Multiple sequence alignment - TraesCS2B01G126100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G126100 chr2B 100.000 3227 0 0 1 3227 94204389 94201163 0.000000e+00 5960.0
1 TraesCS2B01G126100 chr2B 78.052 688 101 26 879 1526 93934723 93934046 3.900000e-104 388.0
2 TraesCS2B01G126100 chr2B 79.203 577 93 17 1640 2210 94224400 94223845 3.040000e-100 375.0
3 TraesCS2B01G126100 chr2B 84.010 394 50 9 138 524 525628393 525628780 1.830000e-97 366.0
4 TraesCS2B01G126100 chr2B 78.049 574 105 10 1638 2208 93112563 93113118 3.080000e-90 342.0
5 TraesCS2B01G126100 chr2B 84.865 185 26 2 1025 1208 93016651 93016834 5.500000e-43 185.0
6 TraesCS2B01G126100 chr2B 85.393 178 24 1 1040 1217 93701058 93700883 1.980000e-42 183.0
7 TraesCS2B01G126100 chr2B 79.372 223 38 7 1008 1227 94034341 94034124 2.010000e-32 150.0
8 TraesCS2B01G126100 chr2B 85.577 104 11 2 17 120 93935094 93934995 4.400000e-19 106.0
9 TraesCS2B01G126100 chr2B 94.915 59 2 1 1472 1530 93700643 93700586 1.230000e-14 91.6
10 TraesCS2B01G126100 chr2A 90.347 2020 121 36 523 2514 60196267 60194294 0.000000e+00 2582.0
11 TraesCS2B01G126100 chr2A 90.698 1935 118 30 523 2441 60610286 60608398 0.000000e+00 2519.0
12 TraesCS2B01G126100 chr2A 92.049 566 45 0 1647 2212 60176970 60176405 0.000000e+00 797.0
13 TraesCS2B01G126100 chr2A 75.080 1569 259 74 711 2181 60101332 60099798 7.650000e-171 610.0
14 TraesCS2B01G126100 chr2A 87.409 548 43 16 2687 3227 29876121 29875593 9.900000e-170 606.0
15 TraesCS2B01G126100 chr2A 84.223 412 48 13 119 520 757931598 757932002 5.050000e-103 385.0
16 TraesCS2B01G126100 chr2A 78.261 575 102 12 1638 2208 59724446 59725001 6.630000e-92 348.0
17 TraesCS2B01G126100 chr2A 93.258 178 10 2 2510 2686 60194252 60194076 8.880000e-66 261.0
18 TraesCS2B01G126100 chr2A 90.000 170 17 0 1039 1208 59587358 59587527 1.510000e-53 220.0
19 TraesCS2B01G126100 chr2A 93.793 145 8 1 2510 2653 60607970 60607826 1.950000e-52 217.0
20 TraesCS2B01G126100 chr2A 87.079 178 21 1 1040 1217 59880704 59880529 1.960000e-47 200.0
21 TraesCS2B01G126100 chr2A 90.728 151 13 1 2205 2355 60175890 60175741 1.960000e-47 200.0
22 TraesCS2B01G126100 chr2A 86.517 178 22 1 1040 1217 59943376 59943201 9.130000e-46 195.0
23 TraesCS2B01G126100 chr2A 88.690 168 7 5 2344 2499 60175725 60175558 9.130000e-46 195.0
24 TraesCS2B01G126100 chr2A 88.235 170 8 2 2357 2514 60608181 60608012 3.290000e-45 193.0
25 TraesCS2B01G126100 chr2A 77.515 338 51 23 898 1218 60711919 60711590 2.560000e-41 180.0
26 TraesCS2B01G126100 chr4B 88.214 560 41 7 2687 3227 495086288 495085735 0.000000e+00 645.0
27 TraesCS2B01G126100 chr4B 82.369 363 46 7 181 527 617326687 617326327 1.880000e-77 300.0
28 TraesCS2B01G126100 chr4B 76.681 476 79 28 2774 3227 594624546 594625011 5.380000e-58 235.0
29 TraesCS2B01G126100 chr4B 81.193 218 22 9 1311 1526 664051878 664052078 1.200000e-34 158.0
30 TraesCS2B01G126100 chr3D 84.787 493 53 13 2750 3227 97088912 97088427 2.910000e-130 475.0
31 TraesCS2B01G126100 chr3D 83.413 416 59 9 119 530 354272457 354272866 8.450000e-101 377.0
32 TraesCS2B01G126100 chr3D 83.905 379 46 8 2817 3186 563456951 563456579 6.630000e-92 348.0
33 TraesCS2B01G126100 chr3D 83.069 378 48 8 2864 3227 5146339 5145964 2.400000e-86 329.0
34 TraesCS2B01G126100 chr5A 81.111 630 86 18 1646 2265 704015618 704015012 1.050000e-129 473.0
35 TraesCS2B01G126100 chr5A 80.952 630 87 18 1646 2265 704260216 704259610 4.870000e-128 468.0
36 TraesCS2B01G126100 chr5A 80.794 630 88 18 1646 2265 703969103 703968497 2.270000e-126 462.0
37 TraesCS2B01G126100 chr6D 87.440 414 36 9 118 520 316101957 316102365 2.270000e-126 462.0
38 TraesCS2B01G126100 chr7D 84.519 478 56 12 2762 3227 135334422 135333951 1.060000e-124 457.0
39 TraesCS2B01G126100 chr7D 79.518 332 36 17 222 523 53429503 53429174 1.170000e-49 207.0
40 TraesCS2B01G126100 chr4A 84.277 477 60 11 2762 3227 577117153 577117625 4.910000e-123 451.0
41 TraesCS2B01G126100 chr4A 84.922 451 55 10 2761 3201 520827138 520826691 8.220000e-121 444.0
42 TraesCS2B01G126100 chr4A 83.265 490 51 14 2750 3227 117100000 117099530 3.850000e-114 422.0
43 TraesCS2B01G126100 chr2D 80.227 617 104 11 1631 2239 60108148 60107542 6.350000e-122 448.0
44 TraesCS2B01G126100 chr2D 83.576 481 57 16 2762 3227 12860445 12859972 6.400000e-117 431.0
45 TraesCS2B01G126100 chr2D 78.748 687 101 21 879 1526 60108908 60108228 4.980000e-113 418.0
46 TraesCS2B01G126100 chr2D 78.435 575 101 12 1638 2208 59727695 59728250 1.420000e-93 353.0
47 TraesCS2B01G126100 chr2D 77.816 577 105 14 1638 2210 60138369 60137812 5.160000e-88 335.0
48 TraesCS2B01G126100 chr2D 79.953 429 69 9 2814 3227 408460829 408461255 1.880000e-77 300.0
49 TraesCS2B01G126100 chr2D 86.517 178 22 1 1040 1217 60023201 60023026 9.130000e-46 195.0
50 TraesCS2B01G126100 chr2D 80.751 213 35 5 1008 1217 60138936 60138727 9.260000e-36 161.0
51 TraesCS2B01G126100 chr2D 78.894 199 27 6 1328 1526 59658164 59658347 1.570000e-23 121.0
52 TraesCS2B01G126100 chr2D 85.000 100 11 1 20 119 60109294 60109199 7.370000e-17 99.0
53 TraesCS2B01G126100 chr2D 98.182 55 1 0 1472 1526 60078916 60078862 2.650000e-16 97.1
54 TraesCS2B01G126100 chr3A 83.503 491 59 11 2750 3227 732518833 732519314 3.820000e-119 438.0
55 TraesCS2B01G126100 chr5D 85.442 419 48 7 118 528 404470660 404471073 1.070000e-114 424.0
56 TraesCS2B01G126100 chr5D 85.301 415 46 6 118 523 409448108 409448516 6.440000e-112 414.0
57 TraesCS2B01G126100 chr1A 79.770 608 103 13 1641 2239 299267823 299268419 1.070000e-114 424.0
58 TraesCS2B01G126100 chr1A 79.226 491 79 18 879 1355 299261388 299261869 1.440000e-83 320.0
59 TraesCS2B01G126100 chr1A 76.966 178 29 5 1358 1526 299267394 299267568 1.230000e-14 91.6
60 TraesCS2B01G126100 chr7A 85.372 417 43 9 119 524 18972098 18972507 1.790000e-112 416.0
61 TraesCS2B01G126100 chr7A 87.500 112 4 3 420 523 545951503 545951394 1.570000e-23 121.0
62 TraesCS2B01G126100 chr7B 82.979 423 52 10 2817 3227 287905040 287904626 6.580000e-97 364.0
63 TraesCS2B01G126100 chr1B 83.846 390 48 9 135 522 473562264 473561888 1.100000e-94 357.0
64 TraesCS2B01G126100 chr1B 77.595 607 110 18 1644 2239 329764642 329765233 8.570000e-91 344.0
65 TraesCS2B01G126100 chr6A 82.178 404 62 8 119 520 549433615 549434010 3.990000e-89 339.0
66 TraesCS2B01G126100 chrUn 85.663 279 32 6 2954 3227 96596635 96596360 1.470000e-73 287.0
67 TraesCS2B01G126100 chrUn 82.609 322 36 11 912 1215 109056546 109056865 1.910000e-67 267.0
68 TraesCS2B01G126100 chrUn 82.482 274 31 12 2746 3006 96597431 96597162 1.170000e-54 224.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G126100 chr2B 94201163 94204389 3226 True 5960.000000 5960 100.000000 1 3227 1 chr2B.!!$R2 3226
1 TraesCS2B01G126100 chr2B 94223845 94224400 555 True 375.000000 375 79.203000 1640 2210 1 chr2B.!!$R3 570
2 TraesCS2B01G126100 chr2B 93112563 93113118 555 False 342.000000 342 78.049000 1638 2208 1 chr2B.!!$F2 570
3 TraesCS2B01G126100 chr2B 93934046 93935094 1048 True 247.000000 388 81.814500 17 1526 2 chr2B.!!$R5 1509
4 TraesCS2B01G126100 chr2A 60194076 60196267 2191 True 1421.500000 2582 91.802500 523 2686 2 chr2A.!!$R7 2163
5 TraesCS2B01G126100 chr2A 60607826 60610286 2460 True 976.333333 2519 90.908667 523 2653 3 chr2A.!!$R8 2130
6 TraesCS2B01G126100 chr2A 60099798 60101332 1534 True 610.000000 610 75.080000 711 2181 1 chr2A.!!$R4 1470
7 TraesCS2B01G126100 chr2A 29875593 29876121 528 True 606.000000 606 87.409000 2687 3227 1 chr2A.!!$R1 540
8 TraesCS2B01G126100 chr2A 60175558 60176970 1412 True 397.333333 797 90.489000 1647 2499 3 chr2A.!!$R6 852
9 TraesCS2B01G126100 chr2A 59724446 59725001 555 False 348.000000 348 78.261000 1638 2208 1 chr2A.!!$F2 570
10 TraesCS2B01G126100 chr4B 495085735 495086288 553 True 645.000000 645 88.214000 2687 3227 1 chr4B.!!$R1 540
11 TraesCS2B01G126100 chr5A 704015012 704015618 606 True 473.000000 473 81.111000 1646 2265 1 chr5A.!!$R2 619
12 TraesCS2B01G126100 chr5A 704259610 704260216 606 True 468.000000 468 80.952000 1646 2265 1 chr5A.!!$R3 619
13 TraesCS2B01G126100 chr5A 703968497 703969103 606 True 462.000000 462 80.794000 1646 2265 1 chr5A.!!$R1 619
14 TraesCS2B01G126100 chr2D 59727695 59728250 555 False 353.000000 353 78.435000 1638 2208 1 chr2D.!!$F2 570
15 TraesCS2B01G126100 chr2D 60107542 60109294 1752 True 321.666667 448 81.325000 20 2239 3 chr2D.!!$R4 2219
16 TraesCS2B01G126100 chr2D 60137812 60138936 1124 True 248.000000 335 79.283500 1008 2210 2 chr2D.!!$R5 1202
17 TraesCS2B01G126100 chr1A 299267394 299268419 1025 False 257.800000 424 78.368000 1358 2239 2 chr1A.!!$F2 881
18 TraesCS2B01G126100 chr1B 329764642 329765233 591 False 344.000000 344 77.595000 1644 2239 1 chr1B.!!$F1 595
19 TraesCS2B01G126100 chrUn 96596360 96597431 1071 True 255.500000 287 84.072500 2746 3227 2 chrUn.!!$R1 481

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
694 704 0.102120 CTGCAACTCACCCGCAAAAA 59.898 50.0 0.0 0.0 34.75 1.94 F
877 925 0.320946 GCCGGTTAGCCAACACAGTA 60.321 55.0 1.9 0.0 36.29 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1566 1740 1.429463 CGCAAACTGACAGGTCTACC 58.571 55.0 7.51 0.0 0.0 3.18 R
2730 4024 0.389391 CCCGGTAGATGAATCGTGCT 59.611 55.0 0.00 0.0 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 5.664006 TGGGACAAAGCTAGCTATACCTTAA 59.336 40.000 19.70 7.04 31.92 1.85
92 93 9.774413 GGACAAAGCTAGCTATACCTTAAAATA 57.226 33.333 19.70 0.00 0.00 1.40
110 111 9.379791 CTTAAAATAACGTAGAATGGAGGAAGT 57.620 33.333 0.00 0.00 0.00 3.01
139 140 2.993008 GCTGTCAGCCTCCATGGA 59.007 61.111 15.27 15.27 38.35 3.41
140 141 1.153208 GCTGTCAGCCTCCATGGAG 60.153 63.158 31.69 31.69 41.63 3.86
190 191 8.541133 ACTGAAAATTTCGGTTTCAAAGAAAA 57.459 26.923 13.96 0.00 46.80 2.29
191 192 9.161629 ACTGAAAATTTCGGTTTCAAAGAAAAT 57.838 25.926 13.96 0.00 46.80 1.82
192 193 9.636965 CTGAAAATTTCGGTTTCAAAGAAAATC 57.363 29.630 6.39 0.00 42.73 2.17
193 194 9.377312 TGAAAATTTCGGTTTCAAAGAAAATCT 57.623 25.926 0.97 0.00 40.96 2.40
194 195 9.636965 GAAAATTTCGGTTTCAAAGAAAATCTG 57.363 29.630 0.00 0.00 37.41 2.90
195 196 8.940768 AAATTTCGGTTTCAAAGAAAATCTGA 57.059 26.923 0.00 0.00 37.41 3.27
196 197 8.940768 AATTTCGGTTTCAAAGAAAATCTGAA 57.059 26.923 0.00 0.00 37.41 3.02
197 198 8.940768 ATTTCGGTTTCAAAGAAAATCTGAAA 57.059 26.923 14.23 14.23 37.41 2.69
198 199 8.764524 TTTCGGTTTCAAAGAAAATCTGAAAA 57.235 26.923 11.49 0.58 39.92 2.29
199 200 7.749539 TCGGTTTCAAAGAAAATCTGAAAAC 57.250 32.000 2.45 2.45 41.35 2.43
200 201 7.316640 TCGGTTTCAAAGAAAATCTGAAAACA 58.683 30.769 11.19 0.00 43.74 2.83
201 202 7.815068 TCGGTTTCAAAGAAAATCTGAAAACAA 59.185 29.630 11.19 0.00 43.74 2.83
202 203 8.603181 CGGTTTCAAAGAAAATCTGAAAACAAT 58.397 29.630 11.19 0.00 43.74 2.71
224 225 9.515020 ACAATTGTACAAGTAAACAAGATTGTG 57.485 29.630 9.97 0.00 41.31 3.33
225 226 9.729023 CAATTGTACAAGTAAACAAGATTGTGA 57.271 29.630 14.65 0.00 41.31 3.58
226 227 9.950680 AATTGTACAAGTAAACAAGATTGTGAG 57.049 29.630 14.65 0.00 41.31 3.51
227 228 7.490962 TGTACAAGTAAACAAGATTGTGAGG 57.509 36.000 0.00 0.00 41.31 3.86
228 229 5.438761 ACAAGTAAACAAGATTGTGAGGC 57.561 39.130 0.00 0.00 41.31 4.70
229 230 4.024048 ACAAGTAAACAAGATTGTGAGGCG 60.024 41.667 0.00 0.00 41.31 5.52
230 231 3.740115 AGTAAACAAGATTGTGAGGCGT 58.260 40.909 0.00 0.00 41.31 5.68
231 232 4.890088 AGTAAACAAGATTGTGAGGCGTA 58.110 39.130 0.00 0.00 41.31 4.42
232 233 5.488341 AGTAAACAAGATTGTGAGGCGTAT 58.512 37.500 0.00 0.00 41.31 3.06
233 234 4.685169 AAACAAGATTGTGAGGCGTATG 57.315 40.909 0.00 0.00 41.31 2.39
234 235 3.334583 ACAAGATTGTGAGGCGTATGT 57.665 42.857 0.00 0.00 40.49 2.29
235 236 3.002791 ACAAGATTGTGAGGCGTATGTG 58.997 45.455 0.00 0.00 40.49 3.21
236 237 3.002791 CAAGATTGTGAGGCGTATGTGT 58.997 45.455 0.00 0.00 0.00 3.72
237 238 2.621338 AGATTGTGAGGCGTATGTGTG 58.379 47.619 0.00 0.00 0.00 3.82
238 239 2.028112 AGATTGTGAGGCGTATGTGTGT 60.028 45.455 0.00 0.00 0.00 3.72
239 240 3.194755 AGATTGTGAGGCGTATGTGTGTA 59.805 43.478 0.00 0.00 0.00 2.90
240 241 3.388345 TTGTGAGGCGTATGTGTGTAA 57.612 42.857 0.00 0.00 0.00 2.41
241 242 3.388345 TGTGAGGCGTATGTGTGTAAA 57.612 42.857 0.00 0.00 0.00 2.01
242 243 3.729966 TGTGAGGCGTATGTGTGTAAAA 58.270 40.909 0.00 0.00 0.00 1.52
243 244 4.320023 TGTGAGGCGTATGTGTGTAAAAT 58.680 39.130 0.00 0.00 0.00 1.82
244 245 4.757657 TGTGAGGCGTATGTGTGTAAAATT 59.242 37.500 0.00 0.00 0.00 1.82
245 246 5.239744 TGTGAGGCGTATGTGTGTAAAATTT 59.760 36.000 0.00 0.00 0.00 1.82
246 247 5.793457 GTGAGGCGTATGTGTGTAAAATTTC 59.207 40.000 0.00 0.00 0.00 2.17
247 248 5.470437 TGAGGCGTATGTGTGTAAAATTTCA 59.530 36.000 0.00 0.00 0.00 2.69
248 249 6.150307 TGAGGCGTATGTGTGTAAAATTTCAT 59.850 34.615 0.00 0.00 0.00 2.57
249 250 6.321717 AGGCGTATGTGTGTAAAATTTCATG 58.678 36.000 0.00 0.00 0.00 3.07
250 251 6.150307 AGGCGTATGTGTGTAAAATTTCATGA 59.850 34.615 0.00 0.00 0.00 3.07
251 252 6.972328 GGCGTATGTGTGTAAAATTTCATGAT 59.028 34.615 0.00 0.00 0.00 2.45
252 253 7.044117 GGCGTATGTGTGTAAAATTTCATGATG 60.044 37.037 0.00 0.00 0.00 3.07
253 254 7.696035 GCGTATGTGTGTAAAATTTCATGATGA 59.304 33.333 0.00 0.00 0.00 2.92
254 255 9.553418 CGTATGTGTGTAAAATTTCATGATGAA 57.447 29.630 3.29 3.29 34.03 2.57
268 269 7.739022 TTCATGATGAAATACGTTGAAATGC 57.261 32.000 5.21 0.00 32.71 3.56
269 270 5.964751 TCATGATGAAATACGTTGAAATGCG 59.035 36.000 0.00 0.00 0.00 4.73
270 271 5.538067 TGATGAAATACGTTGAAATGCGA 57.462 34.783 0.00 0.00 0.00 5.10
271 272 5.320723 TGATGAAATACGTTGAAATGCGAC 58.679 37.500 0.00 0.00 0.00 5.19
272 273 4.073169 TGAAATACGTTGAAATGCGACC 57.927 40.909 0.00 0.00 0.00 4.79
273 274 3.749088 TGAAATACGTTGAAATGCGACCT 59.251 39.130 0.00 0.00 0.00 3.85
274 275 3.740044 AATACGTTGAAATGCGACCTG 57.260 42.857 0.00 0.00 0.00 4.00
275 276 2.157834 TACGTTGAAATGCGACCTGT 57.842 45.000 0.00 0.00 0.00 4.00
276 277 2.157834 ACGTTGAAATGCGACCTGTA 57.842 45.000 0.00 0.00 0.00 2.74
277 278 2.695359 ACGTTGAAATGCGACCTGTAT 58.305 42.857 0.00 0.00 0.00 2.29
278 279 3.852286 ACGTTGAAATGCGACCTGTATA 58.148 40.909 0.00 0.00 0.00 1.47
279 280 3.863424 ACGTTGAAATGCGACCTGTATAG 59.137 43.478 0.00 0.00 0.00 1.31
280 281 4.109766 CGTTGAAATGCGACCTGTATAGA 58.890 43.478 0.00 0.00 0.00 1.98
281 282 4.565166 CGTTGAAATGCGACCTGTATAGAA 59.435 41.667 0.00 0.00 0.00 2.10
282 283 5.062934 CGTTGAAATGCGACCTGTATAGAAA 59.937 40.000 0.00 0.00 0.00 2.52
283 284 6.401688 CGTTGAAATGCGACCTGTATAGAAAA 60.402 38.462 0.00 0.00 0.00 2.29
284 285 6.662414 TGAAATGCGACCTGTATAGAAAAG 57.338 37.500 0.00 0.00 0.00 2.27
285 286 6.403049 TGAAATGCGACCTGTATAGAAAAGA 58.597 36.000 0.00 0.00 0.00 2.52
286 287 6.312918 TGAAATGCGACCTGTATAGAAAAGAC 59.687 38.462 0.00 0.00 0.00 3.01
287 288 4.794278 TGCGACCTGTATAGAAAAGACA 57.206 40.909 0.00 0.00 0.00 3.41
288 289 5.142061 TGCGACCTGTATAGAAAAGACAA 57.858 39.130 0.00 0.00 0.00 3.18
289 290 5.543714 TGCGACCTGTATAGAAAAGACAAA 58.456 37.500 0.00 0.00 0.00 2.83
290 291 6.170506 TGCGACCTGTATAGAAAAGACAAAT 58.829 36.000 0.00 0.00 0.00 2.32
291 292 6.653320 TGCGACCTGTATAGAAAAGACAAATT 59.347 34.615 0.00 0.00 0.00 1.82
292 293 7.148474 TGCGACCTGTATAGAAAAGACAAATTC 60.148 37.037 0.00 0.00 0.00 2.17
293 294 7.148474 GCGACCTGTATAGAAAAGACAAATTCA 60.148 37.037 0.00 0.00 0.00 2.57
294 295 8.883731 CGACCTGTATAGAAAAGACAAATTCAT 58.116 33.333 0.00 0.00 0.00 2.57
295 296 9.994432 GACCTGTATAGAAAAGACAAATTCATG 57.006 33.333 0.00 0.00 0.00 3.07
296 297 8.960591 ACCTGTATAGAAAAGACAAATTCATGG 58.039 33.333 0.00 0.00 0.00 3.66
297 298 8.960591 CCTGTATAGAAAAGACAAATTCATGGT 58.039 33.333 0.00 0.00 0.00 3.55
298 299 9.994432 CTGTATAGAAAAGACAAATTCATGGTC 57.006 33.333 0.00 0.00 0.00 4.02
299 300 9.513906 TGTATAGAAAAGACAAATTCATGGTCA 57.486 29.630 0.00 0.00 34.04 4.02
300 301 9.994432 GTATAGAAAAGACAAATTCATGGTCAG 57.006 33.333 0.00 0.00 34.04 3.51
301 302 6.336842 AGAAAAGACAAATTCATGGTCAGG 57.663 37.500 0.00 0.00 34.04 3.86
302 303 5.244626 AGAAAAGACAAATTCATGGTCAGGG 59.755 40.000 0.00 0.00 34.04 4.45
303 304 4.387026 AAGACAAATTCATGGTCAGGGA 57.613 40.909 0.00 0.00 34.04 4.20
304 305 3.960571 AGACAAATTCATGGTCAGGGAG 58.039 45.455 0.00 0.00 34.04 4.30
305 306 3.019564 GACAAATTCATGGTCAGGGAGG 58.980 50.000 0.00 0.00 0.00 4.30
306 307 2.649312 ACAAATTCATGGTCAGGGAGGA 59.351 45.455 0.00 0.00 0.00 3.71
307 308 3.270433 ACAAATTCATGGTCAGGGAGGAT 59.730 43.478 0.00 0.00 0.00 3.24
308 309 3.589951 AATTCATGGTCAGGGAGGATG 57.410 47.619 0.00 0.00 0.00 3.51
309 310 2.268796 TTCATGGTCAGGGAGGATGA 57.731 50.000 0.00 0.00 0.00 2.92
310 311 2.268796 TCATGGTCAGGGAGGATGAA 57.731 50.000 0.00 0.00 0.00 2.57
311 312 2.780414 TCATGGTCAGGGAGGATGAAT 58.220 47.619 0.00 0.00 0.00 2.57
312 313 3.940335 TCATGGTCAGGGAGGATGAATA 58.060 45.455 0.00 0.00 0.00 1.75
313 314 4.306391 TCATGGTCAGGGAGGATGAATAA 58.694 43.478 0.00 0.00 0.00 1.40
314 315 4.915809 TCATGGTCAGGGAGGATGAATAAT 59.084 41.667 0.00 0.00 0.00 1.28
315 316 6.090870 TCATGGTCAGGGAGGATGAATAATA 58.909 40.000 0.00 0.00 0.00 0.98
316 317 6.737131 TCATGGTCAGGGAGGATGAATAATAT 59.263 38.462 0.00 0.00 0.00 1.28
317 318 7.906192 TCATGGTCAGGGAGGATGAATAATATA 59.094 37.037 0.00 0.00 0.00 0.86
318 319 8.551440 CATGGTCAGGGAGGATGAATAATATAA 58.449 37.037 0.00 0.00 0.00 0.98
319 320 8.150827 TGGTCAGGGAGGATGAATAATATAAG 57.849 38.462 0.00 0.00 0.00 1.73
320 321 7.182749 TGGTCAGGGAGGATGAATAATATAAGG 59.817 40.741 0.00 0.00 0.00 2.69
321 322 7.051000 GTCAGGGAGGATGAATAATATAAGGC 58.949 42.308 0.00 0.00 0.00 4.35
322 323 6.051717 CAGGGAGGATGAATAATATAAGGCG 58.948 44.000 0.00 0.00 0.00 5.52
323 324 5.726793 AGGGAGGATGAATAATATAAGGCGT 59.273 40.000 0.00 0.00 0.00 5.68
324 325 6.215636 AGGGAGGATGAATAATATAAGGCGTT 59.784 38.462 0.00 0.00 0.00 4.84
325 326 7.402071 AGGGAGGATGAATAATATAAGGCGTTA 59.598 37.037 0.64 0.64 0.00 3.18
326 327 8.044908 GGGAGGATGAATAATATAAGGCGTTAA 58.955 37.037 2.52 0.00 0.00 2.01
327 328 9.444600 GGAGGATGAATAATATAAGGCGTTAAA 57.555 33.333 2.52 0.00 0.00 1.52
337 338 2.648593 GGCGTTAAAAAGCCCCAGA 58.351 52.632 8.29 0.00 46.08 3.86
338 339 1.182667 GGCGTTAAAAAGCCCCAGAT 58.817 50.000 8.29 0.00 46.08 2.90
339 340 1.548719 GGCGTTAAAAAGCCCCAGATT 59.451 47.619 8.29 0.00 46.08 2.40
340 341 2.028476 GGCGTTAAAAAGCCCCAGATTT 60.028 45.455 8.29 0.00 46.08 2.17
341 342 2.993220 GCGTTAAAAAGCCCCAGATTTG 59.007 45.455 0.00 0.00 30.45 2.32
342 343 3.554129 GCGTTAAAAAGCCCCAGATTTGT 60.554 43.478 0.00 0.00 30.45 2.83
343 344 4.234574 CGTTAAAAAGCCCCAGATTTGTC 58.765 43.478 0.00 0.00 30.45 3.18
344 345 4.022329 CGTTAAAAAGCCCCAGATTTGTCT 60.022 41.667 0.00 0.00 30.45 3.41
345 346 5.508994 CGTTAAAAAGCCCCAGATTTGTCTT 60.509 40.000 0.00 0.00 30.45 3.01
346 347 6.288294 GTTAAAAAGCCCCAGATTTGTCTTT 58.712 36.000 0.00 0.00 30.45 2.52
347 348 5.372343 AAAAAGCCCCAGATTTGTCTTTT 57.628 34.783 0.00 0.00 35.89 2.27
348 349 5.372343 AAAAGCCCCAGATTTGTCTTTTT 57.628 34.783 0.00 0.00 31.97 1.94
365 366 2.529780 TTTTGCACAGCCCTCATTTG 57.470 45.000 0.00 0.00 0.00 2.32
366 367 1.702182 TTTGCACAGCCCTCATTTGA 58.298 45.000 0.00 0.00 0.00 2.69
367 368 1.702182 TTGCACAGCCCTCATTTGAA 58.298 45.000 0.00 0.00 0.00 2.69
368 369 0.961019 TGCACAGCCCTCATTTGAAC 59.039 50.000 0.00 0.00 0.00 3.18
369 370 0.109597 GCACAGCCCTCATTTGAACG 60.110 55.000 0.00 0.00 0.00 3.95
370 371 1.238439 CACAGCCCTCATTTGAACGT 58.762 50.000 0.00 0.00 0.00 3.99
371 372 2.422597 CACAGCCCTCATTTGAACGTA 58.577 47.619 0.00 0.00 0.00 3.57
372 373 3.009723 CACAGCCCTCATTTGAACGTAT 58.990 45.455 0.00 0.00 0.00 3.06
373 374 3.440173 CACAGCCCTCATTTGAACGTATT 59.560 43.478 0.00 0.00 0.00 1.89
374 375 4.079253 ACAGCCCTCATTTGAACGTATTT 58.921 39.130 0.00 0.00 0.00 1.40
375 376 4.522789 ACAGCCCTCATTTGAACGTATTTT 59.477 37.500 0.00 0.00 0.00 1.82
376 377 4.858692 CAGCCCTCATTTGAACGTATTTTG 59.141 41.667 0.00 0.00 0.00 2.44
377 378 4.522789 AGCCCTCATTTGAACGTATTTTGT 59.477 37.500 0.00 0.00 0.00 2.83
378 379 4.857037 GCCCTCATTTGAACGTATTTTGTC 59.143 41.667 0.00 0.00 0.00 3.18
379 380 5.399013 CCCTCATTTGAACGTATTTTGTCC 58.601 41.667 0.00 0.00 0.00 4.02
380 381 5.183140 CCCTCATTTGAACGTATTTTGTCCT 59.817 40.000 0.00 0.00 0.00 3.85
381 382 6.086222 CCTCATTTGAACGTATTTTGTCCTG 58.914 40.000 0.00 0.00 0.00 3.86
382 383 6.072728 CCTCATTTGAACGTATTTTGTCCTGA 60.073 38.462 0.00 0.00 0.00 3.86
383 384 7.265647 TCATTTGAACGTATTTTGTCCTGAA 57.734 32.000 0.00 0.00 0.00 3.02
384 385 7.708051 TCATTTGAACGTATTTTGTCCTGAAA 58.292 30.769 0.00 0.00 0.00 2.69
385 386 8.191446 TCATTTGAACGTATTTTGTCCTGAAAA 58.809 29.630 0.00 0.00 0.00 2.29
386 387 8.977505 CATTTGAACGTATTTTGTCCTGAAAAT 58.022 29.630 0.00 0.00 38.69 1.82
387 388 8.934507 TTTGAACGTATTTTGTCCTGAAAATT 57.065 26.923 0.00 0.00 36.94 1.82
388 389 8.934507 TTGAACGTATTTTGTCCTGAAAATTT 57.065 26.923 0.00 0.00 36.94 1.82
390 391 9.453325 TGAACGTATTTTGTCCTGAAAATTTAC 57.547 29.630 0.00 0.00 36.94 2.01
391 392 9.453325 GAACGTATTTTGTCCTGAAAATTTACA 57.547 29.630 0.00 0.00 36.94 2.41
392 393 8.791355 ACGTATTTTGTCCTGAAAATTTACAC 57.209 30.769 0.00 0.00 36.94 2.90
393 394 8.407064 ACGTATTTTGTCCTGAAAATTTACACA 58.593 29.630 0.00 0.00 36.94 3.72
394 395 8.687301 CGTATTTTGTCCTGAAAATTTACACAC 58.313 33.333 0.00 0.00 36.94 3.82
395 396 9.744468 GTATTTTGTCCTGAAAATTTACACACT 57.256 29.630 0.00 0.00 36.94 3.55
397 398 8.472683 TTTTGTCCTGAAAATTTACACACTTG 57.527 30.769 0.00 0.00 0.00 3.16
398 399 5.587289 TGTCCTGAAAATTTACACACTTGC 58.413 37.500 0.00 0.00 0.00 4.01
399 400 4.675114 GTCCTGAAAATTTACACACTTGCG 59.325 41.667 0.00 0.00 0.00 4.85
400 401 3.425193 CCTGAAAATTTACACACTTGCGC 59.575 43.478 0.00 0.00 0.00 6.09
401 402 4.033990 TGAAAATTTACACACTTGCGCA 57.966 36.364 5.66 5.66 0.00 6.09
402 403 3.794028 TGAAAATTTACACACTTGCGCAC 59.206 39.130 11.12 0.00 0.00 5.34
403 404 3.708563 AAATTTACACACTTGCGCACT 57.291 38.095 11.12 0.00 0.00 4.40
404 405 4.822036 AAATTTACACACTTGCGCACTA 57.178 36.364 11.12 0.00 0.00 2.74
405 406 5.371115 AAATTTACACACTTGCGCACTAT 57.629 34.783 11.12 0.00 0.00 2.12
406 407 3.804518 TTTACACACTTGCGCACTATG 57.195 42.857 11.12 11.69 0.00 2.23
407 408 1.075542 TACACACTTGCGCACTATGC 58.924 50.000 11.12 0.00 40.69 3.14
408 409 1.135315 CACACTTGCGCACTATGCC 59.865 57.895 11.12 0.00 41.12 4.40
409 410 1.003355 ACACTTGCGCACTATGCCT 60.003 52.632 11.12 0.00 41.12 4.75
410 411 1.021390 ACACTTGCGCACTATGCCTC 61.021 55.000 11.12 0.00 41.12 4.70
411 412 1.450312 ACTTGCGCACTATGCCTCC 60.450 57.895 11.12 0.00 41.12 4.30
412 413 1.450134 CTTGCGCACTATGCCTCCA 60.450 57.895 11.12 0.00 41.12 3.86
413 414 0.816825 CTTGCGCACTATGCCTCCAT 60.817 55.000 11.12 0.00 41.12 3.41
414 415 0.815213 TTGCGCACTATGCCTCCATC 60.815 55.000 11.12 0.00 41.12 3.51
415 416 1.070445 GCGCACTATGCCTCCATCT 59.930 57.895 0.30 0.00 41.12 2.90
416 417 0.318441 GCGCACTATGCCTCCATCTA 59.682 55.000 0.30 0.00 41.12 1.98
417 418 1.066573 GCGCACTATGCCTCCATCTAT 60.067 52.381 0.30 0.00 41.12 1.98
418 419 2.886081 CGCACTATGCCTCCATCTATC 58.114 52.381 0.00 0.00 41.12 2.08
419 420 2.495270 CGCACTATGCCTCCATCTATCT 59.505 50.000 0.00 0.00 41.12 1.98
420 421 3.428725 CGCACTATGCCTCCATCTATCTC 60.429 52.174 0.00 0.00 41.12 2.75
421 422 3.768757 GCACTATGCCTCCATCTATCTCT 59.231 47.826 0.00 0.00 37.42 3.10
422 423 4.381825 GCACTATGCCTCCATCTATCTCTG 60.382 50.000 0.00 0.00 37.42 3.35
423 424 4.771577 CACTATGCCTCCATCTATCTCTGT 59.228 45.833 0.00 0.00 32.85 3.41
424 425 5.948758 CACTATGCCTCCATCTATCTCTGTA 59.051 44.000 0.00 0.00 32.85 2.74
425 426 6.606796 CACTATGCCTCCATCTATCTCTGTAT 59.393 42.308 0.00 0.00 32.85 2.29
426 427 7.123997 CACTATGCCTCCATCTATCTCTGTATT 59.876 40.741 0.00 0.00 32.85 1.89
427 428 6.949117 ATGCCTCCATCTATCTCTGTATTT 57.051 37.500 0.00 0.00 0.00 1.40
428 429 6.753913 TGCCTCCATCTATCTCTGTATTTT 57.246 37.500 0.00 0.00 0.00 1.82
429 430 7.141758 TGCCTCCATCTATCTCTGTATTTTT 57.858 36.000 0.00 0.00 0.00 1.94
482 483 9.632807 ATGAATTTTCATGAATTTTGCATTTGG 57.367 25.926 9.40 0.00 45.63 3.28
483 484 8.847196 TGAATTTTCATGAATTTTGCATTTGGA 58.153 25.926 9.40 0.00 31.01 3.53
484 485 9.337091 GAATTTTCATGAATTTTGCATTTGGAG 57.663 29.630 9.40 0.00 29.75 3.86
485 486 6.804770 TTTCATGAATTTTGCATTTGGAGG 57.195 33.333 9.40 0.00 0.00 4.30
486 487 4.255301 TCATGAATTTTGCATTTGGAGGC 58.745 39.130 0.00 0.00 0.00 4.70
487 488 3.056588 TGAATTTTGCATTTGGAGGCC 57.943 42.857 0.00 0.00 0.00 5.19
488 489 2.638855 TGAATTTTGCATTTGGAGGCCT 59.361 40.909 3.86 3.86 0.00 5.19
489 490 3.264947 GAATTTTGCATTTGGAGGCCTC 58.735 45.455 25.59 25.59 0.00 4.70
506 507 3.642977 TCCATAAGGAGCTCAGCCT 57.357 52.632 17.19 0.38 39.61 4.58
507 508 1.418334 TCCATAAGGAGCTCAGCCTC 58.582 55.000 17.19 0.00 39.61 4.70
514 515 2.178856 GAGCTCAGCCTCCAAAAGC 58.821 57.895 9.40 0.00 0.00 3.51
515 516 0.607489 GAGCTCAGCCTCCAAAAGCA 60.607 55.000 9.40 0.00 35.42 3.91
516 517 0.178981 AGCTCAGCCTCCAAAAGCAA 60.179 50.000 0.00 0.00 35.42 3.91
517 518 0.893447 GCTCAGCCTCCAAAAGCAAT 59.107 50.000 0.00 0.00 33.21 3.56
518 519 1.274447 GCTCAGCCTCCAAAAGCAATT 59.726 47.619 0.00 0.00 33.21 2.32
519 520 2.289257 GCTCAGCCTCCAAAAGCAATTT 60.289 45.455 0.00 0.00 33.21 1.82
520 521 3.582780 CTCAGCCTCCAAAAGCAATTTC 58.417 45.455 0.00 0.00 0.00 2.17
521 522 2.299867 TCAGCCTCCAAAAGCAATTTCC 59.700 45.455 0.00 0.00 0.00 3.13
536 537 2.330231 TTTCCGCTTTTGAGCATTCG 57.670 45.000 0.00 0.00 34.41 3.34
585 586 5.940192 ATTTCGTTGACTTCAATGCACTA 57.060 34.783 6.34 0.00 41.39 2.74
587 597 3.990092 TCGTTGACTTCAATGCACTACT 58.010 40.909 6.34 0.00 41.39 2.57
613 623 3.658709 TGATACATCCGCGCATGATTTA 58.341 40.909 18.64 9.45 0.00 1.40
624 634 3.613737 GCGCATGATTTAGCAAAACATGT 59.386 39.130 21.22 0.00 36.95 3.21
625 635 4.797868 GCGCATGATTTAGCAAAACATGTA 59.202 37.500 21.22 0.00 36.95 2.29
626 636 5.275881 GCGCATGATTTAGCAAAACATGTAC 60.276 40.000 21.22 14.81 36.95 2.90
627 637 5.799435 CGCATGATTTAGCAAAACATGTACA 59.201 36.000 21.22 0.00 36.95 2.90
628 638 6.473131 CGCATGATTTAGCAAAACATGTACAT 59.527 34.615 21.22 1.41 36.95 2.29
629 639 7.513969 CGCATGATTTAGCAAAACATGTACATG 60.514 37.037 29.97 29.97 44.15 3.21
639 649 3.634397 ACATGTACATGGCTACTTGCT 57.366 42.857 33.32 11.60 42.91 3.91
640 650 4.753516 ACATGTACATGGCTACTTGCTA 57.246 40.909 33.32 0.00 42.91 3.49
641 651 5.097742 ACATGTACATGGCTACTTGCTAA 57.902 39.130 33.32 0.00 42.91 3.09
642 652 5.684704 ACATGTACATGGCTACTTGCTAAT 58.315 37.500 33.32 10.26 42.91 1.73
651 661 8.386264 ACATGGCTACTTGCTAATTAATATCCT 58.614 33.333 0.00 0.00 42.39 3.24
682 692 3.306502 CCCTGCAAAATGATTCTGCAACT 60.307 43.478 7.64 0.00 44.94 3.16
683 693 3.924686 CCTGCAAAATGATTCTGCAACTC 59.075 43.478 7.64 0.00 44.94 3.01
684 694 4.552355 CTGCAAAATGATTCTGCAACTCA 58.448 39.130 7.64 0.00 44.94 3.41
685 695 4.300803 TGCAAAATGATTCTGCAACTCAC 58.699 39.130 3.29 0.00 42.84 3.51
686 696 3.676646 GCAAAATGATTCTGCAACTCACC 59.323 43.478 0.00 0.00 36.09 4.02
687 697 4.240096 CAAAATGATTCTGCAACTCACCC 58.760 43.478 0.00 0.00 0.00 4.61
688 698 1.742761 ATGATTCTGCAACTCACCCG 58.257 50.000 0.00 0.00 0.00 5.28
689 699 0.955428 TGATTCTGCAACTCACCCGC 60.955 55.000 0.00 0.00 0.00 6.13
692 702 0.749818 TTCTGCAACTCACCCGCAAA 60.750 50.000 0.00 0.00 34.75 3.68
693 703 0.749818 TCTGCAACTCACCCGCAAAA 60.750 50.000 0.00 0.00 34.75 2.44
694 704 0.102120 CTGCAACTCACCCGCAAAAA 59.898 50.000 0.00 0.00 34.75 1.94
760 770 4.035278 TGATACATGCGTTCACGATGTA 57.965 40.909 18.40 18.40 41.53 2.29
800 813 2.094258 CGAGTTGCAGCAATACGACAAT 59.906 45.455 23.33 0.00 31.10 2.71
809 822 5.327091 CAGCAATACGACAATCCAGAAAAG 58.673 41.667 0.00 0.00 0.00 2.27
810 823 5.122239 CAGCAATACGACAATCCAGAAAAGA 59.878 40.000 0.00 0.00 0.00 2.52
811 824 5.352569 AGCAATACGACAATCCAGAAAAGAG 59.647 40.000 0.00 0.00 0.00 2.85
812 825 5.447818 GCAATACGACAATCCAGAAAAGAGG 60.448 44.000 0.00 0.00 0.00 3.69
863 898 1.091537 CCAACACAATATTCGCCGGT 58.908 50.000 1.90 0.00 0.00 5.28
864 899 1.470890 CCAACACAATATTCGCCGGTT 59.529 47.619 1.90 0.00 0.00 4.44
866 901 3.242608 CCAACACAATATTCGCCGGTTAG 60.243 47.826 1.90 0.00 0.00 2.34
868 903 1.263217 CACAATATTCGCCGGTTAGCC 59.737 52.381 1.90 0.00 0.00 3.93
876 924 1.599797 GCCGGTTAGCCAACACAGT 60.600 57.895 1.90 0.00 36.29 3.55
877 925 0.320946 GCCGGTTAGCCAACACAGTA 60.321 55.000 1.90 0.00 36.29 2.74
878 926 1.435577 CCGGTTAGCCAACACAGTAC 58.564 55.000 0.00 0.00 36.29 2.73
880 928 1.817357 GGTTAGCCAACACAGTACCC 58.183 55.000 0.00 0.00 36.29 3.69
959 1017 1.516161 CATGCGACATCCGAATCCAT 58.484 50.000 0.00 0.00 41.76 3.41
961 1019 0.463620 TGCGACATCCGAATCCATCA 59.536 50.000 0.00 0.00 41.76 3.07
967 1025 4.494690 CGACATCCGAATCCATCACAAAAG 60.495 45.833 0.00 0.00 41.76 2.27
982 1040 7.255035 CCATCACAAAAGTTCATCTGCTATAGG 60.255 40.741 1.04 0.00 0.00 2.57
1013 1081 2.079158 AGTTGTCATGGCGTCTTCATG 58.921 47.619 0.00 0.00 42.28 3.07
1118 1186 0.881118 GCGCTTTCCACCATCAAGAA 59.119 50.000 0.00 0.00 0.00 2.52
1128 1196 0.744414 CCATCAAGAACGCCGTGGAT 60.744 55.000 0.00 0.00 0.00 3.41
1170 1238 4.087892 ATGGGCGCGTCTCTGCTT 62.088 61.111 11.94 0.00 0.00 3.91
1171 1239 2.721167 ATGGGCGCGTCTCTGCTTA 61.721 57.895 11.94 0.00 0.00 3.09
1227 1299 8.082242 GCAAGTTTTTCACATACCACTTCTATT 58.918 33.333 0.00 0.00 0.00 1.73
1229 1301 8.691661 AGTTTTTCACATACCACTTCTATTGT 57.308 30.769 0.00 0.00 0.00 2.71
1237 1309 2.906389 ACCACTTCTATTGTCTGGCTGA 59.094 45.455 0.00 0.00 0.00 4.26
1270 1359 5.651530 TGTTTCGGTTTTGTTCATTTGCTA 58.348 33.333 0.00 0.00 0.00 3.49
1275 1373 6.276847 TCGGTTTTGTTCATTTGCTAAACAT 58.723 32.000 0.00 0.00 34.00 2.71
1276 1374 6.758886 TCGGTTTTGTTCATTTGCTAAACATT 59.241 30.769 0.00 0.00 34.00 2.71
1277 1375 7.921214 TCGGTTTTGTTCATTTGCTAAACATTA 59.079 29.630 0.00 0.00 34.00 1.90
1278 1376 8.213812 CGGTTTTGTTCATTTGCTAAACATTAG 58.786 33.333 0.00 0.00 34.00 1.73
1279 1377 9.040939 GGTTTTGTTCATTTGCTAAACATTAGT 57.959 29.630 0.00 0.00 34.00 2.24
1280 1378 9.848172 GTTTTGTTCATTTGCTAAACATTAGTG 57.152 29.630 0.00 0.00 33.28 2.74
1315 1415 6.611381 ACCGTGCATATATAAATGTTGCATC 58.389 36.000 10.33 5.14 33.32 3.91
1469 1600 1.817941 AACAACAAGCGCACCGTCT 60.818 52.632 11.47 0.00 0.00 4.18
1532 1681 2.431260 TCGTCGCGGTACAAAGCC 60.431 61.111 6.13 0.00 0.00 4.35
1591 1765 0.110056 CCTGTCAGTTTGCGCATGTC 60.110 55.000 12.75 5.24 0.00 3.06
2244 3150 1.250840 AAGAATCGCCCTTTGCACCC 61.251 55.000 0.00 0.00 41.33 4.61
2253 3159 2.418609 GCCCTTTGCACCCAAATGATAC 60.419 50.000 0.00 0.00 39.98 2.24
2275 3181 4.036380 ACCGTGAACCATGTCTTTTTCTTC 59.964 41.667 0.00 0.00 0.00 2.87
2297 3204 4.219725 TCTTTTTAATTAGCACAGTGGCCC 59.780 41.667 0.00 0.00 0.00 5.80
2302 3209 1.879575 TTAGCACAGTGGCCCTCTAT 58.120 50.000 0.00 0.00 0.00 1.98
2325 3232 6.993786 TTGCGAGGACATCAATATTTTACA 57.006 33.333 0.00 0.00 0.00 2.41
2334 3241 9.573133 GGACATCAATATTTTACACTTCCAAAG 57.427 33.333 0.00 0.00 0.00 2.77
2526 3819 6.984474 GGCATGTAGTTGTATGCTCTTTAGTA 59.016 38.462 8.82 0.00 46.69 1.82
2561 3854 8.539674 CAACAACTTTATGCAGTTAACCTTTTC 58.460 33.333 0.88 0.00 35.10 2.29
2562 3855 6.915843 ACAACTTTATGCAGTTAACCTTTTCG 59.084 34.615 0.88 0.00 35.10 3.46
2563 3856 6.628919 ACTTTATGCAGTTAACCTTTTCGT 57.371 33.333 0.88 0.00 0.00 3.85
2564 3857 6.665465 ACTTTATGCAGTTAACCTTTTCGTC 58.335 36.000 0.88 0.00 0.00 4.20
2565 3858 6.261381 ACTTTATGCAGTTAACCTTTTCGTCA 59.739 34.615 0.88 0.00 0.00 4.35
2586 3880 4.019771 TCAATGGCTATATGGCGTAATCCA 60.020 41.667 4.85 7.21 45.14 3.41
2601 3895 7.504238 TGGCGTAATCCAATTACATTCCTATTT 59.496 33.333 9.73 0.00 44.08 1.40
2638 3932 8.968242 CCTAGTTCTTGCTTGTATTTTGTTTTC 58.032 33.333 0.00 0.00 0.00 2.29
2716 4010 4.186136 TTCCAGTCGACCGGAAGT 57.814 55.556 25.93 0.00 36.36 3.01
2725 4019 0.437295 CGACCGGAAGTTAAGCAACG 59.563 55.000 9.46 0.00 39.78 4.10
2730 4024 2.343101 CGGAAGTTAAGCAACGGATCA 58.657 47.619 0.00 0.00 39.78 2.92
2735 4029 1.075542 TTAAGCAACGGATCAGCACG 58.924 50.000 0.00 0.00 0.00 5.34
2754 4059 3.025978 ACGATTCATCTACCGGGTGTTA 58.974 45.455 10.66 0.00 0.00 2.41
2758 4063 5.176958 CGATTCATCTACCGGGTGTTAATTC 59.823 44.000 10.66 0.00 0.00 2.17
2852 4163 4.942761 AAAACTGCTGATGTCACCAAAT 57.057 36.364 0.00 0.00 0.00 2.32
2856 4167 6.594788 AACTGCTGATGTCACCAAATATTT 57.405 33.333 0.00 0.00 0.00 1.40
2859 4170 6.127814 ACTGCTGATGTCACCAAATATTTCAG 60.128 38.462 0.00 1.73 34.04 3.02
2943 4254 5.375417 TCACATGAAAGATTTGTTGCGAT 57.625 34.783 0.00 0.00 0.00 4.58
2958 4276 1.956477 TGCGATGAGATCTTCGATCCA 59.044 47.619 18.67 6.32 43.48 3.41
3054 4952 7.056635 CCTCTTTGGTATGTCATTTACCATCT 58.943 38.462 8.06 0.00 46.36 2.90
3142 5041 4.681781 GCACTAGAGCATAGGAAAGCAGAA 60.682 45.833 7.33 0.00 0.00 3.02
3144 5043 2.916640 AGAGCATAGGAAAGCAGAAGC 58.083 47.619 0.00 0.00 42.56 3.86
3147 5046 1.403323 GCATAGGAAAGCAGAAGCCAC 59.597 52.381 0.00 0.00 43.56 5.01
3201 5100 9.503427 AAAATATTTTATAGCTCAAACTGTCGC 57.497 29.630 11.76 0.00 0.00 5.19
3208 5113 2.682856 AGCTCAAACTGTCGCTGAAAAA 59.317 40.909 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 7.897864 AGTCAACTTCTCTATATTAATCCCGG 58.102 38.462 0.00 0.00 0.00 5.73
88 89 9.901172 AAATACTTCCTCCATTCTACGTTATTT 57.099 29.630 0.00 0.00 0.00 1.40
122 123 1.153208 CTCCATGGAGGCTGACAGC 60.153 63.158 31.14 19.55 41.46 4.40
131 132 1.767759 AAAAATCGGCCTCCATGGAG 58.232 50.000 31.69 31.69 41.63 3.86
132 133 3.998560 AAAAATCGGCCTCCATGGA 57.001 47.368 15.27 15.27 38.35 3.41
157 158 8.940952 TGAAACCGAAATTTTCAGTTTTTCAAT 58.059 25.926 19.33 2.49 39.62 2.57
158 159 8.311650 TGAAACCGAAATTTTCAGTTTTTCAA 57.688 26.923 19.33 7.98 39.62 2.69
159 160 7.891183 TGAAACCGAAATTTTCAGTTTTTCA 57.109 28.000 19.33 16.57 39.62 2.69
160 161 9.261318 CTTTGAAACCGAAATTTTCAGTTTTTC 57.739 29.630 19.33 14.90 42.44 2.29
161 162 8.994170 TCTTTGAAACCGAAATTTTCAGTTTTT 58.006 25.926 19.33 8.61 42.44 1.94
162 163 8.541133 TCTTTGAAACCGAAATTTTCAGTTTT 57.459 26.923 19.33 10.52 42.44 2.43
163 164 8.541133 TTCTTTGAAACCGAAATTTTCAGTTT 57.459 26.923 18.71 18.71 42.44 2.66
165 166 8.541133 TTTTCTTTGAAACCGAAATTTTCAGT 57.459 26.923 9.66 1.24 42.44 3.41
166 167 9.636965 GATTTTCTTTGAAACCGAAATTTTCAG 57.363 29.630 9.66 0.60 42.44 3.02
167 168 9.377312 AGATTTTCTTTGAAACCGAAATTTTCA 57.623 25.926 9.66 0.00 40.42 2.69
168 169 9.636965 CAGATTTTCTTTGAAACCGAAATTTTC 57.363 29.630 0.00 0.00 34.16 2.29
169 170 9.377312 TCAGATTTTCTTTGAAACCGAAATTTT 57.623 25.926 0.00 0.00 0.00 1.82
170 171 8.940768 TCAGATTTTCTTTGAAACCGAAATTT 57.059 26.923 0.00 0.00 0.00 1.82
173 174 8.652463 GTTTTCAGATTTTCTTTGAAACCGAAA 58.348 29.630 0.00 0.00 39.68 3.46
174 175 7.815068 TGTTTTCAGATTTTCTTTGAAACCGAA 59.185 29.630 0.00 0.00 39.68 4.30
175 176 7.316640 TGTTTTCAGATTTTCTTTGAAACCGA 58.683 30.769 0.00 0.00 39.68 4.69
198 199 9.515020 CACAATCTTGTTTACTTGTACAATTGT 57.485 29.630 16.68 16.68 39.91 2.71
199 200 9.729023 TCACAATCTTGTTTACTTGTACAATTG 57.271 29.630 9.13 3.24 39.91 2.32
200 201 9.950680 CTCACAATCTTGTTTACTTGTACAATT 57.049 29.630 9.13 6.20 39.91 2.32
201 202 8.567948 CCTCACAATCTTGTTTACTTGTACAAT 58.432 33.333 9.13 2.49 39.91 2.71
202 203 7.468084 GCCTCACAATCTTGTTTACTTGTACAA 60.468 37.037 8.28 8.28 39.91 2.41
203 204 6.017440 GCCTCACAATCTTGTTTACTTGTACA 60.017 38.462 0.00 0.00 39.91 2.90
204 205 6.371389 GCCTCACAATCTTGTTTACTTGTAC 58.629 40.000 0.00 0.00 39.91 2.90
205 206 5.178623 CGCCTCACAATCTTGTTTACTTGTA 59.821 40.000 0.00 0.00 39.91 2.41
206 207 4.024048 CGCCTCACAATCTTGTTTACTTGT 60.024 41.667 0.00 0.00 39.91 3.16
207 208 4.024048 ACGCCTCACAATCTTGTTTACTTG 60.024 41.667 0.00 0.00 39.91 3.16
208 209 4.134563 ACGCCTCACAATCTTGTTTACTT 58.865 39.130 0.00 0.00 39.91 2.24
209 210 3.740115 ACGCCTCACAATCTTGTTTACT 58.260 40.909 0.00 0.00 39.91 2.24
210 211 5.121768 ACATACGCCTCACAATCTTGTTTAC 59.878 40.000 0.00 0.00 39.91 2.01
211 212 5.121611 CACATACGCCTCACAATCTTGTTTA 59.878 40.000 0.00 0.00 39.91 2.01
212 213 4.072131 ACATACGCCTCACAATCTTGTTT 58.928 39.130 0.00 0.00 39.91 2.83
213 214 3.436704 CACATACGCCTCACAATCTTGTT 59.563 43.478 0.00 0.00 39.91 2.83
214 215 3.002791 CACATACGCCTCACAATCTTGT 58.997 45.455 0.00 0.00 43.36 3.16
215 216 3.002791 ACACATACGCCTCACAATCTTG 58.997 45.455 0.00 0.00 0.00 3.02
216 217 3.002791 CACACATACGCCTCACAATCTT 58.997 45.455 0.00 0.00 0.00 2.40
217 218 2.028112 ACACACATACGCCTCACAATCT 60.028 45.455 0.00 0.00 0.00 2.40
218 219 2.346803 ACACACATACGCCTCACAATC 58.653 47.619 0.00 0.00 0.00 2.67
219 220 2.472695 ACACACATACGCCTCACAAT 57.527 45.000 0.00 0.00 0.00 2.71
220 221 3.388345 TTACACACATACGCCTCACAA 57.612 42.857 0.00 0.00 0.00 3.33
221 222 3.388345 TTTACACACATACGCCTCACA 57.612 42.857 0.00 0.00 0.00 3.58
222 223 4.939509 ATTTTACACACATACGCCTCAC 57.060 40.909 0.00 0.00 0.00 3.51
223 224 5.470437 TGAAATTTTACACACATACGCCTCA 59.530 36.000 0.00 0.00 0.00 3.86
224 225 5.933790 TGAAATTTTACACACATACGCCTC 58.066 37.500 0.00 0.00 0.00 4.70
225 226 5.950758 TGAAATTTTACACACATACGCCT 57.049 34.783 0.00 0.00 0.00 5.52
226 227 6.318628 TCATGAAATTTTACACACATACGCC 58.681 36.000 0.00 0.00 0.00 5.68
227 228 7.696035 TCATCATGAAATTTTACACACATACGC 59.304 33.333 0.00 0.00 0.00 4.42
228 229 9.553418 TTCATCATGAAATTTTACACACATACG 57.447 29.630 0.00 0.00 32.71 3.06
244 245 6.468637 CGCATTTCAACGTATTTCATCATGAA 59.531 34.615 0.00 0.00 34.03 2.57
245 246 5.964751 CGCATTTCAACGTATTTCATCATGA 59.035 36.000 0.00 0.00 0.00 3.07
246 247 5.964751 TCGCATTTCAACGTATTTCATCATG 59.035 36.000 0.00 0.00 0.00 3.07
247 248 5.965334 GTCGCATTTCAACGTATTTCATCAT 59.035 36.000 0.00 0.00 0.00 2.45
248 249 5.320723 GTCGCATTTCAACGTATTTCATCA 58.679 37.500 0.00 0.00 0.00 3.07
249 250 4.728608 GGTCGCATTTCAACGTATTTCATC 59.271 41.667 0.00 0.00 0.00 2.92
250 251 4.394920 AGGTCGCATTTCAACGTATTTCAT 59.605 37.500 0.00 0.00 0.00 2.57
251 252 3.749088 AGGTCGCATTTCAACGTATTTCA 59.251 39.130 0.00 0.00 0.00 2.69
252 253 4.088648 CAGGTCGCATTTCAACGTATTTC 58.911 43.478 0.00 0.00 0.00 2.17
253 254 3.500680 ACAGGTCGCATTTCAACGTATTT 59.499 39.130 0.00 0.00 0.00 1.40
254 255 3.071479 ACAGGTCGCATTTCAACGTATT 58.929 40.909 0.00 0.00 0.00 1.89
255 256 2.695359 ACAGGTCGCATTTCAACGTAT 58.305 42.857 0.00 0.00 0.00 3.06
256 257 2.157834 ACAGGTCGCATTTCAACGTA 57.842 45.000 0.00 0.00 0.00 3.57
257 258 2.157834 TACAGGTCGCATTTCAACGT 57.842 45.000 0.00 0.00 0.00 3.99
258 259 4.109766 TCTATACAGGTCGCATTTCAACG 58.890 43.478 0.00 0.00 0.00 4.10
259 260 6.417191 TTTCTATACAGGTCGCATTTCAAC 57.583 37.500 0.00 0.00 0.00 3.18
260 261 6.876789 TCTTTTCTATACAGGTCGCATTTCAA 59.123 34.615 0.00 0.00 0.00 2.69
261 262 6.312918 GTCTTTTCTATACAGGTCGCATTTCA 59.687 38.462 0.00 0.00 0.00 2.69
262 263 6.312918 TGTCTTTTCTATACAGGTCGCATTTC 59.687 38.462 0.00 0.00 0.00 2.17
263 264 6.170506 TGTCTTTTCTATACAGGTCGCATTT 58.829 36.000 0.00 0.00 0.00 2.32
264 265 5.730550 TGTCTTTTCTATACAGGTCGCATT 58.269 37.500 0.00 0.00 0.00 3.56
265 266 5.339008 TGTCTTTTCTATACAGGTCGCAT 57.661 39.130 0.00 0.00 0.00 4.73
266 267 4.794278 TGTCTTTTCTATACAGGTCGCA 57.206 40.909 0.00 0.00 0.00 5.10
267 268 6.663944 ATTTGTCTTTTCTATACAGGTCGC 57.336 37.500 0.00 0.00 0.00 5.19
268 269 8.251750 TGAATTTGTCTTTTCTATACAGGTCG 57.748 34.615 0.00 0.00 0.00 4.79
269 270 9.994432 CATGAATTTGTCTTTTCTATACAGGTC 57.006 33.333 0.00 0.00 0.00 3.85
270 271 8.960591 CCATGAATTTGTCTTTTCTATACAGGT 58.039 33.333 0.00 0.00 0.00 4.00
271 272 8.960591 ACCATGAATTTGTCTTTTCTATACAGG 58.039 33.333 0.00 0.00 0.00 4.00
272 273 9.994432 GACCATGAATTTGTCTTTTCTATACAG 57.006 33.333 0.00 0.00 0.00 2.74
273 274 9.513906 TGACCATGAATTTGTCTTTTCTATACA 57.486 29.630 0.00 0.00 0.00 2.29
274 275 9.994432 CTGACCATGAATTTGTCTTTTCTATAC 57.006 33.333 0.00 0.00 0.00 1.47
275 276 9.177608 CCTGACCATGAATTTGTCTTTTCTATA 57.822 33.333 0.00 0.00 0.00 1.31
276 277 7.123247 CCCTGACCATGAATTTGTCTTTTCTAT 59.877 37.037 0.00 0.00 0.00 1.98
277 278 6.434028 CCCTGACCATGAATTTGTCTTTTCTA 59.566 38.462 0.00 0.00 0.00 2.10
278 279 5.244626 CCCTGACCATGAATTTGTCTTTTCT 59.755 40.000 0.00 0.00 0.00 2.52
279 280 5.243730 TCCCTGACCATGAATTTGTCTTTTC 59.756 40.000 0.00 0.00 0.00 2.29
280 281 5.147032 TCCCTGACCATGAATTTGTCTTTT 58.853 37.500 0.00 0.00 0.00 2.27
281 282 4.739793 TCCCTGACCATGAATTTGTCTTT 58.260 39.130 0.00 0.00 0.00 2.52
282 283 4.338879 CTCCCTGACCATGAATTTGTCTT 58.661 43.478 0.00 0.00 0.00 3.01
283 284 3.308688 CCTCCCTGACCATGAATTTGTCT 60.309 47.826 0.00 0.00 0.00 3.41
284 285 3.019564 CCTCCCTGACCATGAATTTGTC 58.980 50.000 0.00 0.00 0.00 3.18
285 286 2.649312 TCCTCCCTGACCATGAATTTGT 59.351 45.455 0.00 0.00 0.00 2.83
286 287 3.370840 TCCTCCCTGACCATGAATTTG 57.629 47.619 0.00 0.00 0.00 2.32
287 288 3.528905 TCATCCTCCCTGACCATGAATTT 59.471 43.478 0.00 0.00 0.00 1.82
288 289 3.125656 TCATCCTCCCTGACCATGAATT 58.874 45.455 0.00 0.00 0.00 2.17
289 290 2.780414 TCATCCTCCCTGACCATGAAT 58.220 47.619 0.00 0.00 0.00 2.57
290 291 2.268796 TCATCCTCCCTGACCATGAA 57.731 50.000 0.00 0.00 0.00 2.57
291 292 2.268796 TTCATCCTCCCTGACCATGA 57.731 50.000 0.00 0.00 0.00 3.07
292 293 4.712051 TTATTCATCCTCCCTGACCATG 57.288 45.455 0.00 0.00 0.00 3.66
293 294 8.700145 TTATATTATTCATCCTCCCTGACCAT 57.300 34.615 0.00 0.00 0.00 3.55
294 295 7.182749 CCTTATATTATTCATCCTCCCTGACCA 59.817 40.741 0.00 0.00 0.00 4.02
295 296 7.569240 CCTTATATTATTCATCCTCCCTGACC 58.431 42.308 0.00 0.00 0.00 4.02
296 297 7.051000 GCCTTATATTATTCATCCTCCCTGAC 58.949 42.308 0.00 0.00 0.00 3.51
297 298 6.127054 CGCCTTATATTATTCATCCTCCCTGA 60.127 42.308 0.00 0.00 0.00 3.86
298 299 6.051717 CGCCTTATATTATTCATCCTCCCTG 58.948 44.000 0.00 0.00 0.00 4.45
299 300 5.726793 ACGCCTTATATTATTCATCCTCCCT 59.273 40.000 0.00 0.00 0.00 4.20
300 301 5.990668 ACGCCTTATATTATTCATCCTCCC 58.009 41.667 0.00 0.00 0.00 4.30
301 302 9.444600 TTTAACGCCTTATATTATTCATCCTCC 57.555 33.333 0.00 0.00 0.00 4.30
306 307 9.908152 GGCTTTTTAACGCCTTATATTATTCAT 57.092 29.630 2.98 0.00 42.98 2.57
307 308 8.354426 GGGCTTTTTAACGCCTTATATTATTCA 58.646 33.333 9.48 0.00 45.57 2.57
308 309 7.811236 GGGGCTTTTTAACGCCTTATATTATTC 59.189 37.037 9.48 0.00 45.57 1.75
309 310 7.288158 TGGGGCTTTTTAACGCCTTATATTATT 59.712 33.333 9.48 0.00 45.57 1.40
310 311 6.778559 TGGGGCTTTTTAACGCCTTATATTAT 59.221 34.615 9.48 0.00 45.57 1.28
311 312 6.127793 TGGGGCTTTTTAACGCCTTATATTA 58.872 36.000 9.48 0.00 45.57 0.98
312 313 4.957327 TGGGGCTTTTTAACGCCTTATATT 59.043 37.500 9.48 0.00 45.57 1.28
313 314 4.538738 TGGGGCTTTTTAACGCCTTATAT 58.461 39.130 9.48 0.00 45.57 0.86
314 315 3.949113 CTGGGGCTTTTTAACGCCTTATA 59.051 43.478 9.48 0.00 45.57 0.98
315 316 2.758423 CTGGGGCTTTTTAACGCCTTAT 59.242 45.455 9.48 0.00 45.57 1.73
316 317 2.164338 CTGGGGCTTTTTAACGCCTTA 58.836 47.619 9.48 0.00 45.57 2.69
317 318 0.966179 CTGGGGCTTTTTAACGCCTT 59.034 50.000 9.48 0.00 45.57 4.35
318 319 0.111639 TCTGGGGCTTTTTAACGCCT 59.888 50.000 9.48 0.00 45.57 5.52
319 320 1.182667 ATCTGGGGCTTTTTAACGCC 58.817 50.000 1.61 1.61 45.55 5.68
320 321 2.993220 CAAATCTGGGGCTTTTTAACGC 59.007 45.455 0.00 0.00 0.00 4.84
321 322 4.022329 AGACAAATCTGGGGCTTTTTAACG 60.022 41.667 0.00 0.00 32.29 3.18
322 323 5.468540 AGACAAATCTGGGGCTTTTTAAC 57.531 39.130 0.00 0.00 32.29 2.01
323 324 6.493189 AAAGACAAATCTGGGGCTTTTTAA 57.507 33.333 0.00 0.00 34.48 1.52
324 325 6.493189 AAAAGACAAATCTGGGGCTTTTTA 57.507 33.333 0.00 0.00 34.48 1.52
325 326 5.372343 AAAAGACAAATCTGGGGCTTTTT 57.628 34.783 0.00 0.00 34.48 1.94
326 327 5.372343 AAAAAGACAAATCTGGGGCTTTT 57.628 34.783 0.00 0.00 35.69 2.27
345 346 2.433604 TCAAATGAGGGCTGTGCAAAAA 59.566 40.909 0.00 0.00 0.00 1.94
346 347 2.037901 TCAAATGAGGGCTGTGCAAAA 58.962 42.857 0.00 0.00 0.00 2.44
347 348 1.702182 TCAAATGAGGGCTGTGCAAA 58.298 45.000 0.00 0.00 0.00 3.68
348 349 1.340889 GTTCAAATGAGGGCTGTGCAA 59.659 47.619 0.00 0.00 0.00 4.08
349 350 0.961019 GTTCAAATGAGGGCTGTGCA 59.039 50.000 0.00 0.00 0.00 4.57
350 351 0.109597 CGTTCAAATGAGGGCTGTGC 60.110 55.000 0.00 0.00 0.00 4.57
351 352 1.238439 ACGTTCAAATGAGGGCTGTG 58.762 50.000 0.00 0.00 0.00 3.66
352 353 2.851263 TACGTTCAAATGAGGGCTGT 57.149 45.000 0.00 0.00 0.00 4.40
353 354 4.701956 AAATACGTTCAAATGAGGGCTG 57.298 40.909 0.00 0.00 0.00 4.85
354 355 4.522789 ACAAAATACGTTCAAATGAGGGCT 59.477 37.500 0.00 0.00 0.00 5.19
355 356 4.805219 ACAAAATACGTTCAAATGAGGGC 58.195 39.130 0.00 0.00 0.00 5.19
356 357 5.183140 AGGACAAAATACGTTCAAATGAGGG 59.817 40.000 0.00 0.00 0.00 4.30
357 358 6.072728 TCAGGACAAAATACGTTCAAATGAGG 60.073 38.462 0.00 0.00 0.00 3.86
358 359 6.898041 TCAGGACAAAATACGTTCAAATGAG 58.102 36.000 0.00 0.00 0.00 2.90
359 360 6.869315 TCAGGACAAAATACGTTCAAATGA 57.131 33.333 0.00 0.00 0.00 2.57
360 361 7.922505 TTTCAGGACAAAATACGTTCAAATG 57.077 32.000 0.00 0.00 0.00 2.32
361 362 9.541143 AATTTTCAGGACAAAATACGTTCAAAT 57.459 25.926 0.00 0.00 35.35 2.32
362 363 8.934507 AATTTTCAGGACAAAATACGTTCAAA 57.065 26.923 0.00 0.00 35.35 2.69
363 364 8.934507 AAATTTTCAGGACAAAATACGTTCAA 57.065 26.923 0.00 0.00 35.35 2.69
364 365 9.453325 GTAAATTTTCAGGACAAAATACGTTCA 57.547 29.630 0.00 0.00 35.35 3.18
365 366 9.453325 TGTAAATTTTCAGGACAAAATACGTTC 57.547 29.630 0.00 0.00 35.35 3.95
366 367 9.240159 GTGTAAATTTTCAGGACAAAATACGTT 57.760 29.630 0.00 0.00 35.35 3.99
367 368 8.407064 TGTGTAAATTTTCAGGACAAAATACGT 58.593 29.630 0.00 0.00 35.35 3.57
368 369 8.687301 GTGTGTAAATTTTCAGGACAAAATACG 58.313 33.333 0.00 0.00 35.35 3.06
369 370 9.744468 AGTGTGTAAATTTTCAGGACAAAATAC 57.256 29.630 0.00 0.00 35.35 1.89
371 372 9.097257 CAAGTGTGTAAATTTTCAGGACAAAAT 57.903 29.630 0.00 0.00 37.53 1.82
372 373 7.064016 GCAAGTGTGTAAATTTTCAGGACAAAA 59.936 33.333 0.00 0.00 0.00 2.44
373 374 6.533367 GCAAGTGTGTAAATTTTCAGGACAAA 59.467 34.615 0.00 0.00 0.00 2.83
374 375 6.039616 GCAAGTGTGTAAATTTTCAGGACAA 58.960 36.000 0.00 0.00 0.00 3.18
375 376 5.587289 GCAAGTGTGTAAATTTTCAGGACA 58.413 37.500 0.00 0.00 0.00 4.02
376 377 4.675114 CGCAAGTGTGTAAATTTTCAGGAC 59.325 41.667 0.00 0.00 0.00 3.85
377 378 4.791411 GCGCAAGTGTGTAAATTTTCAGGA 60.791 41.667 0.30 0.00 41.68 3.86
378 379 3.425193 GCGCAAGTGTGTAAATTTTCAGG 59.575 43.478 0.30 0.00 41.68 3.86
379 380 4.041049 TGCGCAAGTGTGTAAATTTTCAG 58.959 39.130 8.16 0.00 41.68 3.02
380 381 3.794028 GTGCGCAAGTGTGTAAATTTTCA 59.206 39.130 14.00 0.00 41.68 2.69
381 382 4.041723 AGTGCGCAAGTGTGTAAATTTTC 58.958 39.130 14.00 0.00 41.68 2.29
382 383 4.040445 AGTGCGCAAGTGTGTAAATTTT 57.960 36.364 14.00 0.00 41.68 1.82
383 384 3.708563 AGTGCGCAAGTGTGTAAATTT 57.291 38.095 14.00 0.00 41.68 1.82
384 385 4.722194 CATAGTGCGCAAGTGTGTAAATT 58.278 39.130 14.00 0.00 41.68 1.82
385 386 3.426159 GCATAGTGCGCAAGTGTGTAAAT 60.426 43.478 14.00 0.00 41.68 1.40
386 387 2.095969 GCATAGTGCGCAAGTGTGTAAA 60.096 45.455 14.00 0.00 41.68 2.01
387 388 1.463056 GCATAGTGCGCAAGTGTGTAA 59.537 47.619 14.00 0.00 41.68 2.41
388 389 1.075542 GCATAGTGCGCAAGTGTGTA 58.924 50.000 14.00 0.00 41.68 2.90
389 390 1.577328 GGCATAGTGCGCAAGTGTGT 61.577 55.000 14.00 0.00 46.21 3.72
390 391 1.135315 GGCATAGTGCGCAAGTGTG 59.865 57.895 14.00 12.67 46.21 3.82
391 392 1.003355 AGGCATAGTGCGCAAGTGT 60.003 52.632 14.00 0.00 46.21 3.55
392 393 1.709147 GGAGGCATAGTGCGCAAGTG 61.709 60.000 14.00 12.78 46.21 3.16
393 394 1.450312 GGAGGCATAGTGCGCAAGT 60.450 57.895 14.00 4.92 46.21 3.16
394 395 0.816825 ATGGAGGCATAGTGCGCAAG 60.817 55.000 14.00 3.50 46.21 4.01
395 396 0.815213 GATGGAGGCATAGTGCGCAA 60.815 55.000 14.00 0.00 46.21 4.85
396 397 1.227645 GATGGAGGCATAGTGCGCA 60.228 57.895 5.66 5.66 46.21 6.09
397 398 0.318441 TAGATGGAGGCATAGTGCGC 59.682 55.000 0.00 0.00 46.21 6.09
398 399 2.495270 AGATAGATGGAGGCATAGTGCG 59.505 50.000 0.00 0.00 46.21 5.34
399 400 3.768757 AGAGATAGATGGAGGCATAGTGC 59.231 47.826 0.00 0.00 44.08 4.40
400 401 4.771577 ACAGAGATAGATGGAGGCATAGTG 59.228 45.833 0.00 0.00 0.00 2.74
401 402 5.009436 ACAGAGATAGATGGAGGCATAGT 57.991 43.478 0.00 0.00 0.00 2.12
402 403 7.658525 AATACAGAGATAGATGGAGGCATAG 57.341 40.000 0.00 0.00 0.00 2.23
403 404 8.441311 AAAATACAGAGATAGATGGAGGCATA 57.559 34.615 0.00 0.00 0.00 3.14
404 405 6.949117 AAATACAGAGATAGATGGAGGCAT 57.051 37.500 0.00 0.00 0.00 4.40
405 406 6.753913 AAAATACAGAGATAGATGGAGGCA 57.246 37.500 0.00 0.00 0.00 4.75
457 458 8.847196 TCCAAATGCAAAATTCATGAAAATTCA 58.153 25.926 13.09 7.61 42.14 2.57
458 459 9.337091 CTCCAAATGCAAAATTCATGAAAATTC 57.663 29.630 13.09 2.06 0.00 2.17
459 460 8.301002 CCTCCAAATGCAAAATTCATGAAAATT 58.699 29.630 13.09 8.07 0.00 1.82
460 461 7.576098 GCCTCCAAATGCAAAATTCATGAAAAT 60.576 33.333 13.09 1.49 0.00 1.82
461 462 6.294065 GCCTCCAAATGCAAAATTCATGAAAA 60.294 34.615 13.09 0.00 0.00 2.29
462 463 5.181622 GCCTCCAAATGCAAAATTCATGAAA 59.818 36.000 13.09 0.00 0.00 2.69
463 464 4.696402 GCCTCCAAATGCAAAATTCATGAA 59.304 37.500 11.26 11.26 0.00 2.57
464 465 4.255301 GCCTCCAAATGCAAAATTCATGA 58.745 39.130 0.00 0.00 0.00 3.07
465 466 3.375922 GGCCTCCAAATGCAAAATTCATG 59.624 43.478 0.00 0.00 0.00 3.07
466 467 3.264964 AGGCCTCCAAATGCAAAATTCAT 59.735 39.130 0.00 0.00 0.00 2.57
467 468 2.638855 AGGCCTCCAAATGCAAAATTCA 59.361 40.909 0.00 0.00 0.00 2.57
468 469 3.264947 GAGGCCTCCAAATGCAAAATTC 58.735 45.455 23.19 0.00 0.00 2.17
469 470 3.339253 GAGGCCTCCAAATGCAAAATT 57.661 42.857 23.19 0.00 0.00 1.82
488 489 1.418334 GAGGCTGAGCTCCTTATGGA 58.582 55.000 12.15 0.00 40.69 3.41
489 490 0.396060 GGAGGCTGAGCTCCTTATGG 59.604 60.000 12.15 0.00 36.84 2.74
490 491 1.126488 TGGAGGCTGAGCTCCTTATG 58.874 55.000 12.15 0.00 40.28 1.90
491 492 1.885049 TTGGAGGCTGAGCTCCTTAT 58.115 50.000 12.15 0.00 40.28 1.73
492 493 1.656587 TTTGGAGGCTGAGCTCCTTA 58.343 50.000 12.15 8.49 40.28 2.69
493 494 0.773644 TTTTGGAGGCTGAGCTCCTT 59.226 50.000 12.15 0.00 40.28 3.36
494 495 0.327591 CTTTTGGAGGCTGAGCTCCT 59.672 55.000 12.15 0.68 40.28 3.69
495 496 1.311651 GCTTTTGGAGGCTGAGCTCC 61.312 60.000 12.15 10.04 40.05 4.70
496 497 0.607489 TGCTTTTGGAGGCTGAGCTC 60.607 55.000 6.82 6.82 34.56 4.09
497 498 0.178981 TTGCTTTTGGAGGCTGAGCT 60.179 50.000 3.72 0.00 34.56 4.09
498 499 0.893447 ATTGCTTTTGGAGGCTGAGC 59.107 50.000 0.00 0.00 0.00 4.26
499 500 3.582780 GAAATTGCTTTTGGAGGCTGAG 58.417 45.455 0.00 0.00 0.00 3.35
500 501 2.299867 GGAAATTGCTTTTGGAGGCTGA 59.700 45.455 0.00 0.00 0.00 4.26
501 502 2.691927 GGAAATTGCTTTTGGAGGCTG 58.308 47.619 0.00 0.00 0.00 4.85
502 503 1.273327 CGGAAATTGCTTTTGGAGGCT 59.727 47.619 0.00 0.00 0.00 4.58
503 504 1.713597 CGGAAATTGCTTTTGGAGGC 58.286 50.000 0.00 0.00 0.00 4.70
504 505 1.273327 AGCGGAAATTGCTTTTGGAGG 59.727 47.619 0.00 0.00 40.48 4.30
505 506 2.730550 AGCGGAAATTGCTTTTGGAG 57.269 45.000 0.00 0.00 40.48 3.86
512 513 2.070262 GCTCAAAAGCGGAAATTGCT 57.930 45.000 0.00 0.00 46.68 3.91
536 537 8.606602 TCAAAACCTACGTAGTCTTTTTCTTTC 58.393 33.333 20.73 0.00 43.93 2.62
541 542 9.726232 GAAATTCAAAACCTACGTAGTCTTTTT 57.274 29.630 20.73 17.73 43.93 1.94
585 586 1.873903 GCGCGGATGTATCATCCAAGT 60.874 52.381 22.96 0.00 38.08 3.16
587 597 0.105778 TGCGCGGATGTATCATCCAA 59.894 50.000 22.96 7.60 38.08 3.53
613 623 4.335416 AGTAGCCATGTACATGTTTTGCT 58.665 39.130 28.53 28.53 36.81 3.91
639 649 9.959721 GCAGGGAATTGACTAGGATATTAATTA 57.040 33.333 0.00 0.00 0.00 1.40
640 650 8.448008 TGCAGGGAATTGACTAGGATATTAATT 58.552 33.333 0.00 0.00 0.00 1.40
641 651 7.988937 TGCAGGGAATTGACTAGGATATTAAT 58.011 34.615 0.00 0.00 0.00 1.40
642 652 7.387265 TGCAGGGAATTGACTAGGATATTAA 57.613 36.000 0.00 0.00 0.00 1.40
651 661 6.664816 AGAATCATTTTGCAGGGAATTGACTA 59.335 34.615 0.00 0.00 0.00 2.59
692 702 9.059260 AGCAGTTGCAGAATCATTTTTATTTTT 57.941 25.926 6.90 0.00 45.16 1.94
693 703 8.500773 CAGCAGTTGCAGAATCATTTTTATTTT 58.499 29.630 6.90 0.00 45.16 1.82
694 704 7.118680 CCAGCAGTTGCAGAATCATTTTTATTT 59.881 33.333 6.90 0.00 45.16 1.40
695 705 6.592607 CCAGCAGTTGCAGAATCATTTTTATT 59.407 34.615 6.90 0.00 45.16 1.40
697 707 5.010922 ACCAGCAGTTGCAGAATCATTTTTA 59.989 36.000 6.90 0.00 45.16 1.52
698 708 4.202284 ACCAGCAGTTGCAGAATCATTTTT 60.202 37.500 6.90 0.00 45.16 1.94
699 709 3.322828 ACCAGCAGTTGCAGAATCATTTT 59.677 39.130 6.90 0.00 45.16 1.82
700 710 2.895404 ACCAGCAGTTGCAGAATCATTT 59.105 40.909 6.90 0.00 45.16 2.32
701 711 2.522185 ACCAGCAGTTGCAGAATCATT 58.478 42.857 6.90 0.00 45.16 2.57
703 713 1.985473 AACCAGCAGTTGCAGAATCA 58.015 45.000 6.90 0.00 45.16 2.57
707 717 4.935352 AAAATTAACCAGCAGTTGCAGA 57.065 36.364 6.90 0.00 45.16 4.26
708 718 5.772521 AGTAAAATTAACCAGCAGTTGCAG 58.227 37.500 6.90 0.00 45.16 4.41
709 719 5.534654 AGAGTAAAATTAACCAGCAGTTGCA 59.465 36.000 6.90 0.00 45.16 4.08
714 724 7.320443 TGCATAGAGTAAAATTAACCAGCAG 57.680 36.000 0.00 0.00 0.00 4.24
751 761 0.736636 ATCGCGGAGTTACATCGTGA 59.263 50.000 6.13 13.56 45.28 4.35
760 770 2.507102 CGAGTGCATCGCGGAGTT 60.507 61.111 6.13 0.00 45.98 3.01
800 813 1.838073 GCGGTCCCCTCTTTTCTGGA 61.838 60.000 0.00 0.00 0.00 3.86
812 825 3.917760 ATCTGCTAGCGCGGTCCC 61.918 66.667 16.92 7.72 43.19 4.46
843 878 1.339247 ACCGGCGAATATTGTGTTGGA 60.339 47.619 9.30 0.00 0.00 3.53
863 898 1.436326 TGGGGTACTGTGTTGGCTAA 58.564 50.000 0.00 0.00 0.00 3.09
864 899 1.436326 TTGGGGTACTGTGTTGGCTA 58.564 50.000 0.00 0.00 0.00 3.93
866 901 1.067974 GTTTTGGGGTACTGTGTTGGC 59.932 52.381 0.00 0.00 0.00 4.52
868 903 1.684450 GGGTTTTGGGGTACTGTGTTG 59.316 52.381 0.00 0.00 0.00 3.33
876 924 0.774908 CACTCCTGGGTTTTGGGGTA 59.225 55.000 0.00 0.00 34.26 3.69
877 925 1.541672 CACTCCTGGGTTTTGGGGT 59.458 57.895 0.00 0.00 37.57 4.95
878 926 1.228862 CCACTCCTGGGTTTTGGGG 60.229 63.158 0.00 0.00 33.23 4.96
880 928 1.908299 GGCCACTCCTGGGTTTTGG 60.908 63.158 0.00 0.00 38.13 3.28
910 958 8.942033 TGCATTCCATGAAGATATATATAGCCT 58.058 33.333 4.38 0.00 0.00 4.58
959 1017 6.711277 ACCTATAGCAGATGAACTTTTGTGA 58.289 36.000 0.00 0.00 0.00 3.58
961 1019 7.852263 ACTACCTATAGCAGATGAACTTTTGT 58.148 34.615 6.60 0.00 30.75 2.83
967 1025 6.490721 ACCTGTACTACCTATAGCAGATGAAC 59.509 42.308 6.60 1.79 30.75 3.18
982 1040 4.430908 GCCATGACAACTACCTGTACTAC 58.569 47.826 0.00 0.00 0.00 2.73
1013 1081 4.395542 ACAGGAGTAACACGACTGATAGAC 59.604 45.833 0.00 0.00 33.24 2.59
1164 1232 0.036010 GGAAGTGCAGCCTAAGCAGA 60.036 55.000 0.00 0.00 43.63 4.26
1170 1238 1.185618 AGTCGTGGAAGTGCAGCCTA 61.186 55.000 0.00 0.00 0.00 3.93
1171 1239 2.031163 GTCGTGGAAGTGCAGCCT 59.969 61.111 0.00 0.00 0.00 4.58
1229 1301 1.064017 ACAAAAACAGGGTCAGCCAGA 60.064 47.619 0.00 0.00 36.17 3.86
1237 1309 3.965379 AAACCGAAACAAAAACAGGGT 57.035 38.095 0.00 0.00 0.00 4.34
1270 1359 4.279922 GGTTAACCACTGGCACTAATGTTT 59.720 41.667 20.12 0.00 35.64 2.83
1275 1373 1.417145 ACGGTTAACCACTGGCACTAA 59.583 47.619 24.14 0.00 35.83 2.24
1276 1374 1.050204 ACGGTTAACCACTGGCACTA 58.950 50.000 24.14 0.00 35.83 2.74
1277 1375 0.534203 CACGGTTAACCACTGGCACT 60.534 55.000 24.14 0.00 35.83 4.40
1278 1376 1.946267 CACGGTTAACCACTGGCAC 59.054 57.895 24.14 0.00 35.83 5.01
1279 1377 1.894756 GCACGGTTAACCACTGGCA 60.895 57.895 24.14 0.00 35.83 4.92
1280 1378 1.241315 ATGCACGGTTAACCACTGGC 61.241 55.000 24.14 19.39 35.83 4.85
1527 1658 2.972021 AGCAAATTAAGGTGGTGGCTTT 59.028 40.909 0.00 0.00 0.00 3.51
1532 1681 1.539388 TGCGAGCAAATTAAGGTGGTG 59.461 47.619 0.00 0.00 0.00 4.17
1562 1736 3.368531 GCAAACTGACAGGTCTACCTAGG 60.369 52.174 7.41 7.41 46.65 3.02
1564 1738 2.230508 CGCAAACTGACAGGTCTACCTA 59.769 50.000 7.51 0.00 46.65 3.08
1566 1740 1.429463 CGCAAACTGACAGGTCTACC 58.571 55.000 7.51 0.00 0.00 3.18
1662 2020 1.920325 CCTCCTCCCCAGCTGAACA 60.920 63.158 17.39 0.00 0.00 3.18
2244 3150 4.635765 AGACATGGTTCACGGTATCATTTG 59.364 41.667 0.00 0.00 0.00 2.32
2253 3159 4.275936 AGAAGAAAAAGACATGGTTCACGG 59.724 41.667 0.00 0.00 0.00 4.94
2275 3181 4.220602 AGGGCCACTGTGCTAATTAAAAAG 59.779 41.667 6.18 0.00 0.00 2.27
2283 3190 1.879575 ATAGAGGGCCACTGTGCTAA 58.120 50.000 14.21 0.00 0.00 3.09
2297 3204 7.664082 AAATATTGATGTCCTCGCAATAGAG 57.336 36.000 0.00 0.00 37.75 2.43
2302 3209 6.597672 AGTGTAAAATATTGATGTCCTCGCAA 59.402 34.615 0.00 0.00 0.00 4.85
2526 3819 7.394816 ACTGCATAAAGTTGTTGACCTACTAT 58.605 34.615 0.00 0.00 0.00 2.12
2561 3854 1.795768 ACGCCATATAGCCATTGACG 58.204 50.000 0.00 0.00 0.00 4.35
2562 3855 4.332819 GGATTACGCCATATAGCCATTGAC 59.667 45.833 0.00 0.00 0.00 3.18
2563 3856 4.019771 TGGATTACGCCATATAGCCATTGA 60.020 41.667 0.00 0.00 31.66 2.57
2564 3857 4.260985 TGGATTACGCCATATAGCCATTG 58.739 43.478 0.00 0.00 31.66 2.82
2565 3858 4.568072 TGGATTACGCCATATAGCCATT 57.432 40.909 0.00 0.00 31.66 3.16
2586 3880 7.898014 GGGAAGACCAAATAGGAATGTAATT 57.102 36.000 0.00 0.00 41.22 1.40
2638 3932 9.853555 TTTATATACAAGCAAACCATGTTTCAG 57.146 29.630 0.00 0.00 28.94 3.02
2681 3975 5.235850 TGGAAGTTAGCACTGTCCAAATA 57.764 39.130 5.96 0.00 37.31 1.40
2682 3976 4.074970 CTGGAAGTTAGCACTGTCCAAAT 58.925 43.478 8.43 0.00 38.59 2.32
2685 3979 2.839486 CTGGAAGTTAGCACTGTCCA 57.161 50.000 0.00 0.00 37.63 4.02
2716 4010 1.075542 CGTGCTGATCCGTTGCTTAA 58.924 50.000 0.00 0.00 0.00 1.85
2725 4019 3.321497 GGTAGATGAATCGTGCTGATCC 58.679 50.000 0.00 0.00 35.84 3.36
2730 4024 0.389391 CCCGGTAGATGAATCGTGCT 59.611 55.000 0.00 0.00 0.00 4.40
2735 4029 5.469084 GGAATTAACACCCGGTAGATGAATC 59.531 44.000 0.00 0.00 0.00 2.52
2896 4207 2.223144 CAGTTTTTCAATCGGAGCGACA 59.777 45.455 0.00 0.00 39.18 4.35
2935 4246 2.939460 TCGAAGATCTCATCGCAACA 57.061 45.000 11.22 0.00 37.05 3.33
3054 4952 8.538701 TGTCCGGGTAATTTCTATAGTAAACAA 58.461 33.333 0.00 0.00 0.00 2.83
3130 5029 1.699634 ACAGTGGCTTCTGCTTTCCTA 59.300 47.619 9.43 0.00 38.84 2.94
3142 5041 1.479709 AGCGAGAATCTACAGTGGCT 58.520 50.000 0.00 0.00 0.00 4.75
3144 5043 4.677378 CGAAATAGCGAGAATCTACAGTGG 59.323 45.833 0.00 0.00 0.00 4.00
3147 5046 6.693545 AGTTTCGAAATAGCGAGAATCTACAG 59.306 38.462 14.69 0.00 41.79 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.