Multiple sequence alignment - TraesCS2B01G126900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G126900 chr2B 100.000 4337 0 0 1 4337 95098440 95094104 0.000000e+00 8010.0
1 TraesCS2B01G126900 chr2B 96.899 258 8 0 613 870 517503723 517503466 2.400000e-117 433.0
2 TraesCS2B01G126900 chr2B 95.817 263 10 1 608 870 298132503 298132242 1.440000e-114 424.0
3 TraesCS2B01G126900 chr2B 94.000 50 2 1 3481 3529 95094856 95094807 1.670000e-09 75.0
4 TraesCS2B01G126900 chr2B 94.000 50 2 1 3585 3634 95094960 95094912 1.670000e-09 75.0
5 TraesCS2B01G126900 chr2B 91.489 47 4 0 286 332 441872402 441872448 1.010000e-06 65.8
6 TraesCS2B01G126900 chr2B 100.000 32 0 0 3459 3490 95094897 95094866 4.680000e-05 60.2
7 TraesCS2B01G126900 chr2B 100.000 32 0 0 3544 3575 95094982 95094951 4.680000e-05 60.2
8 TraesCS2B01G126900 chr1B 90.175 2575 214 18 904 3452 17896645 17894084 0.000000e+00 3317.0
9 TraesCS2B01G126900 chr1B 89.179 2486 237 16 987 3452 18683367 18685840 0.000000e+00 3072.0
10 TraesCS2B01G126900 chr1B 88.077 2600 272 23 874 3451 18118752 18116169 0.000000e+00 3049.0
11 TraesCS2B01G126900 chr1B 91.472 2052 158 10 1406 3452 18093358 18091319 0.000000e+00 2804.0
12 TraesCS2B01G126900 chr1B 87.495 2399 276 15 943 3334 18867682 18870063 0.000000e+00 2747.0
13 TraesCS2B01G126900 chr1B 89.541 2113 200 9 1344 3452 539872556 539870461 0.000000e+00 2658.0
14 TraesCS2B01G126900 chr1B 88.554 2193 228 19 1274 3455 19075904 19073724 0.000000e+00 2638.0
15 TraesCS2B01G126900 chr1B 82.340 1761 220 55 2277 3994 17965664 17963952 0.000000e+00 1445.0
16 TraesCS2B01G126900 chr1B 94.075 827 38 6 3521 4337 18091276 18090451 0.000000e+00 1245.0
17 TraesCS2B01G126900 chr1B 93.645 834 34 9 3521 4337 18685883 18686714 0.000000e+00 1229.0
18 TraesCS2B01G126900 chr1B 92.695 835 39 9 3521 4337 18363224 18362394 0.000000e+00 1184.0
19 TraesCS2B01G126900 chr1B 92.264 349 21 3 3523 3867 539870416 539870070 1.400000e-134 490.0
20 TraesCS2B01G126900 chr1B 80.348 575 102 7 960 1525 17966256 17965684 4.010000e-115 425.0
21 TraesCS2B01G126900 chr1B 82.713 457 66 10 888 1338 539873329 539872880 1.130000e-105 394.0
22 TraesCS2B01G126900 chr1B 94.737 228 11 1 3521 3748 17894041 17893815 1.920000e-93 353.0
23 TraesCS2B01G126900 chr1B 80.405 148 15 11 3861 3994 18115778 18115631 2.760000e-17 100.0
24 TraesCS2B01G126900 chr1B 78.808 151 18 11 3858 3994 19073361 19073211 5.970000e-14 89.8
25 TraesCS2B01G126900 chr1B 94.000 50 2 1 3481 3529 18091212 18091163 1.670000e-09 75.0
26 TraesCS2B01G126900 chr1B 94.000 50 2 1 3481 3529 18363160 18363111 1.670000e-09 75.0
27 TraesCS2B01G126900 chr1B 94.000 50 2 1 3481 3529 18685947 18685996 1.670000e-09 75.0
28 TraesCS2B01G126900 chr1B 94.000 50 1 2 3474 3523 539870356 539870309 1.670000e-09 75.0
29 TraesCS2B01G126900 chr1B 92.000 50 3 1 3481 3529 17893977 17893928 7.780000e-08 69.4
30 TraesCS2B01G126900 chr1A 89.675 2489 222 8 891 3348 14577463 14579947 0.000000e+00 3140.0
31 TraesCS2B01G126900 chr1A 89.379 2448 247 10 908 3348 14584846 14587287 0.000000e+00 3068.0
32 TraesCS2B01G126900 chr1A 88.591 149 16 1 473 620 14577309 14577457 3.450000e-41 180.0
33 TraesCS2B01G126900 chr1A 91.304 46 4 0 287 332 261368702 261368657 3.620000e-06 63.9
34 TraesCS2B01G126900 chr1D 89.386 2459 242 14 904 3351 12552050 12549600 0.000000e+00 3077.0
35 TraesCS2B01G126900 chr1D 85.057 2998 359 57 960 3918 13262428 13265375 0.000000e+00 2972.0
36 TraesCS2B01G126900 chr4B 96.565 262 9 0 609 870 559129648 559129387 6.660000e-118 435.0
37 TraesCS2B01G126900 chr4B 95.472 265 12 0 606 870 410993169 410992905 1.440000e-114 424.0
38 TraesCS2B01G126900 chr4B 91.304 46 4 0 287 332 385922979 385922934 3.620000e-06 63.9
39 TraesCS2B01G126900 chr3B 96.899 258 8 0 613 870 484950506 484950249 2.400000e-117 433.0
40 TraesCS2B01G126900 chr3B 91.667 48 4 0 285 332 23694473 23694520 2.800000e-07 67.6
41 TraesCS2B01G126900 chr7B 95.865 266 10 1 605 870 726689196 726688932 3.100000e-116 429.0
42 TraesCS2B01G126900 chr7B 91.837 49 4 0 284 332 51911331 51911283 7.780000e-08 69.4
43 TraesCS2B01G126900 chr6B 96.183 262 10 0 609 870 556846127 556846388 3.100000e-116 429.0
44 TraesCS2B01G126900 chr2A 96.512 258 9 0 613 870 584517145 584517402 1.110000e-115 427.0
45 TraesCS2B01G126900 chr2A 95.489 266 12 0 605 870 438519452 438519187 4.010000e-115 425.0
46 TraesCS2B01G126900 chr4A 95.122 41 2 0 284 324 596766400 596766440 1.010000e-06 65.8
47 TraesCS2B01G126900 chr7A 91.304 46 4 0 287 332 554465534 554465489 3.620000e-06 63.9
48 TraesCS2B01G126900 chr6A 91.304 46 4 0 287 332 359051268 359051223 3.620000e-06 63.9
49 TraesCS2B01G126900 chr3A 91.304 46 4 0 287 332 51751577 51751622 3.620000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G126900 chr2B 95094104 95098440 4336 True 1656.080000 8010 97.600000 1 4337 5 chr2B.!!$R3 4336
1 TraesCS2B01G126900 chr1B 18867682 18870063 2381 False 2747.000000 2747 87.495000 943 3334 1 chr1B.!!$F1 2391
2 TraesCS2B01G126900 chr1B 18115631 18118752 3121 True 1574.500000 3049 84.241000 874 3994 2 chr1B.!!$R4 3120
3 TraesCS2B01G126900 chr1B 18683367 18686714 3347 False 1458.666667 3072 92.274667 987 4337 3 chr1B.!!$F2 3350
4 TraesCS2B01G126900 chr1B 18090451 18093358 2907 True 1374.666667 2804 93.182333 1406 4337 3 chr1B.!!$R3 2931
5 TraesCS2B01G126900 chr1B 19073211 19075904 2693 True 1363.900000 2638 83.681000 1274 3994 2 chr1B.!!$R6 2720
6 TraesCS2B01G126900 chr1B 17893815 17896645 2830 True 1246.466667 3317 92.304000 904 3748 3 chr1B.!!$R1 2844
7 TraesCS2B01G126900 chr1B 17963952 17966256 2304 True 935.000000 1445 81.344000 960 3994 2 chr1B.!!$R2 3034
8 TraesCS2B01G126900 chr1B 539870070 539873329 3259 True 904.250000 2658 89.629500 888 3867 4 chr1B.!!$R7 2979
9 TraesCS2B01G126900 chr1B 18362394 18363224 830 True 629.500000 1184 93.347500 3481 4337 2 chr1B.!!$R5 856
10 TraesCS2B01G126900 chr1A 14584846 14587287 2441 False 3068.000000 3068 89.379000 908 3348 1 chr1A.!!$F1 2440
11 TraesCS2B01G126900 chr1A 14577309 14579947 2638 False 1660.000000 3140 89.133000 473 3348 2 chr1A.!!$F2 2875
12 TraesCS2B01G126900 chr1D 12549600 12552050 2450 True 3077.000000 3077 89.386000 904 3351 1 chr1D.!!$R1 2447
13 TraesCS2B01G126900 chr1D 13262428 13265375 2947 False 2972.000000 2972 85.057000 960 3918 1 chr1D.!!$F1 2958

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 628 0.032017 ATGCTACTCCCTCCGTTCCT 60.032 55.000 0.00 0.0 0.00 3.36 F
628 629 0.683504 TGCTACTCCCTCCGTTCCTC 60.684 60.000 0.00 0.0 0.00 3.71 F
1470 1867 0.252881 TCCTCAAGGGACTCTGCCAT 60.253 55.000 0.00 0.0 38.49 4.40 F
1929 2326 4.516365 AGAAGCTGCAGGAATTTTTGAG 57.484 40.909 17.12 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1433 1830 1.149148 GAGGGTGCTGAAAACGACTC 58.851 55.000 0.00 0.0 0.00 3.36 R
1611 2008 1.659622 CCTGCTGCGCCATTTCATGA 61.660 55.000 4.18 0.0 0.00 3.07 R
2531 2928 2.651382 TGATGCATCCTCCATCTTGG 57.349 50.000 23.67 0.0 39.76 3.61 R
3499 3901 1.064758 CCCATAGGTGTTTGGCTAGCA 60.065 52.381 18.24 0.0 0.00 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 7.558161 TCATCAATTTCTAGCACATTACAGG 57.442 36.000 0.00 0.00 0.00 4.00
43 44 5.818136 TCAATTTCTAGCACATTACAGGC 57.182 39.130 0.00 0.00 0.00 4.85
44 45 5.500234 TCAATTTCTAGCACATTACAGGCT 58.500 37.500 0.00 0.00 41.51 4.58
45 46 5.586243 TCAATTTCTAGCACATTACAGGCTC 59.414 40.000 0.00 0.00 39.01 4.70
46 47 4.551702 TTTCTAGCACATTACAGGCTCA 57.448 40.909 0.00 0.00 39.01 4.26
47 48 4.551702 TTCTAGCACATTACAGGCTCAA 57.448 40.909 0.00 0.00 39.01 3.02
48 49 4.551702 TCTAGCACATTACAGGCTCAAA 57.448 40.909 0.00 0.00 39.01 2.69
49 50 5.102953 TCTAGCACATTACAGGCTCAAAT 57.897 39.130 0.00 0.00 39.01 2.32
50 51 5.500234 TCTAGCACATTACAGGCTCAAATT 58.500 37.500 0.00 0.00 39.01 1.82
51 52 4.708726 AGCACATTACAGGCTCAAATTC 57.291 40.909 0.00 0.00 30.74 2.17
52 53 4.081406 AGCACATTACAGGCTCAAATTCA 58.919 39.130 0.00 0.00 30.74 2.57
53 54 4.082571 AGCACATTACAGGCTCAAATTCAC 60.083 41.667 0.00 0.00 30.74 3.18
54 55 4.082571 GCACATTACAGGCTCAAATTCACT 60.083 41.667 0.00 0.00 0.00 3.41
55 56 5.123820 GCACATTACAGGCTCAAATTCACTA 59.876 40.000 0.00 0.00 0.00 2.74
56 57 6.183360 GCACATTACAGGCTCAAATTCACTAT 60.183 38.462 0.00 0.00 0.00 2.12
57 58 7.012327 GCACATTACAGGCTCAAATTCACTATA 59.988 37.037 0.00 0.00 0.00 1.31
58 59 8.554528 CACATTACAGGCTCAAATTCACTATAG 58.445 37.037 0.00 0.00 0.00 1.31
59 60 8.486210 ACATTACAGGCTCAAATTCACTATAGA 58.514 33.333 6.78 0.00 0.00 1.98
60 61 9.330063 CATTACAGGCTCAAATTCACTATAGAA 57.670 33.333 6.78 0.00 0.00 2.10
61 62 8.948631 TTACAGGCTCAAATTCACTATAGAAG 57.051 34.615 6.78 0.00 0.00 2.85
62 63 6.951971 ACAGGCTCAAATTCACTATAGAAGT 58.048 36.000 6.78 0.00 39.81 3.01
63 64 7.044798 ACAGGCTCAAATTCACTATAGAAGTC 58.955 38.462 6.78 0.00 35.76 3.01
64 65 6.481644 CAGGCTCAAATTCACTATAGAAGTCC 59.518 42.308 6.78 0.00 35.76 3.85
65 66 6.156949 AGGCTCAAATTCACTATAGAAGTCCA 59.843 38.462 6.78 0.00 35.76 4.02
66 67 6.995091 GGCTCAAATTCACTATAGAAGTCCAT 59.005 38.462 6.78 0.00 35.76 3.41
67 68 7.041508 GGCTCAAATTCACTATAGAAGTCCATG 60.042 40.741 6.78 0.00 35.76 3.66
68 69 7.712639 GCTCAAATTCACTATAGAAGTCCATGA 59.287 37.037 6.78 0.00 35.76 3.07
69 70 9.775854 CTCAAATTCACTATAGAAGTCCATGAT 57.224 33.333 6.78 0.00 35.76 2.45
75 76 8.737168 TCACTATAGAAGTCCATGATTTTTGG 57.263 34.615 6.78 0.00 35.76 3.28
76 77 8.328758 TCACTATAGAAGTCCATGATTTTTGGT 58.671 33.333 6.78 0.00 35.76 3.67
77 78 8.960591 CACTATAGAAGTCCATGATTTTTGGTT 58.039 33.333 6.78 0.00 35.76 3.67
78 79 8.960591 ACTATAGAAGTCCATGATTTTTGGTTG 58.039 33.333 6.78 0.00 30.33 3.77
79 80 7.781324 ATAGAAGTCCATGATTTTTGGTTGT 57.219 32.000 0.00 0.00 35.64 3.32
80 81 8.877864 ATAGAAGTCCATGATTTTTGGTTGTA 57.122 30.769 0.00 0.00 35.64 2.41
81 82 7.781324 AGAAGTCCATGATTTTTGGTTGTAT 57.219 32.000 0.00 0.00 35.64 2.29
82 83 7.830739 AGAAGTCCATGATTTTTGGTTGTATC 58.169 34.615 0.00 0.00 35.64 2.24
83 84 7.671398 AGAAGTCCATGATTTTTGGTTGTATCT 59.329 33.333 0.00 0.00 35.64 1.98
84 85 7.396540 AGTCCATGATTTTTGGTTGTATCTC 57.603 36.000 0.00 0.00 35.64 2.75
85 86 6.947733 AGTCCATGATTTTTGGTTGTATCTCA 59.052 34.615 0.00 0.00 35.64 3.27
86 87 7.029563 GTCCATGATTTTTGGTTGTATCTCAC 58.970 38.462 0.00 0.00 35.64 3.51
87 88 6.718912 TCCATGATTTTTGGTTGTATCTCACA 59.281 34.615 0.00 0.00 35.64 3.58
88 89 7.396907 TCCATGATTTTTGGTTGTATCTCACAT 59.603 33.333 0.00 0.00 33.13 3.21
89 90 8.685427 CCATGATTTTTGGTTGTATCTCACATA 58.315 33.333 0.00 0.00 36.90 2.29
95 96 9.522804 TTTTTGGTTGTATCTCACATAAAACAC 57.477 29.630 0.00 0.00 36.90 3.32
96 97 7.809546 TTGGTTGTATCTCACATAAAACACA 57.190 32.000 0.00 0.00 36.90 3.72
97 98 7.994425 TGGTTGTATCTCACATAAAACACAT 57.006 32.000 0.00 0.00 36.90 3.21
98 99 8.402798 TGGTTGTATCTCACATAAAACACATT 57.597 30.769 0.00 0.00 36.90 2.71
99 100 8.855110 TGGTTGTATCTCACATAAAACACATTT 58.145 29.630 0.00 0.00 36.90 2.32
100 101 9.341899 GGTTGTATCTCACATAAAACACATTTC 57.658 33.333 0.00 0.00 36.90 2.17
101 102 9.891828 GTTGTATCTCACATAAAACACATTTCA 57.108 29.630 0.00 0.00 36.90 2.69
137 138 9.778741 TTGACATAAATGAACTATACATCCCTC 57.221 33.333 0.00 0.00 0.00 4.30
138 139 9.159254 TGACATAAATGAACTATACATCCCTCT 57.841 33.333 0.00 0.00 0.00 3.69
139 140 9.429359 GACATAAATGAACTATACATCCCTCTG 57.571 37.037 0.00 0.00 0.00 3.35
140 141 8.938883 ACATAAATGAACTATACATCCCTCTGT 58.061 33.333 0.00 0.00 0.00 3.41
146 147 9.775539 ATGAACTATACATCCCTCTGTATATGT 57.224 33.333 4.83 0.00 41.42 2.29
147 148 9.025041 TGAACTATACATCCCTCTGTATATGTG 57.975 37.037 4.83 0.00 41.42 3.21
148 149 8.958060 AACTATACATCCCTCTGTATATGTGT 57.042 34.615 4.83 0.00 41.42 3.72
194 195 9.781834 ACTTAAAAGGTTTGCTTTTTATTTTGC 57.218 25.926 0.00 0.00 36.49 3.68
195 196 9.780413 CTTAAAAGGTTTGCTTTTTATTTTGCA 57.220 25.926 0.00 0.00 36.49 4.08
206 207 9.943163 TGCTTTTTATTTTGCAAAATTTAGGAC 57.057 25.926 35.18 22.85 39.24 3.85
210 211 9.838339 TTTTATTTTGCAAAATTTAGGACTCCA 57.162 25.926 35.18 15.61 39.24 3.86
216 217 7.510549 TGCAAAATTTAGGACTCCATATAGC 57.489 36.000 0.00 0.00 0.00 2.97
217 218 6.490040 TGCAAAATTTAGGACTCCATATAGCC 59.510 38.462 0.00 0.00 0.00 3.93
218 219 6.071896 GCAAAATTTAGGACTCCATATAGCCC 60.072 42.308 0.00 0.00 0.00 5.19
219 220 6.780198 AAATTTAGGACTCCATATAGCCCA 57.220 37.500 0.00 0.00 0.00 5.36
220 221 6.380079 AATTTAGGACTCCATATAGCCCAG 57.620 41.667 0.00 0.00 0.00 4.45
221 222 2.334006 AGGACTCCATATAGCCCAGG 57.666 55.000 0.00 0.00 0.00 4.45
222 223 1.795786 AGGACTCCATATAGCCCAGGA 59.204 52.381 0.00 0.00 0.00 3.86
225 226 1.649321 CTCCATATAGCCCAGGAGCA 58.351 55.000 0.00 0.00 40.98 4.26
226 227 1.554160 CTCCATATAGCCCAGGAGCAG 59.446 57.143 0.00 0.00 40.98 4.24
227 228 1.149923 TCCATATAGCCCAGGAGCAGA 59.850 52.381 3.08 0.00 34.23 4.26
228 229 1.980765 CCATATAGCCCAGGAGCAGAA 59.019 52.381 3.08 0.00 34.23 3.02
229 230 2.373169 CCATATAGCCCAGGAGCAGAAA 59.627 50.000 3.08 0.00 34.23 2.52
230 231 3.181440 CCATATAGCCCAGGAGCAGAAAA 60.181 47.826 3.08 0.00 34.23 2.29
231 232 4.508047 CCATATAGCCCAGGAGCAGAAAAT 60.508 45.833 3.08 0.00 34.23 1.82
232 233 2.717639 TAGCCCAGGAGCAGAAAATC 57.282 50.000 3.08 0.00 34.23 2.17
233 234 0.998145 AGCCCAGGAGCAGAAAATCT 59.002 50.000 3.08 0.00 34.23 2.40
234 235 1.357079 AGCCCAGGAGCAGAAAATCTT 59.643 47.619 3.08 0.00 34.23 2.40
235 236 1.747924 GCCCAGGAGCAGAAAATCTTC 59.252 52.381 0.00 0.00 0.00 2.87
236 237 2.881403 GCCCAGGAGCAGAAAATCTTCA 60.881 50.000 0.00 0.00 33.64 3.02
237 238 2.751806 CCCAGGAGCAGAAAATCTTCAC 59.248 50.000 0.00 0.00 33.64 3.18
238 239 3.560882 CCCAGGAGCAGAAAATCTTCACT 60.561 47.826 0.00 0.00 33.64 3.41
239 240 3.688673 CCAGGAGCAGAAAATCTTCACTC 59.311 47.826 0.00 0.00 36.77 3.51
241 242 3.013219 GGAGCAGAAAATCTTCACTCCC 58.987 50.000 8.88 0.00 44.15 4.30
242 243 3.308046 GGAGCAGAAAATCTTCACTCCCT 60.308 47.826 8.88 0.00 44.15 4.20
243 244 3.938334 GAGCAGAAAATCTTCACTCCCTC 59.062 47.826 0.00 0.00 33.82 4.30
244 245 3.013219 GCAGAAAATCTTCACTCCCTCC 58.987 50.000 0.00 0.00 33.64 4.30
245 246 3.308046 GCAGAAAATCTTCACTCCCTCCT 60.308 47.826 0.00 0.00 33.64 3.69
246 247 4.512484 CAGAAAATCTTCACTCCCTCCTC 58.488 47.826 0.00 0.00 33.64 3.71
247 248 4.019860 CAGAAAATCTTCACTCCCTCCTCA 60.020 45.833 0.00 0.00 33.64 3.86
248 249 4.599241 AGAAAATCTTCACTCCCTCCTCAA 59.401 41.667 0.00 0.00 33.64 3.02
249 250 5.073691 AGAAAATCTTCACTCCCTCCTCAAA 59.926 40.000 0.00 0.00 33.64 2.69
250 251 5.527026 AAATCTTCACTCCCTCCTCAAAT 57.473 39.130 0.00 0.00 0.00 2.32
251 252 3.988976 TCTTCACTCCCTCCTCAAATG 57.011 47.619 0.00 0.00 0.00 2.32
252 253 3.251484 TCTTCACTCCCTCCTCAAATGT 58.749 45.455 0.00 0.00 0.00 2.71
253 254 4.425772 TCTTCACTCCCTCCTCAAATGTA 58.574 43.478 0.00 0.00 0.00 2.29
254 255 4.467795 TCTTCACTCCCTCCTCAAATGTAG 59.532 45.833 0.00 0.00 0.00 2.74
255 256 3.791320 TCACTCCCTCCTCAAATGTAGT 58.209 45.455 0.00 0.00 0.00 2.73
256 257 4.942944 TCACTCCCTCCTCAAATGTAGTA 58.057 43.478 0.00 0.00 0.00 1.82
257 258 4.956700 TCACTCCCTCCTCAAATGTAGTAG 59.043 45.833 0.00 0.00 0.00 2.57
258 259 3.707102 ACTCCCTCCTCAAATGTAGTAGC 59.293 47.826 0.00 0.00 0.00 3.58
259 260 3.964031 CTCCCTCCTCAAATGTAGTAGCT 59.036 47.826 0.00 0.00 0.00 3.32
260 261 3.706594 TCCCTCCTCAAATGTAGTAGCTG 59.293 47.826 0.00 0.00 0.00 4.24
261 262 3.452627 CCCTCCTCAAATGTAGTAGCTGT 59.547 47.826 0.00 0.00 0.00 4.40
262 263 4.442192 CCCTCCTCAAATGTAGTAGCTGTC 60.442 50.000 0.00 0.00 0.00 3.51
263 264 4.160439 CCTCCTCAAATGTAGTAGCTGTCA 59.840 45.833 0.00 0.00 0.00 3.58
264 265 5.337571 CCTCCTCAAATGTAGTAGCTGTCAA 60.338 44.000 0.00 0.00 0.00 3.18
265 266 6.109156 TCCTCAAATGTAGTAGCTGTCAAA 57.891 37.500 0.00 0.00 0.00 2.69
266 267 6.711277 TCCTCAAATGTAGTAGCTGTCAAAT 58.289 36.000 0.00 0.00 0.00 2.32
267 268 7.168219 TCCTCAAATGTAGTAGCTGTCAAATT 58.832 34.615 0.00 0.00 0.00 1.82
268 269 7.665559 TCCTCAAATGTAGTAGCTGTCAAATTT 59.334 33.333 0.00 0.00 0.00 1.82
269 270 7.965107 CCTCAAATGTAGTAGCTGTCAAATTTC 59.035 37.037 0.00 0.00 0.00 2.17
270 271 8.389779 TCAAATGTAGTAGCTGTCAAATTTCA 57.610 30.769 0.00 0.00 0.00 2.69
271 272 8.845227 TCAAATGTAGTAGCTGTCAAATTTCAA 58.155 29.630 0.00 0.00 0.00 2.69
272 273 9.462174 CAAATGTAGTAGCTGTCAAATTTCAAA 57.538 29.630 0.00 0.00 0.00 2.69
274 275 9.683069 AATGTAGTAGCTGTCAAATTTCAAAAG 57.317 29.630 0.00 0.00 0.00 2.27
275 276 8.445275 TGTAGTAGCTGTCAAATTTCAAAAGA 57.555 30.769 0.00 0.00 0.00 2.52
276 277 9.066892 TGTAGTAGCTGTCAAATTTCAAAAGAT 57.933 29.630 0.00 0.00 0.00 2.40
277 278 9.548208 GTAGTAGCTGTCAAATTTCAAAAGATC 57.452 33.333 0.00 0.00 0.00 2.75
278 279 8.401490 AGTAGCTGTCAAATTTCAAAAGATCT 57.599 30.769 0.00 0.00 0.00 2.75
279 280 8.510505 AGTAGCTGTCAAATTTCAAAAGATCTC 58.489 33.333 0.00 0.00 0.00 2.75
280 281 7.281040 AGCTGTCAAATTTCAAAAGATCTCA 57.719 32.000 0.00 0.00 0.00 3.27
281 282 7.144000 AGCTGTCAAATTTCAAAAGATCTCAC 58.856 34.615 0.00 0.00 0.00 3.51
282 283 7.014038 AGCTGTCAAATTTCAAAAGATCTCACT 59.986 33.333 0.00 0.00 0.00 3.41
283 284 7.650903 GCTGTCAAATTTCAAAAGATCTCACTT 59.349 33.333 0.00 0.00 0.00 3.16
284 285 9.525409 CTGTCAAATTTCAAAAGATCTCACTTT 57.475 29.630 0.00 0.00 41.09 2.66
285 286 9.874205 TGTCAAATTTCAAAAGATCTCACTTTT 57.126 25.926 0.00 0.00 46.57 2.27
289 290 9.481340 AAATTTCAAAAGATCTCACTTTTAGGC 57.519 29.630 0.00 0.00 44.73 3.93
290 291 6.575162 TTCAAAAGATCTCACTTTTAGGCC 57.425 37.500 0.00 0.00 44.73 5.19
291 292 5.630121 TCAAAAGATCTCACTTTTAGGCCA 58.370 37.500 5.01 0.00 44.73 5.36
292 293 5.473504 TCAAAAGATCTCACTTTTAGGCCAC 59.526 40.000 5.01 0.00 44.73 5.01
293 294 3.636153 AGATCTCACTTTTAGGCCACC 57.364 47.619 5.01 0.00 0.00 4.61
294 295 3.185455 AGATCTCACTTTTAGGCCACCT 58.815 45.455 5.01 0.00 37.71 4.00
295 296 4.362677 AGATCTCACTTTTAGGCCACCTA 58.637 43.478 5.01 0.00 34.61 3.08
296 297 4.971924 AGATCTCACTTTTAGGCCACCTAT 59.028 41.667 5.01 0.00 35.87 2.57
297 298 4.487714 TCTCACTTTTAGGCCACCTATG 57.512 45.455 5.01 0.00 35.87 2.23
309 310 3.669939 CCACCTATGGTTTGGAGGAAT 57.330 47.619 0.00 0.00 41.64 3.01
310 311 3.981212 CCACCTATGGTTTGGAGGAATT 58.019 45.455 0.00 0.00 41.64 2.17
311 312 4.352893 CCACCTATGGTTTGGAGGAATTT 58.647 43.478 0.00 0.00 41.64 1.82
312 313 4.777366 CCACCTATGGTTTGGAGGAATTTT 59.223 41.667 0.00 0.00 41.64 1.82
313 314 5.955355 CCACCTATGGTTTGGAGGAATTTTA 59.045 40.000 0.00 0.00 41.64 1.52
314 315 6.611236 CCACCTATGGTTTGGAGGAATTTTAT 59.389 38.462 0.00 0.00 41.64 1.40
315 316 7.782644 CCACCTATGGTTTGGAGGAATTTTATA 59.217 37.037 0.00 0.00 41.64 0.98
316 317 8.850156 CACCTATGGTTTGGAGGAATTTTATAG 58.150 37.037 0.00 0.00 31.02 1.31
317 318 8.004801 ACCTATGGTTTGGAGGAATTTTATAGG 58.995 37.037 0.00 0.00 39.36 2.57
318 319 8.224720 CCTATGGTTTGGAGGAATTTTATAGGA 58.775 37.037 0.00 0.00 36.93 2.94
319 320 9.813826 CTATGGTTTGGAGGAATTTTATAGGAT 57.186 33.333 0.00 0.00 0.00 3.24
321 322 8.909423 TGGTTTGGAGGAATTTTATAGGATTT 57.091 30.769 0.00 0.00 0.00 2.17
322 323 9.332713 TGGTTTGGAGGAATTTTATAGGATTTT 57.667 29.630 0.00 0.00 0.00 1.82
323 324 9.817809 GGTTTGGAGGAATTTTATAGGATTTTC 57.182 33.333 0.00 0.00 0.00 2.29
324 325 9.516314 GTTTGGAGGAATTTTATAGGATTTTCG 57.484 33.333 0.00 0.00 0.00 3.46
325 326 8.817092 TTGGAGGAATTTTATAGGATTTTCGT 57.183 30.769 0.00 0.00 0.00 3.85
326 327 9.908747 TTGGAGGAATTTTATAGGATTTTCGTA 57.091 29.630 0.00 0.00 0.00 3.43
370 371 8.622948 AGTAGACTTTCAACCTTTAGATTTGG 57.377 34.615 0.00 0.00 0.00 3.28
371 372 6.901081 AGACTTTCAACCTTTAGATTTGGG 57.099 37.500 0.00 0.00 0.00 4.12
372 373 6.610830 AGACTTTCAACCTTTAGATTTGGGA 58.389 36.000 0.00 0.00 0.00 4.37
373 374 6.490381 AGACTTTCAACCTTTAGATTTGGGAC 59.510 38.462 0.00 0.00 0.00 4.46
374 375 6.133356 ACTTTCAACCTTTAGATTTGGGACA 58.867 36.000 0.00 0.00 0.00 4.02
386 387 1.773635 TGGGACAACATGGGAAGGG 59.226 57.895 0.00 0.00 31.92 3.95
387 388 1.071314 TGGGACAACATGGGAAGGGT 61.071 55.000 0.00 0.00 31.92 4.34
388 389 0.114364 GGGACAACATGGGAAGGGTT 59.886 55.000 0.00 0.00 0.00 4.11
389 390 1.482365 GGGACAACATGGGAAGGGTTT 60.482 52.381 0.00 0.00 0.00 3.27
390 391 1.893137 GGACAACATGGGAAGGGTTTC 59.107 52.381 0.00 0.00 0.00 2.78
391 392 2.593026 GACAACATGGGAAGGGTTTCA 58.407 47.619 0.00 0.00 34.90 2.69
392 393 2.296190 GACAACATGGGAAGGGTTTCAC 59.704 50.000 0.00 0.00 37.24 3.18
393 394 1.269448 CAACATGGGAAGGGTTTCACG 59.731 52.381 0.00 0.00 39.70 4.35
394 395 0.251165 ACATGGGAAGGGTTTCACGG 60.251 55.000 0.00 0.00 39.70 4.94
395 396 1.304134 ATGGGAAGGGTTTCACGGC 60.304 57.895 0.00 0.00 39.70 5.68
396 397 3.053896 GGGAAGGGTTTCACGGCG 61.054 66.667 4.80 4.80 34.90 6.46
397 398 3.733960 GGAAGGGTTTCACGGCGC 61.734 66.667 6.90 0.00 34.90 6.53
398 399 2.975799 GAAGGGTTTCACGGCGCA 60.976 61.111 10.83 0.00 33.38 6.09
399 400 2.517402 AAGGGTTTCACGGCGCAA 60.517 55.556 10.83 0.00 0.00 4.85
400 401 2.065906 GAAGGGTTTCACGGCGCAAA 62.066 55.000 10.83 3.24 33.38 3.68
401 402 1.668101 AAGGGTTTCACGGCGCAAAA 61.668 50.000 10.83 4.82 0.00 2.44
402 403 1.006688 GGGTTTCACGGCGCAAAAT 60.007 52.632 10.83 0.00 0.00 1.82
403 404 0.598942 GGGTTTCACGGCGCAAAATT 60.599 50.000 10.83 0.00 0.00 1.82
404 405 0.781787 GGTTTCACGGCGCAAAATTC 59.218 50.000 10.83 1.42 0.00 2.17
405 406 1.482278 GTTTCACGGCGCAAAATTCA 58.518 45.000 10.83 0.00 0.00 2.57
406 407 1.189227 GTTTCACGGCGCAAAATTCAC 59.811 47.619 10.83 0.00 0.00 3.18
407 408 0.665835 TTCACGGCGCAAAATTCACT 59.334 45.000 10.83 0.00 0.00 3.41
408 409 1.514003 TCACGGCGCAAAATTCACTA 58.486 45.000 10.83 0.00 0.00 2.74
409 410 1.195900 TCACGGCGCAAAATTCACTAC 59.804 47.619 10.83 0.00 0.00 2.73
410 411 0.519961 ACGGCGCAAAATTCACTACC 59.480 50.000 10.83 0.00 0.00 3.18
411 412 0.802494 CGGCGCAAAATTCACTACCT 59.198 50.000 10.83 0.00 0.00 3.08
412 413 2.004017 CGGCGCAAAATTCACTACCTA 58.996 47.619 10.83 0.00 0.00 3.08
413 414 2.030457 CGGCGCAAAATTCACTACCTAG 59.970 50.000 10.83 0.00 0.00 3.02
414 415 3.267483 GGCGCAAAATTCACTACCTAGA 58.733 45.455 10.83 0.00 0.00 2.43
415 416 3.877508 GGCGCAAAATTCACTACCTAGAT 59.122 43.478 10.83 0.00 0.00 1.98
416 417 4.260784 GGCGCAAAATTCACTACCTAGATG 60.261 45.833 10.83 0.00 0.00 2.90
417 418 4.786609 GCGCAAAATTCACTACCTAGATGC 60.787 45.833 0.30 0.00 0.00 3.91
418 419 4.572389 CGCAAAATTCACTACCTAGATGCT 59.428 41.667 0.00 0.00 0.00 3.79
419 420 5.277058 CGCAAAATTCACTACCTAGATGCTC 60.277 44.000 0.00 0.00 0.00 4.26
420 421 5.586243 GCAAAATTCACTACCTAGATGCTCA 59.414 40.000 0.00 0.00 0.00 4.26
421 422 6.094048 GCAAAATTCACTACCTAGATGCTCAA 59.906 38.462 0.00 0.00 0.00 3.02
422 423 7.362056 GCAAAATTCACTACCTAGATGCTCAAA 60.362 37.037 0.00 0.00 0.00 2.69
423 424 7.856145 AAATTCACTACCTAGATGCTCAAAG 57.144 36.000 0.00 0.00 0.00 2.77
424 425 6.798427 ATTCACTACCTAGATGCTCAAAGA 57.202 37.500 0.00 0.00 0.00 2.52
425 426 6.605471 TTCACTACCTAGATGCTCAAAGAA 57.395 37.500 0.00 0.00 0.00 2.52
426 427 5.967088 TCACTACCTAGATGCTCAAAGAAC 58.033 41.667 0.00 0.00 0.00 3.01
427 428 5.717178 TCACTACCTAGATGCTCAAAGAACT 59.283 40.000 0.00 0.00 0.00 3.01
428 429 6.890268 TCACTACCTAGATGCTCAAAGAACTA 59.110 38.462 0.00 0.00 0.00 2.24
429 430 7.396339 TCACTACCTAGATGCTCAAAGAACTAA 59.604 37.037 0.00 0.00 0.00 2.24
430 431 8.035394 CACTACCTAGATGCTCAAAGAACTAAA 58.965 37.037 0.00 0.00 0.00 1.85
431 432 8.763601 ACTACCTAGATGCTCAAAGAACTAAAT 58.236 33.333 0.00 0.00 0.00 1.40
432 433 9.255304 CTACCTAGATGCTCAAAGAACTAAATC 57.745 37.037 0.00 0.00 0.00 2.17
433 434 7.856415 ACCTAGATGCTCAAAGAACTAAATCT 58.144 34.615 0.00 0.00 0.00 2.40
434 435 8.325046 ACCTAGATGCTCAAAGAACTAAATCTT 58.675 33.333 0.00 0.00 41.34 2.40
435 436 9.823647 CCTAGATGCTCAAAGAACTAAATCTTA 57.176 33.333 0.00 0.00 38.69 2.10
496 497 7.650834 TTTTTATGGCTTTGCAGTACATTTC 57.349 32.000 0.00 0.00 0.00 2.17
499 500 5.567138 ATGGCTTTGCAGTACATTTCTAC 57.433 39.130 0.00 0.00 0.00 2.59
511 512 2.226437 ACATTTCTACGGCTTGCAACTG 59.774 45.455 0.00 0.41 0.00 3.16
517 518 4.320023 TCTACGGCTTGCAACTGAATTTA 58.680 39.130 12.81 0.00 0.00 1.40
522 523 6.630071 ACGGCTTGCAACTGAATTTATATTT 58.370 32.000 12.81 0.00 0.00 1.40
530 531 9.421806 TGCAACTGAATTTATATTTTTGGTCTG 57.578 29.630 0.00 0.00 0.00 3.51
602 603 8.276252 TGAGACCATAACTTAAATTTACCTGC 57.724 34.615 0.00 0.00 0.00 4.85
625 626 2.693267 AAATGCTACTCCCTCCGTTC 57.307 50.000 0.00 0.00 0.00 3.95
626 627 0.831307 AATGCTACTCCCTCCGTTCC 59.169 55.000 0.00 0.00 0.00 3.62
627 628 0.032017 ATGCTACTCCCTCCGTTCCT 60.032 55.000 0.00 0.00 0.00 3.36
628 629 0.683504 TGCTACTCCCTCCGTTCCTC 60.684 60.000 0.00 0.00 0.00 3.71
629 630 0.683504 GCTACTCCCTCCGTTCCTCA 60.684 60.000 0.00 0.00 0.00 3.86
630 631 1.848652 CTACTCCCTCCGTTCCTCAA 58.151 55.000 0.00 0.00 0.00 3.02
631 632 2.389715 CTACTCCCTCCGTTCCTCAAT 58.610 52.381 0.00 0.00 0.00 2.57
632 633 2.544844 ACTCCCTCCGTTCCTCAATA 57.455 50.000 0.00 0.00 0.00 1.90
633 634 3.047695 ACTCCCTCCGTTCCTCAATAT 57.952 47.619 0.00 0.00 0.00 1.28
634 635 4.194678 ACTCCCTCCGTTCCTCAATATA 57.805 45.455 0.00 0.00 0.00 0.86
635 636 4.553678 ACTCCCTCCGTTCCTCAATATAA 58.446 43.478 0.00 0.00 0.00 0.98
636 637 4.589374 ACTCCCTCCGTTCCTCAATATAAG 59.411 45.833 0.00 0.00 0.00 1.73
637 638 3.901844 TCCCTCCGTTCCTCAATATAAGG 59.098 47.826 0.00 0.00 35.05 2.69
638 639 3.008049 CCCTCCGTTCCTCAATATAAGGG 59.992 52.174 4.64 0.00 35.34 3.95
639 640 3.008049 CCTCCGTTCCTCAATATAAGGGG 59.992 52.174 4.64 0.00 34.46 4.79
640 641 3.646637 CTCCGTTCCTCAATATAAGGGGT 59.353 47.826 4.64 0.00 34.46 4.95
641 642 4.818447 TCCGTTCCTCAATATAAGGGGTA 58.182 43.478 4.64 0.00 34.46 3.69
642 643 5.408824 TCCGTTCCTCAATATAAGGGGTAT 58.591 41.667 4.64 0.00 34.46 2.73
643 644 5.847817 TCCGTTCCTCAATATAAGGGGTATT 59.152 40.000 4.64 0.00 34.46 1.89
644 645 7.018150 TCCGTTCCTCAATATAAGGGGTATTA 58.982 38.462 4.64 0.00 34.46 0.98
645 646 7.681168 TCCGTTCCTCAATATAAGGGGTATTAT 59.319 37.037 4.64 0.00 34.46 1.28
646 647 8.326529 CCGTTCCTCAATATAAGGGGTATTATT 58.673 37.037 4.64 0.00 34.46 1.40
647 648 9.734984 CGTTCCTCAATATAAGGGGTATTATTT 57.265 33.333 4.64 0.00 34.46 1.40
812 813 8.791355 ATATTTCGTTGTGAAGTTGGTTAAAC 57.209 30.769 0.00 0.00 37.99 2.01
813 814 5.624344 TTCGTTGTGAAGTTGGTTAAACA 57.376 34.783 0.00 0.00 41.61 2.83
814 815 5.821516 TCGTTGTGAAGTTGGTTAAACAT 57.178 34.783 0.00 0.00 41.61 2.71
815 816 6.922247 TCGTTGTGAAGTTGGTTAAACATA 57.078 33.333 0.00 0.00 41.61 2.29
816 817 6.950545 TCGTTGTGAAGTTGGTTAAACATAG 58.049 36.000 0.00 0.00 41.61 2.23
817 818 6.762187 TCGTTGTGAAGTTGGTTAAACATAGA 59.238 34.615 0.00 0.00 41.61 1.98
818 819 6.849305 CGTTGTGAAGTTGGTTAAACATAGAC 59.151 38.462 0.00 0.00 41.61 2.59
819 820 7.466185 CGTTGTGAAGTTGGTTAAACATAGACA 60.466 37.037 0.00 0.00 41.61 3.41
820 821 7.867305 TGTGAAGTTGGTTAAACATAGACAA 57.133 32.000 0.00 0.00 41.61 3.18
821 822 7.699566 TGTGAAGTTGGTTAAACATAGACAAC 58.300 34.615 0.00 0.00 41.61 3.32
822 823 7.337184 TGTGAAGTTGGTTAAACATAGACAACA 59.663 33.333 0.00 0.00 41.61 3.33
823 824 7.855904 GTGAAGTTGGTTAAACATAGACAACAG 59.144 37.037 0.00 0.00 41.61 3.16
824 825 7.554835 TGAAGTTGGTTAAACATAGACAACAGT 59.445 33.333 0.00 0.00 41.61 3.55
825 826 7.875327 AGTTGGTTAAACATAGACAACAGTT 57.125 32.000 0.00 0.00 41.61 3.16
826 827 7.703328 AGTTGGTTAAACATAGACAACAGTTG 58.297 34.615 12.03 12.03 41.61 3.16
827 828 7.554835 AGTTGGTTAAACATAGACAACAGTTGA 59.445 33.333 20.56 0.00 41.61 3.18
828 829 7.254227 TGGTTAAACATAGACAACAGTTGAC 57.746 36.000 20.56 13.83 0.00 3.18
829 830 6.261381 TGGTTAAACATAGACAACAGTTGACC 59.739 38.462 20.56 12.43 34.35 4.02
830 831 6.485648 GGTTAAACATAGACAACAGTTGACCT 59.514 38.462 20.56 16.77 32.62 3.85
831 832 7.012989 GGTTAAACATAGACAACAGTTGACCTT 59.987 37.037 20.56 1.75 32.62 3.50
832 833 8.403236 GTTAAACATAGACAACAGTTGACCTTT 58.597 33.333 20.56 10.62 0.00 3.11
833 834 7.404671 AAACATAGACAACAGTTGACCTTTT 57.595 32.000 20.56 10.29 0.00 2.27
834 835 6.377327 ACATAGACAACAGTTGACCTTTTG 57.623 37.500 20.56 16.31 36.98 2.44
835 836 6.119536 ACATAGACAACAGTTGACCTTTTGA 58.880 36.000 20.56 2.45 34.98 2.69
836 837 6.601613 ACATAGACAACAGTTGACCTTTTGAA 59.398 34.615 20.56 2.12 34.98 2.69
837 838 5.975693 AGACAACAGTTGACCTTTTGAAA 57.024 34.783 20.56 0.00 34.98 2.69
838 839 6.339587 AGACAACAGTTGACCTTTTGAAAA 57.660 33.333 20.56 0.00 34.98 2.29
839 840 6.754193 AGACAACAGTTGACCTTTTGAAAAA 58.246 32.000 20.56 0.00 34.98 1.94
840 841 6.645003 AGACAACAGTTGACCTTTTGAAAAAC 59.355 34.615 20.56 0.00 34.98 2.43
841 842 6.521162 ACAACAGTTGACCTTTTGAAAAACT 58.479 32.000 20.56 0.00 34.98 2.66
842 843 7.662897 ACAACAGTTGACCTTTTGAAAAACTA 58.337 30.769 20.56 0.00 34.98 2.24
843 844 8.145122 ACAACAGTTGACCTTTTGAAAAACTAA 58.855 29.630 20.56 0.00 34.98 2.24
844 845 9.150348 CAACAGTTGACCTTTTGAAAAACTAAT 57.850 29.630 7.61 0.00 33.51 1.73
846 847 9.797556 ACAGTTGACCTTTTGAAAAACTAATAC 57.202 29.630 0.00 0.00 0.00 1.89
847 848 9.796120 CAGTTGACCTTTTGAAAAACTAATACA 57.204 29.630 0.00 0.00 0.00 2.29
848 849 9.797556 AGTTGACCTTTTGAAAAACTAATACAC 57.202 29.630 0.00 0.00 0.00 2.90
849 850 9.027129 GTTGACCTTTTGAAAAACTAATACACC 57.973 33.333 0.00 0.00 0.00 4.16
850 851 8.528044 TGACCTTTTGAAAAACTAATACACCT 57.472 30.769 0.00 0.00 0.00 4.00
851 852 8.973182 TGACCTTTTGAAAAACTAATACACCTT 58.027 29.630 0.00 0.00 0.00 3.50
868 869 6.170846 ACACCTTATATTTAGGAACGGAGG 57.829 41.667 9.82 0.00 36.58 4.30
869 870 5.071384 ACACCTTATATTTAGGAACGGAGGG 59.929 44.000 9.82 0.00 36.58 4.30
870 871 5.071384 CACCTTATATTTAGGAACGGAGGGT 59.929 44.000 9.82 0.00 36.58 4.34
871 872 6.268387 CACCTTATATTTAGGAACGGAGGGTA 59.732 42.308 9.82 0.00 36.58 3.69
872 873 6.268617 ACCTTATATTTAGGAACGGAGGGTAC 59.731 42.308 9.82 0.00 36.58 3.34
883 884 3.294214 ACGGAGGGTACGATAACTGAAT 58.706 45.455 0.00 0.00 34.93 2.57
1118 1197 4.524318 CACGGAGCGGGCGGTATT 62.524 66.667 0.00 0.00 0.00 1.89
1212 1291 5.086104 AGCGCTCCTTGAATAACTTTCTA 57.914 39.130 2.64 0.00 0.00 2.10
1216 1295 6.273825 CGCTCCTTGAATAACTTTCTAGCTA 58.726 40.000 0.00 0.00 0.00 3.32
1294 1373 1.004918 CTCTTCGGCCGTTTGTCCT 60.005 57.895 27.15 0.00 0.00 3.85
1470 1867 0.252881 TCCTCAAGGGACTCTGCCAT 60.253 55.000 0.00 0.00 38.49 4.40
1929 2326 4.516365 AGAAGCTGCAGGAATTTTTGAG 57.484 40.909 17.12 0.00 0.00 3.02
2154 2551 5.371115 TCTTTAAAGGAATGCGGAAACAG 57.629 39.130 15.13 0.00 0.00 3.16
2302 2699 7.775093 CAGTTGTTTATCATTCCCTAATCCAGA 59.225 37.037 0.00 0.00 0.00 3.86
2325 2722 6.015434 AGAGTTTTTGTACACATGGGGATTTC 60.015 38.462 0.00 0.00 0.00 2.17
2388 2785 5.047235 AGGTATGCGTCCTCCTGATATTAAC 60.047 44.000 0.00 0.00 0.00 2.01
2531 2928 3.413327 TCGATGGATACTGCCTAGTCTC 58.587 50.000 0.00 0.00 38.36 3.36
3381 3783 2.910737 TTGCTTGCCTAGGCCTGCT 61.911 57.895 33.30 0.00 41.09 4.24
3416 3818 6.743110 TCTGCTTGTACAACAAATGCATTTA 58.257 32.000 23.69 5.92 38.19 1.40
3452 3854 9.816354 AGAAGAAATTCACTATAGAAGAAGCTC 57.184 33.333 6.78 10.04 0.00 4.09
3453 3855 9.593134 GAAGAAATTCACTATAGAAGAAGCTCA 57.407 33.333 6.78 0.00 0.00 4.26
3454 3856 9.598517 AAGAAATTCACTATAGAAGAAGCTCAG 57.401 33.333 6.78 0.00 0.00 3.35
3456 3858 9.593134 GAAATTCACTATAGAAGAAGCTCAGAA 57.407 33.333 6.78 0.00 0.00 3.02
3457 3859 8.940768 AATTCACTATAGAAGAAGCTCAGAAC 57.059 34.615 6.78 0.00 0.00 3.01
3459 3861 7.468141 TCACTATAGAAGAAGCTCAGAACAA 57.532 36.000 6.78 0.00 0.00 2.83
3460 3862 7.896811 TCACTATAGAAGAAGCTCAGAACAAA 58.103 34.615 6.78 0.00 0.00 2.83
3461 3863 7.815068 TCACTATAGAAGAAGCTCAGAACAAAC 59.185 37.037 6.78 0.00 0.00 2.93
3462 3864 7.600375 CACTATAGAAGAAGCTCAGAACAAACA 59.400 37.037 6.78 0.00 0.00 2.83
3463 3865 8.150945 ACTATAGAAGAAGCTCAGAACAAACAA 58.849 33.333 6.78 0.00 0.00 2.83
3464 3866 7.807977 ATAGAAGAAGCTCAGAACAAACAAA 57.192 32.000 0.00 0.00 0.00 2.83
3465 3867 6.129053 AGAAGAAGCTCAGAACAAACAAAG 57.871 37.500 0.00 0.00 0.00 2.77
3466 3868 4.298744 AGAAGCTCAGAACAAACAAAGC 57.701 40.909 0.00 0.00 0.00 3.51
3467 3869 3.950395 AGAAGCTCAGAACAAACAAAGCT 59.050 39.130 0.00 0.00 41.60 3.74
3470 3872 3.696051 AGCTCAGAACAAACAAAGCTGAA 59.304 39.130 0.00 0.00 38.58 3.02
3472 3874 4.678742 GCTCAGAACAAACAAAGCTGAATC 59.321 41.667 0.00 0.00 35.43 2.52
3477 3879 5.812127 AGAACAAACAAAGCTGAATCCAAAC 59.188 36.000 0.00 0.00 0.00 2.93
3478 3880 5.343307 ACAAACAAAGCTGAATCCAAACT 57.657 34.783 0.00 0.00 0.00 2.66
3479 3881 5.733676 ACAAACAAAGCTGAATCCAAACTT 58.266 33.333 0.00 0.00 0.00 2.66
3482 3884 7.821846 ACAAACAAAGCTGAATCCAAACTTAAA 59.178 29.630 0.00 0.00 0.00 1.52
3483 3885 7.770801 AACAAAGCTGAATCCAAACTTAAAC 57.229 32.000 0.00 0.00 0.00 2.01
3484 3886 6.872920 ACAAAGCTGAATCCAAACTTAAACA 58.127 32.000 0.00 0.00 0.00 2.83
3486 3888 6.959639 AAGCTGAATCCAAACTTAAACAGA 57.040 33.333 0.00 0.00 0.00 3.41
3487 3889 6.959639 AGCTGAATCCAAACTTAAACAGAA 57.040 33.333 0.00 0.00 0.00 3.02
3488 3890 6.974965 AGCTGAATCCAAACTTAAACAGAAG 58.025 36.000 0.00 0.00 0.00 2.85
3490 3892 7.449704 AGCTGAATCCAAACTTAAACAGAAGAT 59.550 33.333 0.00 0.00 0.00 2.40
3491 3893 7.540055 GCTGAATCCAAACTTAAACAGAAGATG 59.460 37.037 0.00 0.00 0.00 2.90
3492 3894 8.463930 TGAATCCAAACTTAAACAGAAGATGT 57.536 30.769 0.00 0.00 46.97 3.06
3493 3895 8.352201 TGAATCCAAACTTAAACAGAAGATGTG 58.648 33.333 0.00 0.00 43.00 3.21
3494 3896 6.072112 TCCAAACTTAAACAGAAGATGTGC 57.928 37.500 0.00 0.00 43.00 4.57
3496 3898 5.916883 CCAAACTTAAACAGAAGATGTGCAG 59.083 40.000 0.00 0.00 43.00 4.41
3497 3899 6.460123 CCAAACTTAAACAGAAGATGTGCAGT 60.460 38.462 0.00 0.00 43.00 4.40
3499 3901 7.986085 AACTTAAACAGAAGATGTGCAGTAT 57.014 32.000 0.00 0.00 43.00 2.12
3500 3902 7.369803 ACTTAAACAGAAGATGTGCAGTATG 57.630 36.000 0.00 0.00 43.00 2.39
3514 3916 2.991250 CAGTATGCTAGCCAAACACCT 58.009 47.619 13.29 0.00 0.00 4.00
3515 3917 4.137116 CAGTATGCTAGCCAAACACCTA 57.863 45.455 13.29 0.00 0.00 3.08
3516 3918 4.708177 CAGTATGCTAGCCAAACACCTAT 58.292 43.478 13.29 0.00 0.00 2.57
3517 3919 4.512944 CAGTATGCTAGCCAAACACCTATG 59.487 45.833 13.29 0.00 0.00 2.23
3518 3920 2.418368 TGCTAGCCAAACACCTATGG 57.582 50.000 13.29 0.00 39.80 2.74
3519 3921 1.064758 TGCTAGCCAAACACCTATGGG 60.065 52.381 13.29 0.00 37.19 4.00
3687 4116 0.899717 GGCTTGGCCTCACATGGAAA 60.900 55.000 3.32 0.00 46.69 3.13
4010 4500 6.200665 TGCTTGTGTTGTTATTTTTGCAGATC 59.799 34.615 0.00 0.00 0.00 2.75
4037 4527 6.591935 AGTCTTCTTTCCATGTACAAGTTGA 58.408 36.000 10.54 0.00 0.00 3.18
4038 4528 6.708054 AGTCTTCTTTCCATGTACAAGTTGAG 59.292 38.462 10.54 0.00 0.00 3.02
4039 4529 5.470098 TCTTCTTTCCATGTACAAGTTGAGC 59.530 40.000 10.54 2.24 0.00 4.26
4048 4547 3.320826 TGTACAAGTTGAGCTGTAGCAGA 59.679 43.478 10.54 0.00 45.16 4.26
4126 4625 1.074889 GGTTTAGGGTCTGCCTCCAAA 59.925 52.381 0.00 0.00 34.45 3.28
4158 4665 0.669619 TGCAGCACCATGTTGAGTTG 59.330 50.000 0.00 0.00 29.49 3.16
4215 4722 1.790755 TATCGCCGGGAATCGAAATG 58.209 50.000 2.18 0.00 42.43 2.32
4309 4816 6.711277 TGTTCAGAGTTAATATGGTTCTGCT 58.289 36.000 0.00 0.00 36.19 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 9.276590 CCTGTAATGTGCTAGAAATTGATGATA 57.723 33.333 0.00 0.00 0.00 2.15
17 18 7.255381 GCCTGTAATGTGCTAGAAATTGATGAT 60.255 37.037 0.00 0.00 0.00 2.45
18 19 6.038603 GCCTGTAATGTGCTAGAAATTGATGA 59.961 38.462 0.00 0.00 0.00 2.92
19 20 6.039047 AGCCTGTAATGTGCTAGAAATTGATG 59.961 38.462 0.00 0.00 32.56 3.07
20 21 6.125029 AGCCTGTAATGTGCTAGAAATTGAT 58.875 36.000 0.00 0.00 32.56 2.57
21 22 5.500234 AGCCTGTAATGTGCTAGAAATTGA 58.500 37.500 0.00 0.00 32.56 2.57
22 23 5.355071 TGAGCCTGTAATGTGCTAGAAATTG 59.645 40.000 0.00 0.00 34.99 2.32
23 24 5.500234 TGAGCCTGTAATGTGCTAGAAATT 58.500 37.500 0.00 0.00 34.99 1.82
24 25 5.102953 TGAGCCTGTAATGTGCTAGAAAT 57.897 39.130 0.00 0.00 34.99 2.17
25 26 4.551702 TGAGCCTGTAATGTGCTAGAAA 57.448 40.909 0.00 0.00 34.99 2.52
26 27 4.551702 TTGAGCCTGTAATGTGCTAGAA 57.448 40.909 0.00 0.00 34.99 2.10
27 28 4.551702 TTTGAGCCTGTAATGTGCTAGA 57.448 40.909 0.00 0.00 34.99 2.43
28 29 5.355071 TGAATTTGAGCCTGTAATGTGCTAG 59.645 40.000 0.00 0.00 34.99 3.42
29 30 5.123820 GTGAATTTGAGCCTGTAATGTGCTA 59.876 40.000 0.00 0.00 34.99 3.49
30 31 4.081406 TGAATTTGAGCCTGTAATGTGCT 58.919 39.130 0.00 0.00 38.24 4.40
31 32 4.082571 AGTGAATTTGAGCCTGTAATGTGC 60.083 41.667 0.00 0.00 0.00 4.57
32 33 5.633830 AGTGAATTTGAGCCTGTAATGTG 57.366 39.130 0.00 0.00 0.00 3.21
33 34 8.486210 TCTATAGTGAATTTGAGCCTGTAATGT 58.514 33.333 0.00 0.00 0.00 2.71
34 35 8.893219 TCTATAGTGAATTTGAGCCTGTAATG 57.107 34.615 0.00 0.00 0.00 1.90
35 36 9.553064 CTTCTATAGTGAATTTGAGCCTGTAAT 57.447 33.333 0.00 0.00 0.00 1.89
36 37 8.540388 ACTTCTATAGTGAATTTGAGCCTGTAA 58.460 33.333 0.00 0.00 35.19 2.41
37 38 8.079211 ACTTCTATAGTGAATTTGAGCCTGTA 57.921 34.615 0.00 0.00 35.19 2.74
38 39 6.951971 ACTTCTATAGTGAATTTGAGCCTGT 58.048 36.000 0.00 0.00 35.19 4.00
39 40 6.481644 GGACTTCTATAGTGAATTTGAGCCTG 59.518 42.308 0.00 0.00 37.17 4.85
40 41 6.156949 TGGACTTCTATAGTGAATTTGAGCCT 59.843 38.462 0.00 0.00 37.17 4.58
41 42 6.349300 TGGACTTCTATAGTGAATTTGAGCC 58.651 40.000 0.00 0.00 37.17 4.70
42 43 7.712639 TCATGGACTTCTATAGTGAATTTGAGC 59.287 37.037 0.00 0.00 37.17 4.26
43 44 9.775854 ATCATGGACTTCTATAGTGAATTTGAG 57.224 33.333 0.00 0.00 37.17 3.02
49 50 9.177608 CCAAAAATCATGGACTTCTATAGTGAA 57.822 33.333 0.00 0.00 40.56 3.18
50 51 8.328758 ACCAAAAATCATGGACTTCTATAGTGA 58.671 33.333 0.00 0.00 40.56 3.41
51 52 8.511604 ACCAAAAATCATGGACTTCTATAGTG 57.488 34.615 0.00 0.00 40.56 2.74
52 53 8.960591 CAACCAAAAATCATGGACTTCTATAGT 58.039 33.333 0.00 0.00 40.56 2.12
53 54 8.960591 ACAACCAAAAATCATGGACTTCTATAG 58.039 33.333 0.00 0.00 40.56 1.31
54 55 8.877864 ACAACCAAAAATCATGGACTTCTATA 57.122 30.769 0.00 0.00 40.56 1.31
55 56 7.781324 ACAACCAAAAATCATGGACTTCTAT 57.219 32.000 0.00 0.00 40.56 1.98
56 57 8.877864 ATACAACCAAAAATCATGGACTTCTA 57.122 30.769 0.00 0.00 40.56 2.10
57 58 7.671398 AGATACAACCAAAAATCATGGACTTCT 59.329 33.333 0.00 0.00 40.56 2.85
58 59 7.830739 AGATACAACCAAAAATCATGGACTTC 58.169 34.615 0.00 0.00 40.56 3.01
59 60 7.451255 TGAGATACAACCAAAAATCATGGACTT 59.549 33.333 0.00 0.00 40.56 3.01
60 61 6.947733 TGAGATACAACCAAAAATCATGGACT 59.052 34.615 0.00 0.00 40.56 3.85
61 62 7.029563 GTGAGATACAACCAAAAATCATGGAC 58.970 38.462 0.00 0.00 40.56 4.02
62 63 6.718912 TGTGAGATACAACCAAAAATCATGGA 59.281 34.615 0.00 0.00 36.86 3.41
63 64 6.923012 TGTGAGATACAACCAAAAATCATGG 58.077 36.000 0.00 0.00 37.95 3.66
69 70 9.522804 GTGTTTTATGTGAGATACAACCAAAAA 57.477 29.630 0.00 0.00 43.77 1.94
70 71 8.687242 TGTGTTTTATGTGAGATACAACCAAAA 58.313 29.630 0.00 0.00 43.77 2.44
71 72 8.226819 TGTGTTTTATGTGAGATACAACCAAA 57.773 30.769 0.00 0.00 43.77 3.28
72 73 7.809546 TGTGTTTTATGTGAGATACAACCAA 57.190 32.000 0.00 0.00 43.77 3.67
73 74 7.994425 ATGTGTTTTATGTGAGATACAACCA 57.006 32.000 0.00 0.00 43.77 3.67
74 75 9.341899 GAAATGTGTTTTATGTGAGATACAACC 57.658 33.333 0.00 0.00 43.77 3.77
75 76 9.891828 TGAAATGTGTTTTATGTGAGATACAAC 57.108 29.630 0.00 0.00 43.77 3.32
111 112 9.778741 GAGGGATGTATAGTTCATTTATGTCAA 57.221 33.333 0.00 0.00 0.00 3.18
112 113 9.159254 AGAGGGATGTATAGTTCATTTATGTCA 57.841 33.333 0.00 0.00 0.00 3.58
113 114 9.429359 CAGAGGGATGTATAGTTCATTTATGTC 57.571 37.037 0.00 0.00 0.00 3.06
114 115 8.938883 ACAGAGGGATGTATAGTTCATTTATGT 58.061 33.333 0.00 0.00 0.00 2.29
120 121 9.775539 ACATATACAGAGGGATGTATAGTTCAT 57.224 33.333 11.10 0.00 46.46 2.57
121 122 9.025041 CACATATACAGAGGGATGTATAGTTCA 57.975 37.037 11.10 0.00 46.46 3.18
122 123 9.026121 ACACATATACAGAGGGATGTATAGTTC 57.974 37.037 11.10 0.00 46.46 3.01
123 124 8.958060 ACACATATACAGAGGGATGTATAGTT 57.042 34.615 11.10 0.62 46.46 2.24
180 181 9.943163 GTCCTAAATTTTGCAAAATAAAAAGCA 57.057 25.926 31.87 14.13 37.62 3.91
184 185 9.838339 TGGAGTCCTAAATTTTGCAAAATAAAA 57.162 25.926 31.87 20.46 37.62 1.52
190 191 8.413229 GCTATATGGAGTCCTAAATTTTGCAAA 58.587 33.333 8.05 8.05 0.00 3.68
191 192 7.014230 GGCTATATGGAGTCCTAAATTTTGCAA 59.986 37.037 11.33 0.00 0.00 4.08
192 193 6.490040 GGCTATATGGAGTCCTAAATTTTGCA 59.510 38.462 11.33 0.00 0.00 4.08
193 194 6.071896 GGGCTATATGGAGTCCTAAATTTTGC 60.072 42.308 11.33 3.90 38.27 3.68
194 195 7.004086 TGGGCTATATGGAGTCCTAAATTTTG 58.996 38.462 11.33 0.00 42.16 2.44
195 196 7.161715 TGGGCTATATGGAGTCCTAAATTTT 57.838 36.000 11.33 0.00 42.16 1.82
196 197 6.240292 CCTGGGCTATATGGAGTCCTAAATTT 60.240 42.308 11.33 0.00 42.16 1.82
197 198 5.251700 CCTGGGCTATATGGAGTCCTAAATT 59.748 44.000 11.33 0.00 42.16 1.82
198 199 4.785376 CCTGGGCTATATGGAGTCCTAAAT 59.215 45.833 11.33 3.87 42.16 1.40
199 200 4.140543 TCCTGGGCTATATGGAGTCCTAAA 60.141 45.833 11.33 0.00 42.16 1.85
200 201 3.404769 TCCTGGGCTATATGGAGTCCTAA 59.595 47.826 11.33 0.00 42.16 2.69
201 202 3.001086 TCCTGGGCTATATGGAGTCCTA 58.999 50.000 11.33 0.73 42.16 2.94
202 203 1.795786 TCCTGGGCTATATGGAGTCCT 59.204 52.381 11.33 0.00 42.16 3.85
203 204 2.183679 CTCCTGGGCTATATGGAGTCC 58.816 57.143 0.73 0.73 41.99 3.85
204 205 1.552792 GCTCCTGGGCTATATGGAGTC 59.447 57.143 9.25 0.00 45.64 3.36
205 206 1.132721 TGCTCCTGGGCTATATGGAGT 60.133 52.381 9.25 0.00 45.64 3.85
206 207 1.554160 CTGCTCCTGGGCTATATGGAG 59.446 57.143 0.00 0.00 46.38 3.86
207 208 1.149923 TCTGCTCCTGGGCTATATGGA 59.850 52.381 8.32 0.00 0.00 3.41
208 209 1.649321 TCTGCTCCTGGGCTATATGG 58.351 55.000 8.32 0.00 0.00 2.74
209 210 3.777106 TTTCTGCTCCTGGGCTATATG 57.223 47.619 8.32 0.00 0.00 1.78
210 211 4.600983 AGATTTTCTGCTCCTGGGCTATAT 59.399 41.667 8.32 0.00 0.00 0.86
211 212 3.976654 AGATTTTCTGCTCCTGGGCTATA 59.023 43.478 8.32 0.00 0.00 1.31
212 213 2.782341 AGATTTTCTGCTCCTGGGCTAT 59.218 45.455 8.32 0.00 0.00 2.97
213 214 2.200081 AGATTTTCTGCTCCTGGGCTA 58.800 47.619 8.32 0.00 0.00 3.93
214 215 0.998145 AGATTTTCTGCTCCTGGGCT 59.002 50.000 8.32 0.00 0.00 5.19
215 216 1.747924 GAAGATTTTCTGCTCCTGGGC 59.252 52.381 0.00 0.00 0.00 5.36
216 217 2.751806 GTGAAGATTTTCTGCTCCTGGG 59.248 50.000 0.00 0.00 34.31 4.45
217 218 3.683802 AGTGAAGATTTTCTGCTCCTGG 58.316 45.455 0.00 0.00 34.31 4.45
218 219 3.688673 GGAGTGAAGATTTTCTGCTCCTG 59.311 47.826 21.59 0.00 44.02 3.86
219 220 3.308046 GGGAGTGAAGATTTTCTGCTCCT 60.308 47.826 24.74 6.38 45.18 3.69
220 221 3.013219 GGGAGTGAAGATTTTCTGCTCC 58.987 50.000 21.14 21.14 45.15 4.70
221 222 3.938334 GAGGGAGTGAAGATTTTCTGCTC 59.062 47.826 10.48 10.48 36.37 4.26
222 223 3.308046 GGAGGGAGTGAAGATTTTCTGCT 60.308 47.826 0.00 0.00 34.31 4.24
223 224 3.013219 GGAGGGAGTGAAGATTTTCTGC 58.987 50.000 0.00 0.00 34.31 4.26
224 225 4.019860 TGAGGAGGGAGTGAAGATTTTCTG 60.020 45.833 0.00 0.00 34.31 3.02
225 226 4.171234 TGAGGAGGGAGTGAAGATTTTCT 58.829 43.478 0.00 0.00 34.31 2.52
226 227 4.559862 TGAGGAGGGAGTGAAGATTTTC 57.440 45.455 0.00 0.00 0.00 2.29
227 228 5.324832 TTTGAGGAGGGAGTGAAGATTTT 57.675 39.130 0.00 0.00 0.00 1.82
228 229 5.222213 ACATTTGAGGAGGGAGTGAAGATTT 60.222 40.000 0.00 0.00 0.00 2.17
229 230 4.290722 ACATTTGAGGAGGGAGTGAAGATT 59.709 41.667 0.00 0.00 0.00 2.40
230 231 3.848975 ACATTTGAGGAGGGAGTGAAGAT 59.151 43.478 0.00 0.00 0.00 2.40
231 232 3.251484 ACATTTGAGGAGGGAGTGAAGA 58.749 45.455 0.00 0.00 0.00 2.87
232 233 3.710209 ACATTTGAGGAGGGAGTGAAG 57.290 47.619 0.00 0.00 0.00 3.02
233 234 4.168101 ACTACATTTGAGGAGGGAGTGAA 58.832 43.478 0.00 0.00 0.00 3.18
234 235 3.791320 ACTACATTTGAGGAGGGAGTGA 58.209 45.455 0.00 0.00 0.00 3.41
235 236 4.442192 GCTACTACATTTGAGGAGGGAGTG 60.442 50.000 0.00 0.00 0.00 3.51
236 237 3.707102 GCTACTACATTTGAGGAGGGAGT 59.293 47.826 0.00 0.00 0.00 3.85
237 238 3.964031 AGCTACTACATTTGAGGAGGGAG 59.036 47.826 0.00 0.00 0.00 4.30
238 239 3.706594 CAGCTACTACATTTGAGGAGGGA 59.293 47.826 0.00 0.00 0.00 4.20
239 240 3.452627 ACAGCTACTACATTTGAGGAGGG 59.547 47.826 0.00 0.00 0.00 4.30
240 241 4.160439 TGACAGCTACTACATTTGAGGAGG 59.840 45.833 0.00 0.00 0.00 4.30
241 242 5.330455 TGACAGCTACTACATTTGAGGAG 57.670 43.478 0.00 0.00 0.00 3.69
242 243 5.738619 TTGACAGCTACTACATTTGAGGA 57.261 39.130 0.00 0.00 0.00 3.71
243 244 6.992063 ATTTGACAGCTACTACATTTGAGG 57.008 37.500 0.00 0.00 0.00 3.86
244 245 8.506437 TGAAATTTGACAGCTACTACATTTGAG 58.494 33.333 0.00 0.00 0.00 3.02
245 246 8.389779 TGAAATTTGACAGCTACTACATTTGA 57.610 30.769 0.00 0.00 0.00 2.69
246 247 9.462174 TTTGAAATTTGACAGCTACTACATTTG 57.538 29.630 0.00 0.00 0.00 2.32
248 249 9.683069 CTTTTGAAATTTGACAGCTACTACATT 57.317 29.630 0.00 0.00 0.00 2.71
249 250 9.066892 TCTTTTGAAATTTGACAGCTACTACAT 57.933 29.630 0.00 0.00 0.00 2.29
250 251 8.445275 TCTTTTGAAATTTGACAGCTACTACA 57.555 30.769 0.00 0.00 0.00 2.74
251 252 9.548208 GATCTTTTGAAATTTGACAGCTACTAC 57.452 33.333 0.00 0.00 0.00 2.73
252 253 9.507329 AGATCTTTTGAAATTTGACAGCTACTA 57.493 29.630 0.00 0.00 0.00 1.82
253 254 8.401490 AGATCTTTTGAAATTTGACAGCTACT 57.599 30.769 0.00 0.00 0.00 2.57
254 255 8.292448 TGAGATCTTTTGAAATTTGACAGCTAC 58.708 33.333 0.00 0.00 0.00 3.58
255 256 8.292448 GTGAGATCTTTTGAAATTTGACAGCTA 58.708 33.333 0.00 0.00 0.00 3.32
256 257 7.014038 AGTGAGATCTTTTGAAATTTGACAGCT 59.986 33.333 0.00 0.00 0.00 4.24
257 258 7.144000 AGTGAGATCTTTTGAAATTTGACAGC 58.856 34.615 0.00 0.00 0.00 4.40
258 259 9.525409 AAAGTGAGATCTTTTGAAATTTGACAG 57.475 29.630 0.00 0.00 34.50 3.51
259 260 9.874205 AAAAGTGAGATCTTTTGAAATTTGACA 57.126 25.926 0.00 0.00 43.24 3.58
263 264 9.481340 GCCTAAAAGTGAGATCTTTTGAAATTT 57.519 29.630 12.64 0.00 44.15 1.82
264 265 8.090831 GGCCTAAAAGTGAGATCTTTTGAAATT 58.909 33.333 12.64 0.00 44.15 1.82
265 266 7.233348 TGGCCTAAAAGTGAGATCTTTTGAAAT 59.767 33.333 3.32 0.00 44.15 2.17
266 267 6.549364 TGGCCTAAAAGTGAGATCTTTTGAAA 59.451 34.615 3.32 0.00 44.15 2.69
267 268 6.016276 GTGGCCTAAAAGTGAGATCTTTTGAA 60.016 38.462 3.32 0.00 44.15 2.69
268 269 5.473504 GTGGCCTAAAAGTGAGATCTTTTGA 59.526 40.000 3.32 0.00 44.15 2.69
269 270 5.335976 GGTGGCCTAAAAGTGAGATCTTTTG 60.336 44.000 3.32 5.20 44.15 2.44
270 271 4.767409 GGTGGCCTAAAAGTGAGATCTTTT 59.233 41.667 3.32 8.94 45.59 2.27
271 272 4.043435 AGGTGGCCTAAAAGTGAGATCTTT 59.957 41.667 3.32 0.00 39.00 2.52
272 273 3.589288 AGGTGGCCTAAAAGTGAGATCTT 59.411 43.478 3.32 0.00 28.47 2.40
273 274 3.185455 AGGTGGCCTAAAAGTGAGATCT 58.815 45.455 3.32 0.00 28.47 2.75
274 275 3.636153 AGGTGGCCTAAAAGTGAGATC 57.364 47.619 3.32 0.00 28.47 2.75
275 276 4.141390 CCATAGGTGGCCTAAAAGTGAGAT 60.141 45.833 3.32 0.00 39.77 2.75
276 277 3.199946 CCATAGGTGGCCTAAAAGTGAGA 59.800 47.826 3.32 0.00 39.77 3.27
277 278 3.545703 CCATAGGTGGCCTAAAAGTGAG 58.454 50.000 3.32 0.00 39.77 3.51
278 279 3.644966 CCATAGGTGGCCTAAAAGTGA 57.355 47.619 3.32 0.00 39.77 3.41
290 291 7.660030 ATAAAATTCCTCCAAACCATAGGTG 57.340 36.000 0.00 0.00 35.34 4.00
291 292 8.004801 CCTATAAAATTCCTCCAAACCATAGGT 58.995 37.037 0.00 0.00 37.65 3.08
292 293 8.224720 TCCTATAAAATTCCTCCAAACCATAGG 58.775 37.037 0.00 0.00 34.93 2.57
293 294 9.813826 ATCCTATAAAATTCCTCCAAACCATAG 57.186 33.333 0.00 0.00 0.00 2.23
295 296 9.506042 AAATCCTATAAAATTCCTCCAAACCAT 57.494 29.630 0.00 0.00 0.00 3.55
296 297 8.909423 AAATCCTATAAAATTCCTCCAAACCA 57.091 30.769 0.00 0.00 0.00 3.67
297 298 9.817809 GAAAATCCTATAAAATTCCTCCAAACC 57.182 33.333 0.00 0.00 0.00 3.27
298 299 9.516314 CGAAAATCCTATAAAATTCCTCCAAAC 57.484 33.333 0.00 0.00 0.00 2.93
299 300 9.250246 ACGAAAATCCTATAAAATTCCTCCAAA 57.750 29.630 0.00 0.00 0.00 3.28
300 301 8.817092 ACGAAAATCCTATAAAATTCCTCCAA 57.183 30.769 0.00 0.00 0.00 3.53
344 345 9.720769 CCAAATCTAAAGGTTGAAAGTCTACTA 57.279 33.333 0.00 0.00 0.00 1.82
345 346 7.665974 CCCAAATCTAAAGGTTGAAAGTCTACT 59.334 37.037 0.00 0.00 0.00 2.57
346 347 7.664318 TCCCAAATCTAAAGGTTGAAAGTCTAC 59.336 37.037 0.00 0.00 0.00 2.59
347 348 7.664318 GTCCCAAATCTAAAGGTTGAAAGTCTA 59.336 37.037 0.00 0.00 0.00 2.59
348 349 6.490381 GTCCCAAATCTAAAGGTTGAAAGTCT 59.510 38.462 0.00 0.00 0.00 3.24
349 350 6.264518 TGTCCCAAATCTAAAGGTTGAAAGTC 59.735 38.462 0.00 0.00 0.00 3.01
350 351 6.133356 TGTCCCAAATCTAAAGGTTGAAAGT 58.867 36.000 0.00 0.00 0.00 2.66
351 352 6.648879 TGTCCCAAATCTAAAGGTTGAAAG 57.351 37.500 0.00 0.00 0.00 2.62
352 353 6.381420 TGTTGTCCCAAATCTAAAGGTTGAAA 59.619 34.615 0.00 0.00 0.00 2.69
353 354 5.894393 TGTTGTCCCAAATCTAAAGGTTGAA 59.106 36.000 0.00 0.00 0.00 2.69
354 355 5.450453 TGTTGTCCCAAATCTAAAGGTTGA 58.550 37.500 0.00 0.00 0.00 3.18
355 356 5.782893 TGTTGTCCCAAATCTAAAGGTTG 57.217 39.130 0.00 0.00 0.00 3.77
356 357 5.245977 CCATGTTGTCCCAAATCTAAAGGTT 59.754 40.000 0.00 0.00 0.00 3.50
357 358 4.772100 CCATGTTGTCCCAAATCTAAAGGT 59.228 41.667 0.00 0.00 0.00 3.50
358 359 4.160252 CCCATGTTGTCCCAAATCTAAAGG 59.840 45.833 0.00 0.00 0.00 3.11
359 360 5.016173 TCCCATGTTGTCCCAAATCTAAAG 58.984 41.667 0.00 0.00 0.00 1.85
360 361 5.004361 TCCCATGTTGTCCCAAATCTAAA 57.996 39.130 0.00 0.00 0.00 1.85
361 362 4.666412 TCCCATGTTGTCCCAAATCTAA 57.334 40.909 0.00 0.00 0.00 2.10
362 363 4.569653 CCTTCCCATGTTGTCCCAAATCTA 60.570 45.833 0.00 0.00 0.00 1.98
363 364 3.434309 CTTCCCATGTTGTCCCAAATCT 58.566 45.455 0.00 0.00 0.00 2.40
364 365 2.497273 CCTTCCCATGTTGTCCCAAATC 59.503 50.000 0.00 0.00 0.00 2.17
365 366 2.539302 CCTTCCCATGTTGTCCCAAAT 58.461 47.619 0.00 0.00 0.00 2.32
366 367 1.482177 CCCTTCCCATGTTGTCCCAAA 60.482 52.381 0.00 0.00 0.00 3.28
367 368 0.114168 CCCTTCCCATGTTGTCCCAA 59.886 55.000 0.00 0.00 0.00 4.12
368 369 1.071314 ACCCTTCCCATGTTGTCCCA 61.071 55.000 0.00 0.00 0.00 4.37
369 370 0.114364 AACCCTTCCCATGTTGTCCC 59.886 55.000 0.00 0.00 0.00 4.46
370 371 1.893137 GAAACCCTTCCCATGTTGTCC 59.107 52.381 0.00 0.00 0.00 4.02
371 372 2.296190 GTGAAACCCTTCCCATGTTGTC 59.704 50.000 0.00 0.00 0.00 3.18
372 373 2.316108 GTGAAACCCTTCCCATGTTGT 58.684 47.619 0.00 0.00 0.00 3.32
373 374 1.269448 CGTGAAACCCTTCCCATGTTG 59.731 52.381 0.00 0.00 0.00 3.33
374 375 1.616159 CGTGAAACCCTTCCCATGTT 58.384 50.000 0.00 0.00 0.00 2.71
375 376 0.251165 CCGTGAAACCCTTCCCATGT 60.251 55.000 0.00 0.00 0.00 3.21
376 377 1.595093 GCCGTGAAACCCTTCCCATG 61.595 60.000 0.00 0.00 0.00 3.66
377 378 1.304134 GCCGTGAAACCCTTCCCAT 60.304 57.895 0.00 0.00 0.00 4.00
378 379 2.114411 GCCGTGAAACCCTTCCCA 59.886 61.111 0.00 0.00 0.00 4.37
379 380 3.053896 CGCCGTGAAACCCTTCCC 61.054 66.667 0.00 0.00 0.00 3.97
380 381 3.733960 GCGCCGTGAAACCCTTCC 61.734 66.667 0.00 0.00 0.00 3.46
381 382 2.065906 TTTGCGCCGTGAAACCCTTC 62.066 55.000 4.18 0.00 0.00 3.46
382 383 1.668101 TTTTGCGCCGTGAAACCCTT 61.668 50.000 4.18 0.00 0.00 3.95
383 384 1.460273 ATTTTGCGCCGTGAAACCCT 61.460 50.000 4.18 0.00 0.00 4.34
384 385 0.598942 AATTTTGCGCCGTGAAACCC 60.599 50.000 4.18 0.00 0.00 4.11
385 386 0.781787 GAATTTTGCGCCGTGAAACC 59.218 50.000 4.18 0.00 0.00 3.27
386 387 1.189227 GTGAATTTTGCGCCGTGAAAC 59.811 47.619 4.18 0.00 0.00 2.78
387 388 1.066303 AGTGAATTTTGCGCCGTGAAA 59.934 42.857 4.18 1.04 0.00 2.69
388 389 0.665835 AGTGAATTTTGCGCCGTGAA 59.334 45.000 4.18 0.00 0.00 3.18
389 390 1.195900 GTAGTGAATTTTGCGCCGTGA 59.804 47.619 4.18 0.00 0.00 4.35
390 391 1.602191 GTAGTGAATTTTGCGCCGTG 58.398 50.000 4.18 0.00 0.00 4.94
391 392 0.519961 GGTAGTGAATTTTGCGCCGT 59.480 50.000 4.18 0.00 0.00 5.68
392 393 0.802494 AGGTAGTGAATTTTGCGCCG 59.198 50.000 4.18 0.00 0.00 6.46
393 394 3.267483 TCTAGGTAGTGAATTTTGCGCC 58.733 45.455 4.18 0.00 0.00 6.53
394 395 4.786609 GCATCTAGGTAGTGAATTTTGCGC 60.787 45.833 0.00 0.00 0.00 6.09
395 396 4.572389 AGCATCTAGGTAGTGAATTTTGCG 59.428 41.667 0.00 0.00 0.00 4.85
396 397 5.586243 TGAGCATCTAGGTAGTGAATTTTGC 59.414 40.000 0.00 0.00 34.92 3.68
397 398 7.615582 TTGAGCATCTAGGTAGTGAATTTTG 57.384 36.000 0.00 0.00 34.92 2.44
398 399 8.103305 TCTTTGAGCATCTAGGTAGTGAATTTT 58.897 33.333 0.00 0.00 34.92 1.82
399 400 7.624549 TCTTTGAGCATCTAGGTAGTGAATTT 58.375 34.615 0.00 0.00 34.92 1.82
400 401 7.187824 TCTTTGAGCATCTAGGTAGTGAATT 57.812 36.000 0.00 0.00 34.92 2.17
401 402 6.798427 TCTTTGAGCATCTAGGTAGTGAAT 57.202 37.500 0.00 0.00 34.92 2.57
402 403 6.211584 AGTTCTTTGAGCATCTAGGTAGTGAA 59.788 38.462 0.00 0.00 34.92 3.18
403 404 5.717178 AGTTCTTTGAGCATCTAGGTAGTGA 59.283 40.000 0.00 0.00 34.92 3.41
404 405 5.971763 AGTTCTTTGAGCATCTAGGTAGTG 58.028 41.667 0.00 0.00 34.92 2.74
405 406 7.719871 TTAGTTCTTTGAGCATCTAGGTAGT 57.280 36.000 0.00 0.00 34.92 2.73
406 407 9.255304 GATTTAGTTCTTTGAGCATCTAGGTAG 57.745 37.037 0.00 0.00 34.92 3.18
407 408 8.982723 AGATTTAGTTCTTTGAGCATCTAGGTA 58.017 33.333 0.00 0.00 34.92 3.08
408 409 7.856415 AGATTTAGTTCTTTGAGCATCTAGGT 58.144 34.615 0.00 0.00 34.92 3.08
409 410 8.729805 AAGATTTAGTTCTTTGAGCATCTAGG 57.270 34.615 0.00 0.00 31.94 3.02
469 470 9.889128 AAATGTACTGCAAAGCCATAAAAATAT 57.111 25.926 0.00 0.00 0.00 1.28
470 471 9.364989 GAAATGTACTGCAAAGCCATAAAAATA 57.635 29.630 0.00 0.00 0.00 1.40
471 472 8.096414 AGAAATGTACTGCAAAGCCATAAAAAT 58.904 29.630 0.00 0.00 0.00 1.82
484 485 3.000041 CAAGCCGTAGAAATGTACTGCA 59.000 45.455 6.84 0.00 36.04 4.41
485 486 2.223044 GCAAGCCGTAGAAATGTACTGC 60.223 50.000 0.00 0.00 34.36 4.40
486 487 3.000041 TGCAAGCCGTAGAAATGTACTG 59.000 45.455 0.00 0.00 0.00 2.74
496 497 3.559238 AAATTCAGTTGCAAGCCGTAG 57.441 42.857 0.00 0.00 0.00 3.51
499 500 7.524294 AAAATATAAATTCAGTTGCAAGCCG 57.476 32.000 0.00 0.00 0.00 5.52
617 618 3.008049 CCCCTTATATTGAGGAACGGAGG 59.992 52.174 6.44 0.00 36.33 4.30
619 620 3.660959 ACCCCTTATATTGAGGAACGGA 58.339 45.455 6.44 0.00 36.33 4.69
620 621 5.757099 ATACCCCTTATATTGAGGAACGG 57.243 43.478 6.44 2.97 36.33 4.44
621 622 9.734984 AAATAATACCCCTTATATTGAGGAACG 57.265 33.333 6.44 0.00 36.33 3.95
786 787 9.881529 GTTTAACCAACTTCACAACGAAATATA 57.118 29.630 0.00 0.00 31.71 0.86
787 788 8.407064 TGTTTAACCAACTTCACAACGAAATAT 58.593 29.630 0.00 0.00 36.21 1.28
788 789 7.759465 TGTTTAACCAACTTCACAACGAAATA 58.241 30.769 0.00 0.00 36.21 1.40
789 790 6.622549 TGTTTAACCAACTTCACAACGAAAT 58.377 32.000 0.00 0.00 36.21 2.17
790 791 6.010294 TGTTTAACCAACTTCACAACGAAA 57.990 33.333 0.00 0.00 36.21 3.46
791 792 5.624344 TGTTTAACCAACTTCACAACGAA 57.376 34.783 0.00 0.00 36.21 3.85
792 793 5.821516 ATGTTTAACCAACTTCACAACGA 57.178 34.783 0.00 0.00 36.21 3.85
793 794 6.849305 GTCTATGTTTAACCAACTTCACAACG 59.151 38.462 0.00 0.00 36.21 4.10
794 795 7.699566 TGTCTATGTTTAACCAACTTCACAAC 58.300 34.615 0.00 0.00 36.21 3.32
795 796 7.867305 TGTCTATGTTTAACCAACTTCACAA 57.133 32.000 0.00 0.00 36.21 3.33
796 797 7.337184 TGTTGTCTATGTTTAACCAACTTCACA 59.663 33.333 12.65 0.00 36.21 3.58
797 798 7.699566 TGTTGTCTATGTTTAACCAACTTCAC 58.300 34.615 12.65 0.00 36.21 3.18
798 799 7.554835 ACTGTTGTCTATGTTTAACCAACTTCA 59.445 33.333 12.65 0.00 36.21 3.02
799 800 7.927048 ACTGTTGTCTATGTTTAACCAACTTC 58.073 34.615 12.65 0.00 36.21 3.01
800 801 7.875327 ACTGTTGTCTATGTTTAACCAACTT 57.125 32.000 12.65 1.75 36.21 2.66
801 802 7.554835 TCAACTGTTGTCTATGTTTAACCAACT 59.445 33.333 19.12 0.00 36.21 3.16
802 803 7.642586 GTCAACTGTTGTCTATGTTTAACCAAC 59.357 37.037 19.12 7.05 35.71 3.77
803 804 7.201750 GGTCAACTGTTGTCTATGTTTAACCAA 60.202 37.037 19.12 0.00 31.40 3.67
804 805 6.261381 GGTCAACTGTTGTCTATGTTTAACCA 59.739 38.462 19.12 0.00 31.40 3.67
805 806 6.485648 AGGTCAACTGTTGTCTATGTTTAACC 59.514 38.462 19.12 14.45 0.00 2.85
806 807 7.492352 AGGTCAACTGTTGTCTATGTTTAAC 57.508 36.000 19.12 6.75 0.00 2.01
807 808 8.514330 AAAGGTCAACTGTTGTCTATGTTTAA 57.486 30.769 19.12 0.00 0.00 1.52
808 809 8.402472 CAAAAGGTCAACTGTTGTCTATGTTTA 58.598 33.333 19.12 0.00 39.21 2.01
809 810 7.122055 TCAAAAGGTCAACTGTTGTCTATGTTT 59.878 33.333 19.12 12.18 43.62 2.83
810 811 6.601613 TCAAAAGGTCAACTGTTGTCTATGTT 59.398 34.615 19.12 6.74 43.62 2.71
811 812 6.119536 TCAAAAGGTCAACTGTTGTCTATGT 58.880 36.000 19.12 1.37 43.62 2.29
812 813 6.618287 TCAAAAGGTCAACTGTTGTCTATG 57.382 37.500 19.12 17.27 43.62 2.23
813 814 7.639113 TTTCAAAAGGTCAACTGTTGTCTAT 57.361 32.000 19.12 5.54 43.62 1.98
814 815 7.455641 TTTTCAAAAGGTCAACTGTTGTCTA 57.544 32.000 19.12 0.00 43.62 2.59
815 816 5.975693 TTTCAAAAGGTCAACTGTTGTCT 57.024 34.783 19.12 14.67 43.62 3.41
816 817 6.645003 AGTTTTTCAAAAGGTCAACTGTTGTC 59.355 34.615 19.12 13.93 43.62 3.18
817 818 6.521162 AGTTTTTCAAAAGGTCAACTGTTGT 58.479 32.000 19.12 0.00 43.62 3.32
818 819 8.527567 TTAGTTTTTCAAAAGGTCAACTGTTG 57.472 30.769 14.24 14.24 44.39 3.33
820 821 9.797556 GTATTAGTTTTTCAAAAGGTCAACTGT 57.202 29.630 0.00 0.00 0.00 3.55
821 822 9.796120 TGTATTAGTTTTTCAAAAGGTCAACTG 57.204 29.630 0.00 0.00 0.00 3.16
822 823 9.797556 GTGTATTAGTTTTTCAAAAGGTCAACT 57.202 29.630 0.00 0.00 0.00 3.16
823 824 9.027129 GGTGTATTAGTTTTTCAAAAGGTCAAC 57.973 33.333 0.00 0.00 0.00 3.18
824 825 8.973182 AGGTGTATTAGTTTTTCAAAAGGTCAA 58.027 29.630 0.00 0.00 0.00 3.18
825 826 8.528044 AGGTGTATTAGTTTTTCAAAAGGTCA 57.472 30.769 0.00 0.00 0.00 4.02
842 843 8.373220 CCTCCGTTCCTAAATATAAGGTGTATT 58.627 37.037 4.41 0.00 35.48 1.89
843 844 7.038516 CCCTCCGTTCCTAAATATAAGGTGTAT 60.039 40.741 4.41 0.00 35.48 2.29
844 845 6.268387 CCCTCCGTTCCTAAATATAAGGTGTA 59.732 42.308 4.41 0.00 35.48 2.90
845 846 5.071384 CCCTCCGTTCCTAAATATAAGGTGT 59.929 44.000 4.41 0.00 35.48 4.16
846 847 5.071384 ACCCTCCGTTCCTAAATATAAGGTG 59.929 44.000 4.41 0.00 35.48 4.00
847 848 5.222086 ACCCTCCGTTCCTAAATATAAGGT 58.778 41.667 4.41 0.00 35.48 3.50
848 849 5.820404 ACCCTCCGTTCCTAAATATAAGG 57.180 43.478 0.00 0.00 35.26 2.69
849 850 6.207417 TCGTACCCTCCGTTCCTAAATATAAG 59.793 42.308 0.00 0.00 0.00 1.73
850 851 6.068010 TCGTACCCTCCGTTCCTAAATATAA 58.932 40.000 0.00 0.00 0.00 0.98
851 852 5.630121 TCGTACCCTCCGTTCCTAAATATA 58.370 41.667 0.00 0.00 0.00 0.86
852 853 4.473444 TCGTACCCTCCGTTCCTAAATAT 58.527 43.478 0.00 0.00 0.00 1.28
853 854 3.897239 TCGTACCCTCCGTTCCTAAATA 58.103 45.455 0.00 0.00 0.00 1.40
854 855 2.738743 TCGTACCCTCCGTTCCTAAAT 58.261 47.619 0.00 0.00 0.00 1.40
855 856 2.214376 TCGTACCCTCCGTTCCTAAA 57.786 50.000 0.00 0.00 0.00 1.85
856 857 2.442236 ATCGTACCCTCCGTTCCTAA 57.558 50.000 0.00 0.00 0.00 2.69
857 858 3.117888 AGTTATCGTACCCTCCGTTCCTA 60.118 47.826 0.00 0.00 0.00 2.94
858 859 2.027385 GTTATCGTACCCTCCGTTCCT 58.973 52.381 0.00 0.00 0.00 3.36
859 860 2.027385 AGTTATCGTACCCTCCGTTCC 58.973 52.381 0.00 0.00 0.00 3.62
860 861 2.684881 TCAGTTATCGTACCCTCCGTTC 59.315 50.000 0.00 0.00 0.00 3.95
861 862 2.726821 TCAGTTATCGTACCCTCCGTT 58.273 47.619 0.00 0.00 0.00 4.44
862 863 2.425143 TCAGTTATCGTACCCTCCGT 57.575 50.000 0.00 0.00 0.00 4.69
863 864 3.067742 ACATTCAGTTATCGTACCCTCCG 59.932 47.826 0.00 0.00 0.00 4.63
864 865 4.667519 ACATTCAGTTATCGTACCCTCC 57.332 45.455 0.00 0.00 0.00 4.30
865 866 4.270325 GCAACATTCAGTTATCGTACCCTC 59.730 45.833 0.00 0.00 38.74 4.30
866 867 4.189231 GCAACATTCAGTTATCGTACCCT 58.811 43.478 0.00 0.00 38.74 4.34
867 868 3.311596 GGCAACATTCAGTTATCGTACCC 59.688 47.826 0.00 0.00 38.74 3.69
868 869 3.936453 TGGCAACATTCAGTTATCGTACC 59.064 43.478 0.00 0.00 46.17 3.34
1034 1107 2.680352 TGGAGGAGGAGTGGCGTC 60.680 66.667 0.00 0.00 0.00 5.19
1035 1108 2.997897 GTGGAGGAGGAGTGGCGT 60.998 66.667 0.00 0.00 0.00 5.68
1114 1193 1.323534 CGTAGTGAGCGTGCCAAATAC 59.676 52.381 0.00 0.00 0.00 1.89
1115 1194 1.635844 CGTAGTGAGCGTGCCAAATA 58.364 50.000 0.00 0.00 0.00 1.40
1118 1197 2.048597 CCGTAGTGAGCGTGCCAA 60.049 61.111 0.00 0.00 0.00 4.52
1195 1274 6.672657 AGGGTAGCTAGAAAGTTATTCAAGGA 59.327 38.462 0.00 0.00 0.00 3.36
1433 1830 1.149148 GAGGGTGCTGAAAACGACTC 58.851 55.000 0.00 0.00 0.00 3.36
1611 2008 1.659622 CCTGCTGCGCCATTTCATGA 61.660 55.000 4.18 0.00 0.00 3.07
1929 2326 3.027419 GCCCTTCATAGCCATGGTC 57.973 57.895 14.67 5.80 32.61 4.02
2154 2551 2.691011 GACTACATCTGGACTCACTCCC 59.309 54.545 0.00 0.00 38.49 4.30
2302 2699 5.278758 CGAAATCCCCATGTGTACAAAAACT 60.279 40.000 0.00 0.00 0.00 2.66
2325 2722 3.369546 ACCAATTCCTTTGCTTTCACG 57.630 42.857 0.00 0.00 33.73 4.35
2388 2785 6.976925 GGTTCTGCATTATTGAATGGAAGAAG 59.023 38.462 0.00 0.00 42.16 2.85
2531 2928 2.651382 TGATGCATCCTCCATCTTGG 57.349 50.000 23.67 0.00 39.76 3.61
2604 3001 8.348285 TGCAATAGCCATTAATAAGAATACCC 57.652 34.615 0.00 0.00 41.13 3.69
3381 3783 7.934665 TTGTTGTACAAGCAGAAGGATACTTTA 59.065 33.333 8.98 0.00 45.36 1.85
3438 3840 8.539770 TTGTTTGTTCTGAGCTTCTTCTATAG 57.460 34.615 0.00 0.00 0.00 1.31
3452 3854 4.935702 TGGATTCAGCTTTGTTTGTTCTG 58.064 39.130 0.00 0.00 0.00 3.02
3453 3855 5.596836 TTGGATTCAGCTTTGTTTGTTCT 57.403 34.783 0.00 0.00 0.00 3.01
3454 3856 5.812127 AGTTTGGATTCAGCTTTGTTTGTTC 59.188 36.000 0.00 0.00 0.00 3.18
3456 3858 5.343307 AGTTTGGATTCAGCTTTGTTTGT 57.657 34.783 0.00 0.00 0.00 2.83
3457 3859 7.769272 TTAAGTTTGGATTCAGCTTTGTTTG 57.231 32.000 0.00 0.00 0.00 2.93
3459 3861 7.327214 TGTTTAAGTTTGGATTCAGCTTTGTT 58.673 30.769 0.00 0.00 0.00 2.83
3460 3862 6.872920 TGTTTAAGTTTGGATTCAGCTTTGT 58.127 32.000 0.00 0.00 0.00 2.83
3461 3863 7.202526 TCTGTTTAAGTTTGGATTCAGCTTTG 58.797 34.615 0.00 0.00 0.00 2.77
3462 3864 7.346751 TCTGTTTAAGTTTGGATTCAGCTTT 57.653 32.000 0.00 0.00 0.00 3.51
3463 3865 6.959639 TCTGTTTAAGTTTGGATTCAGCTT 57.040 33.333 0.00 0.00 0.00 3.74
3464 3866 6.772716 TCTTCTGTTTAAGTTTGGATTCAGCT 59.227 34.615 0.00 0.00 0.00 4.24
3465 3867 6.970484 TCTTCTGTTTAAGTTTGGATTCAGC 58.030 36.000 0.00 0.00 0.00 4.26
3466 3868 8.571336 ACATCTTCTGTTTAAGTTTGGATTCAG 58.429 33.333 0.00 0.00 32.90 3.02
3467 3869 8.352201 CACATCTTCTGTTTAAGTTTGGATTCA 58.648 33.333 0.00 0.00 35.29 2.57
3470 3872 6.265196 TGCACATCTTCTGTTTAAGTTTGGAT 59.735 34.615 0.00 0.00 35.29 3.41
3472 3874 5.830912 TGCACATCTTCTGTTTAAGTTTGG 58.169 37.500 0.00 0.00 35.29 3.28
3477 3879 6.253746 GCATACTGCACATCTTCTGTTTAAG 58.746 40.000 0.00 0.00 44.26 1.85
3478 3880 6.182039 GCATACTGCACATCTTCTGTTTAA 57.818 37.500 0.00 0.00 44.26 1.52
3479 3881 5.801350 GCATACTGCACATCTTCTGTTTA 57.199 39.130 0.00 0.00 44.26 2.01
3493 3895 1.401905 GGTGTTTGGCTAGCATACTGC 59.598 52.381 18.24 8.02 45.46 4.40
3494 3896 2.991250 AGGTGTTTGGCTAGCATACTG 58.009 47.619 18.24 0.00 0.00 2.74
3496 3898 3.815401 CCATAGGTGTTTGGCTAGCATAC 59.185 47.826 18.24 11.24 0.00 2.39
3497 3899 3.181445 CCCATAGGTGTTTGGCTAGCATA 60.181 47.826 18.24 1.35 0.00 3.14
3499 3901 1.064758 CCCATAGGTGTTTGGCTAGCA 60.065 52.381 18.24 0.00 0.00 3.49
3500 3902 1.211949 TCCCATAGGTGTTTGGCTAGC 59.788 52.381 6.04 6.04 0.00 3.42
3501 3903 2.771943 TCTCCCATAGGTGTTTGGCTAG 59.228 50.000 0.00 0.00 0.00 3.42
3502 3904 2.840511 TCTCCCATAGGTGTTTGGCTA 58.159 47.619 0.00 0.00 0.00 3.93
3503 3905 1.668826 TCTCCCATAGGTGTTTGGCT 58.331 50.000 0.00 0.00 0.00 4.75
3504 3906 2.026262 TCTTCTCCCATAGGTGTTTGGC 60.026 50.000 0.00 0.00 0.00 4.52
3505 3907 3.009033 TGTCTTCTCCCATAGGTGTTTGG 59.991 47.826 0.00 0.00 0.00 3.28
3506 3908 4.020218 TCTGTCTTCTCCCATAGGTGTTTG 60.020 45.833 0.00 0.00 0.00 2.93
3507 3909 4.020128 GTCTGTCTTCTCCCATAGGTGTTT 60.020 45.833 0.00 0.00 0.00 2.83
3508 3910 3.515901 GTCTGTCTTCTCCCATAGGTGTT 59.484 47.826 0.00 0.00 0.00 3.32
3509 3911 3.100671 GTCTGTCTTCTCCCATAGGTGT 58.899 50.000 0.00 0.00 0.00 4.16
3510 3912 2.432510 GGTCTGTCTTCTCCCATAGGTG 59.567 54.545 0.00 0.00 0.00 4.00
3511 3913 2.316372 AGGTCTGTCTTCTCCCATAGGT 59.684 50.000 0.00 0.00 0.00 3.08
3512 3914 3.039252 AGGTCTGTCTTCTCCCATAGG 57.961 52.381 0.00 0.00 0.00 2.57
3513 3915 4.148838 CCTAGGTCTGTCTTCTCCCATAG 58.851 52.174 0.00 0.00 0.00 2.23
3514 3916 3.691603 GCCTAGGTCTGTCTTCTCCCATA 60.692 52.174 11.31 0.00 0.00 2.74
3515 3917 2.957312 GCCTAGGTCTGTCTTCTCCCAT 60.957 54.545 11.31 0.00 0.00 4.00
3516 3918 1.619977 GCCTAGGTCTGTCTTCTCCCA 60.620 57.143 11.31 0.00 0.00 4.37
3517 3919 1.116308 GCCTAGGTCTGTCTTCTCCC 58.884 60.000 11.31 0.00 0.00 4.30
3518 3920 1.116308 GGCCTAGGTCTGTCTTCTCC 58.884 60.000 11.31 0.00 0.00 3.71
3519 3921 1.754226 CAGGCCTAGGTCTGTCTTCTC 59.246 57.143 31.65 1.15 42.37 2.87
3687 4116 4.621269 AGGGACTGGTTGACTCGT 57.379 55.556 0.00 0.00 37.18 4.18
4010 4500 6.702329 ACTTGTACATGGAAAGAAGACTAGG 58.298 40.000 12.86 0.00 0.00 3.02
4037 4527 1.535833 ACGTACAGTCTGCTACAGCT 58.464 50.000 0.00 0.00 42.66 4.24
4038 4528 2.349297 AACGTACAGTCTGCTACAGC 57.651 50.000 0.00 0.00 42.50 4.40
4039 4529 3.427243 GCTAACGTACAGTCTGCTACAG 58.573 50.000 0.00 0.00 0.00 2.74
4048 4547 5.544650 ACATACAAAAGGCTAACGTACAGT 58.455 37.500 0.00 0.00 0.00 3.55
4133 4640 1.941975 CAACATGGTGCTGCATCGATA 59.058 47.619 5.27 0.00 0.00 2.92
4158 4665 5.874895 AATTAAGCCAAGTTACGAGGTTC 57.125 39.130 0.00 0.00 0.00 3.62
4241 4748 7.593273 GTGCAACAACACATAGTATGCTTTTTA 59.407 33.333 10.16 0.00 40.40 1.52
4309 4816 4.937620 GCTGACAGTCAATGAGAATTACCA 59.062 41.667 4.41 0.00 0.00 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.