Multiple sequence alignment - TraesCS2B01G127500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G127500 chr2B 100.000 4482 0 0 1 4482 95545971 95541490 0.000000e+00 8277.0
1 TraesCS2B01G127500 chr2D 96.304 3680 96 20 812 4482 60793440 60789792 0.000000e+00 6006.0
2 TraesCS2B01G127500 chr2A 94.698 2716 77 18 1778 4458 61385918 61383235 0.000000e+00 4156.0
3 TraesCS2B01G127500 chr2A 90.529 718 33 7 809 1517 61386907 61386216 0.000000e+00 917.0
4 TraesCS2B01G127500 chr2A 88.000 225 11 3 1573 1781 61386212 61385988 7.440000e-63 252.0
5 TraesCS2B01G127500 chr4D 94.968 775 32 7 1 772 374631724 374632494 0.000000e+00 1208.0
6 TraesCS2B01G127500 chr7B 94.208 777 41 4 1 775 674470180 674469406 0.000000e+00 1182.0
7 TraesCS2B01G127500 chr7B 81.105 778 134 11 1 772 511839293 511838523 1.070000e-170 610.0
8 TraesCS2B01G127500 chr7B 80.745 779 134 15 1 772 511807859 511807090 1.070000e-165 593.0
9 TraesCS2B01G127500 chrUn 93.904 771 44 3 1 770 77136776 77136008 0.000000e+00 1160.0
10 TraesCS2B01G127500 chr1B 91.984 736 57 2 1 735 328919211 328919945 0.000000e+00 1031.0
11 TraesCS2B01G127500 chr1B 79.389 786 146 13 1 779 183869257 183870033 1.420000e-149 540.0
12 TraesCS2B01G127500 chr3B 86.974 760 81 7 2741 3483 775476506 775475748 0.000000e+00 839.0
13 TraesCS2B01G127500 chr3B 84.101 434 48 9 2238 2666 775477400 775476983 2.510000e-107 399.0
14 TraesCS2B01G127500 chr3B 79.389 393 47 18 1162 1528 775478096 775477712 3.460000e-61 246.0
15 TraesCS2B01G127500 chr4B 88.515 653 73 2 1 652 545182558 545181907 0.000000e+00 789.0
16 TraesCS2B01G127500 chr5B 95.690 464 19 1 1 464 578821193 578820731 0.000000e+00 745.0
17 TraesCS2B01G127500 chr5B 80.117 171 21 8 4163 4328 419614531 419614693 1.020000e-21 115.0
18 TraesCS2B01G127500 chr3D 86.391 654 72 7 2741 3378 580331760 580331108 0.000000e+00 699.0
19 TraesCS2B01G127500 chr3D 84.793 434 45 9 2238 2666 580332860 580332443 2.490000e-112 416.0
20 TraesCS2B01G127500 chr3D 82.986 288 31 8 1252 1529 580333439 580333160 1.250000e-60 244.0
21 TraesCS2B01G127500 chr3D 88.288 111 11 2 3375 3484 580330949 580330840 1.010000e-26 132.0
22 TraesCS2B01G127500 chr3A 82.688 826 106 19 2681 3483 715646541 715645730 0.000000e+00 699.0
23 TraesCS2B01G127500 chr3A 89.457 313 21 5 2238 2545 715647484 715647179 7.030000e-103 385.0
24 TraesCS2B01G127500 chr3A 83.813 278 25 6 1170 1428 715648143 715647867 3.460000e-61 246.0
25 TraesCS2B01G127500 chr4A 88.031 518 37 10 987 1502 534200173 534200667 1.390000e-164 590.0
26 TraesCS2B01G127500 chr4A 94.624 93 5 0 889 981 534182556 534182648 1.300000e-30 145.0
27 TraesCS2B01G127500 chr7D 88.119 101 11 1 4376 4476 18405142 18405043 7.880000e-23 119.0
28 TraesCS2B01G127500 chr6A 82.558 86 13 2 4219 4303 186279965 186280049 1.730000e-09 75.0
29 TraesCS2B01G127500 chr5D 95.122 41 1 1 732 772 24168315 24168354 3.740000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G127500 chr2B 95541490 95545971 4481 True 8277.000000 8277 100.000000 1 4482 1 chr2B.!!$R1 4481
1 TraesCS2B01G127500 chr2D 60789792 60793440 3648 True 6006.000000 6006 96.304000 812 4482 1 chr2D.!!$R1 3670
2 TraesCS2B01G127500 chr2A 61383235 61386907 3672 True 1775.000000 4156 91.075667 809 4458 3 chr2A.!!$R1 3649
3 TraesCS2B01G127500 chr4D 374631724 374632494 770 False 1208.000000 1208 94.968000 1 772 1 chr4D.!!$F1 771
4 TraesCS2B01G127500 chr7B 674469406 674470180 774 True 1182.000000 1182 94.208000 1 775 1 chr7B.!!$R3 774
5 TraesCS2B01G127500 chr7B 511838523 511839293 770 True 610.000000 610 81.105000 1 772 1 chr7B.!!$R2 771
6 TraesCS2B01G127500 chr7B 511807090 511807859 769 True 593.000000 593 80.745000 1 772 1 chr7B.!!$R1 771
7 TraesCS2B01G127500 chrUn 77136008 77136776 768 True 1160.000000 1160 93.904000 1 770 1 chrUn.!!$R1 769
8 TraesCS2B01G127500 chr1B 328919211 328919945 734 False 1031.000000 1031 91.984000 1 735 1 chr1B.!!$F2 734
9 TraesCS2B01G127500 chr1B 183869257 183870033 776 False 540.000000 540 79.389000 1 779 1 chr1B.!!$F1 778
10 TraesCS2B01G127500 chr3B 775475748 775478096 2348 True 494.666667 839 83.488000 1162 3483 3 chr3B.!!$R1 2321
11 TraesCS2B01G127500 chr4B 545181907 545182558 651 True 789.000000 789 88.515000 1 652 1 chr4B.!!$R1 651
12 TraesCS2B01G127500 chr3D 580330840 580333439 2599 True 372.750000 699 85.614500 1252 3484 4 chr3D.!!$R1 2232
13 TraesCS2B01G127500 chr3A 715645730 715648143 2413 True 443.333333 699 85.319333 1170 3483 3 chr3A.!!$R1 2313

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
834 839 0.107831 CTTCAACTGGACCGGACCAA 59.892 55.000 25.68 9.03 39.59 3.67 F
1245 1276 0.388649 TCGAGGTCGCTCTTGCTTTC 60.389 55.000 0.00 0.00 39.60 2.62 F
1961 2101 2.542178 GCGCTGTTTTTCCGGAAATTTT 59.458 40.909 29.37 0.00 0.00 1.82 F
2897 3873 0.545171 ATGATGAGGTCTGCCCACTG 59.455 55.000 0.00 0.00 34.66 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2750 3726 5.476254 TGACAAGTTGCATCAACCATAATGA 59.524 36.000 1.81 0.0 44.49 2.57 R
2897 3873 2.611292 GACTGCATCAGGAAGCACATAC 59.389 50.000 0.00 0.0 36.62 2.39 R
3245 4241 0.887387 GGTAACCTGGAGCGTTTGCA 60.887 55.000 0.00 0.0 46.23 4.08 R
3782 4940 3.866883 ACACAACAAAACAACCTCTGG 57.133 42.857 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 2.805657 CGAAGTTCCCCTCAAAGTCGTT 60.806 50.000 0.00 0.00 0.00 3.85
309 310 3.649277 ATCACACGCTCCCAGTCGC 62.649 63.158 0.00 0.00 0.00 5.19
695 699 4.144727 GAGAGGAGGGGCGAGGGA 62.145 72.222 0.00 0.00 0.00 4.20
764 769 4.833390 CGAGAGGATGAAAAACCCTAACT 58.167 43.478 0.00 0.00 0.00 2.24
787 792 2.568623 AGGGAACTCGAATTTGTGCT 57.431 45.000 0.00 0.00 32.90 4.40
788 793 2.863809 AGGGAACTCGAATTTGTGCTT 58.136 42.857 0.00 0.00 32.90 3.91
789 794 2.554032 AGGGAACTCGAATTTGTGCTTG 59.446 45.455 0.00 0.00 32.90 4.01
790 795 2.552315 GGGAACTCGAATTTGTGCTTGA 59.448 45.455 0.00 0.00 0.00 3.02
791 796 3.191371 GGGAACTCGAATTTGTGCTTGAT 59.809 43.478 0.00 0.00 0.00 2.57
792 797 4.406943 GGAACTCGAATTTGTGCTTGATC 58.593 43.478 0.00 0.00 0.00 2.92
793 798 4.406943 GAACTCGAATTTGTGCTTGATCC 58.593 43.478 0.00 0.00 0.00 3.36
794 799 2.416547 ACTCGAATTTGTGCTTGATCCG 59.583 45.455 0.00 0.00 0.00 4.18
795 800 2.672874 CTCGAATTTGTGCTTGATCCGA 59.327 45.455 0.00 0.00 0.00 4.55
796 801 2.415168 TCGAATTTGTGCTTGATCCGAC 59.585 45.455 0.00 0.00 0.00 4.79
797 802 2.774007 GAATTTGTGCTTGATCCGACG 58.226 47.619 0.00 0.00 0.00 5.12
798 803 2.093306 ATTTGTGCTTGATCCGACGA 57.907 45.000 0.00 0.00 0.00 4.20
799 804 1.144969 TTTGTGCTTGATCCGACGAC 58.855 50.000 0.00 0.00 0.00 4.34
800 805 0.317160 TTGTGCTTGATCCGACGACT 59.683 50.000 0.00 0.00 0.00 4.18
801 806 0.109272 TGTGCTTGATCCGACGACTC 60.109 55.000 0.00 0.00 0.00 3.36
802 807 1.134530 GTGCTTGATCCGACGACTCG 61.135 60.000 0.00 0.00 39.83 4.18
803 808 2.224885 GCTTGATCCGACGACTCGC 61.225 63.158 0.00 0.00 38.70 5.03
804 809 1.429825 CTTGATCCGACGACTCGCT 59.570 57.895 0.00 0.00 38.70 4.93
805 810 0.863538 CTTGATCCGACGACTCGCTG 60.864 60.000 0.00 0.00 38.70 5.18
806 811 1.303091 TTGATCCGACGACTCGCTGA 61.303 55.000 0.00 0.00 38.70 4.26
807 812 1.297745 GATCCGACGACTCGCTGAC 60.298 63.158 0.00 0.00 38.70 3.51
811 816 3.166630 GACGACTCGCTGACGTGC 61.167 66.667 0.00 0.00 45.78 5.34
834 839 0.107831 CTTCAACTGGACCGGACCAA 59.892 55.000 25.68 9.03 39.59 3.67
835 840 0.768622 TTCAACTGGACCGGACCAAT 59.231 50.000 25.68 14.61 39.59 3.16
846 851 1.224592 GGACCAATGGACCATCGCT 59.775 57.895 15.69 0.00 37.47 4.93
895 900 4.806330 TGGACTACTTTCTTAAGCTGTCG 58.194 43.478 0.00 0.00 37.58 4.35
1051 1066 3.443925 GCGCCTCCCTGCTTTTCC 61.444 66.667 0.00 0.00 0.00 3.13
1245 1276 0.388649 TCGAGGTCGCTCTTGCTTTC 60.389 55.000 0.00 0.00 39.60 2.62
1473 1515 8.149973 TCGCTTTAATGACTGAAAAAGTTAGT 57.850 30.769 0.00 0.00 40.07 2.24
1474 1516 9.263538 TCGCTTTAATGACTGAAAAAGTTAGTA 57.736 29.630 0.00 0.00 40.07 1.82
1478 1520 9.820229 TTTAATGACTGAAAAAGTTAGTATGCG 57.180 29.630 0.00 0.00 40.07 4.73
1531 1578 5.516044 TCAGTTAGACTAGGGCAGTGAATA 58.484 41.667 0.00 0.00 37.72 1.75
1532 1579 6.136857 TCAGTTAGACTAGGGCAGTGAATAT 58.863 40.000 0.00 0.00 37.72 1.28
1536 1583 7.179338 AGTTAGACTAGGGCAGTGAATATATGG 59.821 40.741 0.00 0.00 37.72 2.74
1550 1597 5.647658 TGAATATATGGGCATCCGACAATTC 59.352 40.000 0.00 0.00 35.24 2.17
1952 2092 4.356289 TGTTTCTTAAGCGCTGTTTTTCC 58.644 39.130 12.58 0.00 0.00 3.13
1961 2101 2.542178 GCGCTGTTTTTCCGGAAATTTT 59.458 40.909 29.37 0.00 0.00 1.82
2306 2589 7.592533 CACTGTCCATTTGTAAAACATCTGAAG 59.407 37.037 0.00 0.00 0.00 3.02
2536 2822 8.127150 AGCATGAATAGCTTTTAGTTCCTTTT 57.873 30.769 0.00 0.00 39.87 2.27
2897 3873 0.545171 ATGATGAGGTCTGCCCACTG 59.455 55.000 0.00 0.00 34.66 3.66
3089 4080 7.117285 TGATGCTTATATGTTCAGTGTCTCT 57.883 36.000 0.00 0.00 0.00 3.10
3220 4212 2.485426 CCAGTAACAATGTGCCAGTCAG 59.515 50.000 0.00 0.00 0.00 3.51
3245 4241 5.926542 CGGAAGGTATATTGTGAATCGATGT 59.073 40.000 0.00 0.00 0.00 3.06
3372 4368 7.068061 ACCAAAAACCAAGGTATGTTTAGGTA 58.932 34.615 9.17 0.00 39.33 3.08
3510 4668 0.596600 TCCGTTGACGACAAGCAGAC 60.597 55.000 4.91 0.00 43.02 3.51
3782 4940 2.791158 CGGATAAACAGATTGTTGGCGC 60.791 50.000 0.00 0.00 40.14 6.53
3784 4942 1.610363 TAAACAGATTGTTGGCGCCA 58.390 45.000 29.03 29.03 40.14 5.69
3974 5132 2.814336 GCCCTACTGCTATATGGTTTGC 59.186 50.000 0.00 0.00 0.00 3.68
4077 5235 5.376854 ACACTACCACATGCAAATCTTTC 57.623 39.130 0.00 0.00 0.00 2.62
4167 5325 4.568072 AGTCAATTAGGCATGTGGTACA 57.432 40.909 0.00 0.00 0.00 2.90
4311 5469 4.391830 TCGGAACAAAATGAGCTATGTCAC 59.608 41.667 0.00 0.00 0.00 3.67
4459 5618 3.758554 GACCATGTATGTTGCCAAGAAGT 59.241 43.478 0.00 0.00 0.00 3.01
4462 5621 5.772672 ACCATGTATGTTGCCAAGAAGTTTA 59.227 36.000 0.00 0.00 0.00 2.01
4466 5625 9.206870 CATGTATGTTGCCAAGAAGTTTAAAAT 57.793 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
242 243 0.539901 AGACAGTGGTACTCGCACCT 60.540 55.000 0.00 0.00 39.50 4.00
309 310 3.053828 CAGTTTGGCTGCTTGGGG 58.946 61.111 0.00 0.00 38.52 4.96
475 477 1.228894 TGGAGGACGAGGAGTTGCT 60.229 57.895 0.00 0.00 0.00 3.91
573 575 2.143594 GATCGTCTTCGGGATCGGGG 62.144 65.000 0.00 0.00 37.69 5.73
764 769 3.664107 CACAAATTCGAGTTCCCTCTCA 58.336 45.455 0.00 0.00 35.43 3.27
772 777 3.120199 CGGATCAAGCACAAATTCGAGTT 60.120 43.478 0.00 0.00 0.00 3.01
775 780 2.415168 GTCGGATCAAGCACAAATTCGA 59.585 45.455 0.00 0.00 0.00 3.71
776 781 2.774007 GTCGGATCAAGCACAAATTCG 58.226 47.619 0.00 0.00 0.00 3.34
777 782 2.415168 TCGTCGGATCAAGCACAAATTC 59.585 45.455 0.00 0.00 0.00 2.17
778 783 2.159627 GTCGTCGGATCAAGCACAAATT 59.840 45.455 0.00 0.00 0.00 1.82
779 784 1.732259 GTCGTCGGATCAAGCACAAAT 59.268 47.619 0.00 0.00 0.00 2.32
780 785 1.144969 GTCGTCGGATCAAGCACAAA 58.855 50.000 0.00 0.00 0.00 2.83
781 786 0.317160 AGTCGTCGGATCAAGCACAA 59.683 50.000 0.00 0.00 0.00 3.33
782 787 0.109272 GAGTCGTCGGATCAAGCACA 60.109 55.000 0.00 0.00 0.00 4.57
783 788 1.134530 CGAGTCGTCGGATCAAGCAC 61.135 60.000 3.82 0.00 42.87 4.40
784 789 1.136774 CGAGTCGTCGGATCAAGCA 59.863 57.895 3.82 0.00 42.87 3.91
785 790 2.224885 GCGAGTCGTCGGATCAAGC 61.225 63.158 15.08 0.00 46.91 4.01
786 791 0.863538 CAGCGAGTCGTCGGATCAAG 60.864 60.000 15.08 0.00 46.91 3.02
787 792 1.136774 CAGCGAGTCGTCGGATCAA 59.863 57.895 15.08 0.00 46.91 2.57
788 793 1.743995 TCAGCGAGTCGTCGGATCA 60.744 57.895 15.08 0.00 46.91 2.92
789 794 1.297745 GTCAGCGAGTCGTCGGATC 60.298 63.158 15.08 0.00 46.91 3.36
790 795 2.792599 GTCAGCGAGTCGTCGGAT 59.207 61.111 15.08 0.00 46.91 4.18
791 796 3.785499 CGTCAGCGAGTCGTCGGA 61.785 66.667 15.08 9.73 46.91 4.55
792 797 4.086178 ACGTCAGCGAGTCGTCGG 62.086 66.667 15.08 7.51 46.91 4.79
794 799 3.166630 GCACGTCAGCGAGTCGTC 61.167 66.667 15.08 6.63 39.91 4.20
795 800 2.679132 AAAGCACGTCAGCGAGTCGT 62.679 55.000 15.08 0.00 42.55 4.34
796 801 1.935065 GAAAGCACGTCAGCGAGTCG 61.935 60.000 8.54 8.54 42.00 4.18
797 802 0.664767 AGAAAGCACGTCAGCGAGTC 60.665 55.000 0.00 0.00 42.00 3.36
798 803 0.249489 AAGAAAGCACGTCAGCGAGT 60.249 50.000 0.00 0.00 42.00 4.18
799 804 0.436531 GAAGAAAGCACGTCAGCGAG 59.563 55.000 0.00 0.00 42.00 5.03
800 805 0.249280 TGAAGAAAGCACGTCAGCGA 60.249 50.000 0.00 0.00 42.00 4.93
801 806 0.581529 TTGAAGAAAGCACGTCAGCG 59.418 50.000 0.00 0.00 44.93 5.18
802 807 1.599542 AGTTGAAGAAAGCACGTCAGC 59.400 47.619 0.00 0.00 32.25 4.26
803 808 2.032549 CCAGTTGAAGAAAGCACGTCAG 60.033 50.000 0.00 0.00 31.11 3.51
804 809 1.939934 CCAGTTGAAGAAAGCACGTCA 59.060 47.619 0.00 0.00 0.00 4.35
805 810 2.032808 GTCCAGTTGAAGAAAGCACGTC 60.033 50.000 0.00 0.00 0.00 4.34
806 811 1.940613 GTCCAGTTGAAGAAAGCACGT 59.059 47.619 0.00 0.00 0.00 4.49
807 812 1.264288 GGTCCAGTTGAAGAAAGCACG 59.736 52.381 0.00 0.00 0.00 5.34
811 816 2.143925 GTCCGGTCCAGTTGAAGAAAG 58.856 52.381 0.00 0.00 0.00 2.62
834 839 1.134280 CCAAAGAGAGCGATGGTCCAT 60.134 52.381 3.26 3.26 0.00 3.41
835 840 0.250234 CCAAAGAGAGCGATGGTCCA 59.750 55.000 0.00 0.00 0.00 4.02
846 851 2.807676 GGAAGAAATGGCCCAAAGAGA 58.192 47.619 0.00 0.00 0.00 3.10
895 900 1.004918 CCGATTCCGTAGATGGGCC 60.005 63.158 0.00 0.00 0.00 5.80
1434 1470 7.322222 GTCATTAAAGCGAACAATGCATCTATC 59.678 37.037 0.00 0.00 33.85 2.08
1473 1515 1.464608 GCTGAACAGAAAGCACGCATA 59.535 47.619 5.97 0.00 39.31 3.14
1474 1516 0.239347 GCTGAACAGAAAGCACGCAT 59.761 50.000 5.97 0.00 39.31 4.73
1531 1578 2.108075 TGGAATTGTCGGATGCCCATAT 59.892 45.455 0.00 0.00 0.00 1.78
1532 1579 1.492599 TGGAATTGTCGGATGCCCATA 59.507 47.619 0.00 0.00 0.00 2.74
1536 1583 2.325583 TACTGGAATTGTCGGATGCC 57.674 50.000 0.00 0.00 0.00 4.40
1550 1597 6.416750 CCAAAAAGTTTTAACGCTCTTACTGG 59.583 38.462 0.24 0.00 0.00 4.00
1952 2092 6.966435 AAACTATTCATGGCAAAATTTCCG 57.034 33.333 0.00 0.00 0.00 4.30
1961 2101 5.692115 TGGAGTCTAAACTATTCATGGCA 57.308 39.130 0.00 0.00 35.28 4.92
2064 2204 6.793680 CGTACTTAAAAGACCAATTTCCGAAC 59.206 38.462 0.00 0.00 0.00 3.95
2306 2589 6.615088 TGAAGTGAGCTTTGCAATATCTTTC 58.385 36.000 0.00 8.03 34.61 2.62
2354 2637 6.371595 AGAGAAATTCTCATCTGGTCTTGT 57.628 37.500 23.20 0.00 45.73 3.16
2536 2822 9.444600 GAAATGTCCTGGTTAAGAAGTACATAA 57.555 33.333 0.00 0.00 0.00 1.90
2750 3726 5.476254 TGACAAGTTGCATCAACCATAATGA 59.524 36.000 1.81 0.00 44.49 2.57
2897 3873 2.611292 GACTGCATCAGGAAGCACATAC 59.389 50.000 0.00 0.00 36.62 2.39
3089 4080 4.201871 GGAACGATGTGACACAAGAAAACA 60.202 41.667 13.23 0.00 0.00 2.83
3220 4212 4.304110 TCGATTCACAATATACCTTCCGC 58.696 43.478 0.00 0.00 0.00 5.54
3245 4241 0.887387 GGTAACCTGGAGCGTTTGCA 60.887 55.000 0.00 0.00 46.23 4.08
3510 4668 5.103290 TCGAGGGAGAAAAACAAAAATCG 57.897 39.130 0.00 0.00 0.00 3.34
3782 4940 3.866883 ACACAACAAAACAACCTCTGG 57.133 42.857 0.00 0.00 0.00 3.86
3784 4942 7.554835 TCTGTAATACACAACAAAACAACCTCT 59.445 33.333 0.00 0.00 36.48 3.69
3974 5132 6.932356 ATATGCTGGTTAGTTTGTCATCTG 57.068 37.500 0.00 0.00 0.00 2.90
4167 5325 4.501915 CCTGCACACATGTTCCAAAAATCT 60.502 41.667 0.00 0.00 0.00 2.40
4248 5406 8.630917 AGTATTATGCTAGACTATGTTTGTCGT 58.369 33.333 0.00 0.00 39.24 4.34
4277 5435 8.547894 GCTCATTTTGTTCCGAAACTTTAAAAT 58.452 29.630 0.00 0.00 36.30 1.82
4335 5493 9.400638 CGGTTTTTGTATCAGCACTTTTATTTA 57.599 29.630 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.