Multiple sequence alignment - TraesCS2B01G126800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G126800 chr2B 100.000 2759 0 0 1 2759 94942036 94939278 0.000000e+00 5096
1 TraesCS2B01G126800 chr2B 96.453 733 20 1 1 733 357176691 357177417 0.000000e+00 1205
2 TraesCS2B01G126800 chr2B 96.491 684 21 3 1 684 470512809 470513489 0.000000e+00 1127
3 TraesCS2B01G126800 chr2D 88.765 1255 90 23 779 2013 60761365 60760142 0.000000e+00 1489
4 TraesCS2B01G126800 chr2D 87.692 325 26 9 2233 2553 60759672 60759358 1.560000e-97 366
5 TraesCS2B01G126800 chr2D 90.625 160 12 3 2012 2169 60760107 60759949 2.780000e-50 209
6 TraesCS2B01G126800 chr2A 88.090 1251 98 24 779 2005 61293241 61292018 0.000000e+00 1437
7 TraesCS2B01G126800 chr2A 95.385 65 3 0 2021 2085 61291961 61291897 1.350000e-18 104
8 TraesCS2B01G126800 chr7B 97.031 741 20 2 1 740 27593354 27594093 0.000000e+00 1245
9 TraesCS2B01G126800 chr4B 97.283 736 17 3 1 735 278425669 278424936 0.000000e+00 1245
10 TraesCS2B01G126800 chr4B 95.765 732 24 6 1 731 609748668 609749393 0.000000e+00 1173
11 TraesCS2B01G126800 chr1B 96.735 735 22 2 1 734 220383699 220382966 0.000000e+00 1223
12 TraesCS2B01G126800 chr5B 96.038 732 27 2 1 732 199499138 199499867 0.000000e+00 1190
13 TraesCS2B01G126800 chr5B 95.251 716 32 2 2 717 673107471 673106758 0.000000e+00 1133
14 TraesCS2B01G126800 chr3B 96.033 731 26 3 1 731 51770130 51770857 0.000000e+00 1186
15 TraesCS2B01G126800 chr5D 94.892 509 24 2 223 731 553478734 553478228 0.000000e+00 795


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G126800 chr2B 94939278 94942036 2758 True 5096.0 5096 100.000000 1 2759 1 chr2B.!!$R1 2758
1 TraesCS2B01G126800 chr2B 357176691 357177417 726 False 1205.0 1205 96.453000 1 733 1 chr2B.!!$F1 732
2 TraesCS2B01G126800 chr2B 470512809 470513489 680 False 1127.0 1127 96.491000 1 684 1 chr2B.!!$F2 683
3 TraesCS2B01G126800 chr2D 60759358 60761365 2007 True 688.0 1489 89.027333 779 2553 3 chr2D.!!$R1 1774
4 TraesCS2B01G126800 chr2A 61291897 61293241 1344 True 770.5 1437 91.737500 779 2085 2 chr2A.!!$R1 1306
5 TraesCS2B01G126800 chr7B 27593354 27594093 739 False 1245.0 1245 97.031000 1 740 1 chr7B.!!$F1 739
6 TraesCS2B01G126800 chr4B 278424936 278425669 733 True 1245.0 1245 97.283000 1 735 1 chr4B.!!$R1 734
7 TraesCS2B01G126800 chr4B 609748668 609749393 725 False 1173.0 1173 95.765000 1 731 1 chr4B.!!$F1 730
8 TraesCS2B01G126800 chr1B 220382966 220383699 733 True 1223.0 1223 96.735000 1 734 1 chr1B.!!$R1 733
9 TraesCS2B01G126800 chr5B 199499138 199499867 729 False 1190.0 1190 96.038000 1 732 1 chr5B.!!$F1 731
10 TraesCS2B01G126800 chr5B 673106758 673107471 713 True 1133.0 1133 95.251000 2 717 1 chr5B.!!$R1 715
11 TraesCS2B01G126800 chr3B 51770130 51770857 727 False 1186.0 1186 96.033000 1 731 1 chr3B.!!$F1 730
12 TraesCS2B01G126800 chr5D 553478228 553478734 506 True 795.0 795 94.892000 223 731 1 chr5D.!!$R1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
929 936 0.179045 GCGACCATCCTGCACCTTAT 60.179 55.0 0.0 0.0 0.0 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1986 2029 0.16747 CAAGGCGCAGATGTGAACTG 59.833 55.0 10.83 0.0 38.27 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
637 643 4.983538 TCGCGAGTCACTGTGTTAAAATAA 59.016 37.500 3.71 0.00 0.00 1.40
736 743 3.376859 CGGCCATGTTTGCTAGTAAATCA 59.623 43.478 9.31 9.49 0.00 2.57
740 747 6.648725 GGCCATGTTTGCTAGTAAATCAAAAA 59.351 34.615 9.31 0.00 32.36 1.94
741 748 7.148590 GGCCATGTTTGCTAGTAAATCAAAAAG 60.149 37.037 9.31 0.00 32.36 2.27
742 749 7.148590 GCCATGTTTGCTAGTAAATCAAAAAGG 60.149 37.037 9.31 10.46 32.36 3.11
743 750 7.148590 CCATGTTTGCTAGTAAATCAAAAAGGC 60.149 37.037 9.31 0.00 32.36 4.35
744 751 6.220201 TGTTTGCTAGTAAATCAAAAAGGCC 58.780 36.000 9.31 0.00 32.36 5.19
745 752 6.041523 TGTTTGCTAGTAAATCAAAAAGGCCT 59.958 34.615 9.31 0.00 32.36 5.19
746 753 6.664428 TTGCTAGTAAATCAAAAAGGCCTT 57.336 33.333 13.78 13.78 0.00 4.35
747 754 7.768807 TTGCTAGTAAATCAAAAAGGCCTTA 57.231 32.000 20.84 2.57 0.00 2.69
748 755 7.954666 TGCTAGTAAATCAAAAAGGCCTTAT 57.045 32.000 20.84 8.31 0.00 1.73
749 756 8.361169 TGCTAGTAAATCAAAAAGGCCTTATT 57.639 30.769 20.84 12.03 0.00 1.40
750 757 8.250332 TGCTAGTAAATCAAAAAGGCCTTATTG 58.750 33.333 20.84 10.01 0.00 1.90
751 758 7.706607 GCTAGTAAATCAAAAAGGCCTTATTGG 59.293 37.037 20.84 12.77 39.35 3.16
752 759 7.553504 AGTAAATCAAAAAGGCCTTATTGGT 57.446 32.000 20.84 0.00 38.35 3.67
753 760 7.973402 AGTAAATCAAAAAGGCCTTATTGGTT 58.027 30.769 20.84 5.91 38.35 3.67
754 761 8.094548 AGTAAATCAAAAAGGCCTTATTGGTTC 58.905 33.333 20.84 5.25 38.35 3.62
755 762 4.882842 TCAAAAAGGCCTTATTGGTTCC 57.117 40.909 20.84 0.00 38.35 3.62
756 763 3.257127 TCAAAAAGGCCTTATTGGTTCCG 59.743 43.478 20.84 4.32 38.35 4.30
757 764 2.891191 AAAGGCCTTATTGGTTCCGA 57.109 45.000 20.84 0.00 38.35 4.55
758 765 2.124277 AAGGCCTTATTGGTTCCGAC 57.876 50.000 18.87 0.00 38.35 4.79
759 766 0.255033 AGGCCTTATTGGTTCCGACC 59.745 55.000 0.00 0.00 46.71 4.79
767 774 4.426112 GGTTCCGACCGACCGACC 62.426 72.222 0.00 0.00 35.91 4.79
768 775 4.426112 GTTCCGACCGACCGACCC 62.426 72.222 0.00 0.00 0.00 4.46
769 776 4.972733 TTCCGACCGACCGACCCA 62.973 66.667 0.00 0.00 0.00 4.51
772 779 3.812019 CGACCGACCGACCCAGAG 61.812 72.222 0.00 0.00 0.00 3.35
773 780 2.675772 GACCGACCGACCCAGAGT 60.676 66.667 0.00 0.00 0.00 3.24
774 781 2.675772 ACCGACCGACCCAGAGTC 60.676 66.667 0.00 0.00 42.54 3.36
784 791 2.125912 CCAGAGTCGCGGTTCCTG 60.126 66.667 6.13 8.88 0.00 3.86
789 796 4.754667 GTCGCGGTTCCTGGGTCC 62.755 72.222 6.13 0.00 0.00 4.46
795 802 2.572284 GTTCCTGGGTCCGTCTCG 59.428 66.667 0.00 0.00 0.00 4.04
828 835 2.854777 GTCTTCCACGTCATTCTCGATG 59.145 50.000 0.00 0.00 37.08 3.84
830 837 0.525455 TCCACGTCATTCTCGATGCG 60.525 55.000 0.00 0.00 39.51 4.73
832 839 1.139734 ACGTCATTCTCGATGCGCT 59.860 52.632 9.73 0.00 38.19 5.92
902 909 2.507324 GGCAACTCTCTCGACGCC 60.507 66.667 0.00 0.00 0.00 5.68
903 910 2.258591 GCAACTCTCTCGACGCCA 59.741 61.111 0.00 0.00 0.00 5.69
908 915 2.033602 TCTCTCGACGCCACCAGA 59.966 61.111 0.00 0.00 0.00 3.86
923 930 3.381983 AGACGCGACCATCCTGCA 61.382 61.111 15.93 0.00 0.00 4.41
924 931 3.188786 GACGCGACCATCCTGCAC 61.189 66.667 15.93 0.00 0.00 4.57
925 932 4.760047 ACGCGACCATCCTGCACC 62.760 66.667 15.93 0.00 0.00 5.01
926 933 4.457496 CGCGACCATCCTGCACCT 62.457 66.667 0.00 0.00 0.00 4.00
927 934 2.045926 GCGACCATCCTGCACCTT 60.046 61.111 0.00 0.00 0.00 3.50
928 935 1.220749 GCGACCATCCTGCACCTTA 59.779 57.895 0.00 0.00 0.00 2.69
929 936 0.179045 GCGACCATCCTGCACCTTAT 60.179 55.000 0.00 0.00 0.00 1.73
930 937 1.070134 GCGACCATCCTGCACCTTATA 59.930 52.381 0.00 0.00 0.00 0.98
954 961 4.710695 CACCGCCGCACGTACAGA 62.711 66.667 0.00 0.00 41.42 3.41
985 998 3.801620 GGAACGGGGAGGACAAGA 58.198 61.111 0.00 0.00 0.00 3.02
988 1001 0.673956 GAACGGGGAGGACAAGAAGC 60.674 60.000 0.00 0.00 0.00 3.86
992 1005 0.329596 GGGGAGGACAAGAAGCACAT 59.670 55.000 0.00 0.00 0.00 3.21
1008 1021 2.124570 ATGAGCACGATGGCCACC 60.125 61.111 8.16 0.00 0.00 4.61
1037 1050 2.100603 CCGTCTCTTCGCCTCGAC 59.899 66.667 0.00 0.00 34.89 4.20
1133 1149 1.826921 GAGATCCCGCCGTCCACTA 60.827 63.158 0.00 0.00 0.00 2.74
1569 1594 4.500116 GAGGACCGGCTCGAGCAC 62.500 72.222 36.27 24.35 44.36 4.40
1761 1786 1.829970 GCCATGGGGAAGCTAAGCC 60.830 63.158 15.13 0.00 35.59 4.35
1769 1794 1.653151 GGAAGCTAAGCCGATTCGTT 58.347 50.000 5.20 0.00 0.00 3.85
1776 1801 2.399611 GCCGATTCGTTTCTGGCG 59.600 61.111 5.20 0.00 35.77 5.69
1856 1893 2.853594 TCGCCACGATCGTGTAAAATAC 59.146 45.455 37.88 20.50 44.02 1.89
1858 1895 3.301579 CGCCACGATCGTGTAAAATACAG 60.302 47.826 37.88 23.80 44.02 2.74
1859 1896 3.861113 GCCACGATCGTGTAAAATACAGA 59.139 43.478 37.88 0.00 44.02 3.41
1860 1897 4.327898 GCCACGATCGTGTAAAATACAGAA 59.672 41.667 37.88 0.00 44.02 3.02
1861 1898 5.500290 GCCACGATCGTGTAAAATACAGAAG 60.500 44.000 37.88 22.57 44.02 2.85
1862 1899 5.005394 CCACGATCGTGTAAAATACAGAAGG 59.995 44.000 37.88 19.43 44.02 3.46
1863 1900 4.565564 ACGATCGTGTAAAATACAGAAGGC 59.434 41.667 22.06 0.00 39.77 4.35
1864 1901 4.804139 CGATCGTGTAAAATACAGAAGGCT 59.196 41.667 7.03 0.00 39.77 4.58
1865 1902 9.493036 CACGATCGTGTAAAATACAGAAGGCTG 62.493 44.444 34.48 7.28 42.96 4.85
1867 1904 5.730550 TCGTGTAAAATACAGAAGGCTGAT 58.269 37.500 0.00 0.00 45.17 2.90
1868 1905 6.869695 TCGTGTAAAATACAGAAGGCTGATA 58.130 36.000 0.00 0.00 45.17 2.15
1869 1906 6.978659 TCGTGTAAAATACAGAAGGCTGATAG 59.021 38.462 0.00 0.00 45.17 2.08
1870 1907 6.978659 CGTGTAAAATACAGAAGGCTGATAGA 59.021 38.462 0.00 0.00 45.17 1.98
1871 1908 7.491372 CGTGTAAAATACAGAAGGCTGATAGAA 59.509 37.037 0.00 0.00 45.17 2.10
1872 1909 8.821894 GTGTAAAATACAGAAGGCTGATAGAAG 58.178 37.037 0.00 0.00 45.17 2.85
1873 1910 6.934048 AAAATACAGAAGGCTGATAGAAGC 57.066 37.500 0.00 0.00 45.17 3.86
1874 1911 2.593346 ACAGAAGGCTGATAGAAGCG 57.407 50.000 0.00 0.00 45.17 4.68
1880 1917 1.144936 GCTGATAGAAGCGGTGCCT 59.855 57.895 0.00 0.00 32.56 4.75
1891 1928 0.378610 GCGGTGCCTCTGAATAAAGC 59.621 55.000 0.00 0.00 0.00 3.51
1924 1962 7.096885 GCGAATGTAAATATGTTGCTTGATGTC 60.097 37.037 0.00 0.00 0.00 3.06
1995 2038 2.093973 GTCCATCTCGACCAGTTCACAT 60.094 50.000 0.00 0.00 0.00 3.21
2006 2049 0.035317 AGTTCACATCTGCGCCTTGA 59.965 50.000 4.18 0.26 0.00 3.02
2008 2051 1.063174 GTTCACATCTGCGCCTTGATC 59.937 52.381 4.18 0.00 0.00 2.92
2065 2149 2.116125 AGGGTGGTTTGCTGCCTC 59.884 61.111 0.00 0.00 0.00 4.70
2066 2150 2.203480 GGGTGGTTTGCTGCCTCA 60.203 61.111 0.00 0.00 0.00 3.86
2102 2187 6.901265 CCAAATTTGGCAAGAAAAAGGTATG 58.099 36.000 23.81 0.00 42.21 2.39
2104 2189 5.823861 ATTTGGCAAGAAAAAGGTATGGT 57.176 34.783 0.00 0.00 0.00 3.55
2106 2191 4.864704 TGGCAAGAAAAAGGTATGGTTC 57.135 40.909 0.00 0.00 0.00 3.62
2108 2193 3.832490 GGCAAGAAAAAGGTATGGTTCCT 59.168 43.478 0.00 0.00 36.81 3.36
2123 2208 4.374399 TGGTTCCTAGAGTTCAAACGTTC 58.626 43.478 0.00 0.00 0.00 3.95
2125 2210 3.293311 TCCTAGAGTTCAAACGTTCGG 57.707 47.619 0.00 0.00 0.00 4.30
2139 2224 1.661112 CGTTCGGCTGGAGAATTCTTC 59.339 52.381 9.87 8.30 0.00 2.87
2173 2385 1.153086 CAGGCATGAGGGCAGGTAC 60.153 63.158 0.00 0.00 46.44 3.34
2183 2395 1.576272 AGGGCAGGTACATACTCCTCT 59.424 52.381 0.00 0.00 30.91 3.69
2184 2396 1.689273 GGGCAGGTACATACTCCTCTG 59.311 57.143 0.00 0.00 30.91 3.35
2185 2397 2.389715 GGCAGGTACATACTCCTCTGT 58.610 52.381 0.00 0.00 30.91 3.41
2186 2398 2.101582 GGCAGGTACATACTCCTCTGTG 59.898 54.545 0.00 0.00 30.91 3.66
2187 2399 2.482142 GCAGGTACATACTCCTCTGTGC 60.482 54.545 0.00 0.00 30.91 4.57
2188 2400 2.760650 CAGGTACATACTCCTCTGTGCA 59.239 50.000 0.00 0.00 30.62 4.57
2189 2401 3.027412 AGGTACATACTCCTCTGTGCAG 58.973 50.000 0.00 0.00 30.62 4.41
2200 2513 1.002033 CTCTGTGCAGTTTCACTTGCC 60.002 52.381 0.00 0.00 37.81 4.52
2201 2514 0.031178 CTGTGCAGTTTCACTTGCCC 59.969 55.000 0.00 0.00 37.81 5.36
2202 2515 0.395586 TGTGCAGTTTCACTTGCCCT 60.396 50.000 0.00 0.00 37.81 5.19
2203 2516 0.746659 GTGCAGTTTCACTTGCCCTT 59.253 50.000 0.00 0.00 34.29 3.95
2204 2517 0.746063 TGCAGTTTCACTTGCCCTTG 59.254 50.000 0.00 0.00 0.00 3.61
2205 2518 0.746659 GCAGTTTCACTTGCCCTTGT 59.253 50.000 0.00 0.00 0.00 3.16
2206 2519 1.136891 GCAGTTTCACTTGCCCTTGTT 59.863 47.619 0.00 0.00 0.00 2.83
2207 2520 2.799562 GCAGTTTCACTTGCCCTTGTTC 60.800 50.000 0.00 0.00 0.00 3.18
2208 2521 2.689983 CAGTTTCACTTGCCCTTGTTCT 59.310 45.455 0.00 0.00 0.00 3.01
2209 2522 3.882888 CAGTTTCACTTGCCCTTGTTCTA 59.117 43.478 0.00 0.00 0.00 2.10
2210 2523 4.338118 CAGTTTCACTTGCCCTTGTTCTAA 59.662 41.667 0.00 0.00 0.00 2.10
2211 2524 4.953579 AGTTTCACTTGCCCTTGTTCTAAA 59.046 37.500 0.00 0.00 0.00 1.85
2212 2525 5.067805 AGTTTCACTTGCCCTTGTTCTAAAG 59.932 40.000 0.00 0.00 0.00 1.85
2214 2527 4.985538 TCACTTGCCCTTGTTCTAAAGAT 58.014 39.130 0.00 0.00 0.00 2.40
2215 2528 4.761739 TCACTTGCCCTTGTTCTAAAGATG 59.238 41.667 0.00 0.00 0.00 2.90
2216 2529 3.507622 ACTTGCCCTTGTTCTAAAGATGC 59.492 43.478 0.00 0.00 0.00 3.91
2217 2530 3.439857 TGCCCTTGTTCTAAAGATGCT 57.560 42.857 0.00 0.00 0.00 3.79
2219 2532 4.151883 TGCCCTTGTTCTAAAGATGCTTT 58.848 39.130 0.00 0.00 0.00 3.51
2221 2534 4.021981 GCCCTTGTTCTAAAGATGCTTTGT 60.022 41.667 2.85 0.00 0.00 2.83
2222 2535 5.509670 GCCCTTGTTCTAAAGATGCTTTGTT 60.510 40.000 2.85 0.00 0.00 2.83
2223 2536 6.152379 CCCTTGTTCTAAAGATGCTTTGTTC 58.848 40.000 2.85 0.00 0.00 3.18
2224 2537 6.015940 CCCTTGTTCTAAAGATGCTTTGTTCT 60.016 38.462 2.85 0.00 0.00 3.01
2225 2538 7.428826 CCTTGTTCTAAAGATGCTTTGTTCTT 58.571 34.615 2.85 0.00 33.69 2.52
2226 2539 7.922811 CCTTGTTCTAAAGATGCTTTGTTCTTT 59.077 33.333 2.85 3.69 42.96 2.52
2227 2540 9.305925 CTTGTTCTAAAGATGCTTTGTTCTTTT 57.694 29.630 3.53 0.00 41.26 2.27
2229 2542 9.730420 TGTTCTAAAGATGCTTTGTTCTTTTAC 57.270 29.630 3.53 2.28 41.26 2.01
2230 2543 9.181805 GTTCTAAAGATGCTTTGTTCTTTTACC 57.818 33.333 3.53 0.00 41.26 2.85
2231 2544 7.882179 TCTAAAGATGCTTTGTTCTTTTACCC 58.118 34.615 3.53 0.00 41.26 3.69
2232 2545 5.468540 AAGATGCTTTGTTCTTTTACCCC 57.531 39.130 0.00 0.00 0.00 4.95
2233 2546 4.740902 AGATGCTTTGTTCTTTTACCCCT 58.259 39.130 0.00 0.00 0.00 4.79
2234 2547 4.524328 AGATGCTTTGTTCTTTTACCCCTG 59.476 41.667 0.00 0.00 0.00 4.45
2235 2548 2.962421 TGCTTTGTTCTTTTACCCCTGG 59.038 45.455 0.00 0.00 0.00 4.45
2236 2549 2.963101 GCTTTGTTCTTTTACCCCTGGT 59.037 45.455 0.00 0.00 40.16 4.00
2237 2550 4.146564 GCTTTGTTCTTTTACCCCTGGTA 58.853 43.478 0.00 0.00 37.09 3.25
2247 2560 7.296098 TCTTTTACCCCTGGTACATTAAAACA 58.704 34.615 0.00 0.00 37.97 2.83
2248 2561 7.449086 TCTTTTACCCCTGGTACATTAAAACAG 59.551 37.037 0.00 0.00 37.97 3.16
2251 2564 5.899278 ACCCCTGGTACATTAAAACAGAAT 58.101 37.500 0.00 0.00 38.20 2.40
2285 2598 7.278424 TCAAAAGCCAAGAACAGATTTCAAAAG 59.722 33.333 0.00 0.00 0.00 2.27
2289 2602 5.737063 GCCAAGAACAGATTTCAAAAGCAGA 60.737 40.000 0.00 0.00 0.00 4.26
2294 2607 6.266103 AGAACAGATTTCAAAAGCAGATTCCA 59.734 34.615 0.00 0.00 0.00 3.53
2301 2614 3.250762 TCAAAAGCAGATTCCACTTCACG 59.749 43.478 0.00 0.00 0.00 4.35
2308 2621 4.497340 GCAGATTCCACTTCACGACAAAAA 60.497 41.667 0.00 0.00 0.00 1.94
2325 2638 5.192927 ACAAAAACAGAGTGAAGTGGATGA 58.807 37.500 0.00 0.00 0.00 2.92
2346 2659 1.382522 ACAACAACACAGTGCAGGAG 58.617 50.000 0.00 0.00 0.00 3.69
2361 2674 1.968540 GGAGCAGCTGAACCCACAC 60.969 63.158 20.43 0.00 0.00 3.82
2362 2675 1.227943 GAGCAGCTGAACCCACACA 60.228 57.895 20.43 0.00 0.00 3.72
2416 2729 2.432146 TCAGCAGCAGGAATAGTAGTGG 59.568 50.000 0.00 0.00 0.00 4.00
2419 2732 3.713764 AGCAGCAGGAATAGTAGTGGAAT 59.286 43.478 0.00 0.00 0.00 3.01
2467 2780 0.739462 TACAAACGGCCGCTCAGATG 60.739 55.000 28.58 17.07 0.00 2.90
2470 2783 2.449031 AAACGGCCGCTCAGATGACA 62.449 55.000 28.58 0.00 0.00 3.58
2471 2784 2.584418 CGGCCGCTCAGATGACAG 60.584 66.667 14.67 0.00 0.00 3.51
2485 2798 5.045359 TCAGATGACAGGGAAATCACATTCT 60.045 40.000 0.00 0.00 0.00 2.40
2492 2805 6.484288 ACAGGGAAATCACATTCTATGTTGA 58.516 36.000 0.00 0.00 42.70 3.18
2504 2817 9.154847 CACATTCTATGTTGACAATCAAGTCTA 57.845 33.333 0.00 0.00 42.70 2.59
2508 2821 7.261325 TCTATGTTGACAATCAAGTCTAGCTC 58.739 38.462 0.00 0.00 37.00 4.09
2510 2823 5.610398 TGTTGACAATCAAGTCTAGCTCAA 58.390 37.500 0.00 0.00 37.00 3.02
2511 2824 5.698089 TGTTGACAATCAAGTCTAGCTCAAG 59.302 40.000 0.00 0.00 37.00 3.02
2512 2825 4.248859 TGACAATCAAGTCTAGCTCAAGC 58.751 43.478 0.00 0.00 39.27 4.01
2513 2826 4.020751 TGACAATCAAGTCTAGCTCAAGCT 60.021 41.667 9.82 9.82 44.09 3.74
2514 2827 6.081563 TGACAATCAAGTCTAGCTCAAGCTG 61.082 44.000 14.70 5.15 43.51 4.24
2538 2854 4.812626 CAGCTTGCAGGAACATTTCTTTTT 59.187 37.500 0.00 0.00 0.00 1.94
2553 2869 9.394767 ACATTTCTTTTTAAACAGAGGCAAAAT 57.605 25.926 4.36 0.00 0.00 1.82
2556 2872 9.877178 TTTCTTTTTAAACAGAGGCAAAATACA 57.123 25.926 4.36 0.00 0.00 2.29
2557 2873 8.865590 TCTTTTTAAACAGAGGCAAAATACAC 57.134 30.769 0.00 0.00 0.00 2.90
2558 2874 7.646130 TCTTTTTAAACAGAGGCAAAATACACG 59.354 33.333 0.00 0.00 0.00 4.49
2559 2875 6.621316 TTTAAACAGAGGCAAAATACACGA 57.379 33.333 0.00 0.00 0.00 4.35
2560 2876 4.483476 AAACAGAGGCAAAATACACGAC 57.517 40.909 0.00 0.00 0.00 4.34
2561 2877 3.120321 ACAGAGGCAAAATACACGACA 57.880 42.857 0.00 0.00 0.00 4.35
2562 2878 3.674997 ACAGAGGCAAAATACACGACAT 58.325 40.909 0.00 0.00 0.00 3.06
2563 2879 3.436704 ACAGAGGCAAAATACACGACATG 59.563 43.478 0.00 0.00 0.00 3.21
2564 2880 3.436704 CAGAGGCAAAATACACGACATGT 59.563 43.478 0.00 0.00 46.06 3.21
2575 2891 2.960171 CACGACATGTGCGATACAATG 58.040 47.619 19.74 6.90 43.77 2.82
2576 2892 2.348362 CACGACATGTGCGATACAATGT 59.652 45.455 19.74 0.00 43.77 2.71
2577 2893 3.000041 ACGACATGTGCGATACAATGTT 59.000 40.909 19.74 0.00 43.77 2.71
2578 2894 3.062099 ACGACATGTGCGATACAATGTTC 59.938 43.478 19.74 0.00 43.77 3.18
2579 2895 3.544048 CGACATGTGCGATACAATGTTCC 60.544 47.826 1.15 0.00 43.77 3.62
2580 2896 2.682856 ACATGTGCGATACAATGTTCCC 59.317 45.455 0.00 0.00 43.77 3.97
2581 2897 1.745232 TGTGCGATACAATGTTCCCC 58.255 50.000 0.00 0.00 36.06 4.81
2582 2898 1.003696 TGTGCGATACAATGTTCCCCA 59.996 47.619 0.00 0.00 36.06 4.96
2583 2899 1.670811 GTGCGATACAATGTTCCCCAG 59.329 52.381 0.00 0.00 0.00 4.45
2584 2900 1.280710 TGCGATACAATGTTCCCCAGT 59.719 47.619 0.00 0.00 0.00 4.00
2585 2901 2.290641 TGCGATACAATGTTCCCCAGTT 60.291 45.455 0.00 0.00 0.00 3.16
2586 2902 2.752903 GCGATACAATGTTCCCCAGTTT 59.247 45.455 0.00 0.00 0.00 2.66
2587 2903 3.181500 GCGATACAATGTTCCCCAGTTTC 60.181 47.826 0.00 0.00 0.00 2.78
2588 2904 4.261801 CGATACAATGTTCCCCAGTTTCT 58.738 43.478 0.00 0.00 0.00 2.52
2589 2905 4.700213 CGATACAATGTTCCCCAGTTTCTT 59.300 41.667 0.00 0.00 0.00 2.52
2590 2906 5.878116 CGATACAATGTTCCCCAGTTTCTTA 59.122 40.000 0.00 0.00 0.00 2.10
2591 2907 6.037172 CGATACAATGTTCCCCAGTTTCTTAG 59.963 42.308 0.00 0.00 0.00 2.18
2592 2908 3.826729 ACAATGTTCCCCAGTTTCTTAGC 59.173 43.478 0.00 0.00 0.00 3.09
2593 2909 3.806949 ATGTTCCCCAGTTTCTTAGCA 57.193 42.857 0.00 0.00 0.00 3.49
2594 2910 2.858745 TGTTCCCCAGTTTCTTAGCAC 58.141 47.619 0.00 0.00 0.00 4.40
2595 2911 2.160205 GTTCCCCAGTTTCTTAGCACC 58.840 52.381 0.00 0.00 0.00 5.01
2596 2912 0.696501 TCCCCAGTTTCTTAGCACCC 59.303 55.000 0.00 0.00 0.00 4.61
2597 2913 0.676782 CCCCAGTTTCTTAGCACCCG 60.677 60.000 0.00 0.00 0.00 5.28
2598 2914 1.305930 CCCAGTTTCTTAGCACCCGC 61.306 60.000 0.00 0.00 38.99 6.13
2599 2915 0.605319 CCAGTTTCTTAGCACCCGCA 60.605 55.000 0.00 0.00 42.27 5.69
2600 2916 1.234821 CAGTTTCTTAGCACCCGCAA 58.765 50.000 0.00 0.00 42.27 4.85
2601 2917 1.812571 CAGTTTCTTAGCACCCGCAAT 59.187 47.619 0.00 0.00 42.27 3.56
2602 2918 1.812571 AGTTTCTTAGCACCCGCAATG 59.187 47.619 0.00 0.00 42.27 2.82
2603 2919 1.810151 GTTTCTTAGCACCCGCAATGA 59.190 47.619 0.00 0.00 42.27 2.57
2604 2920 1.448985 TTCTTAGCACCCGCAATGAC 58.551 50.000 0.00 0.00 42.27 3.06
2605 2921 0.392461 TCTTAGCACCCGCAATGACC 60.392 55.000 0.00 0.00 42.27 4.02
2606 2922 1.376609 CTTAGCACCCGCAATGACCC 61.377 60.000 0.00 0.00 42.27 4.46
2607 2923 2.130821 TTAGCACCCGCAATGACCCA 62.131 55.000 0.00 0.00 42.27 4.51
2608 2924 2.130821 TAGCACCCGCAATGACCCAA 62.131 55.000 0.00 0.00 42.27 4.12
2609 2925 2.569354 GCACCCGCAATGACCCAAA 61.569 57.895 0.00 0.00 38.36 3.28
2610 2926 1.586028 CACCCGCAATGACCCAAAG 59.414 57.895 0.00 0.00 0.00 2.77
2611 2927 2.275380 ACCCGCAATGACCCAAAGC 61.275 57.895 0.00 0.00 0.00 3.51
2612 2928 1.978617 CCCGCAATGACCCAAAGCT 60.979 57.895 0.00 0.00 0.00 3.74
2613 2929 0.679640 CCCGCAATGACCCAAAGCTA 60.680 55.000 0.00 0.00 0.00 3.32
2614 2930 1.173043 CCGCAATGACCCAAAGCTAA 58.827 50.000 0.00 0.00 0.00 3.09
2615 2931 1.750778 CCGCAATGACCCAAAGCTAAT 59.249 47.619 0.00 0.00 0.00 1.73
2616 2932 2.166254 CCGCAATGACCCAAAGCTAATT 59.834 45.455 0.00 0.00 0.00 1.40
2617 2933 3.380004 CCGCAATGACCCAAAGCTAATTA 59.620 43.478 0.00 0.00 0.00 1.40
2618 2934 4.351192 CGCAATGACCCAAAGCTAATTAC 58.649 43.478 0.00 0.00 0.00 1.89
2619 2935 4.096382 CGCAATGACCCAAAGCTAATTACT 59.904 41.667 0.00 0.00 0.00 2.24
2620 2936 5.582550 GCAATGACCCAAAGCTAATTACTC 58.417 41.667 0.00 0.00 0.00 2.59
2621 2937 5.358160 GCAATGACCCAAAGCTAATTACTCT 59.642 40.000 0.00 0.00 0.00 3.24
2622 2938 6.458888 GCAATGACCCAAAGCTAATTACTCTC 60.459 42.308 0.00 0.00 0.00 3.20
2623 2939 4.755411 TGACCCAAAGCTAATTACTCTCG 58.245 43.478 0.00 0.00 0.00 4.04
2624 2940 4.222145 TGACCCAAAGCTAATTACTCTCGT 59.778 41.667 0.00 0.00 0.00 4.18
2625 2941 4.504858 ACCCAAAGCTAATTACTCTCGTG 58.495 43.478 0.00 0.00 0.00 4.35
2626 2942 4.222145 ACCCAAAGCTAATTACTCTCGTGA 59.778 41.667 0.00 0.00 0.00 4.35
2627 2943 5.104900 ACCCAAAGCTAATTACTCTCGTGAT 60.105 40.000 0.00 0.00 0.00 3.06
2628 2944 6.097839 ACCCAAAGCTAATTACTCTCGTGATA 59.902 38.462 0.00 0.00 0.00 2.15
2629 2945 7.155328 CCCAAAGCTAATTACTCTCGTGATAT 58.845 38.462 0.00 0.00 0.00 1.63
2630 2946 8.304596 CCCAAAGCTAATTACTCTCGTGATATA 58.695 37.037 0.00 0.00 0.00 0.86
2631 2947 9.692749 CCAAAGCTAATTACTCTCGTGATATAA 57.307 33.333 0.00 0.00 0.00 0.98
2642 2958 8.911918 ACTCTCGTGATATAATGTTCTCTAGT 57.088 34.615 0.00 0.00 0.00 2.57
2643 2959 9.344772 ACTCTCGTGATATAATGTTCTCTAGTT 57.655 33.333 0.00 0.00 0.00 2.24
2653 2969 8.950208 ATAATGTTCTCTAGTTTCTTAGCACC 57.050 34.615 0.00 0.00 0.00 5.01
2654 2970 5.148651 TGTTCTCTAGTTTCTTAGCACCC 57.851 43.478 0.00 0.00 0.00 4.61
2655 2971 4.174762 GTTCTCTAGTTTCTTAGCACCCG 58.825 47.826 0.00 0.00 0.00 5.28
2656 2972 2.165845 TCTCTAGTTTCTTAGCACCCGC 59.834 50.000 0.00 0.00 38.99 6.13
2657 2973 1.897133 TCTAGTTTCTTAGCACCCGCA 59.103 47.619 0.00 0.00 42.27 5.69
2658 2974 2.300723 TCTAGTTTCTTAGCACCCGCAA 59.699 45.455 0.00 0.00 42.27 4.85
2659 2975 2.200373 AGTTTCTTAGCACCCGCAAT 57.800 45.000 0.00 0.00 42.27 3.56
2660 2976 1.812571 AGTTTCTTAGCACCCGCAATG 59.187 47.619 0.00 0.00 42.27 2.82
2661 2977 1.810151 GTTTCTTAGCACCCGCAATGA 59.190 47.619 0.00 0.00 42.27 2.57
2662 2978 1.448985 TTCTTAGCACCCGCAATGAC 58.551 50.000 0.00 0.00 42.27 3.06
2663 2979 0.613260 TCTTAGCACCCGCAATGACT 59.387 50.000 0.00 0.00 42.27 3.41
2664 2980 1.009829 CTTAGCACCCGCAATGACTC 58.990 55.000 0.00 0.00 42.27 3.36
2665 2981 0.323302 TTAGCACCCGCAATGACTCA 59.677 50.000 0.00 0.00 42.27 3.41
2666 2982 0.323302 TAGCACCCGCAATGACTCAA 59.677 50.000 0.00 0.00 42.27 3.02
2667 2983 0.537143 AGCACCCGCAATGACTCAAA 60.537 50.000 0.00 0.00 42.27 2.69
2668 2984 0.313672 GCACCCGCAATGACTCAAAA 59.686 50.000 0.00 0.00 38.36 2.44
2669 2985 1.930371 GCACCCGCAATGACTCAAAAC 60.930 52.381 0.00 0.00 38.36 2.43
2670 2986 1.608590 CACCCGCAATGACTCAAAACT 59.391 47.619 0.00 0.00 0.00 2.66
2671 2987 2.034558 CACCCGCAATGACTCAAAACTT 59.965 45.455 0.00 0.00 0.00 2.66
2672 2988 2.693074 ACCCGCAATGACTCAAAACTTT 59.307 40.909 0.00 0.00 0.00 2.66
2673 2989 3.052036 CCCGCAATGACTCAAAACTTTG 58.948 45.455 0.00 0.00 39.48 2.77
2674 2990 2.472488 CCGCAATGACTCAAAACTTTGC 59.528 45.455 0.00 0.00 40.90 3.68
2675 2991 2.472488 CGCAATGACTCAAAACTTTGCC 59.528 45.455 0.00 0.00 41.08 4.52
2676 2992 3.721035 GCAATGACTCAAAACTTTGCCT 58.279 40.909 0.00 0.00 39.52 4.75
2677 2993 3.737774 GCAATGACTCAAAACTTTGCCTC 59.262 43.478 0.00 0.00 39.52 4.70
2678 2994 4.737352 GCAATGACTCAAAACTTTGCCTCA 60.737 41.667 0.00 1.74 39.52 3.86
2679 2995 4.574599 ATGACTCAAAACTTTGCCTCAC 57.425 40.909 0.00 0.00 38.05 3.51
2680 2996 2.687935 TGACTCAAAACTTTGCCTCACC 59.312 45.455 0.00 0.00 38.05 4.02
2681 2997 2.952310 GACTCAAAACTTTGCCTCACCT 59.048 45.455 0.00 0.00 38.05 4.00
2682 2998 4.134563 GACTCAAAACTTTGCCTCACCTA 58.865 43.478 0.00 0.00 38.05 3.08
2683 2999 4.532834 ACTCAAAACTTTGCCTCACCTAA 58.467 39.130 0.00 0.00 38.05 2.69
2684 3000 4.580580 ACTCAAAACTTTGCCTCACCTAAG 59.419 41.667 0.00 0.00 38.05 2.18
2685 3001 4.532834 TCAAAACTTTGCCTCACCTAAGT 58.467 39.130 0.00 0.00 38.05 2.24
2686 3002 4.338118 TCAAAACTTTGCCTCACCTAAGTG 59.662 41.667 0.00 0.00 40.44 3.16
2687 3003 3.577805 AACTTTGCCTCACCTAAGTGT 57.422 42.857 0.00 0.00 44.83 3.55
2688 3004 3.577805 ACTTTGCCTCACCTAAGTGTT 57.422 42.857 0.00 0.00 44.83 3.32
2689 3005 3.898482 ACTTTGCCTCACCTAAGTGTTT 58.102 40.909 0.00 0.00 44.83 2.83
2690 3006 3.883489 ACTTTGCCTCACCTAAGTGTTTC 59.117 43.478 0.00 0.00 44.83 2.78
2691 3007 3.857157 TTGCCTCACCTAAGTGTTTCT 57.143 42.857 0.00 0.00 44.83 2.52
2692 3008 3.402628 TGCCTCACCTAAGTGTTTCTC 57.597 47.619 0.00 0.00 44.83 2.87
2693 3009 2.038557 TGCCTCACCTAAGTGTTTCTCC 59.961 50.000 0.00 0.00 44.83 3.71
2694 3010 2.615747 GCCTCACCTAAGTGTTTCTCCC 60.616 54.545 0.00 0.00 44.83 4.30
2695 3011 2.353803 CCTCACCTAAGTGTTTCTCCCG 60.354 54.545 0.00 0.00 44.83 5.14
2696 3012 2.299297 CTCACCTAAGTGTTTCTCCCGT 59.701 50.000 0.00 0.00 44.83 5.28
2697 3013 2.701951 TCACCTAAGTGTTTCTCCCGTT 59.298 45.455 0.00 0.00 44.83 4.44
2698 3014 3.064931 CACCTAAGTGTTTCTCCCGTTC 58.935 50.000 0.00 0.00 39.30 3.95
2699 3015 2.038164 ACCTAAGTGTTTCTCCCGTTCC 59.962 50.000 0.00 0.00 0.00 3.62
2700 3016 2.038033 CCTAAGTGTTTCTCCCGTTCCA 59.962 50.000 0.00 0.00 0.00 3.53
2701 3017 2.721425 AAGTGTTTCTCCCGTTCCAA 57.279 45.000 0.00 0.00 0.00 3.53
2702 3018 2.721425 AGTGTTTCTCCCGTTCCAAA 57.279 45.000 0.00 0.00 0.00 3.28
2703 3019 3.223674 AGTGTTTCTCCCGTTCCAAAT 57.776 42.857 0.00 0.00 0.00 2.32
2704 3020 2.884639 AGTGTTTCTCCCGTTCCAAATG 59.115 45.455 0.00 0.00 0.00 2.32
2705 3021 2.030274 GTGTTTCTCCCGTTCCAAATGG 60.030 50.000 0.00 0.00 37.31 3.16
2706 3022 2.235891 GTTTCTCCCGTTCCAAATGGT 58.764 47.619 0.00 0.00 35.71 3.55
2707 3023 2.626266 GTTTCTCCCGTTCCAAATGGTT 59.374 45.455 0.00 0.00 35.71 3.67
2708 3024 2.668144 TCTCCCGTTCCAAATGGTTT 57.332 45.000 0.00 0.00 35.71 3.27
2709 3025 3.791953 TCTCCCGTTCCAAATGGTTTA 57.208 42.857 0.00 0.00 35.71 2.01
2710 3026 3.681593 TCTCCCGTTCCAAATGGTTTAG 58.318 45.455 0.00 0.00 35.71 1.85
2711 3027 3.328343 TCTCCCGTTCCAAATGGTTTAGA 59.672 43.478 0.00 0.00 35.71 2.10
2712 3028 4.076394 CTCCCGTTCCAAATGGTTTAGAA 58.924 43.478 0.00 0.00 35.71 2.10
2713 3029 4.471548 TCCCGTTCCAAATGGTTTAGAAA 58.528 39.130 0.00 0.00 35.71 2.52
2714 3030 4.278919 TCCCGTTCCAAATGGTTTAGAAAC 59.721 41.667 0.00 0.00 35.71 2.78
2715 3031 4.223659 CCGTTCCAAATGGTTTAGAAACG 58.776 43.478 12.33 12.33 39.77 3.60
2716 3032 4.023878 CCGTTCCAAATGGTTTAGAAACGA 60.024 41.667 18.00 0.00 39.77 3.85
2717 3033 5.144359 CGTTCCAAATGGTTTAGAAACGAG 58.856 41.667 13.47 0.00 39.77 4.18
2718 3034 4.759516 TCCAAATGGTTTAGAAACGAGC 57.240 40.909 0.00 0.00 39.77 5.03
2719 3035 4.138290 TCCAAATGGTTTAGAAACGAGCA 58.862 39.130 0.00 0.00 39.77 4.26
2720 3036 4.764823 TCCAAATGGTTTAGAAACGAGCAT 59.235 37.500 0.00 0.00 39.77 3.79
2721 3037 5.941058 TCCAAATGGTTTAGAAACGAGCATA 59.059 36.000 0.00 0.00 39.77 3.14
2722 3038 6.431543 TCCAAATGGTTTAGAAACGAGCATAA 59.568 34.615 0.00 0.00 39.77 1.90
2723 3039 7.122055 TCCAAATGGTTTAGAAACGAGCATAAT 59.878 33.333 0.00 0.00 39.77 1.28
2724 3040 7.759433 CCAAATGGTTTAGAAACGAGCATAATT 59.241 33.333 0.00 0.00 39.77 1.40
2725 3041 9.781834 CAAATGGTTTAGAAACGAGCATAATTA 57.218 29.630 0.00 0.00 39.77 1.40
2726 3042 9.783256 AAATGGTTTAGAAACGAGCATAATTAC 57.217 29.630 0.00 0.00 39.77 1.89
2727 3043 8.732746 ATGGTTTAGAAACGAGCATAATTACT 57.267 30.769 0.00 0.00 39.77 2.24
2728 3044 8.193250 TGGTTTAGAAACGAGCATAATTACTC 57.807 34.615 0.00 0.00 39.77 2.59
2729 3045 8.038944 TGGTTTAGAAACGAGCATAATTACTCT 58.961 33.333 0.00 0.00 39.77 3.24
2730 3046 8.541312 GGTTTAGAAACGAGCATAATTACTCTC 58.459 37.037 0.00 5.98 39.77 3.20
2740 3056 9.723447 CGAGCATAATTACTCTCGTGATATAAT 57.277 33.333 21.06 0.00 42.24 1.28
2747 3063 7.834881 TTACTCTCGTGATATAATGTTCCCT 57.165 36.000 0.00 0.00 0.00 4.20
2748 3064 8.929260 TTACTCTCGTGATATAATGTTCCCTA 57.071 34.615 0.00 0.00 0.00 3.53
2749 3065 7.455641 ACTCTCGTGATATAATGTTCCCTAG 57.544 40.000 0.00 0.00 0.00 3.02
2750 3066 7.005296 ACTCTCGTGATATAATGTTCCCTAGT 58.995 38.462 0.00 0.00 0.00 2.57
2751 3067 7.506261 ACTCTCGTGATATAATGTTCCCTAGTT 59.494 37.037 0.00 0.00 0.00 2.24
2752 3068 8.246430 TCTCGTGATATAATGTTCCCTAGTTT 57.754 34.615 0.00 0.00 0.00 2.66
2753 3069 8.358148 TCTCGTGATATAATGTTCCCTAGTTTC 58.642 37.037 0.00 0.00 0.00 2.78
2754 3070 8.246430 TCGTGATATAATGTTCCCTAGTTTCT 57.754 34.615 0.00 0.00 0.00 2.52
2755 3071 8.701895 TCGTGATATAATGTTCCCTAGTTTCTT 58.298 33.333 0.00 0.00 0.00 2.52
2756 3072 9.976511 CGTGATATAATGTTCCCTAGTTTCTTA 57.023 33.333 0.00 0.00 0.00 2.10
2758 3074 9.998106 TGATATAATGTTCCCTAGTTTCTTAGC 57.002 33.333 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
528 534 8.357796 TGCGAAAATTTTATGATTTCACACAA 57.642 26.923 2.75 0.00 33.68 3.33
637 643 2.501723 ACCCTGACATATGAGCGTTCTT 59.498 45.455 10.38 0.00 0.00 2.52
707 714 1.576920 CAAACATGGCCGTGCGTTA 59.423 52.632 25.30 0.00 0.00 3.18
717 724 7.148590 GCCTTTTTGATTTACTAGCAAACATGG 60.149 37.037 0.00 0.00 31.89 3.66
736 743 3.257375 GTCGGAACCAATAAGGCCTTTTT 59.743 43.478 26.08 19.74 43.14 1.94
740 747 0.255033 GGTCGGAACCAATAAGGCCT 59.745 55.000 0.00 0.00 45.68 5.19
741 748 1.093496 CGGTCGGAACCAATAAGGCC 61.093 60.000 0.00 0.00 46.86 5.19
742 749 0.108041 TCGGTCGGAACCAATAAGGC 60.108 55.000 0.00 0.00 46.86 4.35
743 750 1.648504 GTCGGTCGGAACCAATAAGG 58.351 55.000 0.00 0.00 46.86 2.69
744 751 1.648504 GGTCGGTCGGAACCAATAAG 58.351 55.000 0.00 0.00 46.86 1.73
745 752 0.108709 CGGTCGGTCGGAACCAATAA 60.109 55.000 0.00 0.00 46.86 1.40
746 753 0.964860 TCGGTCGGTCGGAACCAATA 60.965 55.000 0.00 0.00 46.86 1.90
747 754 2.263540 CGGTCGGTCGGAACCAAT 59.736 61.111 0.00 0.00 46.86 3.16
748 755 2.911509 TCGGTCGGTCGGAACCAA 60.912 61.111 0.00 0.00 46.86 3.67
749 756 3.673484 GTCGGTCGGTCGGAACCA 61.673 66.667 0.00 0.00 46.86 3.67
750 757 4.426112 GGTCGGTCGGTCGGAACC 62.426 72.222 0.00 0.00 42.66 3.62
751 758 4.426112 GGGTCGGTCGGTCGGAAC 62.426 72.222 0.00 0.00 33.19 3.62
752 759 4.972733 TGGGTCGGTCGGTCGGAA 62.973 66.667 0.00 0.00 0.00 4.30
755 762 3.812019 CTCTGGGTCGGTCGGTCG 61.812 72.222 0.00 0.00 0.00 4.79
756 763 2.675772 ACTCTGGGTCGGTCGGTC 60.676 66.667 0.00 0.00 0.00 4.79
757 764 2.675772 GACTCTGGGTCGGTCGGT 60.676 66.667 0.00 0.00 35.07 4.69
764 771 2.126031 GAACCGCGACTCTGGGTC 60.126 66.667 8.23 0.00 41.28 4.46
765 772 3.692406 GGAACCGCGACTCTGGGT 61.692 66.667 8.23 0.00 34.99 4.51
766 773 3.382832 AGGAACCGCGACTCTGGG 61.383 66.667 8.23 0.00 0.00 4.45
767 774 2.125912 CAGGAACCGCGACTCTGG 60.126 66.667 8.23 0.00 0.00 3.86
768 775 2.125912 CCAGGAACCGCGACTCTG 60.126 66.667 8.23 9.62 0.00 3.35
769 776 3.382832 CCCAGGAACCGCGACTCT 61.383 66.667 8.23 0.00 0.00 3.24
770 777 3.644399 GACCCAGGAACCGCGACTC 62.644 68.421 8.23 2.73 0.00 3.36
771 778 3.692406 GACCCAGGAACCGCGACT 61.692 66.667 8.23 0.00 0.00 4.18
772 779 4.754667 GGACCCAGGAACCGCGAC 62.755 72.222 8.23 0.00 0.00 5.19
777 784 2.979649 GAGACGGACCCAGGAACC 59.020 66.667 0.00 0.00 0.00 3.62
784 791 2.435586 TCGACTCGAGACGGACCC 60.436 66.667 30.94 6.63 34.25 4.46
828 835 3.470567 CGTGGTGAGTTCGAGCGC 61.471 66.667 0.00 0.00 0.00 5.92
830 837 1.276145 GACACGTGGTGAGTTCGAGC 61.276 60.000 21.57 0.00 36.96 5.03
832 839 1.009335 CGACACGTGGTGAGTTCGA 60.009 57.895 21.57 0.00 36.96 3.71
840 847 2.026590 GACGGTTCGACACGTGGT 59.973 61.111 21.57 5.73 44.24 4.16
866 873 2.202987 GAGCATGCAGGAGGACGG 60.203 66.667 21.98 0.00 0.00 4.79
868 875 2.202987 CGGAGCATGCAGGAGGAC 60.203 66.667 21.98 0.46 0.00 3.85
871 878 4.478371 TGCCGGAGCATGCAGGAG 62.478 66.667 24.78 11.27 46.52 3.69
902 909 2.509336 GGATGGTCGCGTCTGGTG 60.509 66.667 5.77 0.00 0.00 4.17
903 910 2.680352 AGGATGGTCGCGTCTGGT 60.680 61.111 5.77 0.00 0.00 4.00
908 915 4.760047 GGTGCAGGATGGTCGCGT 62.760 66.667 5.77 0.00 35.86 6.01
914 921 4.580580 GGTTCTTTATAAGGTGCAGGATGG 59.419 45.833 0.00 0.00 35.86 3.51
923 930 2.678769 CGGCGGTGGTTCTTTATAAGGT 60.679 50.000 0.00 0.00 0.00 3.50
924 931 1.937899 CGGCGGTGGTTCTTTATAAGG 59.062 52.381 0.00 0.00 0.00 2.69
925 932 1.329599 GCGGCGGTGGTTCTTTATAAG 59.670 52.381 9.78 0.00 0.00 1.73
926 933 1.338864 TGCGGCGGTGGTTCTTTATAA 60.339 47.619 9.78 0.00 0.00 0.98
927 934 0.249676 TGCGGCGGTGGTTCTTTATA 59.750 50.000 9.78 0.00 0.00 0.98
928 935 1.003112 TGCGGCGGTGGTTCTTTAT 60.003 52.632 9.78 0.00 0.00 1.40
929 936 1.962306 GTGCGGCGGTGGTTCTTTA 60.962 57.895 9.78 0.00 0.00 1.85
930 937 3.284449 GTGCGGCGGTGGTTCTTT 61.284 61.111 9.78 0.00 0.00 2.52
948 955 1.007038 TTGGTCGTGGCGTCTGTAC 60.007 57.895 0.00 0.00 0.00 2.90
949 956 1.007038 GTTGGTCGTGGCGTCTGTA 60.007 57.895 0.00 0.00 0.00 2.74
950 957 2.279918 GTTGGTCGTGGCGTCTGT 60.280 61.111 0.00 0.00 0.00 3.41
951 958 3.403057 CGTTGGTCGTGGCGTCTG 61.403 66.667 0.00 0.00 34.52 3.51
954 961 4.224274 TTCCGTTGGTCGTGGCGT 62.224 61.111 0.00 0.00 37.94 5.68
960 967 3.927163 CTCCCCGTTCCGTTGGTCG 62.927 68.421 0.00 0.00 39.52 4.79
978 991 1.198637 GTGCTCATGTGCTTCTTGTCC 59.801 52.381 19.60 0.00 0.00 4.02
981 994 1.150827 TCGTGCTCATGTGCTTCTTG 58.849 50.000 19.60 6.22 0.00 3.02
984 997 0.376152 CCATCGTGCTCATGTGCTTC 59.624 55.000 19.60 11.93 0.00 3.86
985 998 1.651240 GCCATCGTGCTCATGTGCTT 61.651 55.000 19.60 1.11 0.00 3.91
988 1001 1.746239 TGGCCATCGTGCTCATGTG 60.746 57.895 0.00 0.00 0.00 3.21
992 1005 4.758251 CGGTGGCCATCGTGCTCA 62.758 66.667 30.46 0.00 0.00 4.26
1116 1132 2.125961 GTAGTGGACGGCGGGATCT 61.126 63.158 13.24 7.00 0.00 2.75
1165 1181 3.009714 GGAGAACTTCGGGGGCCT 61.010 66.667 0.84 0.00 0.00 5.19
1746 1771 0.846693 AATCGGCTTAGCTTCCCCAT 59.153 50.000 3.59 0.00 0.00 4.00
1761 1786 2.020016 CGCGCCAGAAACGAATCG 59.980 61.111 0.00 0.00 0.00 3.34
1818 1854 2.199236 GCGACCTATTTTACACTCCCG 58.801 52.381 0.00 0.00 0.00 5.14
1856 1893 1.137872 ACCGCTTCTATCAGCCTTCTG 59.862 52.381 0.00 0.00 41.67 3.02
1858 1895 1.576356 CACCGCTTCTATCAGCCTTC 58.424 55.000 0.00 0.00 36.31 3.46
1859 1896 0.462759 GCACCGCTTCTATCAGCCTT 60.463 55.000 0.00 0.00 36.31 4.35
1860 1897 1.144936 GCACCGCTTCTATCAGCCT 59.855 57.895 0.00 0.00 36.31 4.58
1861 1898 1.889573 GGCACCGCTTCTATCAGCC 60.890 63.158 0.00 0.00 36.31 4.85
1862 1899 0.878086 GAGGCACCGCTTCTATCAGC 60.878 60.000 0.00 0.00 31.81 4.26
1863 1900 0.749649 AGAGGCACCGCTTCTATCAG 59.250 55.000 0.00 0.00 43.05 2.90
1864 1901 0.461548 CAGAGGCACCGCTTCTATCA 59.538 55.000 0.00 0.00 43.00 2.15
1865 1902 0.747255 TCAGAGGCACCGCTTCTATC 59.253 55.000 0.00 0.00 43.00 2.08
1867 1904 1.195115 ATTCAGAGGCACCGCTTCTA 58.805 50.000 0.00 0.00 43.00 2.10
1868 1905 1.195115 TATTCAGAGGCACCGCTTCT 58.805 50.000 0.00 0.00 45.71 2.85
1869 1906 2.024176 TTATTCAGAGGCACCGCTTC 57.976 50.000 0.00 0.00 34.80 3.86
1870 1907 2.359900 CTTTATTCAGAGGCACCGCTT 58.640 47.619 0.00 0.00 0.00 4.68
1871 1908 2.014068 GCTTTATTCAGAGGCACCGCT 61.014 52.381 0.00 0.00 0.00 5.52
1872 1909 0.378610 GCTTTATTCAGAGGCACCGC 59.621 55.000 0.00 0.00 0.00 5.68
1873 1910 0.652592 CGCTTTATTCAGAGGCACCG 59.347 55.000 0.00 0.00 0.00 4.94
1874 1911 1.398390 CACGCTTTATTCAGAGGCACC 59.602 52.381 0.00 0.00 0.00 5.01
1880 1917 1.086696 GCTGGCACGCTTTATTCAGA 58.913 50.000 0.00 0.00 0.00 3.27
1891 1928 3.002246 ACATATTTACATTCGCTGGCACG 59.998 43.478 3.58 3.58 0.00 5.34
1953 1993 2.278738 GGGCCATGACCCGGAATT 59.721 61.111 0.73 0.00 40.98 2.17
1975 2015 1.627864 TGTGAACTGGTCGAGATGGA 58.372 50.000 0.00 0.00 0.00 3.41
1986 2029 0.167470 CAAGGCGCAGATGTGAACTG 59.833 55.000 10.83 0.00 38.27 3.16
1995 2038 1.474330 TACAGAGATCAAGGCGCAGA 58.526 50.000 10.83 3.97 0.00 4.26
2006 2049 3.775316 AGGTCGATGGGTTTTACAGAGAT 59.225 43.478 0.00 0.00 0.00 2.75
2008 2051 3.611766 AGGTCGATGGGTTTTACAGAG 57.388 47.619 0.00 0.00 0.00 3.35
2088 2173 7.168905 ACTCTAGGAACCATACCTTTTTCTTG 58.831 38.462 0.00 0.00 38.76 3.02
2094 2179 6.697641 TTGAACTCTAGGAACCATACCTTT 57.302 37.500 0.00 0.00 38.76 3.11
2096 2181 5.337330 CGTTTGAACTCTAGGAACCATACCT 60.337 44.000 0.00 0.00 41.05 3.08
2102 2187 3.427863 CGAACGTTTGAACTCTAGGAACC 59.572 47.826 10.16 0.00 0.00 3.62
2104 2189 3.645884 CCGAACGTTTGAACTCTAGGAA 58.354 45.455 17.38 0.00 0.00 3.36
2106 2191 1.725164 GCCGAACGTTTGAACTCTAGG 59.275 52.381 17.38 4.18 0.00 3.02
2108 2193 2.400399 CAGCCGAACGTTTGAACTCTA 58.600 47.619 17.38 0.00 0.00 2.43
2123 2208 2.010145 TTCGAAGAATTCTCCAGCCG 57.990 50.000 8.78 7.91 44.75 5.52
2125 2210 3.189287 TGCTTTTCGAAGAATTCTCCAGC 59.811 43.478 8.78 10.21 44.75 4.85
2139 2224 0.593128 CCTGTTGGGAGTGCTTTTCG 59.407 55.000 0.00 0.00 37.23 3.46
2189 2401 4.911514 TTAGAACAAGGGCAAGTGAAAC 57.088 40.909 0.00 0.00 0.00 2.78
2200 2513 6.974965 AGAACAAAGCATCTTTAGAACAAGG 58.025 36.000 0.00 0.00 0.00 3.61
2201 2514 8.862550 AAAGAACAAAGCATCTTTAGAACAAG 57.137 30.769 0.00 0.00 42.47 3.16
2203 2516 9.730420 GTAAAAGAACAAAGCATCTTTAGAACA 57.270 29.630 1.60 0.00 43.24 3.18
2204 2517 9.181805 GGTAAAAGAACAAAGCATCTTTAGAAC 57.818 33.333 1.60 2.04 43.24 3.01
2205 2518 8.357402 GGGTAAAAGAACAAAGCATCTTTAGAA 58.643 33.333 1.60 0.00 43.24 2.10
2206 2519 7.039993 GGGGTAAAAGAACAAAGCATCTTTAGA 60.040 37.037 1.60 0.00 43.24 2.10
2207 2520 7.039714 AGGGGTAAAAGAACAAAGCATCTTTAG 60.040 37.037 1.60 0.00 43.24 1.85
2208 2521 6.780522 AGGGGTAAAAGAACAAAGCATCTTTA 59.219 34.615 1.60 0.00 43.24 1.85
2209 2522 5.602561 AGGGGTAAAAGAACAAAGCATCTTT 59.397 36.000 0.00 0.00 45.30 2.52
2210 2523 5.011023 CAGGGGTAAAAGAACAAAGCATCTT 59.989 40.000 0.00 0.00 37.49 2.40
2211 2524 4.524328 CAGGGGTAAAAGAACAAAGCATCT 59.476 41.667 0.00 0.00 0.00 2.90
2212 2525 4.321974 CCAGGGGTAAAAGAACAAAGCATC 60.322 45.833 0.00 0.00 0.00 3.91
2214 2527 2.962421 CCAGGGGTAAAAGAACAAAGCA 59.038 45.455 0.00 0.00 0.00 3.91
2215 2528 2.963101 ACCAGGGGTAAAAGAACAAAGC 59.037 45.455 0.00 0.00 32.11 3.51
2216 2529 5.134661 TGTACCAGGGGTAAAAGAACAAAG 58.865 41.667 0.00 0.00 40.12 2.77
2217 2530 5.126699 TGTACCAGGGGTAAAAGAACAAA 57.873 39.130 0.00 0.00 40.12 2.83
2219 2532 5.327737 AATGTACCAGGGGTAAAAGAACA 57.672 39.130 0.00 0.00 40.12 3.18
2221 2534 7.783596 TGTTTTAATGTACCAGGGGTAAAAGAA 59.216 33.333 0.00 0.00 40.12 2.52
2222 2535 7.296098 TGTTTTAATGTACCAGGGGTAAAAGA 58.704 34.615 0.00 0.00 40.12 2.52
2223 2536 7.449086 TCTGTTTTAATGTACCAGGGGTAAAAG 59.551 37.037 0.00 0.00 40.12 2.27
2224 2537 7.296098 TCTGTTTTAATGTACCAGGGGTAAAA 58.704 34.615 0.00 0.00 40.12 1.52
2225 2538 6.850234 TCTGTTTTAATGTACCAGGGGTAAA 58.150 36.000 0.00 0.00 40.12 2.01
2226 2539 6.451292 TCTGTTTTAATGTACCAGGGGTAA 57.549 37.500 0.00 0.00 40.12 2.85
2227 2540 6.451292 TTCTGTTTTAATGTACCAGGGGTA 57.549 37.500 0.00 0.00 37.09 3.69
2228 2541 5.327737 TTCTGTTTTAATGTACCAGGGGT 57.672 39.130 0.00 0.00 40.16 4.95
2229 2542 7.998964 AGATATTCTGTTTTAATGTACCAGGGG 59.001 37.037 0.00 0.00 0.00 4.79
2230 2543 8.980481 AGATATTCTGTTTTAATGTACCAGGG 57.020 34.615 0.00 0.00 0.00 4.45
2232 2545 9.722056 GCAAGATATTCTGTTTTAATGTACCAG 57.278 33.333 0.00 0.00 0.00 4.00
2233 2546 9.461312 AGCAAGATATTCTGTTTTAATGTACCA 57.539 29.630 0.00 0.00 0.00 3.25
2234 2547 9.937175 GAGCAAGATATTCTGTTTTAATGTACC 57.063 33.333 0.00 0.00 0.00 3.34
2247 2560 5.948162 TCTTGGCTTTTGAGCAAGATATTCT 59.052 36.000 0.00 0.00 36.33 2.40
2248 2561 6.199937 TCTTGGCTTTTGAGCAAGATATTC 57.800 37.500 0.00 0.00 36.33 1.75
2251 2564 4.826733 TGTTCTTGGCTTTTGAGCAAGATA 59.173 37.500 0.00 0.00 34.53 1.98
2257 2570 3.930634 ATCTGTTCTTGGCTTTTGAGC 57.069 42.857 0.00 0.00 0.00 4.26
2265 2578 4.370917 TGCTTTTGAAATCTGTTCTTGGC 58.629 39.130 0.00 0.00 0.00 4.52
2273 2586 6.022163 AGTGGAATCTGCTTTTGAAATCTG 57.978 37.500 0.00 0.00 0.00 2.90
2285 2598 1.795768 TGTCGTGAAGTGGAATCTGC 58.204 50.000 0.00 0.00 0.00 4.26
2289 2602 4.638421 TCTGTTTTTGTCGTGAAGTGGAAT 59.362 37.500 0.00 0.00 0.00 3.01
2294 2607 4.250464 TCACTCTGTTTTTGTCGTGAAGT 58.750 39.130 0.00 0.00 0.00 3.01
2301 2614 5.296780 TCATCCACTTCACTCTGTTTTTGTC 59.703 40.000 0.00 0.00 0.00 3.18
2308 2621 4.422073 TGTTTCATCCACTTCACTCTGT 57.578 40.909 0.00 0.00 0.00 3.41
2325 2638 2.164219 CTCCTGCACTGTGTTGTTGTTT 59.836 45.455 9.86 0.00 0.00 2.83
2346 2659 0.819259 TCTTGTGTGGGTTCAGCTGC 60.819 55.000 9.47 0.00 0.00 5.25
2361 2674 5.939883 TGTTTGGAGAAGACCATGTATCTTG 59.060 40.000 12.82 0.00 39.82 3.02
2362 2675 5.940470 GTGTTTGGAGAAGACCATGTATCTT 59.060 40.000 8.76 8.76 39.82 2.40
2416 2729 8.084684 AGAGCTTCTTTTTGTAATGGTGAATTC 58.915 33.333 0.00 0.00 0.00 2.17
2419 2732 6.959639 AGAGCTTCTTTTTGTAATGGTGAA 57.040 33.333 0.00 0.00 0.00 3.18
2455 2768 2.202987 CCTGTCATCTGAGCGGCC 60.203 66.667 0.00 0.00 0.00 6.13
2456 2769 2.202987 CCCTGTCATCTGAGCGGC 60.203 66.667 0.00 0.00 0.00 6.53
2467 2780 6.599244 TCAACATAGAATGTGATTTCCCTGTC 59.401 38.462 0.00 0.00 44.07 3.51
2470 2783 6.484288 TGTCAACATAGAATGTGATTTCCCT 58.516 36.000 0.00 0.00 44.07 4.20
2471 2784 6.757897 TGTCAACATAGAATGTGATTTCCC 57.242 37.500 0.00 0.00 44.07 3.97
2485 2798 6.935167 TGAGCTAGACTTGATTGTCAACATA 58.065 36.000 0.00 0.00 39.27 2.29
2514 2827 1.271656 AGAAATGTTCCTGCAAGCTGC 59.728 47.619 0.00 0.00 45.29 5.25
2515 2828 3.655276 AAGAAATGTTCCTGCAAGCTG 57.345 42.857 0.00 0.00 0.00 4.24
2530 2843 9.877178 TGTATTTTGCCTCTGTTTAAAAAGAAA 57.123 25.926 9.38 1.35 0.00 2.52
2538 2854 5.057819 TGTCGTGTATTTTGCCTCTGTTTA 58.942 37.500 0.00 0.00 0.00 2.01
2556 2872 2.616960 ACATTGTATCGCACATGTCGT 58.383 42.857 14.43 7.40 36.90 4.34
2557 2873 3.544048 GGAACATTGTATCGCACATGTCG 60.544 47.826 0.00 3.20 36.90 4.35
2558 2874 3.242739 GGGAACATTGTATCGCACATGTC 60.243 47.826 0.00 0.00 36.90 3.06
2559 2875 2.682856 GGGAACATTGTATCGCACATGT 59.317 45.455 0.00 0.00 36.90 3.21
2560 2876 2.033299 GGGGAACATTGTATCGCACATG 59.967 50.000 13.68 0.00 36.90 3.21
2561 2877 2.297701 GGGGAACATTGTATCGCACAT 58.702 47.619 13.68 0.00 36.90 3.21
2562 2878 1.003696 TGGGGAACATTGTATCGCACA 59.996 47.619 13.68 8.96 34.51 4.57
2563 2879 1.670811 CTGGGGAACATTGTATCGCAC 59.329 52.381 13.68 7.39 0.00 5.34
2564 2880 1.280710 ACTGGGGAACATTGTATCGCA 59.719 47.619 13.68 11.08 0.00 5.10
2565 2881 2.038387 ACTGGGGAACATTGTATCGC 57.962 50.000 0.00 0.00 0.00 4.58
2566 2882 4.261801 AGAAACTGGGGAACATTGTATCG 58.738 43.478 0.00 0.00 0.00 2.92
2567 2883 6.183360 GCTAAGAAACTGGGGAACATTGTATC 60.183 42.308 0.00 0.00 0.00 2.24
2568 2884 5.652452 GCTAAGAAACTGGGGAACATTGTAT 59.348 40.000 0.00 0.00 0.00 2.29
2569 2885 5.007682 GCTAAGAAACTGGGGAACATTGTA 58.992 41.667 0.00 0.00 0.00 2.41
2570 2886 3.826729 GCTAAGAAACTGGGGAACATTGT 59.173 43.478 0.00 0.00 0.00 2.71
2571 2887 3.826157 TGCTAAGAAACTGGGGAACATTG 59.174 43.478 0.00 0.00 0.00 2.82
2572 2888 3.826729 GTGCTAAGAAACTGGGGAACATT 59.173 43.478 0.00 0.00 0.00 2.71
2573 2889 3.421844 GTGCTAAGAAACTGGGGAACAT 58.578 45.455 0.00 0.00 0.00 2.71
2574 2890 2.488347 GGTGCTAAGAAACTGGGGAACA 60.488 50.000 0.00 0.00 0.00 3.18
2575 2891 2.160205 GGTGCTAAGAAACTGGGGAAC 58.840 52.381 0.00 0.00 0.00 3.62
2576 2892 1.074889 GGGTGCTAAGAAACTGGGGAA 59.925 52.381 0.00 0.00 0.00 3.97
2577 2893 0.696501 GGGTGCTAAGAAACTGGGGA 59.303 55.000 0.00 0.00 0.00 4.81
2578 2894 0.676782 CGGGTGCTAAGAAACTGGGG 60.677 60.000 0.00 0.00 0.00 4.96
2579 2895 1.305930 GCGGGTGCTAAGAAACTGGG 61.306 60.000 0.00 0.00 38.39 4.45
2580 2896 0.605319 TGCGGGTGCTAAGAAACTGG 60.605 55.000 0.00 0.00 43.34 4.00
2581 2897 1.234821 TTGCGGGTGCTAAGAAACTG 58.765 50.000 0.00 0.00 43.34 3.16
2582 2898 1.812571 CATTGCGGGTGCTAAGAAACT 59.187 47.619 0.00 0.00 43.34 2.66
2583 2899 1.810151 TCATTGCGGGTGCTAAGAAAC 59.190 47.619 0.00 0.00 43.34 2.78
2584 2900 1.810151 GTCATTGCGGGTGCTAAGAAA 59.190 47.619 0.00 0.00 43.34 2.52
2585 2901 1.448985 GTCATTGCGGGTGCTAAGAA 58.551 50.000 0.00 0.00 43.34 2.52
2586 2902 0.392461 GGTCATTGCGGGTGCTAAGA 60.392 55.000 0.00 0.00 43.34 2.10
2587 2903 1.376609 GGGTCATTGCGGGTGCTAAG 61.377 60.000 0.00 0.00 43.34 2.18
2588 2904 1.377987 GGGTCATTGCGGGTGCTAA 60.378 57.895 0.00 0.00 43.34 3.09
2589 2905 2.130821 TTGGGTCATTGCGGGTGCTA 62.131 55.000 0.00 0.00 43.34 3.49
2590 2906 2.992817 TTTGGGTCATTGCGGGTGCT 62.993 55.000 0.00 0.00 43.34 4.40
2591 2907 2.490993 CTTTGGGTCATTGCGGGTGC 62.491 60.000 0.00 0.00 43.20 5.01
2592 2908 1.586028 CTTTGGGTCATTGCGGGTG 59.414 57.895 0.00 0.00 0.00 4.61
2593 2909 2.275380 GCTTTGGGTCATTGCGGGT 61.275 57.895 0.00 0.00 0.00 5.28
2594 2910 0.679640 TAGCTTTGGGTCATTGCGGG 60.680 55.000 0.00 0.00 0.00 6.13
2595 2911 1.173043 TTAGCTTTGGGTCATTGCGG 58.827 50.000 0.00 0.00 0.00 5.69
2596 2912 3.508744 AATTAGCTTTGGGTCATTGCG 57.491 42.857 0.00 0.00 0.00 4.85
2597 2913 5.358160 AGAGTAATTAGCTTTGGGTCATTGC 59.642 40.000 0.00 0.00 0.00 3.56
2598 2914 6.238211 CGAGAGTAATTAGCTTTGGGTCATTG 60.238 42.308 0.00 0.00 0.00 2.82
2599 2915 5.817816 CGAGAGTAATTAGCTTTGGGTCATT 59.182 40.000 0.00 0.00 0.00 2.57
2600 2916 5.104900 ACGAGAGTAATTAGCTTTGGGTCAT 60.105 40.000 0.00 0.00 46.88 3.06
2601 2917 4.222145 ACGAGAGTAATTAGCTTTGGGTCA 59.778 41.667 0.00 0.00 46.88 4.02
2602 2918 4.756502 ACGAGAGTAATTAGCTTTGGGTC 58.243 43.478 0.00 0.00 46.88 4.46
2603 2919 4.820894 ACGAGAGTAATTAGCTTTGGGT 57.179 40.909 0.00 0.00 46.88 4.51
2628 2944 7.988028 GGGTGCTAAGAAACTAGAGAACATTAT 59.012 37.037 0.00 0.00 0.00 1.28
2629 2945 7.328737 GGGTGCTAAGAAACTAGAGAACATTA 58.671 38.462 0.00 0.00 0.00 1.90
2630 2946 6.174049 GGGTGCTAAGAAACTAGAGAACATT 58.826 40.000 0.00 0.00 0.00 2.71
2631 2947 5.624738 CGGGTGCTAAGAAACTAGAGAACAT 60.625 44.000 0.00 0.00 0.00 2.71
2632 2948 4.321750 CGGGTGCTAAGAAACTAGAGAACA 60.322 45.833 0.00 0.00 0.00 3.18
2633 2949 4.174762 CGGGTGCTAAGAAACTAGAGAAC 58.825 47.826 0.00 0.00 0.00 3.01
2634 2950 3.368116 GCGGGTGCTAAGAAACTAGAGAA 60.368 47.826 0.00 0.00 38.39 2.87
2635 2951 2.165845 GCGGGTGCTAAGAAACTAGAGA 59.834 50.000 0.00 0.00 38.39 3.10
2636 2952 2.094182 TGCGGGTGCTAAGAAACTAGAG 60.094 50.000 0.00 0.00 43.34 2.43
2637 2953 1.897133 TGCGGGTGCTAAGAAACTAGA 59.103 47.619 0.00 0.00 43.34 2.43
2638 2954 2.380084 TGCGGGTGCTAAGAAACTAG 57.620 50.000 0.00 0.00 43.34 2.57
2639 2955 2.843401 TTGCGGGTGCTAAGAAACTA 57.157 45.000 0.00 0.00 43.34 2.24
2640 2956 1.812571 CATTGCGGGTGCTAAGAAACT 59.187 47.619 0.00 0.00 43.34 2.66
2641 2957 1.810151 TCATTGCGGGTGCTAAGAAAC 59.190 47.619 0.00 0.00 43.34 2.78
2642 2958 1.810151 GTCATTGCGGGTGCTAAGAAA 59.190 47.619 0.00 0.00 43.34 2.52
2643 2959 1.003118 AGTCATTGCGGGTGCTAAGAA 59.997 47.619 0.00 0.00 43.34 2.52
2644 2960 0.613260 AGTCATTGCGGGTGCTAAGA 59.387 50.000 0.00 0.00 43.34 2.10
2645 2961 1.009829 GAGTCATTGCGGGTGCTAAG 58.990 55.000 0.00 0.00 43.34 2.18
2646 2962 0.323302 TGAGTCATTGCGGGTGCTAA 59.677 50.000 0.00 0.00 43.34 3.09
2647 2963 0.323302 TTGAGTCATTGCGGGTGCTA 59.677 50.000 0.00 0.00 43.34 3.49
2648 2964 0.537143 TTTGAGTCATTGCGGGTGCT 60.537 50.000 0.00 0.00 43.34 4.40
2649 2965 0.313672 TTTTGAGTCATTGCGGGTGC 59.686 50.000 0.00 0.00 43.20 5.01
2650 2966 1.608590 AGTTTTGAGTCATTGCGGGTG 59.391 47.619 0.00 0.00 0.00 4.61
2651 2967 1.981256 AGTTTTGAGTCATTGCGGGT 58.019 45.000 0.00 0.00 0.00 5.28
2652 2968 3.052036 CAAAGTTTTGAGTCATTGCGGG 58.948 45.455 0.00 0.00 40.55 6.13
2653 2969 2.472488 GCAAAGTTTTGAGTCATTGCGG 59.528 45.455 11.49 0.00 40.55 5.69
2654 2970 2.472488 GGCAAAGTTTTGAGTCATTGCG 59.528 45.455 17.70 0.00 42.94 4.85
2655 2971 3.721035 AGGCAAAGTTTTGAGTCATTGC 58.279 40.909 16.58 16.58 40.55 3.56
2656 2972 4.741676 GTGAGGCAAAGTTTTGAGTCATTG 59.258 41.667 8.70 0.00 40.55 2.82
2657 2973 4.202151 GGTGAGGCAAAGTTTTGAGTCATT 60.202 41.667 8.70 0.00 40.55 2.57
2658 2974 3.319122 GGTGAGGCAAAGTTTTGAGTCAT 59.681 43.478 8.70 0.00 40.55 3.06
2659 2975 2.687935 GGTGAGGCAAAGTTTTGAGTCA 59.312 45.455 8.70 6.93 40.55 3.41
2660 2976 2.952310 AGGTGAGGCAAAGTTTTGAGTC 59.048 45.455 8.70 4.67 40.55 3.36
2661 2977 3.018423 AGGTGAGGCAAAGTTTTGAGT 57.982 42.857 8.70 0.00 40.55 3.41
2662 2978 4.580580 ACTTAGGTGAGGCAAAGTTTTGAG 59.419 41.667 8.70 0.00 40.55 3.02
2663 2979 4.338118 CACTTAGGTGAGGCAAAGTTTTGA 59.662 41.667 8.70 0.00 45.61 2.69
2664 2980 4.097892 ACACTTAGGTGAGGCAAAGTTTTG 59.902 41.667 12.54 0.28 45.61 2.44
2665 2981 4.278310 ACACTTAGGTGAGGCAAAGTTTT 58.722 39.130 12.54 0.00 45.61 2.43
2666 2982 3.898482 ACACTTAGGTGAGGCAAAGTTT 58.102 40.909 12.54 0.00 45.61 2.66
2667 2983 3.577805 ACACTTAGGTGAGGCAAAGTT 57.422 42.857 12.54 0.00 45.61 2.66
2668 2984 3.577805 AACACTTAGGTGAGGCAAAGT 57.422 42.857 12.54 0.00 45.61 2.66
2669 2985 4.137543 AGAAACACTTAGGTGAGGCAAAG 58.862 43.478 12.54 0.00 45.61 2.77
2670 2986 4.134563 GAGAAACACTTAGGTGAGGCAAA 58.865 43.478 12.54 0.00 45.61 3.68
2671 2987 3.496160 GGAGAAACACTTAGGTGAGGCAA 60.496 47.826 12.54 0.00 45.61 4.52
2672 2988 2.038557 GGAGAAACACTTAGGTGAGGCA 59.961 50.000 12.54 0.00 45.61 4.75
2673 2989 2.615747 GGGAGAAACACTTAGGTGAGGC 60.616 54.545 12.54 0.23 45.61 4.70
2674 2990 2.353803 CGGGAGAAACACTTAGGTGAGG 60.354 54.545 12.54 0.00 45.61 3.86
2675 2991 2.299297 ACGGGAGAAACACTTAGGTGAG 59.701 50.000 12.54 0.00 45.61 3.51
2676 2992 2.322658 ACGGGAGAAACACTTAGGTGA 58.677 47.619 12.54 0.00 45.61 4.02
2678 2994 2.038164 GGAACGGGAGAAACACTTAGGT 59.962 50.000 0.00 0.00 0.00 3.08
2679 2995 2.038033 TGGAACGGGAGAAACACTTAGG 59.962 50.000 0.00 0.00 0.00 2.69
2680 2996 3.396260 TGGAACGGGAGAAACACTTAG 57.604 47.619 0.00 0.00 0.00 2.18
2681 2997 3.842007 TTGGAACGGGAGAAACACTTA 57.158 42.857 0.00 0.00 0.00 2.24
2682 2998 2.721425 TTGGAACGGGAGAAACACTT 57.279 45.000 0.00 0.00 0.00 3.16
2683 2999 2.721425 TTTGGAACGGGAGAAACACT 57.279 45.000 0.00 0.00 0.00 3.55
2684 3000 2.030274 CCATTTGGAACGGGAGAAACAC 60.030 50.000 0.00 0.00 37.39 3.32
2685 3001 2.235016 CCATTTGGAACGGGAGAAACA 58.765 47.619 0.00 0.00 37.39 2.83
2686 3002 2.235891 ACCATTTGGAACGGGAGAAAC 58.764 47.619 3.01 0.00 38.94 2.78
2687 3003 2.668144 ACCATTTGGAACGGGAGAAA 57.332 45.000 3.01 0.00 38.94 2.52
2688 3004 2.668144 AACCATTTGGAACGGGAGAA 57.332 45.000 3.01 0.00 38.94 2.87
2689 3005 2.668144 AAACCATTTGGAACGGGAGA 57.332 45.000 3.01 0.00 38.94 3.71
2690 3006 3.681593 TCTAAACCATTTGGAACGGGAG 58.318 45.455 3.01 0.00 38.94 4.30
2691 3007 3.791953 TCTAAACCATTTGGAACGGGA 57.208 42.857 3.01 0.00 38.94 5.14
2692 3008 4.552355 GTTTCTAAACCATTTGGAACGGG 58.448 43.478 3.01 0.00 39.41 5.28
2693 3009 4.023878 TCGTTTCTAAACCATTTGGAACGG 60.024 41.667 14.91 3.73 39.41 4.44
2694 3010 5.098218 TCGTTTCTAAACCATTTGGAACG 57.902 39.130 3.01 7.96 39.41 3.95
2695 3011 4.915667 GCTCGTTTCTAAACCATTTGGAAC 59.084 41.667 3.01 0.00 39.41 3.62
2696 3012 4.580995 TGCTCGTTTCTAAACCATTTGGAA 59.419 37.500 3.01 0.00 38.19 3.53
2697 3013 4.138290 TGCTCGTTTCTAAACCATTTGGA 58.862 39.130 3.01 0.00 38.94 3.53
2698 3014 4.497473 TGCTCGTTTCTAAACCATTTGG 57.503 40.909 0.00 0.00 42.17 3.28
2699 3015 8.687824 AATTATGCTCGTTTCTAAACCATTTG 57.312 30.769 0.19 0.00 35.51 2.32
2700 3016 9.783256 GTAATTATGCTCGTTTCTAAACCATTT 57.217 29.630 0.19 0.00 35.51 2.32
2701 3017 9.174166 AGTAATTATGCTCGTTTCTAAACCATT 57.826 29.630 0.19 0.00 35.51 3.16
2702 3018 8.732746 AGTAATTATGCTCGTTTCTAAACCAT 57.267 30.769 0.19 1.69 35.51 3.55
2703 3019 8.038944 AGAGTAATTATGCTCGTTTCTAAACCA 58.961 33.333 0.19 0.00 42.49 3.67
2704 3020 8.421673 AGAGTAATTATGCTCGTTTCTAAACC 57.578 34.615 0.19 0.00 42.49 3.27
2705 3021 8.260550 CGAGAGTAATTATGCTCGTTTCTAAAC 58.739 37.037 21.88 0.00 43.65 2.01
2706 3022 8.336498 CGAGAGTAATTATGCTCGTTTCTAAA 57.664 34.615 21.88 0.00 43.65 1.85
2707 3023 7.909777 CGAGAGTAATTATGCTCGTTTCTAA 57.090 36.000 21.88 0.00 43.65 2.10
2726 3042 7.455641 ACTAGGGAACATTATATCACGAGAG 57.544 40.000 0.00 0.00 0.00 3.20
2727 3043 7.834881 AACTAGGGAACATTATATCACGAGA 57.165 36.000 0.00 0.00 0.00 4.04
2728 3044 8.361139 AGAAACTAGGGAACATTATATCACGAG 58.639 37.037 0.00 0.00 0.00 4.18
2729 3045 8.246430 AGAAACTAGGGAACATTATATCACGA 57.754 34.615 0.00 0.00 0.00 4.35
2730 3046 8.888579 AAGAAACTAGGGAACATTATATCACG 57.111 34.615 0.00 0.00 0.00 4.35
2732 3048 9.998106 GCTAAGAAACTAGGGAACATTATATCA 57.002 33.333 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.