Multiple sequence alignment - TraesCS2B01G127100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G127100 chr2B 100.000 3395 0 0 1 3395 95242024 95238630 0.000000e+00 6270.0
1 TraesCS2B01G127100 chr2B 85.207 1521 186 17 965 2461 95536948 95535443 0.000000e+00 1526.0
2 TraesCS2B01G127100 chr2B 93.740 639 40 0 1241 1879 95495231 95494593 0.000000e+00 959.0
3 TraesCS2B01G127100 chr2B 87.327 797 73 16 2623 3395 272466647 272467439 0.000000e+00 887.0
4 TraesCS2B01G127100 chr2B 86.902 794 85 17 2463 3246 111373706 111374490 0.000000e+00 872.0
5 TraesCS2B01G127100 chr2B 87.248 745 82 11 2489 3223 506210549 506209808 0.000000e+00 837.0
6 TraesCS2B01G127100 chr2B 90.755 530 48 1 1874 2402 95489480 95488951 0.000000e+00 706.0
7 TraesCS2B01G127100 chr2B 90.179 224 20 2 984 1207 95501376 95501155 1.190000e-74 291.0
8 TraesCS2B01G127100 chr2B 93.913 115 7 0 206 320 95241722 95241608 1.250000e-39 174.0
9 TraesCS2B01G127100 chr2B 93.913 115 7 0 303 417 95241819 95241705 1.250000e-39 174.0
10 TraesCS2B01G127100 chr2B 95.918 49 2 0 1197 1245 95500991 95500943 2.810000e-11 80.5
11 TraesCS2B01G127100 chr2D 90.868 1752 134 13 723 2460 60769351 60767612 0.000000e+00 2326.0
12 TraesCS2B01G127100 chr2D 92.416 1279 93 3 965 2241 60780768 60779492 0.000000e+00 1821.0
13 TraesCS2B01G127100 chr2D 85.987 1520 179 15 965 2465 60785576 60784072 0.000000e+00 1596.0
14 TraesCS2B01G127100 chr2D 96.098 205 8 0 1 205 101695941 101695737 5.430000e-88 335.0
15 TraesCS2B01G127100 chr2D 94.712 208 10 1 1 207 567084774 567084567 4.230000e-84 322.0
16 TraesCS2B01G127100 chr2D 90.226 133 13 0 2242 2374 60777666 60777534 1.250000e-39 174.0
17 TraesCS2B01G127100 chr2D 95.122 82 4 0 381 462 60769431 60769350 2.750000e-26 130.0
18 TraesCS2B01G127100 chr2D 89.474 95 8 1 2373 2465 60777375 60777281 5.950000e-23 119.0
19 TraesCS2B01G127100 chr2A 91.050 1676 127 11 723 2388 61304378 61302716 0.000000e+00 2242.0
20 TraesCS2B01G127100 chr2A 93.268 1426 90 4 984 2409 61351187 61349768 0.000000e+00 2097.0
21 TraesCS2B01G127100 chr2A 85.801 824 94 12 1655 2465 61366258 61365445 0.000000e+00 852.0
22 TraesCS2B01G127100 chr2A 87.342 632 74 3 1000 1631 61367382 61366757 0.000000e+00 719.0
23 TraesCS2B01G127100 chr2A 83.654 208 18 8 723 917 61304450 61304246 7.480000e-42 182.0
24 TraesCS2B01G127100 chr2A 91.358 81 7 0 242 322 61304563 61304483 9.960000e-21 111.0
25 TraesCS2B01G127100 chr6B 88.384 947 94 14 2457 3395 54147329 54148267 0.000000e+00 1125.0
26 TraesCS2B01G127100 chr6B 87.469 814 87 14 2590 3395 708392332 708393138 0.000000e+00 924.0
27 TraesCS2B01G127100 chr6B 95.926 270 11 0 456 725 714079280 714079011 4.020000e-119 438.0
28 TraesCS2B01G127100 chr6B 96.226 265 10 0 461 725 309685934 309685670 5.200000e-118 435.0
29 TraesCS2B01G127100 chr5D 86.994 938 90 17 2486 3395 492070093 492069160 0.000000e+00 1027.0
30 TraesCS2B01G127100 chr5D 88.084 814 85 10 2590 3395 536866731 536867540 0.000000e+00 955.0
31 TraesCS2B01G127100 chr5D 88.535 785 76 12 2469 3246 105118080 105117303 0.000000e+00 939.0
32 TraesCS2B01G127100 chr5A 86.247 938 109 14 2465 3395 238467840 238466916 0.000000e+00 1000.0
33 TraesCS2B01G127100 chr5A 87.611 791 83 13 2463 3246 592523062 592523844 0.000000e+00 904.0
34 TraesCS2B01G127100 chr7D 89.053 813 77 11 2590 3395 586688166 586687359 0.000000e+00 998.0
35 TraesCS2B01G127100 chr7D 96.565 262 9 0 460 721 445953833 445954094 5.200000e-118 435.0
36 TraesCS2B01G127100 chr7D 95.169 207 10 0 1 207 579534693 579534899 9.080000e-86 327.0
37 TraesCS2B01G127100 chr5B 88.628 809 82 9 2590 3392 407242095 407242899 0.000000e+00 976.0
38 TraesCS2B01G127100 chr5B 98.120 266 5 0 461 726 508061714 508061979 6.640000e-127 464.0
39 TraesCS2B01G127100 chr3A 87.315 812 86 15 2593 3395 357059744 357058941 0.000000e+00 913.0
40 TraesCS2B01G127100 chr3A 86.995 792 84 16 2463 3246 569410400 569409620 0.000000e+00 874.0
41 TraesCS2B01G127100 chr3A 96.617 266 9 0 456 721 12408728 12408993 3.110000e-120 442.0
42 TraesCS2B01G127100 chr6D 87.406 802 87 12 2454 3246 424727198 424726402 0.000000e+00 909.0
43 TraesCS2B01G127100 chr3B 86.719 768 87 13 2489 3246 534986844 534986082 0.000000e+00 839.0
44 TraesCS2B01G127100 chr1B 96.337 273 10 0 457 729 505094208 505094480 1.860000e-122 449.0
45 TraesCS2B01G127100 chr1B 95.604 273 12 0 462 734 252161922 252161650 4.020000e-119 438.0
46 TraesCS2B01G127100 chr1B 95.911 269 11 0 460 728 58253325 58253057 1.450000e-118 436.0
47 TraesCS2B01G127100 chr7B 94.928 276 14 0 459 734 157482510 157482235 1.870000e-117 433.0
48 TraesCS2B01G127100 chr4D 96.098 205 8 0 1 205 482523943 482523739 5.430000e-88 335.0
49 TraesCS2B01G127100 chr4D 96.117 206 7 1 1 206 490861194 490861398 5.430000e-88 335.0
50 TraesCS2B01G127100 chr3D 95.610 205 9 0 1 205 16645093 16644889 2.530000e-86 329.0
51 TraesCS2B01G127100 chr3D 94.787 211 11 0 1 211 483197335 483197125 2.530000e-86 329.0
52 TraesCS2B01G127100 chr3D 80.970 268 40 9 3132 3395 614235799 614236059 5.740000e-48 202.0
53 TraesCS2B01G127100 chr7A 94.737 209 11 0 1 209 93443492 93443700 3.270000e-85 326.0
54 TraesCS2B01G127100 chr1A 94.313 211 11 1 1 210 564454482 564454272 4.230000e-84 322.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G127100 chr2B 95238630 95242024 3394 True 2206.0 6270 95.942000 1 3395 3 chr2B.!!$R5 3394
1 TraesCS2B01G127100 chr2B 95535443 95536948 1505 True 1526.0 1526 85.207000 965 2461 1 chr2B.!!$R3 1496
2 TraesCS2B01G127100 chr2B 95494593 95495231 638 True 959.0 959 93.740000 1241 1879 1 chr2B.!!$R2 638
3 TraesCS2B01G127100 chr2B 272466647 272467439 792 False 887.0 887 87.327000 2623 3395 1 chr2B.!!$F2 772
4 TraesCS2B01G127100 chr2B 111373706 111374490 784 False 872.0 872 86.902000 2463 3246 1 chr2B.!!$F1 783
5 TraesCS2B01G127100 chr2B 506209808 506210549 741 True 837.0 837 87.248000 2489 3223 1 chr2B.!!$R4 734
6 TraesCS2B01G127100 chr2B 95488951 95489480 529 True 706.0 706 90.755000 1874 2402 1 chr2B.!!$R1 528
7 TraesCS2B01G127100 chr2D 60767612 60769431 1819 True 1228.0 2326 92.995000 381 2460 2 chr2D.!!$R3 2079
8 TraesCS2B01G127100 chr2D 60777281 60785576 8295 True 927.5 1821 89.525750 965 2465 4 chr2D.!!$R4 1500
9 TraesCS2B01G127100 chr2A 61349768 61351187 1419 True 2097.0 2097 93.268000 984 2409 1 chr2A.!!$R1 1425
10 TraesCS2B01G127100 chr2A 61302716 61304563 1847 True 845.0 2242 88.687333 242 2388 3 chr2A.!!$R2 2146
11 TraesCS2B01G127100 chr2A 61365445 61367382 1937 True 785.5 852 86.571500 1000 2465 2 chr2A.!!$R3 1465
12 TraesCS2B01G127100 chr6B 54147329 54148267 938 False 1125.0 1125 88.384000 2457 3395 1 chr6B.!!$F1 938
13 TraesCS2B01G127100 chr6B 708392332 708393138 806 False 924.0 924 87.469000 2590 3395 1 chr6B.!!$F2 805
14 TraesCS2B01G127100 chr5D 492069160 492070093 933 True 1027.0 1027 86.994000 2486 3395 1 chr5D.!!$R2 909
15 TraesCS2B01G127100 chr5D 536866731 536867540 809 False 955.0 955 88.084000 2590 3395 1 chr5D.!!$F1 805
16 TraesCS2B01G127100 chr5D 105117303 105118080 777 True 939.0 939 88.535000 2469 3246 1 chr5D.!!$R1 777
17 TraesCS2B01G127100 chr5A 238466916 238467840 924 True 1000.0 1000 86.247000 2465 3395 1 chr5A.!!$R1 930
18 TraesCS2B01G127100 chr5A 592523062 592523844 782 False 904.0 904 87.611000 2463 3246 1 chr5A.!!$F1 783
19 TraesCS2B01G127100 chr7D 586687359 586688166 807 True 998.0 998 89.053000 2590 3395 1 chr7D.!!$R1 805
20 TraesCS2B01G127100 chr5B 407242095 407242899 804 False 976.0 976 88.628000 2590 3392 1 chr5B.!!$F1 802
21 TraesCS2B01G127100 chr3A 357058941 357059744 803 True 913.0 913 87.315000 2593 3395 1 chr3A.!!$R1 802
22 TraesCS2B01G127100 chr3A 569409620 569410400 780 True 874.0 874 86.995000 2463 3246 1 chr3A.!!$R2 783
23 TraesCS2B01G127100 chr6D 424726402 424727198 796 True 909.0 909 87.406000 2454 3246 1 chr6D.!!$R1 792
24 TraesCS2B01G127100 chr3B 534986082 534986844 762 True 839.0 839 86.719000 2489 3246 1 chr3B.!!$R1 757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
474 475 0.105453 ATGCGTACTCCCTCCATCCT 60.105 55.0 0.0 0.0 0.00 3.24 F
475 476 0.325296 TGCGTACTCCCTCCATCCTT 60.325 55.0 0.0 0.0 0.00 3.36 F
2226 7605 0.105964 AGTTGCTGTTCGTGGCAGTA 59.894 50.0 0.0 0.0 39.68 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2209 7588 0.941542 GTTACTGCCACGAACAGCAA 59.058 50.000 0.0 0.0 38.82 3.91 R
2241 7620 1.136446 ACGACGAAACAAGCGTAATGC 60.136 47.619 0.0 0.0 42.77 3.56 R
3113 10508 3.641437 TCATTTTAGCAGCGCTTGTTT 57.359 38.095 7.5 0.0 40.44 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 7.681939 AAAAGGAAAAACCAGAAAGGAAAAC 57.318 32.000 0.00 0.00 41.22 2.43
47 48 5.353394 AGGAAAAACCAGAAAGGAAAACC 57.647 39.130 0.00 0.00 41.22 3.27
48 49 4.116961 GGAAAAACCAGAAAGGAAAACCG 58.883 43.478 0.00 0.00 41.22 4.44
49 50 3.812156 AAAACCAGAAAGGAAAACCGG 57.188 42.857 0.00 0.00 41.22 5.28
50 51 2.740506 AACCAGAAAGGAAAACCGGA 57.259 45.000 9.46 0.00 41.22 5.14
51 52 2.740506 ACCAGAAAGGAAAACCGGAA 57.259 45.000 9.46 0.00 41.22 4.30
52 53 3.021177 ACCAGAAAGGAAAACCGGAAA 57.979 42.857 9.46 0.00 41.22 3.13
53 54 2.691526 ACCAGAAAGGAAAACCGGAAAC 59.308 45.455 9.46 0.00 41.22 2.78
54 55 2.035449 CCAGAAAGGAAAACCGGAAACC 59.965 50.000 9.46 6.01 41.22 3.27
55 56 5.396328 CCAGAAAGGAAAACCGGAAACCG 62.396 52.174 9.46 3.03 43.49 4.44
89 90 4.354212 CCGTGCGTGCGACAAGTG 62.354 66.667 0.00 0.00 0.00 3.16
90 91 3.626244 CGTGCGTGCGACAAGTGT 61.626 61.111 0.00 0.00 0.00 3.55
91 92 2.245532 GTGCGTGCGACAAGTGTC 59.754 61.111 1.12 1.12 41.47 3.67
114 115 3.768632 CGGAGCGTCTCGGAAAAG 58.231 61.111 8.13 0.00 33.52 2.27
115 116 1.080705 CGGAGCGTCTCGGAAAAGT 60.081 57.895 8.13 0.00 33.52 2.66
116 117 1.071567 CGGAGCGTCTCGGAAAAGTC 61.072 60.000 8.13 0.00 33.52 3.01
117 118 0.244178 GGAGCGTCTCGGAAAAGTCT 59.756 55.000 1.64 0.00 0.00 3.24
118 119 1.619983 GAGCGTCTCGGAAAAGTCTC 58.380 55.000 0.00 0.00 0.00 3.36
119 120 0.244178 AGCGTCTCGGAAAAGTCTCC 59.756 55.000 0.00 0.00 0.00 3.71
120 121 0.736672 GCGTCTCGGAAAAGTCTCCC 60.737 60.000 0.00 0.00 31.03 4.30
121 122 0.456312 CGTCTCGGAAAAGTCTCCCG 60.456 60.000 0.00 0.00 44.22 5.14
123 124 0.886563 TCTCGGAAAAGTCTCCCGAC 59.113 55.000 0.00 0.00 46.17 4.79
124 125 0.108756 CTCGGAAAAGTCTCCCGACC 60.109 60.000 0.00 0.00 46.17 4.79
125 126 1.445582 CGGAAAAGTCTCCCGACCG 60.446 63.158 0.00 0.00 45.58 4.79
126 127 1.740664 GGAAAAGTCTCCCGACCGC 60.741 63.158 0.00 0.00 41.16 5.68
127 128 1.292541 GAAAAGTCTCCCGACCGCT 59.707 57.895 0.00 0.00 41.16 5.52
128 129 0.736672 GAAAAGTCTCCCGACCGCTC 60.737 60.000 0.00 0.00 41.16 5.03
129 130 2.168666 AAAAGTCTCCCGACCGCTCC 62.169 60.000 0.00 0.00 41.16 4.70
143 144 3.767230 CTCCGCGCGTGACACTTG 61.767 66.667 29.95 10.76 0.00 3.16
151 152 4.012895 GTGACACTTGGCACGCGG 62.013 66.667 12.47 0.00 45.07 6.46
169 170 3.291611 GGAGCGTTCCCCGACTAA 58.708 61.111 7.13 0.00 39.56 2.24
170 171 1.821258 GGAGCGTTCCCCGACTAAT 59.179 57.895 7.13 0.00 39.56 1.73
171 172 0.249363 GGAGCGTTCCCCGACTAATC 60.249 60.000 7.13 0.00 39.56 1.75
172 173 3.856213 GGAGCGTTCCCCGACTAATCG 62.856 61.905 7.13 0.00 39.92 3.34
181 182 3.616935 CGACTAATCGTTGCGAGGA 57.383 52.632 0.00 0.00 43.66 3.71
182 183 1.467875 CGACTAATCGTTGCGAGGAG 58.532 55.000 2.32 0.00 43.66 3.69
183 184 2.441780 CGACTAATCGTTGCGAGGAGC 61.442 57.143 2.32 0.00 43.66 4.70
198 199 1.576356 GGAGCGCTCCTCAATTAGTG 58.424 55.000 42.50 0.00 46.16 2.74
199 200 1.137086 GGAGCGCTCCTCAATTAGTGA 59.863 52.381 42.50 0.00 46.16 3.41
200 201 2.224161 GGAGCGCTCCTCAATTAGTGAT 60.224 50.000 42.50 1.02 46.16 3.06
201 202 3.462021 GAGCGCTCCTCAATTAGTGATT 58.538 45.455 27.22 0.00 40.45 2.57
202 203 3.873952 GAGCGCTCCTCAATTAGTGATTT 59.126 43.478 27.22 0.00 40.45 2.17
203 204 3.873952 AGCGCTCCTCAATTAGTGATTTC 59.126 43.478 2.64 0.00 35.07 2.17
204 205 3.302740 GCGCTCCTCAATTAGTGATTTCG 60.303 47.826 0.00 0.00 35.07 3.46
205 206 3.302740 CGCTCCTCAATTAGTGATTTCGC 60.303 47.826 0.00 0.00 35.07 4.70
206 207 3.873952 GCTCCTCAATTAGTGATTTCGCT 59.126 43.478 0.00 0.00 40.27 4.93
207 208 5.050490 GCTCCTCAATTAGTGATTTCGCTA 58.950 41.667 0.00 0.00 37.87 4.26
208 209 5.698545 GCTCCTCAATTAGTGATTTCGCTAT 59.301 40.000 1.93 0.00 38.57 2.97
209 210 6.128688 GCTCCTCAATTAGTGATTTCGCTATC 60.129 42.308 1.93 0.00 38.57 2.08
210 211 7.055667 TCCTCAATTAGTGATTTCGCTATCT 57.944 36.000 1.93 0.00 38.57 1.98
211 212 8.178313 TCCTCAATTAGTGATTTCGCTATCTA 57.822 34.615 1.93 0.00 38.57 1.98
212 213 8.082852 TCCTCAATTAGTGATTTCGCTATCTAC 58.917 37.037 1.93 0.00 38.57 2.59
213 214 8.085296 CCTCAATTAGTGATTTCGCTATCTACT 58.915 37.037 1.93 0.00 38.57 2.57
215 216 9.894783 TCAATTAGTGATTTCGCTATCTACTAC 57.105 33.333 1.93 0.00 38.57 2.73
216 217 9.900710 CAATTAGTGATTTCGCTATCTACTACT 57.099 33.333 1.93 0.00 38.57 2.57
218 219 6.563222 AGTGATTTCGCTATCTACTACTCC 57.437 41.667 0.00 0.00 34.49 3.85
219 220 6.062749 AGTGATTTCGCTATCTACTACTCCA 58.937 40.000 0.00 0.00 34.49 3.86
220 221 6.546403 AGTGATTTCGCTATCTACTACTCCAA 59.454 38.462 0.00 0.00 34.49 3.53
221 222 6.858993 GTGATTTCGCTATCTACTACTCCAAG 59.141 42.308 0.00 0.00 0.00 3.61
222 223 6.546403 TGATTTCGCTATCTACTACTCCAAGT 59.454 38.462 0.00 0.00 0.00 3.16
223 224 6.374565 TTTCGCTATCTACTACTCCAAGTC 57.625 41.667 0.00 0.00 0.00 3.01
224 225 4.056740 TCGCTATCTACTACTCCAAGTCG 58.943 47.826 0.00 0.00 0.00 4.18
225 226 3.808726 CGCTATCTACTACTCCAAGTCGT 59.191 47.826 0.00 0.00 0.00 4.34
226 227 4.987285 CGCTATCTACTACTCCAAGTCGTA 59.013 45.833 0.00 0.00 0.00 3.43
227 228 5.638657 CGCTATCTACTACTCCAAGTCGTAT 59.361 44.000 0.00 0.00 28.03 3.06
228 229 6.183360 CGCTATCTACTACTCCAAGTCGTATC 60.183 46.154 0.00 0.00 28.03 2.24
229 230 6.875195 GCTATCTACTACTCCAAGTCGTATCT 59.125 42.308 0.00 0.00 28.03 1.98
230 231 8.034215 GCTATCTACTACTCCAAGTCGTATCTA 58.966 40.741 0.00 0.00 28.03 1.98
237 238 9.874205 ACTACTCCAAGTCGTATCTATATACTC 57.126 37.037 0.00 0.00 36.58 2.59
239 240 8.780846 ACTCCAAGTCGTATCTATATACTCTG 57.219 38.462 0.00 0.00 36.58 3.35
240 241 8.595421 ACTCCAAGTCGTATCTATATACTCTGA 58.405 37.037 0.00 0.00 36.58 3.27
299 300 4.689812 GCATCTTCTGAGATAATGATGCGT 59.310 41.667 17.46 0.00 44.28 5.24
300 301 5.866092 GCATCTTCTGAGATAATGATGCGTA 59.134 40.000 17.46 0.00 44.28 4.42
301 302 6.534436 GCATCTTCTGAGATAATGATGCGTAT 59.466 38.462 17.46 0.00 44.28 3.06
302 303 7.254050 GCATCTTCTGAGATAATGATGCGTATC 60.254 40.741 17.46 6.54 44.28 2.24
303 304 7.459795 TCTTCTGAGATAATGATGCGTATCT 57.540 36.000 14.76 3.00 39.30 1.98
304 305 8.567285 TCTTCTGAGATAATGATGCGTATCTA 57.433 34.615 14.76 0.14 37.23 1.98
305 306 9.183368 TCTTCTGAGATAATGATGCGTATCTAT 57.817 33.333 14.76 5.14 37.23 1.98
306 307 9.449550 CTTCTGAGATAATGATGCGTATCTATC 57.550 37.037 14.76 13.21 37.23 2.08
307 308 8.744568 TCTGAGATAATGATGCGTATCTATCT 57.255 34.615 18.73 18.73 37.23 1.98
308 309 9.838339 TCTGAGATAATGATGCGTATCTATCTA 57.162 33.333 18.71 7.16 37.23 1.98
309 310 9.877137 CTGAGATAATGATGCGTATCTATCTAC 57.123 37.037 18.71 14.36 37.23 2.59
310 311 9.620259 TGAGATAATGATGCGTATCTATCTACT 57.380 33.333 18.71 10.47 37.23 2.57
316 317 9.668497 AATGATGCGTATCTATCTACTACTACA 57.332 33.333 14.76 0.00 34.31 2.74
317 318 9.668497 ATGATGCGTATCTATCTACTACTACAA 57.332 33.333 14.76 0.00 34.31 2.41
318 319 9.152595 TGATGCGTATCTATCTACTACTACAAG 57.847 37.037 14.76 0.00 34.31 3.16
319 320 9.153721 GATGCGTATCTATCTACTACTACAAGT 57.846 37.037 6.21 0.00 0.00 3.16
320 321 8.531622 TGCGTATCTATCTACTACTACAAGTC 57.468 38.462 0.00 0.00 0.00 3.01
321 322 7.328005 TGCGTATCTATCTACTACTACAAGTCG 59.672 40.741 0.00 0.00 0.00 4.18
322 323 7.328249 GCGTATCTATCTACTACTACAAGTCGT 59.672 40.741 0.00 0.00 0.00 4.34
323 324 9.833182 CGTATCTATCTACTACTACAAGTCGTA 57.167 37.037 0.00 0.00 0.00 3.43
340 341 9.781633 ACAAGTCGTATCTATATACTCTGAAGT 57.218 33.333 0.00 0.00 36.58 3.01
353 354 7.759489 ATACTCTGAAGTACAAATTTTGGCA 57.241 32.000 13.42 0.00 40.74 4.92
354 355 6.076981 ACTCTGAAGTACAAATTTTGGCAG 57.923 37.500 13.42 11.20 32.59 4.85
355 356 5.827797 ACTCTGAAGTACAAATTTTGGCAGA 59.172 36.000 13.42 13.98 32.59 4.26
356 357 6.321181 ACTCTGAAGTACAAATTTTGGCAGAA 59.679 34.615 13.42 0.00 32.59 3.02
357 358 6.738114 TCTGAAGTACAAATTTTGGCAGAAG 58.262 36.000 13.42 4.44 34.12 2.85
358 359 5.288804 TGAAGTACAAATTTTGGCAGAAGC 58.711 37.500 13.42 0.00 41.10 3.86
359 360 4.935352 AGTACAAATTTTGGCAGAAGCA 57.065 36.364 13.42 0.00 44.61 3.91
360 361 5.275067 AGTACAAATTTTGGCAGAAGCAA 57.725 34.783 13.42 0.00 44.61 3.91
361 362 5.857268 AGTACAAATTTTGGCAGAAGCAAT 58.143 33.333 13.42 0.00 44.61 3.56
362 363 6.991938 AGTACAAATTTTGGCAGAAGCAATA 58.008 32.000 13.42 0.00 44.61 1.90
363 364 7.614494 AGTACAAATTTTGGCAGAAGCAATAT 58.386 30.769 13.42 0.00 44.61 1.28
364 365 8.096414 AGTACAAATTTTGGCAGAAGCAATATT 58.904 29.630 13.42 0.00 44.61 1.28
365 366 7.748691 ACAAATTTTGGCAGAAGCAATATTT 57.251 28.000 13.42 0.00 44.61 1.40
366 367 7.809665 ACAAATTTTGGCAGAAGCAATATTTC 58.190 30.769 13.42 0.00 44.61 2.17
367 368 7.444792 ACAAATTTTGGCAGAAGCAATATTTCA 59.555 29.630 13.42 0.00 44.61 2.69
368 369 6.973229 ATTTTGGCAGAAGCAATATTTCAC 57.027 33.333 0.00 0.00 44.61 3.18
369 370 5.465532 TTTGGCAGAAGCAATATTTCACA 57.534 34.783 0.00 0.00 44.61 3.58
370 371 5.664294 TTGGCAGAAGCAATATTTCACAT 57.336 34.783 0.00 0.00 44.61 3.21
371 372 5.252969 TGGCAGAAGCAATATTTCACATC 57.747 39.130 0.00 0.00 44.61 3.06
372 373 4.098349 TGGCAGAAGCAATATTTCACATCC 59.902 41.667 0.00 0.00 44.61 3.51
373 374 4.098349 GGCAGAAGCAATATTTCACATCCA 59.902 41.667 0.00 0.00 44.61 3.41
374 375 5.039333 GCAGAAGCAATATTTCACATCCAC 58.961 41.667 0.00 0.00 41.58 4.02
375 376 5.393352 GCAGAAGCAATATTTCACATCCACA 60.393 40.000 0.00 0.00 41.58 4.17
376 377 6.682113 GCAGAAGCAATATTTCACATCCACAT 60.682 38.462 0.00 0.00 41.58 3.21
377 378 6.916387 CAGAAGCAATATTTCACATCCACATC 59.084 38.462 0.00 0.00 0.00 3.06
378 379 6.832384 AGAAGCAATATTTCACATCCACATCT 59.168 34.615 0.00 0.00 0.00 2.90
379 380 7.341256 AGAAGCAATATTTCACATCCACATCTT 59.659 33.333 0.00 0.00 0.00 2.40
395 396 6.042897 TCCACATCTTCTGAGATAATGATGCT 59.957 38.462 10.44 0.00 40.67 3.79
440 441 8.749354 AGTGGAGGATTATTGTTTTCATAAACC 58.251 33.333 0.00 0.00 42.39 3.27
460 461 9.890629 ATAAACCAGATACATTATATGATGCGT 57.109 29.630 7.36 0.00 29.09 5.24
462 463 8.703604 AACCAGATACATTATATGATGCGTAC 57.296 34.615 7.36 0.00 29.09 3.67
463 464 8.067751 ACCAGATACATTATATGATGCGTACT 57.932 34.615 7.36 0.64 29.09 2.73
464 465 8.191446 ACCAGATACATTATATGATGCGTACTC 58.809 37.037 7.36 0.00 29.09 2.59
465 466 7.649705 CCAGATACATTATATGATGCGTACTCC 59.350 40.741 7.36 0.00 29.09 3.85
466 467 7.649705 CAGATACATTATATGATGCGTACTCCC 59.350 40.741 7.36 0.00 29.09 4.30
467 468 7.561722 AGATACATTATATGATGCGTACTCCCT 59.438 37.037 7.36 0.00 0.00 4.20
468 469 5.967088 ACATTATATGATGCGTACTCCCTC 58.033 41.667 7.36 0.00 0.00 4.30
469 470 5.105310 ACATTATATGATGCGTACTCCCTCC 60.105 44.000 7.36 0.00 0.00 4.30
470 471 2.375014 TATGATGCGTACTCCCTCCA 57.625 50.000 0.00 0.00 0.00 3.86
471 472 1.722034 ATGATGCGTACTCCCTCCAT 58.278 50.000 0.00 0.00 0.00 3.41
472 473 1.040646 TGATGCGTACTCCCTCCATC 58.959 55.000 0.00 0.00 34.41 3.51
473 474 0.318762 GATGCGTACTCCCTCCATCC 59.681 60.000 0.00 0.00 0.00 3.51
474 475 0.105453 ATGCGTACTCCCTCCATCCT 60.105 55.000 0.00 0.00 0.00 3.24
475 476 0.325296 TGCGTACTCCCTCCATCCTT 60.325 55.000 0.00 0.00 0.00 3.36
476 477 0.831307 GCGTACTCCCTCCATCCTTT 59.169 55.000 0.00 0.00 0.00 3.11
477 478 1.473434 GCGTACTCCCTCCATCCTTTG 60.473 57.143 0.00 0.00 0.00 2.77
478 479 2.108168 CGTACTCCCTCCATCCTTTGA 58.892 52.381 0.00 0.00 0.00 2.69
479 480 2.500098 CGTACTCCCTCCATCCTTTGAA 59.500 50.000 0.00 0.00 0.00 2.69
480 481 3.430929 CGTACTCCCTCCATCCTTTGAAG 60.431 52.174 0.00 0.00 0.00 3.02
481 482 2.921221 ACTCCCTCCATCCTTTGAAGA 58.079 47.619 0.00 0.00 0.00 2.87
482 483 2.843113 ACTCCCTCCATCCTTTGAAGAG 59.157 50.000 0.00 0.00 0.00 2.85
483 484 2.843113 CTCCCTCCATCCTTTGAAGAGT 59.157 50.000 0.00 0.00 0.00 3.24
484 485 2.573462 TCCCTCCATCCTTTGAAGAGTG 59.427 50.000 0.00 0.00 0.00 3.51
485 486 2.307098 CCCTCCATCCTTTGAAGAGTGT 59.693 50.000 0.00 0.00 0.00 3.55
486 487 3.519510 CCCTCCATCCTTTGAAGAGTGTA 59.480 47.826 0.00 0.00 0.00 2.90
487 488 4.508662 CCTCCATCCTTTGAAGAGTGTAC 58.491 47.826 0.00 0.00 0.00 2.90
488 489 4.223923 CCTCCATCCTTTGAAGAGTGTACT 59.776 45.833 0.00 0.00 0.00 2.73
489 490 5.280215 CCTCCATCCTTTGAAGAGTGTACTT 60.280 44.000 0.00 0.00 0.00 2.24
490 491 5.794894 TCCATCCTTTGAAGAGTGTACTTC 58.205 41.667 0.00 0.00 44.31 3.01
491 492 4.938226 CCATCCTTTGAAGAGTGTACTTCC 59.062 45.833 0.00 0.00 43.67 3.46
492 493 5.513094 CCATCCTTTGAAGAGTGTACTTCCA 60.513 44.000 0.00 0.00 43.67 3.53
493 494 5.623956 TCCTTTGAAGAGTGTACTTCCAA 57.376 39.130 0.00 0.00 43.67 3.53
494 495 5.365619 TCCTTTGAAGAGTGTACTTCCAAC 58.634 41.667 0.00 0.00 43.67 3.77
495 496 5.130477 TCCTTTGAAGAGTGTACTTCCAACT 59.870 40.000 0.00 0.00 43.67 3.16
496 497 5.823045 CCTTTGAAGAGTGTACTTCCAACTT 59.177 40.000 0.00 0.00 43.67 2.66
497 498 6.318900 CCTTTGAAGAGTGTACTTCCAACTTT 59.681 38.462 0.00 0.00 43.67 2.66
498 499 6.677781 TTGAAGAGTGTACTTCCAACTTTG 57.322 37.500 0.00 0.00 43.67 2.77
499 500 5.741011 TGAAGAGTGTACTTCCAACTTTGT 58.259 37.500 0.00 0.00 43.67 2.83
500 501 6.177610 TGAAGAGTGTACTTCCAACTTTGTT 58.822 36.000 0.00 0.00 43.67 2.83
501 502 6.093495 TGAAGAGTGTACTTCCAACTTTGTTG 59.907 38.462 0.00 3.69 43.67 3.33
502 503 5.741011 AGAGTGTACTTCCAACTTTGTTGA 58.259 37.500 11.47 0.00 0.00 3.18
503 504 6.177610 AGAGTGTACTTCCAACTTTGTTGAA 58.822 36.000 11.47 4.30 0.00 2.69
504 505 6.657541 AGAGTGTACTTCCAACTTTGTTGAAA 59.342 34.615 11.47 0.00 0.00 2.69
505 506 7.175990 AGAGTGTACTTCCAACTTTGTTGAAAA 59.824 33.333 11.47 5.40 0.00 2.29
506 507 7.312899 AGTGTACTTCCAACTTTGTTGAAAAG 58.687 34.615 11.47 14.52 0.00 2.27
507 508 7.039993 AGTGTACTTCCAACTTTGTTGAAAAGT 60.040 33.333 22.04 22.04 41.82 2.66
509 510 8.794553 TGTACTTCCAACTTTGTTGAAAAGTTA 58.205 29.630 22.82 15.52 45.57 2.24
510 511 9.628746 GTACTTCCAACTTTGTTGAAAAGTTAA 57.371 29.630 22.82 7.13 45.57 2.01
512 513 8.984764 ACTTCCAACTTTGTTGAAAAGTTAAAC 58.015 29.630 14.04 0.00 45.57 2.01
513 514 9.203421 CTTCCAACTTTGTTGAAAAGTTAAACT 57.797 29.630 14.04 0.00 45.57 2.66
514 515 9.549078 TTCCAACTTTGTTGAAAAGTTAAACTT 57.451 25.926 14.04 0.00 45.57 2.66
546 547 9.938670 TGTTTGACCGTATTTATACAATAATGC 57.061 29.630 1.26 0.00 32.87 3.56
547 548 9.938670 GTTTGACCGTATTTATACAATAATGCA 57.061 29.630 0.00 0.00 32.87 3.96
548 549 9.938670 TTTGACCGTATTTATACAATAATGCAC 57.061 29.630 0.00 0.00 32.87 4.57
549 550 8.090250 TGACCGTATTTATACAATAATGCACC 57.910 34.615 0.00 0.00 32.87 5.01
550 551 7.715686 TGACCGTATTTATACAATAATGCACCA 59.284 33.333 0.00 0.00 32.87 4.17
551 552 8.453238 ACCGTATTTATACAATAATGCACCAA 57.547 30.769 0.00 0.00 32.87 3.67
552 553 8.347035 ACCGTATTTATACAATAATGCACCAAC 58.653 33.333 0.00 0.00 32.87 3.77
553 554 8.346300 CCGTATTTATACAATAATGCACCAACA 58.654 33.333 0.00 0.00 32.87 3.33
554 555 9.891828 CGTATTTATACAATAATGCACCAACAT 57.108 29.630 0.00 0.00 32.87 2.71
560 561 6.907206 ACAATAATGCACCAACATTTATGC 57.093 33.333 0.00 0.00 40.64 3.14
561 562 5.816777 ACAATAATGCACCAACATTTATGCC 59.183 36.000 0.00 0.00 40.64 4.40
562 563 3.977134 AATGCACCAACATTTATGCCA 57.023 38.095 0.00 0.00 36.91 4.92
563 564 4.490899 AATGCACCAACATTTATGCCAT 57.509 36.364 0.00 0.00 36.91 4.40
564 565 3.523606 TGCACCAACATTTATGCCATC 57.476 42.857 0.00 0.00 37.26 3.51
565 566 2.830321 TGCACCAACATTTATGCCATCA 59.170 40.909 0.00 0.00 37.26 3.07
566 567 3.260128 TGCACCAACATTTATGCCATCAA 59.740 39.130 0.00 0.00 37.26 2.57
567 568 3.866910 GCACCAACATTTATGCCATCAAG 59.133 43.478 0.00 0.00 31.71 3.02
568 569 4.621274 GCACCAACATTTATGCCATCAAGT 60.621 41.667 0.00 0.00 31.71 3.16
569 570 5.481105 CACCAACATTTATGCCATCAAGTT 58.519 37.500 0.00 0.00 0.00 2.66
570 571 6.629128 CACCAACATTTATGCCATCAAGTTA 58.371 36.000 0.00 0.00 0.00 2.24
571 572 6.753279 CACCAACATTTATGCCATCAAGTTAG 59.247 38.462 0.00 0.00 0.00 2.34
572 573 6.437162 ACCAACATTTATGCCATCAAGTTAGT 59.563 34.615 0.00 0.00 0.00 2.24
573 574 7.613801 ACCAACATTTATGCCATCAAGTTAGTA 59.386 33.333 0.00 0.00 0.00 1.82
574 575 8.131100 CCAACATTTATGCCATCAAGTTAGTAG 58.869 37.037 0.00 0.00 0.00 2.57
575 576 7.264373 ACATTTATGCCATCAAGTTAGTAGC 57.736 36.000 0.00 0.00 0.00 3.58
576 577 6.828273 ACATTTATGCCATCAAGTTAGTAGCA 59.172 34.615 0.00 0.00 0.00 3.49
577 578 7.503566 ACATTTATGCCATCAAGTTAGTAGCAT 59.496 33.333 0.00 0.00 41.89 3.79
578 579 7.880160 TTTATGCCATCAAGTTAGTAGCATT 57.120 32.000 0.00 0.00 39.89 3.56
579 580 8.972458 TTTATGCCATCAAGTTAGTAGCATTA 57.028 30.769 0.00 0.00 39.89 1.90
580 581 8.607441 TTATGCCATCAAGTTAGTAGCATTAG 57.393 34.615 0.00 0.00 39.89 1.73
581 582 6.233905 TGCCATCAAGTTAGTAGCATTAGA 57.766 37.500 0.00 0.00 0.00 2.10
582 583 6.830912 TGCCATCAAGTTAGTAGCATTAGAT 58.169 36.000 0.00 0.00 0.00 1.98
583 584 7.282585 TGCCATCAAGTTAGTAGCATTAGATT 58.717 34.615 0.00 0.00 0.00 2.40
584 585 7.442364 TGCCATCAAGTTAGTAGCATTAGATTC 59.558 37.037 0.00 0.00 0.00 2.52
585 586 7.442364 GCCATCAAGTTAGTAGCATTAGATTCA 59.558 37.037 0.00 0.00 0.00 2.57
586 587 9.499479 CCATCAAGTTAGTAGCATTAGATTCAT 57.501 33.333 0.00 0.00 0.00 2.57
654 655 9.075519 ACATTGATATATTTTTGCACAAACTCG 57.924 29.630 0.00 0.00 0.00 4.18
655 656 8.533965 CATTGATATATTTTTGCACAAACTCGG 58.466 33.333 0.00 0.00 0.00 4.63
656 657 7.151999 TGATATATTTTTGCACAAACTCGGT 57.848 32.000 0.00 0.00 0.00 4.69
657 658 7.247728 TGATATATTTTTGCACAAACTCGGTC 58.752 34.615 0.00 0.00 0.00 4.79
658 659 3.791973 ATTTTTGCACAAACTCGGTCA 57.208 38.095 0.00 0.00 0.00 4.02
659 660 3.577649 TTTTTGCACAAACTCGGTCAA 57.422 38.095 0.00 0.00 0.00 3.18
660 661 3.577649 TTTTGCACAAACTCGGTCAAA 57.422 38.095 0.00 0.00 0.00 2.69
661 662 2.553079 TTGCACAAACTCGGTCAAAC 57.447 45.000 0.00 0.00 0.00 2.93
662 663 1.454201 TGCACAAACTCGGTCAAACA 58.546 45.000 0.00 0.00 0.00 2.83
663 664 2.020720 TGCACAAACTCGGTCAAACAT 58.979 42.857 0.00 0.00 0.00 2.71
664 665 2.425312 TGCACAAACTCGGTCAAACATT 59.575 40.909 0.00 0.00 0.00 2.71
665 666 2.788786 GCACAAACTCGGTCAAACATTG 59.211 45.455 0.00 0.00 0.00 2.82
666 667 3.488384 GCACAAACTCGGTCAAACATTGA 60.488 43.478 0.00 0.00 37.33 2.57
667 668 4.282068 CACAAACTCGGTCAAACATTGAG 58.718 43.478 0.00 0.00 41.01 3.02
668 669 4.035091 CACAAACTCGGTCAAACATTGAGA 59.965 41.667 0.00 0.00 41.01 3.27
669 670 4.821805 ACAAACTCGGTCAAACATTGAGAT 59.178 37.500 0.00 0.00 41.01 2.75
670 671 5.995282 ACAAACTCGGTCAAACATTGAGATA 59.005 36.000 0.00 0.00 41.01 1.98
671 672 6.147821 ACAAACTCGGTCAAACATTGAGATAG 59.852 38.462 0.00 0.00 41.01 2.08
672 673 5.407407 ACTCGGTCAAACATTGAGATAGT 57.593 39.130 0.00 0.00 41.01 2.12
673 674 5.794894 ACTCGGTCAAACATTGAGATAGTT 58.205 37.500 0.00 0.00 41.01 2.24
674 675 6.231211 ACTCGGTCAAACATTGAGATAGTTT 58.769 36.000 0.00 0.00 41.01 2.66
682 683 5.104259 ACATTGAGATAGTTTGACCCTCC 57.896 43.478 0.00 0.00 0.00 4.30
683 684 4.536090 ACATTGAGATAGTTTGACCCTCCA 59.464 41.667 0.00 0.00 0.00 3.86
684 685 5.014123 ACATTGAGATAGTTTGACCCTCCAA 59.986 40.000 0.00 0.00 0.00 3.53
685 686 4.553330 TGAGATAGTTTGACCCTCCAAC 57.447 45.455 0.00 0.00 0.00 3.77
686 687 3.907474 TGAGATAGTTTGACCCTCCAACA 59.093 43.478 0.00 0.00 0.00 3.33
687 688 4.349636 TGAGATAGTTTGACCCTCCAACAA 59.650 41.667 0.00 0.00 0.00 2.83
688 689 5.163141 TGAGATAGTTTGACCCTCCAACAAA 60.163 40.000 0.00 0.00 0.00 2.83
689 690 5.316987 AGATAGTTTGACCCTCCAACAAAG 58.683 41.667 0.00 0.00 34.86 2.77
690 691 3.382083 AGTTTGACCCTCCAACAAAGT 57.618 42.857 0.00 0.00 34.86 2.66
691 692 3.708451 AGTTTGACCCTCCAACAAAGTT 58.292 40.909 0.00 0.00 34.79 2.66
692 693 3.447229 AGTTTGACCCTCCAACAAAGTTG 59.553 43.478 3.00 3.00 34.79 3.16
693 694 2.065899 TGACCCTCCAACAAAGTTGG 57.934 50.000 20.09 20.09 40.87 3.77
694 695 1.566703 TGACCCTCCAACAAAGTTGGA 59.433 47.619 25.17 25.17 45.61 3.53
695 696 2.024846 TGACCCTCCAACAAAGTTGGAA 60.025 45.455 26.25 12.88 46.85 3.53
696 697 2.623416 GACCCTCCAACAAAGTTGGAAG 59.377 50.000 26.25 21.51 46.85 3.46
697 698 2.024369 ACCCTCCAACAAAGTTGGAAGT 60.024 45.455 26.25 22.95 46.85 3.01
698 699 3.203487 ACCCTCCAACAAAGTTGGAAGTA 59.797 43.478 26.25 9.67 46.85 2.24
699 700 3.568430 CCCTCCAACAAAGTTGGAAGTAC 59.432 47.826 26.25 0.00 46.85 2.73
700 701 4.204012 CCTCCAACAAAGTTGGAAGTACA 58.796 43.478 26.25 8.75 46.85 2.90
701 702 4.036380 CCTCCAACAAAGTTGGAAGTACAC 59.964 45.833 26.25 0.00 46.85 2.90
702 703 4.850680 TCCAACAAAGTTGGAAGTACACT 58.149 39.130 24.83 0.00 44.90 3.55
703 704 4.879545 TCCAACAAAGTTGGAAGTACACTC 59.120 41.667 24.83 0.00 44.90 3.51
704 705 4.881850 CCAACAAAGTTGGAAGTACACTCT 59.118 41.667 21.24 0.00 42.06 3.24
705 706 5.357032 CCAACAAAGTTGGAAGTACACTCTT 59.643 40.000 21.24 0.00 42.06 2.85
706 707 6.127730 CCAACAAAGTTGGAAGTACACTCTTT 60.128 38.462 21.24 0.00 42.06 2.52
707 708 7.066525 CCAACAAAGTTGGAAGTACACTCTTTA 59.933 37.037 21.24 0.00 42.06 1.85
708 709 8.455682 CAACAAAGTTGGAAGTACACTCTTTAA 58.544 33.333 2.05 0.00 0.00 1.52
709 710 8.570068 ACAAAGTTGGAAGTACACTCTTTAAA 57.430 30.769 0.00 0.00 0.00 1.52
710 711 8.674607 ACAAAGTTGGAAGTACACTCTTTAAAG 58.325 33.333 9.04 9.04 0.00 1.85
711 712 7.803279 AAGTTGGAAGTACACTCTTTAAAGG 57.197 36.000 15.13 8.48 0.00 3.11
712 713 7.133133 AGTTGGAAGTACACTCTTTAAAGGA 57.867 36.000 15.13 1.82 0.00 3.36
713 714 6.990939 AGTTGGAAGTACACTCTTTAAAGGAC 59.009 38.462 15.13 6.27 0.00 3.85
714 715 5.535333 TGGAAGTACACTCTTTAAAGGACG 58.465 41.667 15.13 6.90 0.00 4.79
715 716 4.928020 GGAAGTACACTCTTTAAAGGACGG 59.072 45.833 15.13 5.64 0.00 4.79
716 717 5.279156 GGAAGTACACTCTTTAAAGGACGGA 60.279 44.000 15.13 0.00 0.00 4.69
717 718 5.388408 AGTACACTCTTTAAAGGACGGAG 57.612 43.478 15.13 7.51 0.00 4.63
718 719 3.679824 ACACTCTTTAAAGGACGGAGG 57.320 47.619 15.13 2.85 0.00 4.30
719 720 2.302157 ACACTCTTTAAAGGACGGAGGG 59.698 50.000 15.13 8.51 34.07 4.30
720 721 2.565834 CACTCTTTAAAGGACGGAGGGA 59.434 50.000 15.13 0.00 29.82 4.20
721 722 3.007614 CACTCTTTAAAGGACGGAGGGAA 59.992 47.826 15.13 0.00 29.82 3.97
784 860 9.685276 TGATAAACCAGAGACATTAAATGATGT 57.315 29.630 0.00 0.00 42.68 3.06
871 947 9.179909 CGTATCTATCTACTACTCCAATCCAAT 57.820 37.037 0.00 0.00 0.00 3.16
958 1034 5.263968 AGTACGAAGGATACATGTTCTGG 57.736 43.478 2.30 0.00 41.41 3.86
1060 1141 2.919666 ATACGCTTGCATGTTGTTCC 57.080 45.000 1.14 0.00 0.00 3.62
1359 6245 0.908910 TAACGTGGATGAGGTGCCAT 59.091 50.000 0.00 0.00 36.41 4.40
1653 7020 4.037446 ACAACGCACAACTTCATTAACCAT 59.963 37.500 0.00 0.00 0.00 3.55
1777 7144 4.049393 GCAAGGAGCACGACAAGT 57.951 55.556 0.00 0.00 44.79 3.16
1797 7170 2.032071 CGTGGCTTCCTCCGGTTT 59.968 61.111 0.00 0.00 0.00 3.27
1968 7341 3.650950 AACCCGCACAGCCTCCAT 61.651 61.111 0.00 0.00 0.00 3.41
1983 7356 1.755395 CCATGGTGGGTGCATCCTG 60.755 63.158 18.94 6.79 32.67 3.86
2209 7588 1.555075 TGCTCTTTATCAAGCCGGAGT 59.445 47.619 5.05 0.00 37.73 3.85
2226 7605 0.105964 AGTTGCTGTTCGTGGCAGTA 59.894 50.000 0.00 0.00 39.68 2.74
2241 7620 0.566136 CAGTAACGCACGAGCATACG 59.434 55.000 5.50 0.00 42.27 3.06
2244 9448 0.526739 TAACGCACGAGCATACGCAT 60.527 50.000 5.50 0.00 42.27 4.73
2265 9469 0.526954 ACGCTTGTTTCGTCGTCACT 60.527 50.000 0.00 0.00 34.84 3.41
2287 9491 1.303074 TACGCAGAGAGGACGGTGT 60.303 57.895 0.00 0.00 33.86 4.16
2289 9493 1.006102 CGCAGAGAGGACGGTGTTT 60.006 57.895 0.00 0.00 0.00 2.83
2413 9783 4.883006 GCTAGCTAGCTACGTCCCTATATT 59.117 45.833 33.71 0.00 45.62 1.28
2426 9796 1.844357 CCTATATTATCGGTTCGCGCG 59.156 52.381 26.76 26.76 0.00 6.86
2441 9811 0.111089 GCGCGAGACTTGTGTGAAAG 60.111 55.000 12.10 0.00 0.00 2.62
2507 9878 2.975799 GGCCGAACTTTGTGCCGA 60.976 61.111 0.00 0.00 33.59 5.54
2576 9953 4.240103 CGGGCCATCCATCGCTGA 62.240 66.667 4.39 0.00 34.36 4.26
2586 9963 4.497006 CCATCCATCGCTGATTTTCTTCAC 60.497 45.833 0.00 0.00 0.00 3.18
2747 10130 0.539518 TCGGCCATGGAAGATCGAAA 59.460 50.000 18.40 0.00 0.00 3.46
2770 10155 4.211502 GCCGGCCATGGATGCAAC 62.212 66.667 18.11 0.00 0.00 4.17
2771 10156 2.755064 CCGGCCATGGATGCAACA 60.755 61.111 18.40 0.00 0.00 3.33
2837 10224 1.384222 GGCCGTTGACCAATCCCATC 61.384 60.000 0.00 0.00 0.00 3.51
2933 10324 1.353694 AGAGGCTTCTGCAGAACCATT 59.646 47.619 31.80 22.66 41.91 3.16
2949 10340 0.106569 CATTGCACCCCCTCATGCTA 60.107 55.000 0.00 0.00 42.55 3.49
3050 10444 1.669760 CGCGGGAAAGCTACAACCA 60.670 57.895 0.00 0.00 34.40 3.67
3113 10508 3.886505 ACCGAAATGACACAAAAGCCTTA 59.113 39.130 0.00 0.00 0.00 2.69
3115 10510 5.163499 ACCGAAATGACACAAAAGCCTTAAA 60.163 36.000 0.00 0.00 0.00 1.52
3131 10526 4.485163 CCTTAAACAAGCGCTGCTAAAAT 58.515 39.130 12.58 0.00 38.25 1.82
3171 10587 2.875933 TGGTAGAAAAGCTTCAACCGTG 59.124 45.455 0.00 0.00 33.64 4.94
3224 10640 6.868622 AGAAAGCTACAACTAGACACTATGG 58.131 40.000 0.00 0.00 0.00 2.74
3225 10641 4.657436 AGCTACAACTAGACACTATGGC 57.343 45.455 0.00 0.00 0.00 4.40
3282 10698 4.320667 TCAATCGTATGTGTGAAAAGCG 57.679 40.909 0.00 0.00 0.00 4.68
3290 10706 0.653636 GTGTGAAAAGCGTCAACCGA 59.346 50.000 0.00 0.00 39.56 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 7.175990 GGTTTTCCTTTCTGGTTTTTCCTTTTT 59.824 33.333 0.00 0.00 37.07 1.94
22 23 6.657541 GGTTTTCCTTTCTGGTTTTTCCTTTT 59.342 34.615 0.00 0.00 37.07 2.27
23 24 6.177610 GGTTTTCCTTTCTGGTTTTTCCTTT 58.822 36.000 0.00 0.00 37.07 3.11
24 25 5.625886 CGGTTTTCCTTTCTGGTTTTTCCTT 60.626 40.000 0.00 0.00 37.95 3.36
25 26 4.142026 CGGTTTTCCTTTCTGGTTTTTCCT 60.142 41.667 0.00 0.00 37.95 3.36
26 27 4.116961 CGGTTTTCCTTTCTGGTTTTTCC 58.883 43.478 0.00 0.00 37.95 3.13
27 28 4.116961 CCGGTTTTCCTTTCTGGTTTTTC 58.883 43.478 0.00 0.00 37.95 2.29
28 29 3.770388 TCCGGTTTTCCTTTCTGGTTTTT 59.230 39.130 0.00 0.00 37.95 1.94
29 30 3.367321 TCCGGTTTTCCTTTCTGGTTTT 58.633 40.909 0.00 0.00 37.95 2.43
30 31 3.021177 TCCGGTTTTCCTTTCTGGTTT 57.979 42.857 0.00 0.00 37.95 3.27
31 32 2.740506 TCCGGTTTTCCTTTCTGGTT 57.259 45.000 0.00 0.00 37.95 3.67
32 33 2.691526 GTTTCCGGTTTTCCTTTCTGGT 59.308 45.455 0.00 0.00 37.95 4.00
33 34 2.035449 GGTTTCCGGTTTTCCTTTCTGG 59.965 50.000 0.00 0.00 37.95 3.86
34 35 2.287368 CGGTTTCCGGTTTTCCTTTCTG 60.287 50.000 0.00 0.00 44.15 3.02
35 36 1.951602 CGGTTTCCGGTTTTCCTTTCT 59.048 47.619 0.00 0.00 44.15 2.52
36 37 2.410785 CGGTTTCCGGTTTTCCTTTC 57.589 50.000 0.00 0.00 44.15 2.62
48 49 1.002142 CTCCCGTGTTTTTCGGTTTCC 60.002 52.381 3.78 0.00 45.63 3.13
49 50 1.941975 TCTCCCGTGTTTTTCGGTTTC 59.058 47.619 3.78 0.00 45.63 2.78
50 51 1.672363 GTCTCCCGTGTTTTTCGGTTT 59.328 47.619 3.78 0.00 45.63 3.27
51 52 1.302366 GTCTCCCGTGTTTTTCGGTT 58.698 50.000 3.78 0.00 45.63 4.44
52 53 0.877213 CGTCTCCCGTGTTTTTCGGT 60.877 55.000 3.78 0.00 45.63 4.69
53 54 1.857364 CGTCTCCCGTGTTTTTCGG 59.143 57.895 0.00 0.00 46.49 4.30
54 55 1.203313 GCGTCTCCCGTGTTTTTCG 59.797 57.895 0.00 0.00 39.32 3.46
55 56 1.572941 GGCGTCTCCCGTGTTTTTC 59.427 57.895 0.00 0.00 39.32 2.29
56 57 2.248835 CGGCGTCTCCCGTGTTTTT 61.249 57.895 0.00 0.00 43.24 1.94
57 58 2.663852 CGGCGTCTCCCGTGTTTT 60.664 61.111 0.00 0.00 43.24 2.43
72 73 4.354212 CACTTGTCGCACGCACGG 62.354 66.667 0.00 0.00 0.00 4.94
73 74 3.543268 GACACTTGTCGCACGCACG 62.543 63.158 0.00 0.00 35.12 5.34
74 75 2.245532 GACACTTGTCGCACGCAC 59.754 61.111 0.00 0.00 35.12 5.34
96 97 2.431942 TTTTCCGAGACGCTCCGC 60.432 61.111 2.00 0.00 0.00 5.54
97 98 1.071567 GACTTTTCCGAGACGCTCCG 61.072 60.000 2.00 0.00 0.00 4.63
98 99 0.244178 AGACTTTTCCGAGACGCTCC 59.756 55.000 2.00 0.00 0.00 4.70
99 100 1.619983 GAGACTTTTCCGAGACGCTC 58.380 55.000 0.00 0.00 0.00 5.03
100 101 0.244178 GGAGACTTTTCCGAGACGCT 59.756 55.000 0.00 0.00 0.00 5.07
101 102 0.736672 GGGAGACTTTTCCGAGACGC 60.737 60.000 0.00 0.00 38.17 5.19
102 103 0.456312 CGGGAGACTTTTCCGAGACG 60.456 60.000 6.93 0.00 45.96 4.18
103 104 0.886563 TCGGGAGACTTTTCCGAGAC 59.113 55.000 10.24 0.00 46.48 3.36
104 105 3.351609 TCGGGAGACTTTTCCGAGA 57.648 52.632 10.24 0.00 46.48 4.04
126 127 3.767230 CAAGTGTCACGCGCGGAG 61.767 66.667 35.22 25.44 0.00 4.63
130 131 4.666532 GTGCCAAGTGTCACGCGC 62.667 66.667 5.73 0.00 0.00 6.86
134 135 4.012895 CCGCGTGCCAAGTGTCAC 62.013 66.667 4.92 0.00 0.00 3.67
152 153 0.249363 GATTAGTCGGGGAACGCTCC 60.249 60.000 0.00 0.00 43.86 4.70
153 154 0.594284 CGATTAGTCGGGGAACGCTC 60.594 60.000 0.00 0.00 44.00 5.03
154 155 1.436336 CGATTAGTCGGGGAACGCT 59.564 57.895 0.00 0.00 44.00 5.07
155 156 4.008035 CGATTAGTCGGGGAACGC 57.992 61.111 0.00 0.00 44.00 4.84
163 164 2.441780 GCTCCTCGCAACGATTAGTCG 61.442 57.143 6.04 6.04 45.39 4.18
164 165 1.201343 GCTCCTCGCAACGATTAGTC 58.799 55.000 0.00 0.00 38.92 2.59
165 166 0.525668 CGCTCCTCGCAACGATTAGT 60.526 55.000 0.00 0.00 39.08 2.24
166 167 2.208074 CGCTCCTCGCAACGATTAG 58.792 57.895 0.00 0.00 39.08 1.73
167 168 4.395080 CGCTCCTCGCAACGATTA 57.605 55.556 0.00 0.00 39.08 1.75
180 181 2.586258 TCACTAATTGAGGAGCGCTC 57.414 50.000 29.38 29.38 0.00 5.03
181 182 3.550437 AATCACTAATTGAGGAGCGCT 57.450 42.857 11.27 11.27 37.77 5.92
182 183 3.302740 CGAAATCACTAATTGAGGAGCGC 60.303 47.826 0.00 0.00 37.77 5.92
183 184 3.302740 GCGAAATCACTAATTGAGGAGCG 60.303 47.826 0.00 0.00 37.77 5.03
184 185 3.873952 AGCGAAATCACTAATTGAGGAGC 59.126 43.478 0.00 0.00 37.77 4.70
185 186 7.151308 AGATAGCGAAATCACTAATTGAGGAG 58.849 38.462 0.00 0.00 37.77 3.69
186 187 7.055667 AGATAGCGAAATCACTAATTGAGGA 57.944 36.000 0.00 0.00 37.77 3.71
187 188 8.085296 AGTAGATAGCGAAATCACTAATTGAGG 58.915 37.037 0.00 0.00 37.77 3.86
189 190 9.894783 GTAGTAGATAGCGAAATCACTAATTGA 57.105 33.333 0.00 0.00 39.11 2.57
190 191 9.900710 AGTAGTAGATAGCGAAATCACTAATTG 57.099 33.333 0.00 0.00 29.47 2.32
192 193 8.732531 GGAGTAGTAGATAGCGAAATCACTAAT 58.267 37.037 0.00 0.00 29.47 1.73
193 194 7.718314 TGGAGTAGTAGATAGCGAAATCACTAA 59.282 37.037 0.00 0.00 29.47 2.24
194 195 7.222161 TGGAGTAGTAGATAGCGAAATCACTA 58.778 38.462 0.00 0.00 0.00 2.74
195 196 6.062749 TGGAGTAGTAGATAGCGAAATCACT 58.937 40.000 0.00 0.00 0.00 3.41
196 197 6.315091 TGGAGTAGTAGATAGCGAAATCAC 57.685 41.667 0.00 0.00 0.00 3.06
197 198 6.546403 ACTTGGAGTAGTAGATAGCGAAATCA 59.454 38.462 0.00 0.00 0.00 2.57
198 199 6.972722 ACTTGGAGTAGTAGATAGCGAAATC 58.027 40.000 0.00 0.00 0.00 2.17
199 200 6.293516 CGACTTGGAGTAGTAGATAGCGAAAT 60.294 42.308 0.00 0.00 0.00 2.17
200 201 5.007430 CGACTTGGAGTAGTAGATAGCGAAA 59.993 44.000 0.00 0.00 0.00 3.46
201 202 4.510711 CGACTTGGAGTAGTAGATAGCGAA 59.489 45.833 0.00 0.00 0.00 4.70
202 203 4.056740 CGACTTGGAGTAGTAGATAGCGA 58.943 47.826 0.00 0.00 0.00 4.93
203 204 3.808726 ACGACTTGGAGTAGTAGATAGCG 59.191 47.826 0.00 0.00 32.24 4.26
204 205 6.875195 AGATACGACTTGGAGTAGTAGATAGC 59.125 42.308 7.06 0.00 39.15 2.97
211 212 9.874205 GAGTATATAGATACGACTTGGAGTAGT 57.126 37.037 1.97 0.00 42.50 2.73
213 214 9.872721 CAGAGTATATAGATACGACTTGGAGTA 57.127 37.037 1.97 0.00 42.50 2.59
214 215 8.595421 TCAGAGTATATAGATACGACTTGGAGT 58.405 37.037 1.97 0.00 42.50 3.85
215 216 9.438228 TTCAGAGTATATAGATACGACTTGGAG 57.562 37.037 1.97 0.00 42.50 3.86
216 217 9.438228 CTTCAGAGTATATAGATACGACTTGGA 57.562 37.037 1.97 0.00 42.50 3.53
217 218 9.221933 ACTTCAGAGTATATAGATACGACTTGG 57.778 37.037 1.97 2.65 42.50 3.61
230 231 9.461312 TGCCAAAATTTGTACTTCAGAGTATAT 57.539 29.630 4.92 0.00 40.33 0.86
231 232 8.856153 TGCCAAAATTTGTACTTCAGAGTATA 57.144 30.769 4.92 0.00 40.33 1.47
232 233 7.665559 TCTGCCAAAATTTGTACTTCAGAGTAT 59.334 33.333 4.92 0.00 40.33 2.12
233 234 6.995686 TCTGCCAAAATTTGTACTTCAGAGTA 59.004 34.615 4.92 0.00 37.33 2.59
234 235 5.827797 TCTGCCAAAATTTGTACTTCAGAGT 59.172 36.000 4.92 0.00 39.97 3.24
235 236 6.317789 TCTGCCAAAATTTGTACTTCAGAG 57.682 37.500 4.92 0.00 0.00 3.35
236 237 6.707440 TTCTGCCAAAATTTGTACTTCAGA 57.293 33.333 4.92 6.42 0.00 3.27
237 238 5.403466 GCTTCTGCCAAAATTTGTACTTCAG 59.597 40.000 4.92 4.47 0.00 3.02
238 239 5.163468 TGCTTCTGCCAAAATTTGTACTTCA 60.163 36.000 4.92 0.00 38.71 3.02
239 240 5.288804 TGCTTCTGCCAAAATTTGTACTTC 58.711 37.500 4.92 0.00 38.71 3.01
240 241 5.275067 TGCTTCTGCCAAAATTTGTACTT 57.725 34.783 4.92 0.00 38.71 2.24
247 248 4.527816 TGGACTATTGCTTCTGCCAAAATT 59.472 37.500 0.00 0.00 38.71 1.82
251 252 2.224744 TGTGGACTATTGCTTCTGCCAA 60.225 45.455 0.00 0.00 38.71 4.52
254 255 2.615912 GGATGTGGACTATTGCTTCTGC 59.384 50.000 0.00 0.00 40.20 4.26
314 315 9.781633 ACTTCAGAGTATATAGATACGACTTGT 57.218 33.333 1.97 3.37 42.50 3.16
327 328 9.461312 TGCCAAAATTTGTACTTCAGAGTATAT 57.539 29.630 4.92 0.00 40.33 0.86
328 329 8.856153 TGCCAAAATTTGTACTTCAGAGTATA 57.144 30.769 4.92 0.00 40.33 1.47
329 330 7.665559 TCTGCCAAAATTTGTACTTCAGAGTAT 59.334 33.333 4.92 0.00 40.33 2.12
330 331 6.995686 TCTGCCAAAATTTGTACTTCAGAGTA 59.004 34.615 4.92 0.00 37.33 2.59
331 332 5.827797 TCTGCCAAAATTTGTACTTCAGAGT 59.172 36.000 4.92 0.00 39.97 3.24
332 333 6.317789 TCTGCCAAAATTTGTACTTCAGAG 57.682 37.500 4.92 0.00 0.00 3.35
333 334 6.707440 TTCTGCCAAAATTTGTACTTCAGA 57.293 33.333 4.92 6.42 0.00 3.27
334 335 5.403466 GCTTCTGCCAAAATTTGTACTTCAG 59.597 40.000 4.92 4.47 0.00 3.02
335 336 5.163468 TGCTTCTGCCAAAATTTGTACTTCA 60.163 36.000 4.92 0.00 38.71 3.02
336 337 5.288804 TGCTTCTGCCAAAATTTGTACTTC 58.711 37.500 4.92 0.00 38.71 3.01
337 338 5.275067 TGCTTCTGCCAAAATTTGTACTT 57.725 34.783 4.92 0.00 38.71 2.24
338 339 4.935352 TGCTTCTGCCAAAATTTGTACT 57.065 36.364 4.92 0.00 38.71 2.73
339 340 7.832503 ATATTGCTTCTGCCAAAATTTGTAC 57.167 32.000 4.92 0.00 38.71 2.90
340 341 8.845413 AAATATTGCTTCTGCCAAAATTTGTA 57.155 26.923 4.92 0.00 38.71 2.41
341 342 7.444792 TGAAATATTGCTTCTGCCAAAATTTGT 59.555 29.630 4.92 0.00 38.71 2.83
342 343 7.747357 GTGAAATATTGCTTCTGCCAAAATTTG 59.253 33.333 0.00 0.00 38.71 2.32
343 344 7.444792 TGTGAAATATTGCTTCTGCCAAAATTT 59.555 29.630 0.00 0.00 38.71 1.82
344 345 6.935771 TGTGAAATATTGCTTCTGCCAAAATT 59.064 30.769 0.00 0.00 38.71 1.82
345 346 6.465948 TGTGAAATATTGCTTCTGCCAAAAT 58.534 32.000 0.00 0.00 38.71 1.82
346 347 5.851720 TGTGAAATATTGCTTCTGCCAAAA 58.148 33.333 0.00 0.00 38.71 2.44
347 348 5.465532 TGTGAAATATTGCTTCTGCCAAA 57.534 34.783 0.00 0.00 38.71 3.28
348 349 5.394443 GGATGTGAAATATTGCTTCTGCCAA 60.394 40.000 0.00 0.00 38.71 4.52
349 350 4.098349 GGATGTGAAATATTGCTTCTGCCA 59.902 41.667 0.00 0.00 38.71 4.92
350 351 4.098349 TGGATGTGAAATATTGCTTCTGCC 59.902 41.667 0.00 0.00 38.71 4.85
351 352 5.039333 GTGGATGTGAAATATTGCTTCTGC 58.961 41.667 0.00 0.00 40.20 4.26
352 353 6.198650 TGTGGATGTGAAATATTGCTTCTG 57.801 37.500 0.00 0.00 0.00 3.02
353 354 6.832384 AGATGTGGATGTGAAATATTGCTTCT 59.168 34.615 0.00 0.00 0.00 2.85
354 355 7.035840 AGATGTGGATGTGAAATATTGCTTC 57.964 36.000 0.00 0.00 0.00 3.86
355 356 7.341256 AGAAGATGTGGATGTGAAATATTGCTT 59.659 33.333 0.00 0.00 0.00 3.91
356 357 6.832384 AGAAGATGTGGATGTGAAATATTGCT 59.168 34.615 0.00 0.00 0.00 3.91
357 358 6.916387 CAGAAGATGTGGATGTGAAATATTGC 59.084 38.462 0.00 0.00 0.00 3.56
358 359 8.217131 TCAGAAGATGTGGATGTGAAATATTG 57.783 34.615 0.00 0.00 0.00 1.90
359 360 8.270030 TCTCAGAAGATGTGGATGTGAAATATT 58.730 33.333 0.00 0.00 0.00 1.28
360 361 7.799081 TCTCAGAAGATGTGGATGTGAAATAT 58.201 34.615 0.00 0.00 0.00 1.28
361 362 7.186570 TCTCAGAAGATGTGGATGTGAAATA 57.813 36.000 0.00 0.00 0.00 1.40
362 363 6.058553 TCTCAGAAGATGTGGATGTGAAAT 57.941 37.500 0.00 0.00 0.00 2.17
363 364 5.488262 TCTCAGAAGATGTGGATGTGAAA 57.512 39.130 0.00 0.00 0.00 2.69
364 365 5.688814 ATCTCAGAAGATGTGGATGTGAA 57.311 39.130 0.00 0.00 40.84 3.18
365 366 6.796785 TTATCTCAGAAGATGTGGATGTGA 57.203 37.500 0.00 0.00 42.36 3.58
366 367 7.215085 TCATTATCTCAGAAGATGTGGATGTG 58.785 38.462 0.00 0.00 42.36 3.21
367 368 7.370905 TCATTATCTCAGAAGATGTGGATGT 57.629 36.000 0.00 0.00 42.36 3.06
368 369 7.148390 GCATCATTATCTCAGAAGATGTGGATG 60.148 40.741 14.22 14.22 42.36 3.51
369 370 6.879993 GCATCATTATCTCAGAAGATGTGGAT 59.120 38.462 9.93 0.00 42.36 3.41
370 371 6.042897 AGCATCATTATCTCAGAAGATGTGGA 59.957 38.462 9.93 0.00 42.36 4.02
371 372 6.231951 AGCATCATTATCTCAGAAGATGTGG 58.768 40.000 9.93 2.78 42.36 4.17
372 373 7.731882 AAGCATCATTATCTCAGAAGATGTG 57.268 36.000 9.93 5.75 42.36 3.21
373 374 9.656040 GATAAGCATCATTATCTCAGAAGATGT 57.344 33.333 9.93 0.00 42.36 3.06
374 375 9.878667 AGATAAGCATCATTATCTCAGAAGATG 57.121 33.333 3.68 0.00 45.23 2.90
379 380 9.484806 TGGATAGATAAGCATCATTATCTCAGA 57.515 33.333 11.23 0.00 45.23 3.27
440 441 7.649705 GGGAGTACGCATCATATAATGTATCTG 59.350 40.741 0.00 0.00 0.00 2.90
460 461 4.033709 CTCTTCAAAGGATGGAGGGAGTA 58.966 47.826 0.00 0.00 37.29 2.59
461 462 2.843113 CTCTTCAAAGGATGGAGGGAGT 59.157 50.000 0.00 0.00 37.29 3.85
462 463 2.843113 ACTCTTCAAAGGATGGAGGGAG 59.157 50.000 0.00 0.00 37.29 4.30
463 464 2.573462 CACTCTTCAAAGGATGGAGGGA 59.427 50.000 0.00 0.00 37.29 4.20
464 465 2.307098 ACACTCTTCAAAGGATGGAGGG 59.693 50.000 0.00 0.00 41.48 4.30
465 466 3.710209 ACACTCTTCAAAGGATGGAGG 57.290 47.619 0.00 0.00 35.11 4.30
466 467 5.413309 AGTACACTCTTCAAAGGATGGAG 57.587 43.478 0.00 0.00 35.78 3.86
467 468 5.280011 GGAAGTACACTCTTCAAAGGATGGA 60.280 44.000 8.36 0.00 43.72 3.41
468 469 4.938226 GGAAGTACACTCTTCAAAGGATGG 59.062 45.833 8.36 0.00 43.72 3.51
469 470 5.551233 TGGAAGTACACTCTTCAAAGGATG 58.449 41.667 8.36 0.00 43.72 3.51
470 471 5.825593 TGGAAGTACACTCTTCAAAGGAT 57.174 39.130 8.36 0.00 43.72 3.24
471 472 5.130477 AGTTGGAAGTACACTCTTCAAAGGA 59.870 40.000 8.36 0.00 43.72 3.36
472 473 5.368989 AGTTGGAAGTACACTCTTCAAAGG 58.631 41.667 8.36 0.00 43.72 3.11
473 474 6.927294 AAGTTGGAAGTACACTCTTCAAAG 57.073 37.500 8.36 0.00 43.72 2.77
474 475 6.657541 ACAAAGTTGGAAGTACACTCTTCAAA 59.342 34.615 8.36 1.35 43.72 2.69
475 476 6.177610 ACAAAGTTGGAAGTACACTCTTCAA 58.822 36.000 8.36 0.00 43.72 2.69
476 477 5.741011 ACAAAGTTGGAAGTACACTCTTCA 58.259 37.500 8.36 0.00 43.72 3.02
477 478 6.315393 TCAACAAAGTTGGAAGTACACTCTTC 59.685 38.462 9.72 0.00 41.92 2.87
478 479 6.177610 TCAACAAAGTTGGAAGTACACTCTT 58.822 36.000 9.72 0.00 0.00 2.85
479 480 5.741011 TCAACAAAGTTGGAAGTACACTCT 58.259 37.500 9.72 0.00 0.00 3.24
480 481 6.431198 TTCAACAAAGTTGGAAGTACACTC 57.569 37.500 9.72 0.00 0.00 3.51
481 482 6.827586 TTTCAACAAAGTTGGAAGTACACT 57.172 33.333 9.72 0.00 0.00 3.55
482 483 7.088272 ACTTTTCAACAAAGTTGGAAGTACAC 58.912 34.615 20.36 0.00 37.18 2.90
483 484 7.222000 ACTTTTCAACAAAGTTGGAAGTACA 57.778 32.000 20.36 3.25 37.18 2.90
484 485 9.628746 TTAACTTTTCAACAAAGTTGGAAGTAC 57.371 29.630 18.64 0.00 46.41 2.73
486 487 8.984764 GTTTAACTTTTCAACAAAGTTGGAAGT 58.015 29.630 18.64 18.11 46.41 3.01
487 488 9.203421 AGTTTAACTTTTCAACAAAGTTGGAAG 57.797 29.630 18.64 14.91 46.41 3.46
488 489 9.549078 AAGTTTAACTTTTCAACAAAGTTGGAA 57.451 25.926 18.64 5.94 46.41 3.53
489 490 9.549078 AAAGTTTAACTTTTCAACAAAGTTGGA 57.451 25.926 16.34 0.00 45.38 3.53
520 521 9.938670 GCATTATTGTATAAATACGGTCAAACA 57.061 29.630 0.00 0.00 36.06 2.83
521 522 9.938670 TGCATTATTGTATAAATACGGTCAAAC 57.061 29.630 0.00 0.00 36.06 2.93
522 523 9.938670 GTGCATTATTGTATAAATACGGTCAAA 57.061 29.630 0.00 0.00 36.06 2.69
523 524 8.561212 GGTGCATTATTGTATAAATACGGTCAA 58.439 33.333 0.00 0.00 36.06 3.18
524 525 7.715686 TGGTGCATTATTGTATAAATACGGTCA 59.284 33.333 0.00 0.00 36.06 4.02
525 526 8.090250 TGGTGCATTATTGTATAAATACGGTC 57.910 34.615 0.00 0.00 36.06 4.79
526 527 8.347035 GTTGGTGCATTATTGTATAAATACGGT 58.653 33.333 0.00 0.00 36.06 4.83
527 528 8.346300 TGTTGGTGCATTATTGTATAAATACGG 58.654 33.333 0.00 0.00 36.06 4.02
528 529 9.891828 ATGTTGGTGCATTATTGTATAAATACG 57.108 29.630 0.00 0.00 36.06 3.06
534 535 9.689976 GCATAAATGTTGGTGCATTATTGTATA 57.310 29.630 0.00 0.00 38.03 1.47
535 536 7.656948 GGCATAAATGTTGGTGCATTATTGTAT 59.343 33.333 0.00 0.00 38.03 2.29
536 537 6.983307 GGCATAAATGTTGGTGCATTATTGTA 59.017 34.615 0.00 0.00 38.03 2.41
537 538 5.816777 GGCATAAATGTTGGTGCATTATTGT 59.183 36.000 0.00 0.00 38.03 2.71
538 539 5.816258 TGGCATAAATGTTGGTGCATTATTG 59.184 36.000 0.00 0.00 38.03 1.90
539 540 5.987098 TGGCATAAATGTTGGTGCATTATT 58.013 33.333 0.00 0.00 38.03 1.40
540 541 5.611128 TGGCATAAATGTTGGTGCATTAT 57.389 34.783 0.00 0.00 38.03 1.28
541 542 5.128335 TGATGGCATAAATGTTGGTGCATTA 59.872 36.000 0.00 0.00 38.03 1.90
542 543 3.977134 TGGCATAAATGTTGGTGCATT 57.023 38.095 0.00 0.00 40.43 3.56
543 544 3.451540 TGATGGCATAAATGTTGGTGCAT 59.548 39.130 0.00 0.00 39.27 3.96
544 545 2.830321 TGATGGCATAAATGTTGGTGCA 59.170 40.909 0.00 0.00 39.27 4.57
545 546 3.523606 TGATGGCATAAATGTTGGTGC 57.476 42.857 0.00 0.00 36.88 5.01
546 547 5.075858 ACTTGATGGCATAAATGTTGGTG 57.924 39.130 0.00 0.00 0.00 4.17
547 548 5.743636 AACTTGATGGCATAAATGTTGGT 57.256 34.783 0.00 0.00 0.00 3.67
548 549 6.866480 ACTAACTTGATGGCATAAATGTTGG 58.134 36.000 16.37 15.83 0.00 3.77
549 550 7.645340 GCTACTAACTTGATGGCATAAATGTTG 59.355 37.037 16.37 11.40 0.00 3.33
550 551 7.339212 TGCTACTAACTTGATGGCATAAATGTT 59.661 33.333 0.00 8.53 0.00 2.71
551 552 6.828273 TGCTACTAACTTGATGGCATAAATGT 59.172 34.615 0.00 0.00 0.00 2.71
552 553 7.263100 TGCTACTAACTTGATGGCATAAATG 57.737 36.000 0.00 0.00 0.00 2.32
553 554 8.469309 AATGCTACTAACTTGATGGCATAAAT 57.531 30.769 0.00 0.00 37.85 1.40
554 555 7.880160 AATGCTACTAACTTGATGGCATAAA 57.120 32.000 0.00 0.00 37.85 1.40
555 556 8.428852 TCTAATGCTACTAACTTGATGGCATAA 58.571 33.333 0.00 0.00 37.85 1.90
556 557 7.962441 TCTAATGCTACTAACTTGATGGCATA 58.038 34.615 0.00 0.00 37.85 3.14
557 558 6.830912 TCTAATGCTACTAACTTGATGGCAT 58.169 36.000 0.00 0.00 40.04 4.40
558 559 6.233905 TCTAATGCTACTAACTTGATGGCA 57.766 37.500 0.00 0.00 0.00 4.92
559 560 7.442364 TGAATCTAATGCTACTAACTTGATGGC 59.558 37.037 0.00 0.00 0.00 4.40
560 561 8.893219 TGAATCTAATGCTACTAACTTGATGG 57.107 34.615 0.00 0.00 0.00 3.51
628 629 9.075519 CGAGTTTGTGCAAAAATATATCAATGT 57.924 29.630 5.11 0.00 31.33 2.71
629 630 8.533965 CCGAGTTTGTGCAAAAATATATCAATG 58.466 33.333 5.11 0.00 31.33 2.82
630 631 8.250332 ACCGAGTTTGTGCAAAAATATATCAAT 58.750 29.630 5.11 0.00 31.33 2.57
631 632 7.598278 ACCGAGTTTGTGCAAAAATATATCAA 58.402 30.769 5.11 0.00 31.33 2.57
632 633 7.094592 TGACCGAGTTTGTGCAAAAATATATCA 60.095 33.333 5.11 4.10 31.33 2.15
633 634 7.247728 TGACCGAGTTTGTGCAAAAATATATC 58.752 34.615 5.11 1.66 31.33 1.63
634 635 7.151999 TGACCGAGTTTGTGCAAAAATATAT 57.848 32.000 5.11 0.00 31.33 0.86
635 636 6.561737 TGACCGAGTTTGTGCAAAAATATA 57.438 33.333 5.11 0.00 31.33 0.86
636 637 5.446143 TGACCGAGTTTGTGCAAAAATAT 57.554 34.783 5.11 0.00 31.33 1.28
637 638 4.902443 TGACCGAGTTTGTGCAAAAATA 57.098 36.364 5.11 0.00 31.33 1.40
638 639 3.791973 TGACCGAGTTTGTGCAAAAAT 57.208 38.095 5.11 0.00 31.33 1.82
639 640 3.577649 TTGACCGAGTTTGTGCAAAAA 57.422 38.095 0.00 0.00 31.33 1.94
640 641 3.246619 GTTTGACCGAGTTTGTGCAAAA 58.753 40.909 0.00 0.00 31.33 2.44
641 642 2.229062 TGTTTGACCGAGTTTGTGCAAA 59.771 40.909 0.00 0.00 0.00 3.68
642 643 1.813178 TGTTTGACCGAGTTTGTGCAA 59.187 42.857 0.00 0.00 0.00 4.08
643 644 1.454201 TGTTTGACCGAGTTTGTGCA 58.546 45.000 0.00 0.00 0.00 4.57
644 645 2.774439 ATGTTTGACCGAGTTTGTGC 57.226 45.000 0.00 0.00 0.00 4.57
645 646 4.035091 TCTCAATGTTTGACCGAGTTTGTG 59.965 41.667 0.00 0.00 35.46 3.33
646 647 4.196193 TCTCAATGTTTGACCGAGTTTGT 58.804 39.130 0.00 0.00 35.46 2.83
647 648 4.811555 TCTCAATGTTTGACCGAGTTTG 57.188 40.909 0.00 0.00 35.46 2.93
648 649 6.231211 ACTATCTCAATGTTTGACCGAGTTT 58.769 36.000 0.00 0.00 35.46 2.66
649 650 5.794894 ACTATCTCAATGTTTGACCGAGTT 58.205 37.500 0.00 0.00 35.46 3.01
650 651 5.407407 ACTATCTCAATGTTTGACCGAGT 57.593 39.130 0.00 0.00 35.46 4.18
651 652 6.727824 AAACTATCTCAATGTTTGACCGAG 57.272 37.500 0.00 0.00 35.46 4.63
657 658 6.127897 GGAGGGTCAAACTATCTCAATGTTTG 60.128 42.308 10.43 10.43 46.74 2.93
658 659 5.946377 GGAGGGTCAAACTATCTCAATGTTT 59.054 40.000 0.00 0.00 34.69 2.83
659 660 5.014123 TGGAGGGTCAAACTATCTCAATGTT 59.986 40.000 0.00 0.00 0.00 2.71
660 661 4.536090 TGGAGGGTCAAACTATCTCAATGT 59.464 41.667 0.00 0.00 0.00 2.71
661 662 5.102953 TGGAGGGTCAAACTATCTCAATG 57.897 43.478 0.00 0.00 0.00 2.82
662 663 5.014123 TGTTGGAGGGTCAAACTATCTCAAT 59.986 40.000 0.00 0.00 0.00 2.57
663 664 4.349636 TGTTGGAGGGTCAAACTATCTCAA 59.650 41.667 0.00 0.00 0.00 3.02
664 665 3.907474 TGTTGGAGGGTCAAACTATCTCA 59.093 43.478 0.00 0.00 0.00 3.27
665 666 4.553330 TGTTGGAGGGTCAAACTATCTC 57.447 45.455 0.00 0.00 0.00 2.75
666 667 4.993705 TTGTTGGAGGGTCAAACTATCT 57.006 40.909 0.00 0.00 0.00 1.98
667 668 5.070685 ACTTTGTTGGAGGGTCAAACTATC 58.929 41.667 0.00 0.00 0.00 2.08
668 669 5.061721 ACTTTGTTGGAGGGTCAAACTAT 57.938 39.130 0.00 0.00 0.00 2.12
669 670 4.513406 ACTTTGTTGGAGGGTCAAACTA 57.487 40.909 0.00 0.00 0.00 2.24
670 671 3.382083 ACTTTGTTGGAGGGTCAAACT 57.618 42.857 0.00 0.00 0.00 2.66
671 672 3.430236 CCAACTTTGTTGGAGGGTCAAAC 60.430 47.826 21.06 0.00 42.06 2.93
672 673 2.763448 CCAACTTTGTTGGAGGGTCAAA 59.237 45.455 21.06 0.00 42.06 2.69
673 674 2.024846 TCCAACTTTGTTGGAGGGTCAA 60.025 45.455 23.38 4.76 43.17 3.18
674 675 1.566703 TCCAACTTTGTTGGAGGGTCA 59.433 47.619 23.38 5.39 43.17 4.02
675 676 2.358322 TCCAACTTTGTTGGAGGGTC 57.642 50.000 23.38 0.00 43.17 4.46
680 681 4.850680 AGTGTACTTCCAACTTTGTTGGA 58.149 39.130 23.38 23.38 46.08 3.53
681 682 4.881850 AGAGTGTACTTCCAACTTTGTTGG 59.118 41.667 19.97 19.97 40.87 3.77
682 683 6.436843 AAGAGTGTACTTCCAACTTTGTTG 57.563 37.500 3.69 3.69 0.00 3.33
683 684 8.570068 TTAAAGAGTGTACTTCCAACTTTGTT 57.430 30.769 0.00 0.00 31.02 2.83
684 685 8.570068 TTTAAAGAGTGTACTTCCAACTTTGT 57.430 30.769 0.00 0.00 31.02 2.83
685 686 8.129211 CCTTTAAAGAGTGTACTTCCAACTTTG 58.871 37.037 16.98 0.00 31.02 2.77
686 687 8.050930 TCCTTTAAAGAGTGTACTTCCAACTTT 58.949 33.333 16.98 0.00 32.26 2.66
687 688 7.498239 GTCCTTTAAAGAGTGTACTTCCAACTT 59.502 37.037 16.98 0.00 0.00 2.66
688 689 6.990939 GTCCTTTAAAGAGTGTACTTCCAACT 59.009 38.462 16.98 0.00 0.00 3.16
689 690 6.073927 CGTCCTTTAAAGAGTGTACTTCCAAC 60.074 42.308 16.98 0.00 0.00 3.77
690 691 5.987347 CGTCCTTTAAAGAGTGTACTTCCAA 59.013 40.000 16.98 0.00 0.00 3.53
691 692 5.510179 CCGTCCTTTAAAGAGTGTACTTCCA 60.510 44.000 16.98 0.00 0.00 3.53
692 693 4.928020 CCGTCCTTTAAAGAGTGTACTTCC 59.072 45.833 16.98 0.00 0.00 3.46
693 694 5.776744 TCCGTCCTTTAAAGAGTGTACTTC 58.223 41.667 16.98 0.00 0.00 3.01
694 695 5.279356 CCTCCGTCCTTTAAAGAGTGTACTT 60.279 44.000 16.98 0.00 0.00 2.24
695 696 4.220163 CCTCCGTCCTTTAAAGAGTGTACT 59.780 45.833 16.98 0.00 0.00 2.73
696 697 4.492611 CCTCCGTCCTTTAAAGAGTGTAC 58.507 47.826 16.98 5.84 0.00 2.90
697 698 3.512724 CCCTCCGTCCTTTAAAGAGTGTA 59.487 47.826 16.98 0.00 0.00 2.90
698 699 2.302157 CCCTCCGTCCTTTAAAGAGTGT 59.698 50.000 16.98 0.00 0.00 3.55
699 700 2.565834 TCCCTCCGTCCTTTAAAGAGTG 59.434 50.000 16.98 5.33 0.00 3.51
700 701 2.898662 TCCCTCCGTCCTTTAAAGAGT 58.101 47.619 16.98 0.00 0.00 3.24
701 702 3.975168 TTCCCTCCGTCCTTTAAAGAG 57.025 47.619 16.98 7.03 0.00 2.85
702 703 5.903589 AGATATTCCCTCCGTCCTTTAAAGA 59.096 40.000 16.98 0.24 0.00 2.52
703 704 6.176014 AGATATTCCCTCCGTCCTTTAAAG 57.824 41.667 8.32 8.32 0.00 1.85
704 705 7.733501 AGATAGATATTCCCTCCGTCCTTTAAA 59.266 37.037 0.00 0.00 0.00 1.52
705 706 7.246763 AGATAGATATTCCCTCCGTCCTTTAA 58.753 38.462 0.00 0.00 0.00 1.52
706 707 6.801953 AGATAGATATTCCCTCCGTCCTTTA 58.198 40.000 0.00 0.00 0.00 1.85
707 708 5.656420 AGATAGATATTCCCTCCGTCCTTT 58.344 41.667 0.00 0.00 0.00 3.11
708 709 5.278127 AGATAGATATTCCCTCCGTCCTT 57.722 43.478 0.00 0.00 0.00 3.36
709 710 4.957606 AGATAGATATTCCCTCCGTCCT 57.042 45.455 0.00 0.00 0.00 3.85
710 711 5.757988 AGTAGATAGATATTCCCTCCGTCC 58.242 45.833 0.00 0.00 0.00 4.79
711 712 7.567458 AGTAGTAGATAGATATTCCCTCCGTC 58.433 42.308 0.00 0.00 0.00 4.79
712 713 7.365831 GGAGTAGTAGATAGATATTCCCTCCGT 60.366 44.444 0.00 0.00 0.00 4.69
713 714 6.993902 GGAGTAGTAGATAGATATTCCCTCCG 59.006 46.154 0.00 0.00 0.00 4.63
714 715 7.874252 TGGAGTAGTAGATAGATATTCCCTCC 58.126 42.308 0.00 0.00 35.33 4.30
715 716 9.403583 CTTGGAGTAGTAGATAGATATTCCCTC 57.596 40.741 0.00 0.00 0.00 4.30
716 717 7.837187 GCTTGGAGTAGTAGATAGATATTCCCT 59.163 40.741 0.00 0.00 0.00 4.20
717 718 7.068962 GGCTTGGAGTAGTAGATAGATATTCCC 59.931 44.444 0.00 0.00 0.00 3.97
718 719 7.616150 TGGCTTGGAGTAGTAGATAGATATTCC 59.384 40.741 0.00 0.00 0.00 3.01
719 720 8.582657 TGGCTTGGAGTAGTAGATAGATATTC 57.417 38.462 0.00 0.00 0.00 1.75
720 721 8.958060 TTGGCTTGGAGTAGTAGATAGATATT 57.042 34.615 0.00 0.00 0.00 1.28
721 722 7.617723 CCTTGGCTTGGAGTAGTAGATAGATAT 59.382 40.741 0.00 0.00 0.00 1.63
845 921 8.563123 TTGGATTGGAGTAGTAGATAGATACG 57.437 38.462 0.00 0.00 0.00 3.06
871 947 6.431852 TCTCTGATTGAGCAAAACAATGATCA 59.568 34.615 0.00 0.00 43.41 2.92
934 1010 6.039493 ACCAGAACATGTATCCTTCGTACTAG 59.961 42.308 0.00 0.00 0.00 2.57
937 1013 4.804139 CACCAGAACATGTATCCTTCGTAC 59.196 45.833 0.00 0.00 0.00 3.67
938 1014 4.464951 ACACCAGAACATGTATCCTTCGTA 59.535 41.667 0.00 0.00 0.00 3.43
939 1015 3.260884 ACACCAGAACATGTATCCTTCGT 59.739 43.478 0.00 0.00 0.00 3.85
958 1034 6.249359 CCGCATCTTATAGATAGACGTACAC 58.751 44.000 0.00 0.00 32.12 2.90
1060 1141 5.276868 CCGGATTTAGCACGACAAAGAATAG 60.277 44.000 0.00 0.00 0.00 1.73
1359 6245 1.788229 TCTTCTCCGGTATGCATGGA 58.212 50.000 10.16 6.77 0.00 3.41
1632 6524 4.277174 TCATGGTTAATGAAGTTGTGCGTT 59.723 37.500 0.00 0.00 42.49 4.84
1968 7341 2.531428 TCCAGGATGCACCCACCA 60.531 61.111 0.00 0.00 40.05 4.17
2188 7567 2.171448 ACTCCGGCTTGATAAAGAGCAT 59.829 45.455 0.00 0.00 40.63 3.79
2209 7588 0.941542 GTTACTGCCACGAACAGCAA 59.058 50.000 0.00 0.00 38.82 3.91
2226 7605 1.358725 AATGCGTATGCTCGTGCGTT 61.359 50.000 9.76 0.00 43.34 4.84
2241 7620 1.136446 ACGACGAAACAAGCGTAATGC 60.136 47.619 0.00 0.00 42.77 3.56
2244 9448 1.518102 GTGACGACGAAACAAGCGTAA 59.482 47.619 0.00 0.00 42.77 3.18
2265 9469 2.104859 CGTCCTCTCTGCGTACGGA 61.105 63.158 18.39 14.19 0.00 4.69
2403 9773 3.432782 CGCGAACCGATAATATAGGGAC 58.567 50.000 0.00 0.00 40.02 4.46
2413 9783 1.985447 AAGTCTCGCGCGAACCGATA 61.985 55.000 33.99 9.68 40.02 2.92
2461 9831 2.932614 TGTTGCCAAACGTTTTCCATTG 59.067 40.909 11.66 0.00 39.30 2.82
2576 9953 0.676782 CGCGGGAGGGTGAAGAAAAT 60.677 55.000 0.00 0.00 38.10 1.82
2628 10006 4.144727 AGGACGGGGCGAGATCCT 62.145 66.667 0.00 0.00 36.72 3.24
2769 10154 4.760047 GCGTGGCGGGATGAGTGT 62.760 66.667 0.00 0.00 0.00 3.55
2770 10155 3.958147 AAGCGTGGCGGGATGAGTG 62.958 63.158 0.00 0.00 0.00 3.51
2771 10156 3.706373 AAGCGTGGCGGGATGAGT 61.706 61.111 0.00 0.00 0.00 3.41
2806 10192 2.338015 AACGGCCTTGCTGCATCTG 61.338 57.895 1.84 3.83 38.71 2.90
2933 10324 1.496444 TTGTAGCATGAGGGGGTGCA 61.496 55.000 0.00 0.00 43.63 4.57
2981 10374 1.533625 TCCGGTTGAAGCTTTCCATG 58.466 50.000 0.00 0.00 0.00 3.66
3050 10444 7.120579 TCGAAGGTTGTAGCATTTTATGTCAAT 59.879 33.333 0.00 0.00 0.00 2.57
3113 10508 3.641437 TCATTTTAGCAGCGCTTGTTT 57.359 38.095 7.50 0.00 40.44 2.83
3115 10510 3.641437 TTTCATTTTAGCAGCGCTTGT 57.359 38.095 7.50 0.00 40.44 3.16
3131 10526 7.398829 TCTACCAATGGTTGTAGCTATTTTCA 58.601 34.615 11.41 0.00 37.09 2.69
3182 10598 5.743117 CTTTCTCTCTCAATGGTTGGAGAT 58.257 41.667 9.64 0.00 39.29 2.75
3183 10599 4.564406 GCTTTCTCTCTCAATGGTTGGAGA 60.564 45.833 9.14 9.14 37.81 3.71
3370 10787 5.920273 CACGGTCATAGCAAAAGAAAATGTT 59.080 36.000 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.