60.752 47.826 0.00 0.00 0.00 4.37
334 436 2.559668 GCATGATATGGATTGGTGTGGG 59.440 50.000 0.00 0.00 0.00 4.61
335 437 3.224269 TGCATGATATGGATTGGTGTGG 58.776 45.455 0.00 0.00 0.00 4.17
336 438 4.279922 ACATGCATGATATGGATTGGTGTG 59.720 41.667 32.75 1.79 39.45 3.82
337 439 4.279922 CACATGCATGATATGGATTGGTGT 59.720 41.667 32.75 3.65 39.45 4.16
338 440 4.521256 TCACATGCATGATATGGATTGGTG 59.479 41.667 32.75 15.33 39.45 4.17
339 441 4.732065 TCACATGCATGATATGGATTGGT 58.268 39.130 32.75 2.76 39.45 3.67
340 442 5.394115 CCATCACATGCATGATATGGATTGG 60.394 44.000 36.00 24.85 39.45 3.16
341 443 5.394115 CCCATCACATGCATGATATGGATTG 60.394 44.000 38.26 27.66 39.45 2.67
342 444 4.709886 CCCATCACATGCATGATATGGATT 59.290 41.667 38.26 17.43 39.45 3.01
343 445 4.017867 TCCCATCACATGCATGATATGGAT 60.018 41.667 38.26 26.66 42.40 3.41
344 446 3.331294 TCCCATCACATGCATGATATGGA 59.669 43.478 38.26 29.39 41.62 3.41
345 447 3.442625 GTCCCATCACATGCATGATATGG 59.557 47.826 34.23 34.23 37.20 2.74
346 448 3.442625 GGTCCCATCACATGCATGATATG 59.557 47.826 32.75 28.45 37.20 1.78
347 449 3.562826 GGGTCCCATCACATGCATGATAT 60.563 47.826 32.75 20.66 37.20 1.63
348 450 2.224843 GGGTCCCATCACATGCATGATA 60.225 50.000 32.75 19.36 37.20 2.15
349 451 1.479942 GGGTCCCATCACATGCATGAT 60.480 52.381 32.75 15.35 40.03 2.45
350 452 0.106569 GGGTCCCATCACATGCATGA 60.107 55.000 32.75 13.48 0.00 3.07
351 453 0.396001 TGGGTCCCATCACATGCATG 60.396 55.000 25.09 25.09 0.00 4.06
352 454 0.396139 GTGGGTCCCATCACATGCAT 60.396 55.000 15.49 0.00 35.28 3.96
353 455 1.001020 GTGGGTCCCATCACATGCA 60.001 57.895 15.49 0.00 35.28 3.96
354 456 2.114670 CGTGGGTCCCATCACATGC 61.115 63.158 15.49 0.00 35.28 4.06
355 457 2.114670 GCGTGGGTCCCATCACATG 61.115 63.158 15.49 0.00 35.28 3.21
356 458 2.135903 TTGCGTGGGTCCCATCACAT 62.136 55.000 15.49 0.00 35.28 3.21
357 459 2.344878 TTTGCGTGGGTCCCATCACA 62.345 55.000 15.49 10.09 35.28 3.58
358 460 1.175983 TTTTGCGTGGGTCCCATCAC 61.176 55.000 15.49 7.36 35.28 3.06
359 461 0.893270 CTTTTGCGTGGGTCCCATCA 60.893 55.000 15.49 12.65 35.28 3.07
360 462 0.608035 TCTTTTGCGTGGGTCCCATC 60.608 55.000 15.49 9.98 35.28 3.51
361 463 0.609131 CTCTTTTGCGTGGGTCCCAT 60.609 55.000 15.49 0.00 35.28 4.00
362 464 1.228124 CTCTTTTGCGTGGGTCCCA 60.228 57.895 6.47 6.47 0.00 4.37
363 465 1.971695 CCTCTTTTGCGTGGGTCCC 60.972 63.158 0.00 0.00 0.00 4.46
364 466 0.322546 ATCCTCTTTTGCGTGGGTCC 60.323 55.000 0.00 0.00 0.00 4.46
365 467 0.804989 CATCCTCTTTTGCGTGGGTC 59.195 55.000 0.00 0.00 0.00 4.46
366 468 0.400213 TCATCCTCTTTTGCGTGGGT 59.600 50.000 0.00 0.00 0.00 4.51
367 469 0.804989 GTCATCCTCTTTTGCGTGGG 59.195 55.000 0.00 0.00 0.00 4.61
368 470 1.813513 AGTCATCCTCTTTTGCGTGG 58.186 50.000 0.00 0.00 0.00 4.94
369 471 6.662414 TTATAAGTCATCCTCTTTTGCGTG 57.338 37.500 0.00 0.00 0.00 5.34
370 472 7.865706 ATTTATAAGTCATCCTCTTTTGCGT 57.134 32.000 0.00 0.00 0.00 5.24
371 473 9.573133 AAAATTTATAAGTCATCCTCTTTTGCG 57.427 29.630 0.00 0.00 0.00 4.85
383 485 8.808092 CCACCCCAACTTAAAATTTATAAGTCA 58.192 33.333 18.04 0.00 41.49 3.41
384 486 9.027202 TCCACCCCAACTTAAAATTTATAAGTC 57.973 33.333 18.04 0.00 41.49 3.01
385 487 8.959676 TCCACCCCAACTTAAAATTTATAAGT 57.040 30.769 14.66 14.66 43.57 2.24
386 488 7.979537 GCTCCACCCCAACTTAAAATTTATAAG 59.020 37.037 13.80 13.80 36.62 1.73
387 489 7.455008 TGCTCCACCCCAACTTAAAATTTATAA 59.545 33.333 0.00 0.00 0.00 0.98
388 490 6.954684 TGCTCCACCCCAACTTAAAATTTATA 59.045 34.615 0.00 0.00 0.00 0.98
389 491 5.782845 TGCTCCACCCCAACTTAAAATTTAT 59.217 36.000 0.00 0.00 0.00 1.40
390 492 5.148502 TGCTCCACCCCAACTTAAAATTTA 58.851 37.500 0.00 0.00 0.00 1.40
391 493 3.970640 TGCTCCACCCCAACTTAAAATTT 59.029 39.130 0.00 0.00 0.00 1.82
392 494 3.582164 TGCTCCACCCCAACTTAAAATT 58.418 40.909 0.00 0.00 0.00 1.82
393 495 3.252554 TGCTCCACCCCAACTTAAAAT 57.747 42.857 0.00 0.00 0.00 1.82
394 496 2.696187 GTTGCTCCACCCCAACTTAAAA 59.304 45.455 0.00 0.00 38.55 1.52
395 497 2.091555 AGTTGCTCCACCCCAACTTAAA 60.092 45.455 0.56 0.00 46.86 1.52
396 498 1.497286 AGTTGCTCCACCCCAACTTAA 59.503 47.619 0.56 0.00 46.86 1.85
397 499 1.145571 AGTTGCTCCACCCCAACTTA 58.854 50.000 0.56 0.00 46.86 2.24
398 500 1.930520 AGTTGCTCCACCCCAACTT 59.069 52.632 0.56 0.00 46.86 2.66
399 501 3.674278 AGTTGCTCCACCCCAACT 58.326 55.556 0.56 0.56 44.86 3.16
400 502 1.818674 CATAAGTTGCTCCACCCCAAC 59.181 52.381 0.00 0.00 41.13 3.77
401 503 1.707989 TCATAAGTTGCTCCACCCCAA 59.292 47.619 0.00 0.00 0.00 4.12
402 504 1.004277 GTCATAAGTTGCTCCACCCCA 59.996 52.381 0.00 0.00 0.00 4.96
403 505 1.282157 AGTCATAAGTTGCTCCACCCC 59.718 52.381 0.00 0.00 0.00 4.95
404 506 2.789409 AGTCATAAGTTGCTCCACCC 57.211 50.000 0.00 0.00 0.00 4.61
405 507 7.484035 CTTATAAGTCATAAGTTGCTCCACC 57.516 40.000 4.18 0.00 40.84 4.61
416 518 7.504926 AGTCACCCCAACTTATAAGTCATAA 57.495 36.000 18.28 0.00 38.57 1.90
417 519 7.504926 AAGTCACCCCAACTTATAAGTCATA 57.495 36.000 18.28 0.00 38.57 2.15
418 520 6.388619 AAGTCACCCCAACTTATAAGTCAT 57.611 37.500 18.28 1.19 38.57 3.06
419 521 5.836024 AAGTCACCCCAACTTATAAGTCA 57.164 39.130 18.28 0.00 38.57 3.41
438 540 4.828829 CCAAACAGACCCGACTTATAAGT 58.171 43.478 18.05 18.05 43.16 2.24
439 541 3.621715 GCCAAACAGACCCGACTTATAAG 59.378 47.826 11.05 11.05 0.00 1.73
440 542 3.008157 TGCCAAACAGACCCGACTTATAA 59.992 43.478 0.00 0.00 0.00 0.98
441 543 2.568062 TGCCAAACAGACCCGACTTATA 59.432 45.455 0.00 0.00 0.00 0.98
442 544 1.349688 TGCCAAACAGACCCGACTTAT 59.650 47.619 0.00 0.00 0.00 1.73
443 545 0.759959 TGCCAAACAGACCCGACTTA 59.240 50.000 0.00 0.00 0.00 2.24
444 546 0.106918 TTGCCAAACAGACCCGACTT 60.107 50.000 0.00 0.00 0.00 3.01
445 547 0.106918 TTTGCCAAACAGACCCGACT 60.107 50.000 0.00 0.00 0.00 4.18
446 548 0.741915 TTTTGCCAAACAGACCCGAC 59.258 50.000 0.00 0.00 0.00 4.79
447 549 1.698506 ATTTTGCCAAACAGACCCGA 58.301 45.000 0.00 0.00 0.00 5.14
448 550 3.005367 ACTTATTTTGCCAAACAGACCCG 59.995 43.478 0.00 0.00 0.00 5.28
449 551 4.038642 TGACTTATTTTGCCAAACAGACCC 59.961 41.667 0.00 0.00 0.00 4.46
450 552 5.195001 TGACTTATTTTGCCAAACAGACC 57.805 39.130 0.00 0.00 0.00 3.85
451 553 7.713764 AAATGACTTATTTTGCCAAACAGAC 57.286 32.000 0.00 0.00 35.47 3.51
452 554 8.729805 AAAAATGACTTATTTTGCCAAACAGA 57.270 26.923 0.00 0.00 45.74 3.41
478 580 9.878667 TCACCAACTTATATATCGAAAAGTGAA 57.121 29.630 0.00 0.00 32.69 3.18
479 581 9.309516 GTCACCAACTTATATATCGAAAAGTGA 57.690 33.333 0.00 1.80 32.69 3.41
480 582 9.314321 AGTCACCAACTTATATATCGAAAAGTG 57.686 33.333 0.00 0.00 33.03 3.16
481 583 9.886132 AAGTCACCAACTTATATATCGAAAAGT 57.114 29.630 0.00 0.00 46.55 2.66
495 597 6.155393 TTTGGTTCCAAATAAGTCACCAACTT 59.845 34.615 12.29 0.00 42.59 2.66
496 598 4.798882 TGGTTCCAAATAAGTCACCAACT 58.201 39.130 0.00 0.00 41.10 3.16
497 599 5.523438 TTGGTTCCAAATAAGTCACCAAC 57.477 39.130 1.42 0.00 38.97 3.77
498 600 5.422331 TGTTTGGTTCCAAATAAGTCACCAA 59.578 36.000 18.11 0.00 41.48 3.67
499 601 4.956700 TGTTTGGTTCCAAATAAGTCACCA 59.043 37.500 18.11 7.77 38.07 4.17
500 602 5.508994 CCTGTTTGGTTCCAAATAAGTCACC 60.509 44.000 18.11 5.59 38.07 4.02
501 603 5.528870 CCTGTTTGGTTCCAAATAAGTCAC 58.471 41.667 18.11 6.79 38.07 3.67
502 604 4.038642 GCCTGTTTGGTTCCAAATAAGTCA 59.961 41.667 18.11 10.94 38.07 3.41
503 605 4.556233 GCCTGTTTGGTTCCAAATAAGTC 58.444 43.478 18.11 7.50 38.07 3.01
504 606 3.323691 GGCCTGTTTGGTTCCAAATAAGT 59.676 43.478 18.11 0.00 38.07 2.24
505 607 3.306710 GGGCCTGTTTGGTTCCAAATAAG 60.307 47.826 18.11 17.05 38.07 1.73
506 608 2.635427 GGGCCTGTTTGGTTCCAAATAA 59.365 45.455 18.11 10.23 38.07 1.40
507 609 2.158234 AGGGCCTGTTTGGTTCCAAATA 60.158 45.455 18.11 14.87 38.07 1.40
508 610 1.055849 GGGCCTGTTTGGTTCCAAAT 58.944 50.000 18.11 0.00 38.07 2.32
509 611 0.031616 AGGGCCTGTTTGGTTCCAAA 60.032 50.000 4.50 12.29 38.35 3.28
510 612 0.031616 AAGGGCCTGTTTGGTTCCAA 60.032 50.000 6.92 0.00 38.35 3.53
511 613 0.854218 TAAGGGCCTGTTTGGTTCCA 59.146 50.000 6.92 0.00 38.35 3.53
512 614 2.231716 ATAAGGGCCTGTTTGGTTCC 57.768 50.000 6.92 0.00 38.35 3.62
513 615 5.449999 CGAATAATAAGGGCCTGTTTGGTTC 60.450 44.000 6.92 11.50 38.35 3.62
514 616 4.401202 CGAATAATAAGGGCCTGTTTGGTT 59.599 41.667 6.92 4.05 38.35 3.67
515 617 3.951680 CGAATAATAAGGGCCTGTTTGGT 59.048 43.478 6.92 0.00 38.35 3.67
516 618 3.317993 CCGAATAATAAGGGCCTGTTTGG 59.682 47.826 6.92 7.24 39.35 3.28
517 619 3.951680 ACCGAATAATAAGGGCCTGTTTG 59.048 43.478 6.92 1.66 0.00 2.93
518 620 4.245251 ACCGAATAATAAGGGCCTGTTT 57.755 40.909 6.92 6.64 0.00 2.83
519 621 3.945640 ACCGAATAATAAGGGCCTGTT 57.054 42.857 6.92 8.36 0.00 3.16
520 622 3.945640 AACCGAATAATAAGGGCCTGT 57.054 42.857 6.92 0.00 0.00 4.00
521 623 4.204012 TGAAACCGAATAATAAGGGCCTG 58.796 43.478 6.92 0.00 0.00 4.85
522 624 4.513406 TGAAACCGAATAATAAGGGCCT 57.487 40.909 0.00 0.00 0.00 5.19
523 625 5.070685 AGATGAAACCGAATAATAAGGGCC 58.929 41.667 0.00 0.00 0.00 5.80
524 626 7.739498 TTAGATGAAACCGAATAATAAGGGC 57.261 36.000 0.00 0.00 0.00 5.19
525 627 8.730680 CCATTAGATGAAACCGAATAATAAGGG 58.269 37.037 0.00 0.00 0.00 3.95
526 628 9.502091 TCCATTAGATGAAACCGAATAATAAGG 57.498 33.333 0.00 0.00 0.00 2.69
530 632 8.980481 ACTTCCATTAGATGAAACCGAATAAT 57.020 30.769 0.00 0.00 0.00 1.28
549 651 8.210946 TCTGAAGTAGAGAATTTTCAACTTCCA 58.789 33.333 19.43 12.37 39.86 3.53
550 652 8.608844 TCTGAAGTAGAGAATTTTCAACTTCC 57.391 34.615 19.43 10.08 39.86 3.46
556 658 8.378565 ACCAGAATCTGAAGTAGAGAATTTTCA 58.621 33.333 12.53 0.00 39.20 2.69
558 660 7.547370 CGACCAGAATCTGAAGTAGAGAATTTT 59.453 37.037 12.53 0.00 39.20 1.82
560 662 6.406400 CCGACCAGAATCTGAAGTAGAGAATT 60.406 42.308 12.53 0.00 39.20 2.17
603 705 0.660488 CAGAGAGGACGAGACGATGG 59.340 60.000 0.00 0.00 0.00 3.51
608 710 7.442969 TCTCTATTTATTCAGAGAGGACGAGAC 59.557 40.741 0.00 0.00 41.79 3.36
635 737 4.819105 TCTTTTATTTCGGGAGCTCTGA 57.181 40.909 14.64 9.38 0.00 3.27
648 750 4.332543 TGAACATCGCGCTCATCTTTTATT 59.667 37.500 5.56 0.00 0.00 1.40
833 938 6.484643 AGCATAAGTAATCGTTGCATCATCTT 59.515 34.615 0.00 0.00 35.79 2.40
998 1106 0.393537 GCTAGTCCTTGCTGCCATGT 60.394 55.000 0.00 0.00 0.00 3.21
1021 1129 0.878523 TTTCTCCACCGCGTTGACAG 60.879 55.000 4.75 0.29 0.00 3.51
1080 1188 1.281867 CATGGGGCACTAAGGAAGTCA 59.718 52.381 0.00 0.00 35.76 3.41
1273 1384 7.121907 GGAGAGTTCCAAATCTTTTAGCATCTT 59.878 37.037 0.00 0.00 43.45 2.40
1297 1408 5.309543 TGACCTCCTTCTCAGTTAAAATGGA 59.690 40.000 0.00 0.00 0.00 3.41
1515 3543 7.535738 TGATCTTCCATACAGATAAGTCCCTA 58.464 38.462 0.00 0.00 30.70 3.53
1516 3544 6.385443 TGATCTTCCATACAGATAAGTCCCT 58.615 40.000 0.00 0.00 30.70 4.20
1703 3734 5.354513 CAGAGAGTTGCATCACATTTGAGAT 59.645 40.000 0.00 0.00 34.35 2.75
1704 3735 4.694037 CAGAGAGTTGCATCACATTTGAGA 59.306 41.667 0.00 0.00 34.35 3.27
1709 3740 3.750130 GTGACAGAGAGTTGCATCACATT 59.250 43.478 7.71 0.00 37.11 2.71
1710 3741 3.332919 GTGACAGAGAGTTGCATCACAT 58.667 45.455 7.71 0.00 37.11 3.21
1765 3796 5.001232 GGTCATAGTGTGTATGTTTGTGGT 58.999 41.667 0.00 0.00 0.00 4.16
1779 3810 6.395629 TCCTCGAAAGTTTAAGGTCATAGTG 58.604 40.000 13.56 0.00 0.00 2.74
1783 3814 5.740290 TCTCCTCGAAAGTTTAAGGTCAT 57.260 39.130 13.56 0.00 0.00 3.06
1891 3954 2.229784 GGTCAAGGATGAACCAGCAAAG 59.770 50.000 0.00 0.00 37.29 2.77
1987 4052 8.249638 CACAATCACATTAATATGGGTTCACAA 58.750 33.333 0.00 0.00 36.51 3.33
2163 4228 2.173996 TGGTCTTTTCTCCGGTTTTCCT 59.826 45.455 0.00 0.00 37.95 3.36
2180 4245 9.360093 CTGATCTTTTTCCTCGTATATATGGTC 57.640 37.037 2.10 0.00 0.00 4.02
2183 4248 9.081997 GCTCTGATCTTTTTCCTCGTATATATG 57.918 37.037 0.00 0.00 0.00 1.78
2185 4250 7.174426 TCGCTCTGATCTTTTTCCTCGTATATA 59.826 37.037 0.00 0.00 0.00 0.86
2201 4266 1.002900 CTCCGTCTCTTCGCTCTGATC 60.003 57.143 0.00 0.00 0.00 2.92
2206 4271 2.776913 CCCCTCCGTCTCTTCGCTC 61.777 68.421 0.00 0.00 0.00 5.03
2218 4283 0.038310 CAACCTTGAGTTCCCCCTCC 59.962 60.000 0.00 0.00 36.18 4.30
2232 4297 9.178758 GAATAATGTTCCTCTTTCATACAACCT 57.821 33.333 0.00 0.00 0.00 3.50
2278 4343 7.445402 TGCTTCCAGGCAATTATAAATCTCTAC 59.555 37.037 0.00 0.00 39.43 2.59
2279 4344 7.517320 TGCTTCCAGGCAATTATAAATCTCTA 58.483 34.615 0.00 0.00 39.43 2.43
2280 4345 6.367983 TGCTTCCAGGCAATTATAAATCTCT 58.632 36.000 0.00 0.00 39.43 3.10
2281 4346 6.639632 TGCTTCCAGGCAATTATAAATCTC 57.360 37.500 0.00 0.00 39.43 2.75
2324 4391 3.047796 GCTATGCATGCAACATGTTAGC 58.952 45.455 26.68 25.58 0.00 3.09
2344 4413 7.965107 GCATCTGTATATGTTATAAAGGCAAGC 59.035 37.037 0.00 0.00 0.00 4.01
2713 14070 3.760738 TCTGCATTCAACCACCAATACA 58.239 40.909 0.00 0.00 0.00 2.29
2785 14142 0.972883 GGTTCCACTCTCTGAGCACT 59.027 55.000 0.00 0.00 32.04 4.40
2898 14257 4.438200 CCCATCACGGTACTTGCAAATAAC 60.438 45.833 0.00 0.00 0.00 1.89
2985 14344 3.840666 GAGGAGGTATAGGGATCATTGCA 59.159 47.826 0.00 0.00 0.00 4.08
3048 19220 5.178797 TCTCTAAGTTGCTTGACTATTGCC 58.821 41.667 0.00 0.00 0.00 4.52
3193 19365 6.433404 ACTCTCCTACGATTCTGTAAGTTCAA 59.567 38.462 0.00 0.00 33.76 2.69
3202 19374 5.536916 AGGGAATTACTCTCCTACGATTCTG 59.463 44.000 0.00 0.00 33.11 3.02
3291 19463 8.836413 CATCAACATTTATACACCTTCGGTATT 58.164 33.333 0.00 0.00 32.11 1.89
3292 19464 8.208224 TCATCAACATTTATACACCTTCGGTAT 58.792 33.333 0.00 0.00 32.11 2.73
3311 19483 8.524487 TCTCCTTTTCTAAGTACTCTCATCAAC 58.476 37.037 0.00 0.00 0.00 3.18
3323 19495 6.248569 TCCTTGTGTTCTCCTTTTCTAAGT 57.751 37.500 0.00 0.00 0.00 2.24
3331 19503 2.354203 GCTCGATCCTTGTGTTCTCCTT 60.354 50.000 0.00 0.00 0.00 3.36
3332 19504 1.205893 GCTCGATCCTTGTGTTCTCCT 59.794 52.381 0.00 0.00 0.00 3.69
3333 19505 1.066858 TGCTCGATCCTTGTGTTCTCC 60.067 52.381 0.00 0.00 0.00 3.71
3334 19506 1.996191 GTGCTCGATCCTTGTGTTCTC 59.004 52.381 0.00 0.00 0.00 2.87
3335 19507 1.344438 TGTGCTCGATCCTTGTGTTCT 59.656 47.619 0.00 0.00 0.00 3.01
3336 19508 1.795768 TGTGCTCGATCCTTGTGTTC 58.204 50.000 0.00 0.00 0.00 3.18
3337 19509 2.146342 CTTGTGCTCGATCCTTGTGTT 58.854 47.619 0.00 0.00 0.00 3.32
3338 19510 1.609061 CCTTGTGCTCGATCCTTGTGT 60.609 52.381 0.00 0.00 0.00 3.72
3339 19511 1.081892 CCTTGTGCTCGATCCTTGTG 58.918 55.000 0.00 0.00 0.00 3.33
3340 19512 0.687354 ACCTTGTGCTCGATCCTTGT 59.313 50.000 0.00 0.00 0.00 3.16
3341 19513 1.081892 CACCTTGTGCTCGATCCTTG 58.918 55.000 0.00 0.00 0.00 3.61
3342 19514 0.036010 CCACCTTGTGCTCGATCCTT 60.036 55.000 0.00 0.00 31.34 3.36
3343 19515 1.194781 ACCACCTTGTGCTCGATCCT 61.195 55.000 0.00 0.00 31.34 3.24
3503 19675 2.962421 CGCCCTATCTTCTCCTCTTCTT 59.038 50.000 0.00 0.00 0.00 2.52
3541 19713 0.541392 ATCTTGTATGGCGAGGCACA 59.459 50.000 0.26 0.00 0.00 4.57
3572 19744 1.980765 CCCCTGGCATATAGAAGCTCA 59.019 52.381 0.00 0.00 0.00 4.26
3626 19798 1.772156 GCCTGGGAAGGGAGCCTAT 60.772 63.158 0.00 0.00 31.13 2.57
3655 19827 4.487714 TCCCGTTTCTATCTTCTGCATT 57.512 40.909 0.00 0.00 0.00 3.56
3787 19959 0.398318 GCCTTGAGGTTCTCCACAGT 59.602 55.000 0.00 0.00 35.86 3.55
3854 20026 4.836825 CTGTTCTGGATTCACCTACACAT 58.163 43.478 0.00 0.00 39.86 3.21
3859 20031 3.327757 ACTTGCTGTTCTGGATTCACCTA 59.672 43.478 0.00 0.00 39.86 3.08
3913 20085 0.108585 GCCCTGGAGTGTTCAGAACA 59.891 55.000 12.24 12.24 39.52 3.18
3924 20096 0.818445 CATTGCTGCTAGCCCTGGAG 60.818 60.000 13.29 3.20 41.51 3.86
3964 20136 1.303806 GGTTCCTTTTGGCCGCCTA 60.304 57.895 11.61 0.00 40.12 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.