Multiple sequence alignment - TraesCS2B01G125900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G125900 chr2B 100.000 3471 0 0 1 3471 94091539 94088069 0.000000e+00 6410.0
1 TraesCS2B01G125900 chr2B 93.256 1898 109 12 1578 3471 94251100 94249218 0.000000e+00 2778.0
2 TraesCS2B01G125900 chr2B 92.268 957 62 9 1526 2476 94099428 94098478 0.000000e+00 1347.0
3 TraesCS2B01G125900 chr2B 88.438 960 99 6 1585 2538 93408785 93409738 0.000000e+00 1147.0
4 TraesCS2B01G125900 chr2B 86.635 838 104 6 1708 2539 93109169 93110004 0.000000e+00 920.0
5 TraesCS2B01G125900 chr2B 94.898 294 15 0 932 1225 94251810 94251517 8.780000e-126 460.0
6 TraesCS2B01G125900 chr2B 85.263 285 34 4 944 1227 93108415 93108692 1.580000e-73 287.0
7 TraesCS2B01G125900 chr2B 85.603 257 24 6 942 1192 94101809 94101560 1.240000e-64 257.0
8 TraesCS2B01G125900 chr2B 84.848 264 23 8 398 651 94252275 94252019 2.070000e-62 250.0
9 TraesCS2B01G125900 chr2B 87.387 222 13 9 700 908 94252021 94251802 1.240000e-59 241.0
10 TraesCS2B01G125900 chr2B 83.871 186 12 7 150 320 94092077 94092259 9.970000e-36 161.0
11 TraesCS2B01G125900 chr2B 80.342 117 12 7 448 554 94252889 94252774 1.030000e-10 78.7
12 TraesCS2B01G125900 chr2B 90.164 61 2 1 2543 2603 93409770 93409826 3.710000e-10 76.8
13 TraesCS2B01G125900 chr2B 87.692 65 4 1 2539 2603 93110023 93110083 4.810000e-09 73.1
14 TraesCS2B01G125900 chr2B 84.416 77 4 4 486 554 94102727 94102651 6.220000e-08 69.4
15 TraesCS2B01G125900 chr2B 96.875 32 1 0 1181 1212 687228162 687228131 2.000000e-03 54.7
16 TraesCS2B01G125900 chr2D 92.142 2087 123 19 1403 3471 60167220 60165157 0.000000e+00 2907.0
17 TraesCS2B01G125900 chr2D 87.048 1050 106 22 1492 2532 59724496 59725524 0.000000e+00 1158.0
18 TraesCS2B01G125900 chr2D 92.796 583 26 6 366 935 60168204 60167625 0.000000e+00 830.0
19 TraesCS2B01G125900 chr2D 93.041 388 27 0 963 1350 60167630 60167243 5.030000e-158 568.0
20 TraesCS2B01G125900 chr2D 89.683 378 32 5 2161 2532 59836613 59836989 3.130000e-130 475.0
21 TraesCS2B01G125900 chr2D 87.456 287 28 4 942 1227 59723861 59724140 1.200000e-84 324.0
22 TraesCS2B01G125900 chr2D 96.875 32 1 0 1181 1212 572263490 572263459 2.000000e-03 54.7
23 TraesCS2B01G125900 chr2A 91.875 1280 87 14 1473 2744 60283657 60282387 0.000000e+00 1772.0
24 TraesCS2B01G125900 chr2A 92.774 1204 74 11 1519 2715 60760362 60759165 0.000000e+00 1729.0
25 TraesCS2B01G125900 chr2A 90.363 965 84 4 1578 2538 59718147 59719106 0.000000e+00 1258.0
26 TraesCS2B01G125900 chr2A 92.512 641 46 2 2832 3471 60281104 60280465 0.000000e+00 917.0
27 TraesCS2B01G125900 chr2A 92.610 636 45 2 2838 3471 60759174 60758539 0.000000e+00 913.0
28 TraesCS2B01G125900 chr2A 94.396 571 21 7 366 935 60761757 60761197 0.000000e+00 867.0
29 TraesCS2B01G125900 chr2A 92.717 357 22 1 963 1315 60761202 60760846 2.390000e-141 512.0
30 TraesCS2B01G125900 chr2A 87.469 407 29 13 419 822 60284662 60284275 1.900000e-122 449.0
31 TraesCS2B01G125900 chr2A 88.153 287 26 4 942 1227 59717428 59717707 5.550000e-88 335.0
32 TraesCS2B01G125900 chr2A 88.462 130 6 4 1403 1527 60760807 60760682 7.760000e-32 148.0
33 TraesCS2B01G125900 chr2A 97.143 70 2 0 839 908 60284140 60284071 6.090000e-23 119.0
34 TraesCS2B01G125900 chr2A 85.106 94 13 1 172 264 761485611 761485704 1.030000e-15 95.3
35 TraesCS2B01G125900 chr2A 89.062 64 3 1 2539 2602 59719126 59719185 3.710000e-10 76.8
36 TraesCS2B01G125900 chr2A 93.617 47 3 0 508 554 60762172 60762126 1.730000e-08 71.3
37 TraesCS2B01G125900 chr2A 96.875 32 1 0 1181 1212 711510050 711510019 2.000000e-03 54.7
38 TraesCS2B01G125900 chr6B 87.719 342 24 8 3 327 705319051 705319391 1.950000e-102 383.0
39 TraesCS2B01G125900 chr6B 88.976 127 9 4 150 274 705318324 705318201 6.000000e-33 152.0
40 TraesCS2B01G125900 chr6D 90.909 275 22 3 3 274 462617784 462618058 1.970000e-97 366.0
41 TraesCS2B01G125900 chr6D 90.551 127 7 4 150 274 462617023 462616900 2.770000e-36 163.0
42 TraesCS2B01G125900 chr1B 86.842 190 19 4 3 191 549715991 549715807 1.260000e-49 207.0
43 TraesCS2B01G125900 chr7D 82.653 196 30 3 3276 3471 586777926 586777735 1.660000e-38 171.0
44 TraesCS2B01G125900 chr3B 89.600 125 8 4 151 274 154190018 154190138 1.670000e-33 154.0
45 TraesCS2B01G125900 chr4A 86.170 94 12 1 172 264 13745697 13745790 2.200000e-17 100.0
46 TraesCS2B01G125900 chr4A 88.333 60 7 0 1165 1224 164688271 164688212 4.810000e-09 73.1
47 TraesCS2B01G125900 chr3A 82.031 128 7 7 215 327 691601932 691601806 1.030000e-15 95.3
48 TraesCS2B01G125900 chr1A 88.608 79 8 1 197 274 447003882 447003960 1.030000e-15 95.3
49 TraesCS2B01G125900 chr7A 80.882 136 10 7 207 327 4804529 4804663 3.690000e-15 93.5
50 TraesCS2B01G125900 chr4B 81.250 128 8 7 215 327 665226228 665226102 4.770000e-14 89.8
51 TraesCS2B01G125900 chr4B 88.333 60 7 0 1165 1224 387401689 387401748 4.810000e-09 73.1
52 TraesCS2B01G125900 chr4D 88.333 60 7 0 1165 1224 309943720 309943779 4.810000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G125900 chr2B 94088069 94091539 3470 True 6410.000000 6410 100.000000 1 3471 1 chr2B.!!$R1 3470
1 TraesCS2B01G125900 chr2B 94249218 94252889 3671 True 761.540000 2778 88.146200 398 3471 5 chr2B.!!$R4 3073
2 TraesCS2B01G125900 chr2B 93408785 93409826 1041 False 611.900000 1147 89.301000 1585 2603 2 chr2B.!!$F3 1018
3 TraesCS2B01G125900 chr2B 94098478 94102727 4249 True 557.800000 1347 87.429000 486 2476 3 chr2B.!!$R3 1990
4 TraesCS2B01G125900 chr2B 93108415 93110083 1668 False 426.700000 920 86.530000 944 2603 3 chr2B.!!$F2 1659
5 TraesCS2B01G125900 chr2D 60165157 60168204 3047 True 1435.000000 2907 92.659667 366 3471 3 chr2D.!!$R2 3105
6 TraesCS2B01G125900 chr2D 59723861 59725524 1663 False 741.000000 1158 87.252000 942 2532 2 chr2D.!!$F2 1590
7 TraesCS2B01G125900 chr2A 60280465 60284662 4197 True 814.250000 1772 92.249750 419 3471 4 chr2A.!!$R2 3052
8 TraesCS2B01G125900 chr2A 60758539 60762172 3633 True 706.716667 1729 92.429333 366 3471 6 chr2A.!!$R3 3105
9 TraesCS2B01G125900 chr2A 59717428 59719185 1757 False 556.600000 1258 89.192667 942 2602 3 chr2A.!!$F2 1660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 190 0.033601 TGGGCCCCACATGTCATAAC 60.034 55.0 22.27 0.00 0.00 1.89 F
219 220 0.036164 ACGGAGTTGGCTAATGTGCA 59.964 50.0 0.00 0.00 37.78 4.57 F
227 228 0.179225 GGCTAATGTGCACGTCAACG 60.179 55.0 12.96 0.12 46.33 4.10 F
257 258 0.467290 GGCCCAACCAGTCAGAAACA 60.467 55.0 0.00 0.00 38.86 2.83 F
258 259 0.668535 GCCCAACCAGTCAGAAACAC 59.331 55.0 0.00 0.00 0.00 3.32 F
917 1821 0.734889 GCACGCCATTGCATAGAGTT 59.265 50.0 0.00 0.00 42.49 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1365 3885 0.874390 TTGCGCTGAGTGTTCCATTC 59.126 50.000 9.73 0.0 0.00 2.67 R
1368 3888 1.098869 TTTTTGCGCTGAGTGTTCCA 58.901 45.000 9.73 0.0 0.00 3.53 R
1606 4947 1.256376 GCATCGATCGTCACACACATC 59.744 52.381 15.94 0.0 0.00 3.06 R
2134 5536 1.443702 CGCGTCGATGTTGGTCTCA 60.444 57.895 6.48 0.0 0.00 3.27 R
2265 5667 1.352352 CCTTCTGGGACATCAGGTTGT 59.648 52.381 0.00 0.0 38.20 3.32 R
2680 6112 5.063880 AGCTTGTAGAATTCGTTGGAAACT 58.936 37.500 0.00 0.0 46.99 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.652131 TGGCGGCGACCACCAATT 62.652 61.111 11.74 0.00 33.75 2.32
43 44 4.114997 GGCGGCGACCACCAATTG 62.115 66.667 12.98 0.00 0.00 2.32
44 45 4.776647 GCGGCGACCACCAATTGC 62.777 66.667 12.98 0.00 0.00 3.56
45 46 4.114997 CGGCGACCACCAATTGCC 62.115 66.667 0.00 0.00 42.51 4.52
46 47 2.676471 GGCGACCACCAATTGCCT 60.676 61.111 0.00 0.00 42.63 4.75
47 48 2.568090 GCGACCACCAATTGCCTG 59.432 61.111 0.00 0.00 0.00 4.85
48 49 2.568090 CGACCACCAATTGCCTGC 59.432 61.111 0.00 0.00 0.00 4.85
49 50 2.973082 GACCACCAATTGCCTGCC 59.027 61.111 0.00 0.00 0.00 4.85
50 51 2.604382 ACCACCAATTGCCTGCCC 60.604 61.111 0.00 0.00 0.00 5.36
51 52 3.393106 CCACCAATTGCCTGCCCC 61.393 66.667 0.00 0.00 0.00 5.80
52 53 3.762247 CACCAATTGCCTGCCCCG 61.762 66.667 0.00 0.00 0.00 5.73
54 55 3.762247 CCAATTGCCTGCCCCGTG 61.762 66.667 0.00 0.00 0.00 4.94
55 56 2.676121 CAATTGCCTGCCCCGTGA 60.676 61.111 0.00 0.00 0.00 4.35
56 57 2.117206 AATTGCCTGCCCCGTGAA 59.883 55.556 0.00 0.00 0.00 3.18
57 58 1.532794 AATTGCCTGCCCCGTGAAA 60.533 52.632 0.00 0.00 0.00 2.69
58 59 1.535204 AATTGCCTGCCCCGTGAAAG 61.535 55.000 0.00 0.00 0.00 2.62
61 62 3.058160 CCTGCCCCGTGAAAGCTG 61.058 66.667 0.00 0.00 0.00 4.24
62 63 3.741476 CTGCCCCGTGAAAGCTGC 61.741 66.667 0.00 0.00 0.00 5.25
67 68 3.434319 CCGTGAAAGCTGCGCCAT 61.434 61.111 4.18 0.00 0.00 4.40
68 69 2.202388 CGTGAAAGCTGCGCCATG 60.202 61.111 4.18 0.00 0.00 3.66
69 70 2.180017 GTGAAAGCTGCGCCATGG 59.820 61.111 7.63 7.63 0.00 3.66
71 72 2.751436 GAAAGCTGCGCCATGGGA 60.751 61.111 15.13 0.00 0.00 4.37
72 73 2.753043 AAAGCTGCGCCATGGGAG 60.753 61.111 15.13 0.00 0.00 4.30
82 83 3.214123 CATGGGAGGCCGCACATG 61.214 66.667 33.17 33.17 38.09 3.21
83 84 3.410628 ATGGGAGGCCGCACATGA 61.411 61.111 24.69 0.00 38.09 3.07
84 85 3.411114 ATGGGAGGCCGCACATGAG 62.411 63.158 24.69 0.00 38.09 2.90
86 87 4.479993 GGAGGCCGCACATGAGCT 62.480 66.667 13.36 0.00 0.00 4.09
87 88 2.894387 GAGGCCGCACATGAGCTC 60.894 66.667 13.36 6.82 0.00 4.09
88 89 4.827087 AGGCCGCACATGAGCTCG 62.827 66.667 13.36 4.34 0.00 5.03
100 101 3.839432 AGCTCGGGCGGCTCTAAC 61.839 66.667 9.56 0.00 44.37 2.34
102 103 3.458163 CTCGGGCGGCTCTAACCA 61.458 66.667 9.56 0.00 0.00 3.67
103 104 3.432051 CTCGGGCGGCTCTAACCAG 62.432 68.421 9.56 0.00 0.00 4.00
105 106 2.797278 CGGGCGGCTCTAACCAGAT 61.797 63.158 9.56 0.00 0.00 2.90
106 107 1.069935 GGGCGGCTCTAACCAGATC 59.930 63.158 9.56 0.00 0.00 2.75
108 109 0.466124 GGCGGCTCTAACCAGATCTT 59.534 55.000 0.00 0.00 0.00 2.40
109 110 1.576356 GCGGCTCTAACCAGATCTTG 58.424 55.000 0.00 0.00 0.00 3.02
110 111 1.137086 GCGGCTCTAACCAGATCTTGA 59.863 52.381 0.00 0.00 0.00 3.02
111 112 2.224161 GCGGCTCTAACCAGATCTTGAT 60.224 50.000 0.00 0.00 0.00 2.57
112 113 3.648009 CGGCTCTAACCAGATCTTGATC 58.352 50.000 0.00 2.60 0.00 2.92
114 115 3.389329 GGCTCTAACCAGATCTTGATCCA 59.611 47.826 0.00 0.00 0.00 3.41
115 116 4.502950 GGCTCTAACCAGATCTTGATCCAG 60.503 50.000 0.00 2.28 0.00 3.86
116 117 4.343526 GCTCTAACCAGATCTTGATCCAGA 59.656 45.833 0.00 0.00 0.00 3.86
117 118 5.163364 GCTCTAACCAGATCTTGATCCAGAA 60.163 44.000 0.00 0.00 0.00 3.02
118 119 6.464180 GCTCTAACCAGATCTTGATCCAGAAT 60.464 42.308 0.00 0.00 0.00 2.40
119 120 7.443302 TCTAACCAGATCTTGATCCAGAATT 57.557 36.000 0.00 0.00 0.00 2.17
121 122 8.331740 TCTAACCAGATCTTGATCCAGAATTTT 58.668 33.333 0.00 0.00 0.00 1.82
123 124 6.729428 ACCAGATCTTGATCCAGAATTTTCT 58.271 36.000 0.00 0.00 38.25 2.52
124 125 7.180663 ACCAGATCTTGATCCAGAATTTTCTT 58.819 34.615 0.00 0.00 34.74 2.52
125 126 7.673082 ACCAGATCTTGATCCAGAATTTTCTTT 59.327 33.333 0.00 0.00 34.74 2.52
127 128 9.355215 CAGATCTTGATCCAGAATTTTCTTTTG 57.645 33.333 0.00 0.00 34.74 2.44
129 130 9.570488 GATCTTGATCCAGAATTTTCTTTTGAG 57.430 33.333 0.00 0.00 34.74 3.02
130 131 7.889469 TCTTGATCCAGAATTTTCTTTTGAGG 58.111 34.615 0.00 0.00 34.74 3.86
131 132 7.725397 TCTTGATCCAGAATTTTCTTTTGAGGA 59.275 33.333 0.00 0.00 34.74 3.71
132 133 7.838079 TGATCCAGAATTTTCTTTTGAGGAA 57.162 32.000 0.00 0.00 34.74 3.36
133 134 8.248904 TGATCCAGAATTTTCTTTTGAGGAAA 57.751 30.769 0.00 0.00 34.74 3.13
136 137 7.846066 TCCAGAATTTTCTTTTGAGGAAACAA 58.154 30.769 0.00 0.00 34.74 2.83
137 138 8.485392 TCCAGAATTTTCTTTTGAGGAAACAAT 58.515 29.630 0.00 0.00 34.74 2.71
138 139 9.762933 CCAGAATTTTCTTTTGAGGAAACAATA 57.237 29.630 0.00 0.00 34.74 1.90
140 141 9.463443 AGAATTTTCTTTTGAGGAAACAATACG 57.537 29.630 0.00 0.00 32.55 3.06
141 142 9.244799 GAATTTTCTTTTGAGGAAACAATACGT 57.755 29.630 0.00 0.00 33.22 3.57
157 158 9.458374 AAACAATACGTTTGTTTCTTTATGGAG 57.542 29.630 23.66 0.00 46.14 3.86
158 159 8.385898 ACAATACGTTTGTTTCTTTATGGAGA 57.614 30.769 0.00 0.00 0.00 3.71
159 160 8.287503 ACAATACGTTTGTTTCTTTATGGAGAC 58.712 33.333 0.00 0.00 0.00 3.36
162 163 7.417496 ACGTTTGTTTCTTTATGGAGACTAC 57.583 36.000 0.00 0.00 0.00 2.73
167 168 6.472016 TGTTTCTTTATGGAGACTACATGCA 58.528 36.000 10.69 0.00 0.00 3.96
168 169 7.112122 TGTTTCTTTATGGAGACTACATGCAT 58.888 34.615 10.69 0.00 33.00 3.96
170 171 6.239217 TCTTTATGGAGACTACATGCATGT 57.761 37.500 33.20 33.20 44.48 3.21
171 172 6.051074 TCTTTATGGAGACTACATGCATGTG 58.949 40.000 36.72 27.75 41.89 3.21
172 173 2.696989 TGGAGACTACATGCATGTGG 57.303 50.000 36.72 35.23 43.84 4.17
173 174 1.210234 TGGAGACTACATGCATGTGGG 59.790 52.381 36.68 29.84 42.72 4.61
174 175 1.303309 GAGACTACATGCATGTGGGC 58.697 55.000 36.68 35.85 46.49 5.36
175 176 2.408333 GACTACATGCATGTGGGCC 58.592 57.895 36.68 26.71 40.98 5.80
176 177 1.076777 ACTACATGCATGTGGGCCC 60.077 57.895 36.68 17.59 42.72 5.80
187 188 4.178149 TGGGCCCCACATGTCATA 57.822 55.556 22.27 0.00 0.00 2.15
188 189 2.403348 TGGGCCCCACATGTCATAA 58.597 52.632 22.27 0.00 0.00 1.90
189 190 0.033601 TGGGCCCCACATGTCATAAC 60.034 55.000 22.27 0.00 0.00 1.89
190 191 1.101049 GGGCCCCACATGTCATAACG 61.101 60.000 12.23 0.00 0.00 3.18
192 193 0.393808 GCCCCACATGTCATAACGGT 60.394 55.000 0.00 0.00 0.00 4.83
193 194 1.663695 CCCCACATGTCATAACGGTC 58.336 55.000 0.00 0.00 0.00 4.79
194 195 1.065782 CCCCACATGTCATAACGGTCA 60.066 52.381 0.00 0.00 0.00 4.02
196 197 3.278574 CCCACATGTCATAACGGTCAAT 58.721 45.455 0.00 0.00 0.00 2.57
198 199 4.191544 CCACATGTCATAACGGTCAATCT 58.808 43.478 0.00 0.00 0.00 2.40
199 200 5.356426 CCACATGTCATAACGGTCAATCTA 58.644 41.667 0.00 0.00 0.00 1.98
200 201 5.815222 CCACATGTCATAACGGTCAATCTAA 59.185 40.000 0.00 0.00 0.00 2.10
201 202 6.238103 CCACATGTCATAACGGTCAATCTAAC 60.238 42.308 0.00 0.00 0.00 2.34
203 204 4.426416 TGTCATAACGGTCAATCTAACGG 58.574 43.478 0.00 0.00 0.00 4.44
218 219 2.854522 ACGGAGTTGGCTAATGTGC 58.145 52.632 0.00 0.00 37.78 4.57
219 220 0.036164 ACGGAGTTGGCTAATGTGCA 59.964 50.000 0.00 0.00 37.78 4.57
220 221 0.447801 CGGAGTTGGCTAATGTGCAC 59.552 55.000 10.75 10.75 34.04 4.57
221 222 0.447801 GGAGTTGGCTAATGTGCACG 59.552 55.000 13.13 0.00 34.04 5.34
222 223 1.156736 GAGTTGGCTAATGTGCACGT 58.843 50.000 13.13 9.52 34.04 4.49
223 224 1.128692 GAGTTGGCTAATGTGCACGTC 59.871 52.381 12.96 0.00 34.04 4.34
224 225 0.871722 GTTGGCTAATGTGCACGTCA 59.128 50.000 12.96 1.83 34.04 4.35
226 227 0.871722 TGGCTAATGTGCACGTCAAC 59.128 50.000 12.96 4.37 34.04 3.18
227 228 0.179225 GGCTAATGTGCACGTCAACG 60.179 55.000 12.96 0.12 46.33 4.10
228 229 0.789383 GCTAATGTGCACGTCAACGC 60.789 55.000 12.96 8.82 44.43 4.84
229 230 0.790207 CTAATGTGCACGTCAACGCT 59.210 50.000 12.96 0.00 44.43 5.07
230 231 1.194547 CTAATGTGCACGTCAACGCTT 59.805 47.619 12.96 0.00 44.43 4.68
231 232 1.222300 AATGTGCACGTCAACGCTTA 58.778 45.000 12.96 0.00 44.43 3.09
232 233 0.511221 ATGTGCACGTCAACGCTTAC 59.489 50.000 13.13 0.14 44.43 2.34
243 244 4.690719 CGCTTACGTGTGGGCCCA 62.691 66.667 24.45 24.45 33.53 5.36
244 245 2.281900 GCTTACGTGTGGGCCCAA 60.282 61.111 30.64 14.78 0.00 4.12
245 246 2.622962 GCTTACGTGTGGGCCCAAC 61.623 63.158 30.64 24.42 0.00 3.77
246 247 1.969589 CTTACGTGTGGGCCCAACC 60.970 63.158 30.64 19.29 37.93 3.77
247 248 2.684192 CTTACGTGTGGGCCCAACCA 62.684 60.000 30.64 19.80 42.05 3.67
248 249 2.684192 TTACGTGTGGGCCCAACCAG 62.684 60.000 30.64 20.51 42.20 4.00
249 250 4.579384 CGTGTGGGCCCAACCAGT 62.579 66.667 30.64 0.00 42.20 4.00
250 251 2.597510 GTGTGGGCCCAACCAGTC 60.598 66.667 30.64 14.22 42.20 3.51
252 253 2.282462 GTGGGCCCAACCAGTCAG 60.282 66.667 30.64 0.00 42.20 3.51
253 254 2.449518 TGGGCCCAACCAGTCAGA 60.450 61.111 26.33 0.00 42.05 3.27
254 255 2.081787 TGGGCCCAACCAGTCAGAA 61.082 57.895 26.33 0.00 42.05 3.02
256 257 1.179174 GGGCCCAACCAGTCAGAAAC 61.179 60.000 19.95 0.00 42.05 2.78
257 258 0.467290 GGCCCAACCAGTCAGAAACA 60.467 55.000 0.00 0.00 38.86 2.83
258 259 0.668535 GCCCAACCAGTCAGAAACAC 59.331 55.000 0.00 0.00 0.00 3.32
259 260 0.944386 CCCAACCAGTCAGAAACACG 59.056 55.000 0.00 0.00 0.00 4.49
260 261 1.663695 CCAACCAGTCAGAAACACGT 58.336 50.000 0.00 0.00 0.00 4.49
262 263 2.422127 CCAACCAGTCAGAAACACGTTT 59.578 45.455 0.00 0.00 35.14 3.60
264 265 4.260620 CCAACCAGTCAGAAACACGTTTAG 60.261 45.833 0.00 0.00 32.11 1.85
265 266 4.395959 ACCAGTCAGAAACACGTTTAGA 57.604 40.909 0.00 0.00 32.11 2.10
266 267 4.761975 ACCAGTCAGAAACACGTTTAGAA 58.238 39.130 0.00 0.00 32.11 2.10
267 268 4.809426 ACCAGTCAGAAACACGTTTAGAAG 59.191 41.667 0.00 0.00 32.11 2.85
268 269 5.047847 CCAGTCAGAAACACGTTTAGAAGA 58.952 41.667 0.00 0.00 32.11 2.87
269 270 5.175856 CCAGTCAGAAACACGTTTAGAAGAG 59.824 44.000 0.00 0.00 32.11 2.85
272 273 3.807622 CAGAAACACGTTTAGAAGAGCCA 59.192 43.478 0.00 0.00 32.11 4.75
273 274 4.272504 CAGAAACACGTTTAGAAGAGCCAA 59.727 41.667 0.00 0.00 32.11 4.52
275 276 2.132762 ACACGTTTAGAAGAGCCAACG 58.867 47.619 1.94 1.94 45.87 4.10
277 278 1.342174 ACGTTTAGAAGAGCCAACGGA 59.658 47.619 8.04 0.00 44.95 4.69
278 279 1.725164 CGTTTAGAAGAGCCAACGGAC 59.275 52.381 0.00 0.00 38.65 4.79
280 281 3.335579 GTTTAGAAGAGCCAACGGACAT 58.664 45.455 0.00 0.00 0.00 3.06
283 284 1.556911 AGAAGAGCCAACGGACATGAT 59.443 47.619 0.00 0.00 0.00 2.45
285 286 2.898729 AGAGCCAACGGACATGATAG 57.101 50.000 0.00 0.00 0.00 2.08
286 287 2.111384 AGAGCCAACGGACATGATAGT 58.889 47.619 0.00 0.00 0.00 2.12
288 289 3.055094 AGAGCCAACGGACATGATAGTTT 60.055 43.478 0.00 0.00 0.00 2.66
289 290 3.686016 AGCCAACGGACATGATAGTTTT 58.314 40.909 0.00 0.00 0.00 2.43
290 291 4.079253 AGCCAACGGACATGATAGTTTTT 58.921 39.130 0.00 0.00 0.00 1.94
293 294 5.123344 GCCAACGGACATGATAGTTTTTAGT 59.877 40.000 0.00 0.00 0.00 2.24
294 295 6.674760 GCCAACGGACATGATAGTTTTTAGTC 60.675 42.308 0.00 0.00 0.00 2.59
295 296 6.370442 CCAACGGACATGATAGTTTTTAGTCA 59.630 38.462 0.00 0.00 0.00 3.41
296 297 7.094975 CCAACGGACATGATAGTTTTTAGTCAA 60.095 37.037 0.00 0.00 0.00 3.18
297 298 7.596749 ACGGACATGATAGTTTTTAGTCAAG 57.403 36.000 0.00 0.00 0.00 3.02
298 299 6.594159 ACGGACATGATAGTTTTTAGTCAAGG 59.406 38.462 0.00 0.00 0.00 3.61
299 300 6.816640 CGGACATGATAGTTTTTAGTCAAGGA 59.183 38.462 0.00 0.00 0.00 3.36
300 301 7.495934 CGGACATGATAGTTTTTAGTCAAGGAT 59.504 37.037 0.00 0.00 0.00 3.24
314 315 8.890410 TTAGTCAAGGATTAGTAGTAAGTGGT 57.110 34.615 0.00 0.00 0.00 4.16
315 316 9.979897 TTAGTCAAGGATTAGTAGTAAGTGGTA 57.020 33.333 0.00 0.00 0.00 3.25
316 317 8.522542 AGTCAAGGATTAGTAGTAAGTGGTAG 57.477 38.462 0.00 0.00 0.00 3.18
317 318 8.114743 AGTCAAGGATTAGTAGTAAGTGGTAGT 58.885 37.037 0.00 0.00 0.00 2.73
318 319 8.747471 GTCAAGGATTAGTAGTAAGTGGTAGTT 58.253 37.037 0.00 0.00 0.00 2.24
320 321 9.367444 CAAGGATTAGTAGTAAGTGGTAGTTTG 57.633 37.037 0.00 0.00 0.00 2.93
321 322 8.661752 AGGATTAGTAGTAAGTGGTAGTTTGT 57.338 34.615 0.00 0.00 0.00 2.83
325 326 6.278172 AGTAGTAAGTGGTAGTTTGTAGGC 57.722 41.667 0.00 0.00 0.00 3.93
326 327 5.776716 AGTAGTAAGTGGTAGTTTGTAGGCA 59.223 40.000 0.00 0.00 0.00 4.75
327 328 5.757099 AGTAAGTGGTAGTTTGTAGGCAT 57.243 39.130 0.00 0.00 0.00 4.40
330 331 4.367039 AGTGGTAGTTTGTAGGCATGTT 57.633 40.909 0.00 0.00 0.00 2.71
331 332 4.725490 AGTGGTAGTTTGTAGGCATGTTT 58.275 39.130 0.00 0.00 0.00 2.83
333 334 3.823873 TGGTAGTTTGTAGGCATGTTTGG 59.176 43.478 0.00 0.00 0.00 3.28
334 335 4.076394 GGTAGTTTGTAGGCATGTTTGGA 58.924 43.478 0.00 0.00 0.00 3.53
336 337 4.789012 AGTTTGTAGGCATGTTTGGATG 57.211 40.909 0.00 0.00 0.00 3.51
339 340 5.304101 AGTTTGTAGGCATGTTTGGATGAAA 59.696 36.000 0.00 0.00 0.00 2.69
342 343 4.771577 TGTAGGCATGTTTGGATGAAATGT 59.228 37.500 0.00 0.00 0.00 2.71
343 344 4.196626 AGGCATGTTTGGATGAAATGTG 57.803 40.909 0.00 0.00 0.00 3.21
344 345 3.055675 AGGCATGTTTGGATGAAATGTGG 60.056 43.478 0.00 0.00 0.00 4.17
345 346 2.674357 GCATGTTTGGATGAAATGTGGC 59.326 45.455 0.00 0.00 0.00 5.01
346 347 3.865302 GCATGTTTGGATGAAATGTGGCA 60.865 43.478 0.00 0.00 0.00 4.92
347 348 3.663995 TGTTTGGATGAAATGTGGCAG 57.336 42.857 0.00 0.00 0.00 4.85
350 351 4.141756 TGTTTGGATGAAATGTGGCAGTTT 60.142 37.500 0.00 0.00 0.00 2.66
352 353 4.686191 TGGATGAAATGTGGCAGTTTTT 57.314 36.364 0.00 0.00 0.00 1.94
467 529 7.581814 TCCCAATCACTCCACATCAAATATTA 58.418 34.615 0.00 0.00 0.00 0.98
476 538 8.960591 ACTCCACATCAAATATTAACCTTTCTG 58.039 33.333 0.00 0.00 0.00 3.02
477 539 8.877864 TCCACATCAAATATTAACCTTTCTGT 57.122 30.769 0.00 0.00 0.00 3.41
506 1267 1.995376 ACTCCCGGACAAATTTTGCT 58.005 45.000 0.73 0.00 0.00 3.91
595 1366 7.157347 CAGTAATGCTAGCTTATGATTCAGGA 58.843 38.462 17.23 0.00 0.00 3.86
692 1467 1.071699 GTGCCTCTGTCACAACCCTAA 59.928 52.381 0.00 0.00 34.73 2.69
780 1560 8.830915 ACCATACTATATAGATCTCCAACCAG 57.169 38.462 16.79 0.00 0.00 4.00
793 1573 1.401931 CCAACCAGAAAAGATGCAGCG 60.402 52.381 0.00 0.00 0.00 5.18
807 1593 1.601903 TGCAGCGTCAAACCACTAAAG 59.398 47.619 0.00 0.00 0.00 1.85
901 1805 6.538742 AGGTGTATGTAGTCATTGTAATGCAC 59.461 38.462 0.00 0.00 36.36 4.57
908 1812 2.853594 GTCATTGTAATGCACGCCATTG 59.146 45.455 11.02 0.00 43.77 2.82
909 1813 1.589320 CATTGTAATGCACGCCATTGC 59.411 47.619 11.02 10.23 43.77 3.56
916 1820 2.397751 GCACGCCATTGCATAGAGT 58.602 52.632 0.00 0.00 42.49 3.24
917 1821 0.734889 GCACGCCATTGCATAGAGTT 59.265 50.000 0.00 0.00 42.49 3.01
918 1822 1.532505 GCACGCCATTGCATAGAGTTG 60.533 52.381 0.00 0.00 42.49 3.16
919 1823 0.734889 ACGCCATTGCATAGAGTTGC 59.265 50.000 0.00 0.00 43.07 4.17
920 1824 1.019673 CGCCATTGCATAGAGTTGCT 58.980 50.000 0.00 0.00 43.18 3.91
921 1825 1.402968 CGCCATTGCATAGAGTTGCTT 59.597 47.619 0.00 0.00 43.18 3.91
922 1826 2.159338 CGCCATTGCATAGAGTTGCTTT 60.159 45.455 0.00 0.00 43.18 3.51
923 1827 3.442100 GCCATTGCATAGAGTTGCTTTC 58.558 45.455 0.00 0.00 43.18 2.62
924 1828 3.119388 GCCATTGCATAGAGTTGCTTTCA 60.119 43.478 0.00 0.00 43.18 2.69
925 1829 4.441079 GCCATTGCATAGAGTTGCTTTCAT 60.441 41.667 0.00 0.00 43.18 2.57
926 1830 5.279384 CCATTGCATAGAGTTGCTTTCATC 58.721 41.667 0.00 0.00 43.18 2.92
927 1831 5.067413 CCATTGCATAGAGTTGCTTTCATCT 59.933 40.000 0.00 0.00 43.18 2.90
928 1832 5.556355 TTGCATAGAGTTGCTTTCATCTG 57.444 39.130 0.00 0.00 43.18 2.90
929 1833 4.835678 TGCATAGAGTTGCTTTCATCTGA 58.164 39.130 0.00 0.00 43.18 3.27
930 1834 5.247862 TGCATAGAGTTGCTTTCATCTGAA 58.752 37.500 0.00 0.00 43.18 3.02
931 1835 5.122869 TGCATAGAGTTGCTTTCATCTGAAC 59.877 40.000 0.00 0.00 43.18 3.18
932 1836 5.122869 GCATAGAGTTGCTTTCATCTGAACA 59.877 40.000 0.00 0.00 39.57 3.18
933 1837 6.675002 GCATAGAGTTGCTTTCATCTGAACAG 60.675 42.308 0.00 0.00 39.57 3.16
934 1838 4.070716 AGAGTTGCTTTCATCTGAACAGG 58.929 43.478 1.93 0.00 33.13 4.00
935 1839 2.555757 AGTTGCTTTCATCTGAACAGGC 59.444 45.455 1.93 0.00 33.13 4.85
936 1840 1.538047 TGCTTTCATCTGAACAGGCC 58.462 50.000 0.00 0.00 33.13 5.19
937 1841 1.202915 TGCTTTCATCTGAACAGGCCA 60.203 47.619 5.01 0.00 33.13 5.36
938 1842 1.200948 GCTTTCATCTGAACAGGCCAC 59.799 52.381 5.01 0.00 33.13 5.01
939 1843 2.787994 CTTTCATCTGAACAGGCCACT 58.212 47.619 5.01 0.00 33.13 4.00
960 1864 7.442364 GCCACTAATTGCATAGACTTCTAATCA 59.558 37.037 1.33 0.00 31.39 2.57
1012 1916 1.402968 GTACACTGATGGCAATGGCAG 59.597 52.381 16.10 4.27 42.43 4.85
1212 3445 2.653890 CATTTCCACGACTGCTTTGTG 58.346 47.619 0.00 0.47 39.17 3.33
1334 3854 4.828387 AGTCCTAGATCGACCAGTTAATCC 59.172 45.833 0.00 0.00 0.00 3.01
1350 3870 5.072600 AGTTAATCCCACTGTGGTCAAAGTA 59.927 40.000 24.32 8.55 35.17 2.24
1352 3872 3.935818 TCCCACTGTGGTCAAAGTAAA 57.064 42.857 24.32 0.00 35.17 2.01
1354 3874 2.293399 CCCACTGTGGTCAAAGTAAAGC 59.707 50.000 24.32 0.00 35.17 3.51
1355 3875 3.214328 CCACTGTGGTCAAAGTAAAGCT 58.786 45.455 18.76 0.00 31.35 3.74
1360 3880 4.385825 TGTGGTCAAAGTAAAGCTAGTGG 58.614 43.478 0.00 0.00 0.00 4.00
1361 3881 4.101898 TGTGGTCAAAGTAAAGCTAGTGGA 59.898 41.667 0.00 0.00 0.00 4.02
1362 3882 5.061179 GTGGTCAAAGTAAAGCTAGTGGAA 58.939 41.667 0.00 0.00 0.00 3.53
1363 3883 5.705905 GTGGTCAAAGTAAAGCTAGTGGAAT 59.294 40.000 0.00 0.00 0.00 3.01
1364 3884 5.705441 TGGTCAAAGTAAAGCTAGTGGAATG 59.295 40.000 0.00 0.00 0.00 2.67
1365 3885 5.123979 GGTCAAAGTAAAGCTAGTGGAATGG 59.876 44.000 0.00 0.00 0.00 3.16
1366 3886 5.938125 GTCAAAGTAAAGCTAGTGGAATGGA 59.062 40.000 0.00 0.00 0.00 3.41
1367 3887 6.430000 GTCAAAGTAAAGCTAGTGGAATGGAA 59.570 38.462 0.00 0.00 0.00 3.53
1368 3888 7.121315 GTCAAAGTAAAGCTAGTGGAATGGAAT 59.879 37.037 0.00 0.00 0.00 3.01
1369 3889 7.121168 TCAAAGTAAAGCTAGTGGAATGGAATG 59.879 37.037 0.00 0.00 0.00 2.67
1370 3890 5.440610 AGTAAAGCTAGTGGAATGGAATGG 58.559 41.667 0.00 0.00 0.00 3.16
1371 3891 4.591321 AAAGCTAGTGGAATGGAATGGA 57.409 40.909 0.00 0.00 0.00 3.41
1372 3892 4.591321 AAGCTAGTGGAATGGAATGGAA 57.409 40.909 0.00 0.00 0.00 3.53
1373 3893 3.891049 AGCTAGTGGAATGGAATGGAAC 58.109 45.455 0.00 0.00 0.00 3.62
1385 3905 4.549793 TGGAACACTCAGCGCAAA 57.450 50.000 11.47 0.00 0.00 3.68
1386 3906 2.787191 TGGAACACTCAGCGCAAAA 58.213 47.368 11.47 0.00 0.00 2.44
1387 3907 1.098869 TGGAACACTCAGCGCAAAAA 58.901 45.000 11.47 0.00 0.00 1.94
1498 4151 7.999679 TGGCCATTCTAATTAATCTGACTTTG 58.000 34.615 0.00 0.00 0.00 2.77
1751 5143 1.210931 CAACATCAAGGCGCAGGTG 59.789 57.895 10.83 7.66 0.00 4.00
1799 5191 4.814294 GCCGACATCCTCGCCGTT 62.814 66.667 0.00 0.00 41.46 4.44
1864 5259 4.275689 CCACTGTAGTCAATTTGCTGAACA 59.724 41.667 0.00 0.00 0.00 3.18
1873 5268 1.087202 TTTGCTGAACACACGCGACT 61.087 50.000 15.93 0.00 0.00 4.18
2029 5431 4.681978 GTCGCCAACCTCACCGCT 62.682 66.667 0.00 0.00 0.00 5.52
2080 5482 2.039624 ATGGTCGCCCTCTCTGGT 59.960 61.111 0.00 0.00 0.00 4.00
2134 5536 1.871418 TCAGGAGCAGGCTCTACAAT 58.129 50.000 19.67 0.47 42.38 2.71
2265 5667 2.988493 GGTTCGACAACGCATACTACAA 59.012 45.455 0.00 0.00 39.58 2.41
2608 6039 6.406961 GGGTGTGATGTGATGTATCTCAACTA 60.407 42.308 0.00 0.00 36.50 2.24
2629 6060 7.631717 ACTATCAAGTATTTCCCTTTGCTTC 57.368 36.000 0.00 0.00 32.84 3.86
2660 6091 2.295909 TGCCCAAGTGCACATAACTTTC 59.704 45.455 21.04 0.72 35.70 2.62
2661 6092 2.295909 GCCCAAGTGCACATAACTTTCA 59.704 45.455 21.04 0.00 35.70 2.69
2730 6162 1.135960 TCCAGTCCACACAACCATGA 58.864 50.000 0.00 0.00 0.00 3.07
2777 7454 0.693049 AAGAGCGACTCCAACCCATT 59.307 50.000 3.66 0.00 0.00 3.16
2836 7513 1.140312 TGCCATCCTCAATACCCCTC 58.860 55.000 0.00 0.00 0.00 4.30
2850 7527 3.520691 ACCCCTCTAGTTTTCCAAACC 57.479 47.619 0.00 0.00 0.00 3.27
2893 7570 5.297569 ACACCTTCTCCATCCTAATAAGC 57.702 43.478 0.00 0.00 0.00 3.09
2917 7594 2.683933 TCTTGCTCCCTCCCCGTC 60.684 66.667 0.00 0.00 0.00 4.79
2935 7613 5.433526 CCCGTCCCTAATTCTGAATACAAA 58.566 41.667 2.85 0.00 0.00 2.83
3003 7681 0.035056 CCACATCTCTTGTCACCCCC 60.035 60.000 0.00 0.00 36.00 5.40
3006 7684 0.543749 CATCTCTTGTCACCCCCTCC 59.456 60.000 0.00 0.00 0.00 4.30
3012 7690 2.043248 GTCACCCCCTCCGCTCTA 60.043 66.667 0.00 0.00 0.00 2.43
3055 7733 0.744414 CTACACACCGCCCATTCCTG 60.744 60.000 0.00 0.00 0.00 3.86
3081 7759 1.410004 CAACCACCTATCTCCGCCTA 58.590 55.000 0.00 0.00 0.00 3.93
3128 7806 3.126831 CTCACTATCGGAATCAACCAGC 58.873 50.000 0.00 0.00 0.00 4.85
3152 7830 1.226746 CGAGTGCCGGAAACTTTTCT 58.773 50.000 5.05 0.00 37.35 2.52
3198 7876 4.139038 GGTAAAGTCACCAGCCAAAACTA 58.861 43.478 0.00 0.00 38.55 2.24
3235 7913 0.400213 TCGGAAAAGGCAGGACACAT 59.600 50.000 0.00 0.00 0.00 3.21
3372 8051 2.345760 GGTGGGCCTCGTTCGTCTA 61.346 63.158 4.53 0.00 0.00 2.59
3375 8054 0.899720 TGGGCCTCGTTCGTCTATTT 59.100 50.000 4.53 0.00 0.00 1.40
3464 8143 3.746432 GCGTATTTGCCCCTAGGTACAAT 60.746 47.826 8.29 3.28 34.57 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.776647 GCAATTGGTGGTCGCCGC 62.777 66.667 7.72 1.37 0.00 6.53
29 30 2.676471 AGGCAATTGGTGGTCGCC 60.676 61.111 7.72 0.00 43.31 5.54
30 31 2.568090 CAGGCAATTGGTGGTCGC 59.432 61.111 7.72 0.00 0.00 5.19
31 32 2.568090 GCAGGCAATTGGTGGTCG 59.432 61.111 7.72 0.00 0.00 4.79
32 33 2.649129 GGGCAGGCAATTGGTGGTC 61.649 63.158 7.72 0.00 0.00 4.02
33 34 2.604382 GGGCAGGCAATTGGTGGT 60.604 61.111 7.72 0.00 0.00 4.16
34 35 3.393106 GGGGCAGGCAATTGGTGG 61.393 66.667 7.72 0.00 0.00 4.61
35 36 3.762247 CGGGGCAGGCAATTGGTG 61.762 66.667 7.72 0.00 0.00 4.17
36 37 4.299796 ACGGGGCAGGCAATTGGT 62.300 61.111 7.72 0.00 0.00 3.67
37 38 3.762247 CACGGGGCAGGCAATTGG 61.762 66.667 7.72 0.00 0.00 3.16
38 39 1.814772 TTTCACGGGGCAGGCAATTG 61.815 55.000 0.00 0.00 0.00 2.32
39 40 1.532794 TTTCACGGGGCAGGCAATT 60.533 52.632 0.00 0.00 0.00 2.32
40 41 1.978617 CTTTCACGGGGCAGGCAAT 60.979 57.895 0.00 0.00 0.00 3.56
41 42 2.597217 CTTTCACGGGGCAGGCAA 60.597 61.111 0.00 0.00 0.00 4.52
44 45 3.058160 CAGCTTTCACGGGGCAGG 61.058 66.667 0.00 0.00 0.00 4.85
45 46 3.741476 GCAGCTTTCACGGGGCAG 61.741 66.667 0.00 0.00 0.00 4.85
64 65 4.511246 ATGTGCGGCCTCCCATGG 62.511 66.667 4.14 4.14 0.00 3.66
66 67 3.410628 TCATGTGCGGCCTCCCAT 61.411 61.111 0.00 0.00 0.00 4.00
67 68 4.100084 CTCATGTGCGGCCTCCCA 62.100 66.667 0.00 0.00 0.00 4.37
69 70 4.479993 AGCTCATGTGCGGCCTCC 62.480 66.667 13.68 0.00 38.13 4.30
71 72 4.827087 CGAGCTCATGTGCGGCCT 62.827 66.667 15.40 0.00 38.13 5.19
83 84 3.839432 GTTAGAGCCGCCCGAGCT 61.839 66.667 0.00 0.00 45.23 4.09
84 85 4.893601 GGTTAGAGCCGCCCGAGC 62.894 72.222 0.00 0.00 0.00 5.03
85 86 3.432051 CTGGTTAGAGCCGCCCGAG 62.432 68.421 0.00 0.00 0.00 4.63
86 87 3.458163 CTGGTTAGAGCCGCCCGA 61.458 66.667 0.00 0.00 0.00 5.14
87 88 2.701163 GATCTGGTTAGAGCCGCCCG 62.701 65.000 0.00 0.00 36.14 6.13
88 89 1.069935 GATCTGGTTAGAGCCGCCC 59.930 63.158 0.00 0.00 36.14 6.13
89 90 0.466124 AAGATCTGGTTAGAGCCGCC 59.534 55.000 0.00 0.00 40.18 6.13
90 91 1.137086 TCAAGATCTGGTTAGAGCCGC 59.863 52.381 0.00 0.00 40.18 6.53
91 92 3.553922 GGATCAAGATCTGGTTAGAGCCG 60.554 52.174 9.69 0.00 40.18 5.52
94 95 6.477053 TTCTGGATCAAGATCTGGTTAGAG 57.523 41.667 0.00 0.00 37.92 2.43
95 96 7.443302 AATTCTGGATCAAGATCTGGTTAGA 57.557 36.000 0.00 0.00 37.92 2.10
96 97 8.517062 AAAATTCTGGATCAAGATCTGGTTAG 57.483 34.615 0.00 0.00 37.92 2.34
98 99 7.180663 AGAAAATTCTGGATCAAGATCTGGTT 58.819 34.615 0.00 0.00 37.92 3.67
99 100 6.729428 AGAAAATTCTGGATCAAGATCTGGT 58.271 36.000 0.00 0.00 37.92 4.00
100 101 7.642082 AAGAAAATTCTGGATCAAGATCTGG 57.358 36.000 0.00 0.00 37.65 3.86
102 103 9.305555 TCAAAAGAAAATTCTGGATCAAGATCT 57.694 29.630 0.00 0.00 37.65 2.75
103 104 9.570488 CTCAAAAGAAAATTCTGGATCAAGATC 57.430 33.333 0.00 1.40 37.65 2.75
105 106 7.725397 TCCTCAAAAGAAAATTCTGGATCAAGA 59.275 33.333 0.00 0.00 37.65 3.02
106 107 7.889469 TCCTCAAAAGAAAATTCTGGATCAAG 58.111 34.615 0.00 0.00 37.65 3.02
108 109 7.838079 TTCCTCAAAAGAAAATTCTGGATCA 57.162 32.000 0.00 0.00 37.65 2.92
109 110 8.143835 TGTTTCCTCAAAAGAAAATTCTGGATC 58.856 33.333 0.00 0.00 37.65 3.36
110 111 8.021898 TGTTTCCTCAAAAGAAAATTCTGGAT 57.978 30.769 0.00 0.00 37.65 3.41
111 112 7.416964 TGTTTCCTCAAAAGAAAATTCTGGA 57.583 32.000 0.00 0.00 37.65 3.86
112 113 8.667076 ATTGTTTCCTCAAAAGAAAATTCTGG 57.333 30.769 0.00 0.00 37.65 3.86
114 115 9.463443 CGTATTGTTTCCTCAAAAGAAAATTCT 57.537 29.630 0.00 0.00 39.74 2.40
115 116 9.244799 ACGTATTGTTTCCTCAAAAGAAAATTC 57.755 29.630 0.00 0.00 34.21 2.17
116 117 9.594478 AACGTATTGTTTCCTCAAAAGAAAATT 57.406 25.926 0.00 0.00 37.59 1.82
132 133 8.842280 TCTCCATAAAGAAACAAACGTATTGTT 58.158 29.630 17.44 17.44 43.72 2.83
133 134 8.287503 GTCTCCATAAAGAAACAAACGTATTGT 58.712 33.333 9.39 9.39 0.00 2.71
136 137 9.148104 GTAGTCTCCATAAAGAAACAAACGTAT 57.852 33.333 0.00 0.00 0.00 3.06
137 138 8.143193 TGTAGTCTCCATAAAGAAACAAACGTA 58.857 33.333 0.00 0.00 0.00 3.57
138 139 6.987992 TGTAGTCTCCATAAAGAAACAAACGT 59.012 34.615 0.00 0.00 0.00 3.99
140 141 7.750903 GCATGTAGTCTCCATAAAGAAACAAAC 59.249 37.037 0.00 0.00 31.18 2.93
141 142 7.446931 TGCATGTAGTCTCCATAAAGAAACAAA 59.553 33.333 0.00 0.00 31.18 2.83
143 144 6.472016 TGCATGTAGTCTCCATAAAGAAACA 58.528 36.000 0.00 0.00 31.65 2.83
144 145 6.985188 TGCATGTAGTCTCCATAAAGAAAC 57.015 37.500 0.00 0.00 0.00 2.78
145 146 7.066163 CACATGCATGTAGTCTCCATAAAGAAA 59.934 37.037 30.92 0.00 39.39 2.52
146 147 6.539826 CACATGCATGTAGTCTCCATAAAGAA 59.460 38.462 30.92 0.00 39.39 2.52
147 148 6.051074 CACATGCATGTAGTCTCCATAAAGA 58.949 40.000 30.92 0.00 39.39 2.52
148 149 5.237996 CCACATGCATGTAGTCTCCATAAAG 59.762 44.000 30.92 13.98 39.39 1.85
150 151 4.444733 CCCACATGCATGTAGTCTCCATAA 60.445 45.833 30.92 0.00 39.39 1.90
153 154 1.210234 CCCACATGCATGTAGTCTCCA 59.790 52.381 30.92 0.00 39.39 3.86
154 155 1.959042 CCCACATGCATGTAGTCTCC 58.041 55.000 30.92 0.00 39.39 3.71
155 156 1.303309 GCCCACATGCATGTAGTCTC 58.697 55.000 30.92 14.80 39.39 3.36
157 158 1.103398 GGGCCCACATGCATGTAGTC 61.103 60.000 30.92 24.78 39.39 2.59
158 159 1.076777 GGGCCCACATGCATGTAGT 60.077 57.895 30.92 7.28 39.39 2.73
159 160 1.829533 GGGGCCCACATGCATGTAG 60.830 63.158 30.92 23.87 39.39 2.74
170 171 0.033601 GTTATGACATGTGGGGCCCA 60.034 55.000 24.76 24.76 0.00 5.36
171 172 1.101049 CGTTATGACATGTGGGGCCC 61.101 60.000 18.17 18.17 0.00 5.80
172 173 1.101049 CCGTTATGACATGTGGGGCC 61.101 60.000 1.15 0.00 0.00 5.80
173 174 0.393808 ACCGTTATGACATGTGGGGC 60.394 55.000 1.15 0.00 0.00 5.80
174 175 1.065782 TGACCGTTATGACATGTGGGG 60.066 52.381 1.15 0.00 0.00 4.96
175 176 2.394930 TGACCGTTATGACATGTGGG 57.605 50.000 1.15 0.00 0.00 4.61
176 177 4.191544 AGATTGACCGTTATGACATGTGG 58.808 43.478 1.15 0.00 0.00 4.17
180 181 5.047847 CCGTTAGATTGACCGTTATGACAT 58.952 41.667 0.00 0.00 0.00 3.06
181 182 4.158209 TCCGTTAGATTGACCGTTATGACA 59.842 41.667 0.00 0.00 0.00 3.58
182 183 4.675510 TCCGTTAGATTGACCGTTATGAC 58.324 43.478 0.00 0.00 0.00 3.06
183 184 4.400251 ACTCCGTTAGATTGACCGTTATGA 59.600 41.667 0.00 0.00 0.00 2.15
185 186 4.996788 ACTCCGTTAGATTGACCGTTAT 57.003 40.909 0.00 0.00 0.00 1.89
186 187 4.487948 CAACTCCGTTAGATTGACCGTTA 58.512 43.478 0.00 0.00 0.00 3.18
187 188 3.323243 CAACTCCGTTAGATTGACCGTT 58.677 45.455 0.00 0.00 0.00 4.44
188 189 2.353406 CCAACTCCGTTAGATTGACCGT 60.353 50.000 0.00 0.00 0.00 4.83
189 190 2.268298 CCAACTCCGTTAGATTGACCG 58.732 52.381 0.00 0.00 0.00 4.79
190 191 2.007608 GCCAACTCCGTTAGATTGACC 58.992 52.381 0.00 0.00 0.00 4.02
192 193 4.811969 TTAGCCAACTCCGTTAGATTGA 57.188 40.909 0.00 0.00 0.00 2.57
193 194 4.876107 ACATTAGCCAACTCCGTTAGATTG 59.124 41.667 0.00 0.00 0.00 2.67
194 195 4.876107 CACATTAGCCAACTCCGTTAGATT 59.124 41.667 0.00 0.00 0.00 2.40
196 197 3.857052 CACATTAGCCAACTCCGTTAGA 58.143 45.455 0.00 0.00 0.00 2.10
198 199 2.289756 TGCACATTAGCCAACTCCGTTA 60.290 45.455 0.00 0.00 0.00 3.18
199 200 1.165270 GCACATTAGCCAACTCCGTT 58.835 50.000 0.00 0.00 0.00 4.44
200 201 0.036164 TGCACATTAGCCAACTCCGT 59.964 50.000 0.00 0.00 0.00 4.69
201 202 0.447801 GTGCACATTAGCCAACTCCG 59.552 55.000 13.17 0.00 0.00 4.63
203 204 1.128692 GACGTGCACATTAGCCAACTC 59.871 52.381 18.64 0.00 0.00 3.01
210 211 0.790207 AGCGTTGACGTGCACATTAG 59.210 50.000 18.64 2.44 42.22 1.73
211 212 1.222300 AAGCGTTGACGTGCACATTA 58.778 45.000 18.64 0.00 42.22 1.90
212 213 1.070175 GTAAGCGTTGACGTGCACATT 60.070 47.619 18.64 2.00 42.22 2.71
213 214 0.511221 GTAAGCGTTGACGTGCACAT 59.489 50.000 18.64 0.00 42.22 3.21
214 215 1.813212 CGTAAGCGTTGACGTGCACA 61.813 55.000 18.64 0.00 42.22 4.57
216 217 3.226712 CGTAAGCGTTGACGTGCA 58.773 55.556 0.21 0.00 42.22 4.57
226 227 4.690719 TGGGCCCACACGTAAGCG 62.691 66.667 24.45 0.00 45.62 4.68
227 228 2.281900 TTGGGCCCACACGTAAGC 60.282 61.111 28.70 0.00 45.62 3.09
228 229 2.684192 TGGTTGGGCCCACACGTAAG 62.684 60.000 28.70 0.00 39.40 2.34
229 230 2.113562 GGTTGGGCCCACACGTAA 59.886 61.111 28.70 5.47 0.00 3.18
230 231 3.169242 TGGTTGGGCCCACACGTA 61.169 61.111 28.70 6.45 36.04 3.57
231 232 4.579384 CTGGTTGGGCCCACACGT 62.579 66.667 28.70 0.00 36.04 4.49
232 233 4.579384 ACTGGTTGGGCCCACACG 62.579 66.667 28.70 15.96 36.04 4.49
234 235 3.099841 TGACTGGTTGGGCCCACA 61.100 61.111 28.70 20.17 36.04 4.17
235 236 2.282462 CTGACTGGTTGGGCCCAC 60.282 66.667 28.70 19.81 36.04 4.61
238 239 0.467290 TGTTTCTGACTGGTTGGGCC 60.467 55.000 0.00 0.00 37.90 5.80
239 240 0.668535 GTGTTTCTGACTGGTTGGGC 59.331 55.000 0.00 0.00 0.00 5.36
241 242 1.663695 ACGTGTTTCTGACTGGTTGG 58.336 50.000 0.00 0.00 0.00 3.77
243 244 4.761975 TCTAAACGTGTTTCTGACTGGTT 58.238 39.130 0.47 0.00 34.23 3.67
244 245 4.395959 TCTAAACGTGTTTCTGACTGGT 57.604 40.909 0.47 0.00 34.23 4.00
245 246 5.047847 TCTTCTAAACGTGTTTCTGACTGG 58.952 41.667 0.47 0.00 34.23 4.00
246 247 5.332656 GCTCTTCTAAACGTGTTTCTGACTG 60.333 44.000 0.47 0.00 34.23 3.51
247 248 4.745620 GCTCTTCTAAACGTGTTTCTGACT 59.254 41.667 0.47 0.00 34.23 3.41
248 249 4.084485 GGCTCTTCTAAACGTGTTTCTGAC 60.084 45.833 0.47 0.00 34.23 3.51
249 250 4.056050 GGCTCTTCTAAACGTGTTTCTGA 58.944 43.478 0.47 0.00 34.23 3.27
250 251 3.807622 TGGCTCTTCTAAACGTGTTTCTG 59.192 43.478 0.47 0.00 34.23 3.02
252 253 4.524749 GTTGGCTCTTCTAAACGTGTTTC 58.475 43.478 0.47 0.00 34.23 2.78
253 254 3.001939 CGTTGGCTCTTCTAAACGTGTTT 59.998 43.478 3.21 3.21 40.26 2.83
254 255 2.542595 CGTTGGCTCTTCTAAACGTGTT 59.457 45.455 0.00 0.00 40.26 3.32
256 257 1.459592 CCGTTGGCTCTTCTAAACGTG 59.540 52.381 6.12 0.00 42.81 4.49
257 258 1.342174 TCCGTTGGCTCTTCTAAACGT 59.658 47.619 6.12 0.00 42.81 3.99
258 259 1.725164 GTCCGTTGGCTCTTCTAAACG 59.275 52.381 0.00 0.00 43.69 3.60
259 260 2.762745 TGTCCGTTGGCTCTTCTAAAC 58.237 47.619 0.00 0.00 0.00 2.01
260 261 3.007506 TCATGTCCGTTGGCTCTTCTAAA 59.992 43.478 0.00 0.00 0.00 1.85
262 263 2.176045 TCATGTCCGTTGGCTCTTCTA 58.824 47.619 0.00 0.00 0.00 2.10
264 265 2.029838 ATCATGTCCGTTGGCTCTTC 57.970 50.000 0.00 0.00 0.00 2.87
265 266 2.501723 ACTATCATGTCCGTTGGCTCTT 59.498 45.455 0.00 0.00 0.00 2.85
266 267 2.111384 ACTATCATGTCCGTTGGCTCT 58.889 47.619 0.00 0.00 0.00 4.09
267 268 2.604046 ACTATCATGTCCGTTGGCTC 57.396 50.000 0.00 0.00 0.00 4.70
268 269 3.350219 AAACTATCATGTCCGTTGGCT 57.650 42.857 0.00 0.00 0.00 4.75
269 270 4.434713 AAAAACTATCATGTCCGTTGGC 57.565 40.909 0.00 0.00 0.00 4.52
272 273 7.119262 CCTTGACTAAAAACTATCATGTCCGTT 59.881 37.037 0.00 0.00 0.00 4.44
273 274 6.594159 CCTTGACTAAAAACTATCATGTCCGT 59.406 38.462 0.00 0.00 0.00 4.69
275 276 8.738645 ATCCTTGACTAAAAACTATCATGTCC 57.261 34.615 0.00 0.00 0.00 4.02
288 289 9.317827 ACCACTTACTACTAATCCTTGACTAAA 57.682 33.333 0.00 0.00 0.00 1.85
289 290 8.890410 ACCACTTACTACTAATCCTTGACTAA 57.110 34.615 0.00 0.00 0.00 2.24
290 291 9.624373 CTACCACTTACTACTAATCCTTGACTA 57.376 37.037 0.00 0.00 0.00 2.59
293 294 8.890410 AACTACCACTTACTACTAATCCTTGA 57.110 34.615 0.00 0.00 0.00 3.02
294 295 9.367444 CAAACTACCACTTACTACTAATCCTTG 57.633 37.037 0.00 0.00 0.00 3.61
295 296 9.097946 ACAAACTACCACTTACTACTAATCCTT 57.902 33.333 0.00 0.00 0.00 3.36
296 297 8.661752 ACAAACTACCACTTACTACTAATCCT 57.338 34.615 0.00 0.00 0.00 3.24
299 300 8.473219 GCCTACAAACTACCACTTACTACTAAT 58.527 37.037 0.00 0.00 0.00 1.73
300 301 7.451255 TGCCTACAAACTACCACTTACTACTAA 59.549 37.037 0.00 0.00 0.00 2.24
302 303 5.776716 TGCCTACAAACTACCACTTACTACT 59.223 40.000 0.00 0.00 0.00 2.57
303 304 6.029346 TGCCTACAAACTACCACTTACTAC 57.971 41.667 0.00 0.00 0.00 2.73
304 305 6.211986 ACATGCCTACAAACTACCACTTACTA 59.788 38.462 0.00 0.00 0.00 1.82
305 306 5.012768 ACATGCCTACAAACTACCACTTACT 59.987 40.000 0.00 0.00 0.00 2.24
306 307 5.243207 ACATGCCTACAAACTACCACTTAC 58.757 41.667 0.00 0.00 0.00 2.34
307 308 5.492855 ACATGCCTACAAACTACCACTTA 57.507 39.130 0.00 0.00 0.00 2.24
308 309 4.367039 ACATGCCTACAAACTACCACTT 57.633 40.909 0.00 0.00 0.00 3.16
310 311 4.320935 CCAAACATGCCTACAAACTACCAC 60.321 45.833 0.00 0.00 0.00 4.16
311 312 3.823873 CCAAACATGCCTACAAACTACCA 59.176 43.478 0.00 0.00 0.00 3.25
312 313 4.076394 TCCAAACATGCCTACAAACTACC 58.924 43.478 0.00 0.00 0.00 3.18
313 314 5.414454 TCATCCAAACATGCCTACAAACTAC 59.586 40.000 0.00 0.00 0.00 2.73
314 315 5.565509 TCATCCAAACATGCCTACAAACTA 58.434 37.500 0.00 0.00 0.00 2.24
315 316 4.406456 TCATCCAAACATGCCTACAAACT 58.594 39.130 0.00 0.00 0.00 2.66
316 317 4.782019 TCATCCAAACATGCCTACAAAC 57.218 40.909 0.00 0.00 0.00 2.93
317 318 5.798125 TTTCATCCAAACATGCCTACAAA 57.202 34.783 0.00 0.00 0.00 2.83
318 319 5.245751 ACATTTCATCCAAACATGCCTACAA 59.754 36.000 0.00 0.00 0.00 2.41
320 321 5.104374 CACATTTCATCCAAACATGCCTAC 58.896 41.667 0.00 0.00 0.00 3.18
321 322 4.160065 CCACATTTCATCCAAACATGCCTA 59.840 41.667 0.00 0.00 0.00 3.93
323 324 3.264104 CCACATTTCATCCAAACATGCC 58.736 45.455 0.00 0.00 0.00 4.40
325 326 3.927854 TGCCACATTTCATCCAAACATG 58.072 40.909 0.00 0.00 0.00 3.21
326 327 3.579586 ACTGCCACATTTCATCCAAACAT 59.420 39.130 0.00 0.00 0.00 2.71
327 328 2.964464 ACTGCCACATTTCATCCAAACA 59.036 40.909 0.00 0.00 0.00 2.83
330 331 4.686191 AAAACTGCCACATTTCATCCAA 57.314 36.364 0.00 0.00 0.00 3.53
331 332 4.686191 AAAAACTGCCACATTTCATCCA 57.314 36.364 0.00 0.00 0.00 3.41
430 492 4.603131 AGTGATTGGGATGTGCAAATAGT 58.397 39.130 0.00 0.00 0.00 2.12
431 493 4.037208 GGAGTGATTGGGATGTGCAAATAG 59.963 45.833 0.00 0.00 0.00 1.73
432 494 3.953612 GGAGTGATTGGGATGTGCAAATA 59.046 43.478 0.00 0.00 0.00 1.40
467 529 6.468543 GGAGTTCAGATTCTACAGAAAGGTT 58.531 40.000 0.00 0.00 37.61 3.50
476 538 2.758979 TGTCCGGGAGTTCAGATTCTAC 59.241 50.000 0.00 0.00 0.00 2.59
477 539 3.095912 TGTCCGGGAGTTCAGATTCTA 57.904 47.619 0.00 0.00 0.00 2.10
506 1267 1.378911 CAGGTAGCATGCCAGCCAA 60.379 57.895 15.66 0.00 46.86 4.52
595 1366 3.522750 TGGGAAATGGGCAGCATTATTTT 59.477 39.130 0.00 0.00 0.00 1.82
692 1467 7.412627 GGAAATCTATAGGGTAGCTAGTAGGT 58.587 42.308 7.12 7.12 0.00 3.08
780 1560 2.287547 TGGTTTGACGCTGCATCTTTTC 60.288 45.455 0.00 0.00 0.00 2.29
793 1573 8.403236 ACACTGTTTAATCTTTAGTGGTTTGAC 58.597 33.333 0.00 0.00 42.18 3.18
807 1593 5.049680 ACATGACAACCGACACTGTTTAATC 60.050 40.000 0.00 0.00 0.00 1.75
901 1805 3.539253 GCAACTCTATGCAATGGCG 57.461 52.632 0.00 0.00 45.70 5.69
908 1812 5.122869 TGTTCAGATGAAAGCAACTCTATGC 59.877 40.000 0.00 0.00 46.78 3.14
909 1813 6.183360 CCTGTTCAGATGAAAGCAACTCTATG 60.183 42.308 1.00 0.00 35.58 2.23
910 1814 5.879223 CCTGTTCAGATGAAAGCAACTCTAT 59.121 40.000 1.00 0.00 35.58 1.98
911 1815 5.240891 CCTGTTCAGATGAAAGCAACTCTA 58.759 41.667 1.00 0.00 35.58 2.43
912 1816 4.070716 CCTGTTCAGATGAAAGCAACTCT 58.929 43.478 1.00 0.00 35.58 3.24
913 1817 3.365767 GCCTGTTCAGATGAAAGCAACTC 60.366 47.826 1.00 0.00 35.58 3.01
914 1818 2.555757 GCCTGTTCAGATGAAAGCAACT 59.444 45.455 1.00 0.00 35.58 3.16
915 1819 2.352127 GGCCTGTTCAGATGAAAGCAAC 60.352 50.000 0.00 0.00 35.58 4.17
916 1820 1.888512 GGCCTGTTCAGATGAAAGCAA 59.111 47.619 0.00 0.00 35.58 3.91
917 1821 1.202915 TGGCCTGTTCAGATGAAAGCA 60.203 47.619 3.32 2.21 35.58 3.91
918 1822 1.200948 GTGGCCTGTTCAGATGAAAGC 59.799 52.381 3.32 1.46 35.58 3.51
919 1823 2.787994 AGTGGCCTGTTCAGATGAAAG 58.212 47.619 3.32 0.00 35.58 2.62
920 1824 2.957402 AGTGGCCTGTTCAGATGAAA 57.043 45.000 3.32 0.00 35.58 2.69
921 1825 4.574674 ATTAGTGGCCTGTTCAGATGAA 57.425 40.909 3.32 0.00 0.00 2.57
922 1826 4.264253 CAATTAGTGGCCTGTTCAGATGA 58.736 43.478 3.32 0.00 0.00 2.92
923 1827 3.181493 GCAATTAGTGGCCTGTTCAGATG 60.181 47.826 3.32 0.00 0.00 2.90
924 1828 3.019564 GCAATTAGTGGCCTGTTCAGAT 58.980 45.455 3.32 0.00 0.00 2.90
925 1829 2.224744 TGCAATTAGTGGCCTGTTCAGA 60.225 45.455 3.32 0.00 0.00 3.27
926 1830 2.161855 TGCAATTAGTGGCCTGTTCAG 58.838 47.619 3.32 0.00 0.00 3.02
927 1831 2.284754 TGCAATTAGTGGCCTGTTCA 57.715 45.000 3.32 0.00 0.00 3.18
928 1832 4.035675 GTCTATGCAATTAGTGGCCTGTTC 59.964 45.833 3.32 0.00 0.00 3.18
929 1833 3.947834 GTCTATGCAATTAGTGGCCTGTT 59.052 43.478 3.32 0.00 0.00 3.16
930 1834 3.200825 AGTCTATGCAATTAGTGGCCTGT 59.799 43.478 3.32 0.00 0.00 4.00
931 1835 3.813443 AGTCTATGCAATTAGTGGCCTG 58.187 45.455 3.32 0.00 0.00 4.85
932 1836 4.164988 AGAAGTCTATGCAATTAGTGGCCT 59.835 41.667 3.32 0.00 0.00 5.19
933 1837 4.455606 AGAAGTCTATGCAATTAGTGGCC 58.544 43.478 0.00 0.00 0.00 5.36
934 1838 7.442364 TGATTAGAAGTCTATGCAATTAGTGGC 59.558 37.037 0.00 0.00 0.00 5.01
935 1839 8.768955 GTGATTAGAAGTCTATGCAATTAGTGG 58.231 37.037 0.00 0.00 0.00 4.00
936 1840 9.317936 TGTGATTAGAAGTCTATGCAATTAGTG 57.682 33.333 0.00 0.00 0.00 2.74
937 1841 9.890629 TTGTGATTAGAAGTCTATGCAATTAGT 57.109 29.630 0.00 0.00 0.00 2.24
939 1843 9.665719 TGTTGTGATTAGAAGTCTATGCAATTA 57.334 29.630 0.00 0.00 0.00 1.40
1012 1916 1.216710 CCGACAGAGAAGAGGCCAC 59.783 63.158 5.01 0.00 0.00 5.01
1212 3445 1.065564 AGATGAGAGGGACTTGCTTGC 60.066 52.381 0.00 0.00 41.55 4.01
1334 3854 3.214328 AGCTTTACTTTGACCACAGTGG 58.786 45.455 18.93 18.93 45.02 4.00
1350 3870 4.591321 TCCATTCCATTCCACTAGCTTT 57.409 40.909 0.00 0.00 0.00 3.51
1352 3872 3.266772 TGTTCCATTCCATTCCACTAGCT 59.733 43.478 0.00 0.00 0.00 3.32
1354 3874 4.848357 AGTGTTCCATTCCATTCCACTAG 58.152 43.478 0.00 0.00 30.45 2.57
1355 3875 4.288366 TGAGTGTTCCATTCCATTCCACTA 59.712 41.667 0.00 0.00 32.26 2.74
1360 3880 2.096496 CGCTGAGTGTTCCATTCCATTC 59.904 50.000 0.00 0.00 0.00 2.67
1361 3881 2.086869 CGCTGAGTGTTCCATTCCATT 58.913 47.619 0.00 0.00 0.00 3.16
1362 3882 1.742761 CGCTGAGTGTTCCATTCCAT 58.257 50.000 0.00 0.00 0.00 3.41
1363 3883 0.955428 GCGCTGAGTGTTCCATTCCA 60.955 55.000 0.00 0.00 0.00 3.53
1364 3884 0.955428 TGCGCTGAGTGTTCCATTCC 60.955 55.000 9.73 0.00 0.00 3.01
1365 3885 0.874390 TTGCGCTGAGTGTTCCATTC 59.126 50.000 9.73 0.00 0.00 2.67
1366 3886 1.317613 TTTGCGCTGAGTGTTCCATT 58.682 45.000 9.73 0.00 0.00 3.16
1367 3887 1.317613 TTTTGCGCTGAGTGTTCCAT 58.682 45.000 9.73 0.00 0.00 3.41
1368 3888 1.098869 TTTTTGCGCTGAGTGTTCCA 58.901 45.000 9.73 0.00 0.00 3.53
1369 3889 3.936585 TTTTTGCGCTGAGTGTTCC 57.063 47.368 9.73 0.00 0.00 3.62
1384 3904 9.904198 TCCATTCCATTCTTTTCTTTTCTTTTT 57.096 25.926 0.00 0.00 0.00 1.94
1385 3905 9.904198 TTCCATTCCATTCTTTTCTTTTCTTTT 57.096 25.926 0.00 0.00 0.00 2.27
1386 3906 9.330063 GTTCCATTCCATTCTTTTCTTTTCTTT 57.670 29.630 0.00 0.00 0.00 2.52
1387 3907 8.485392 TGTTCCATTCCATTCTTTTCTTTTCTT 58.515 29.630 0.00 0.00 0.00 2.52
1388 3908 7.928167 GTGTTCCATTCCATTCTTTTCTTTTCT 59.072 33.333 0.00 0.00 0.00 2.52
1389 3909 7.710475 TGTGTTCCATTCCATTCTTTTCTTTTC 59.290 33.333 0.00 0.00 0.00 2.29
1390 3910 7.563906 TGTGTTCCATTCCATTCTTTTCTTTT 58.436 30.769 0.00 0.00 0.00 2.27
1391 3911 7.123355 TGTGTTCCATTCCATTCTTTTCTTT 57.877 32.000 0.00 0.00 0.00 2.52
1394 3914 4.925646 GCTGTGTTCCATTCCATTCTTTTC 59.074 41.667 0.00 0.00 0.00 2.29
1397 3917 3.499338 TGCTGTGTTCCATTCCATTCTT 58.501 40.909 0.00 0.00 0.00 2.52
1398 3918 3.159213 TGCTGTGTTCCATTCCATTCT 57.841 42.857 0.00 0.00 0.00 2.40
1399 3919 3.698040 AGATGCTGTGTTCCATTCCATTC 59.302 43.478 0.00 0.00 0.00 2.67
1415 3940 7.558444 GCTTAGGTACTCCTACATATAGATGCT 59.442 40.741 0.00 0.00 44.96 3.79
1441 3975 3.126831 GACTGGAGTCAACTTGTGAGTG 58.873 50.000 1.75 0.00 44.18 3.51
1513 4166 7.396540 ACTGAAGAATTGAAAAGTCACTTGT 57.603 32.000 0.00 0.00 44.66 3.16
1514 4167 7.970061 TGAACTGAAGAATTGAAAAGTCACTTG 59.030 33.333 0.00 0.00 44.66 3.16
1515 4168 8.055279 TGAACTGAAGAATTGAAAAGTCACTT 57.945 30.769 0.00 0.00 44.66 3.16
1567 4908 6.103997 TCCGTCAAGATAAATCCTGTTGTAC 58.896 40.000 0.00 0.00 0.00 2.90
1571 4912 5.805728 ACTTCCGTCAAGATAAATCCTGTT 58.194 37.500 0.00 0.00 35.82 3.16
1594 4935 8.089115 TCGTCACACACATCACAAATTATTTA 57.911 30.769 0.00 0.00 0.00 1.40
1595 4936 6.964908 TCGTCACACACATCACAAATTATTT 58.035 32.000 0.00 0.00 0.00 1.40
1596 4937 6.552859 TCGTCACACACATCACAAATTATT 57.447 33.333 0.00 0.00 0.00 1.40
1597 4938 6.455513 CGATCGTCACACACATCACAAATTAT 60.456 38.462 7.03 0.00 0.00 1.28
1604 4945 1.977188 TCGATCGTCACACACATCAC 58.023 50.000 15.94 0.00 0.00 3.06
1606 4947 1.256376 GCATCGATCGTCACACACATC 59.744 52.381 15.94 0.00 0.00 3.06
1864 5259 5.006941 AGTTTGTTATTTTACAGTCGCGTGT 59.993 36.000 5.77 6.82 34.21 4.49
2029 5431 2.046700 CCCTTGGCGGCGAAGTTA 60.047 61.111 20.83 0.00 0.00 2.24
2080 5482 2.178876 ATTGTCCGATCGTGTGGCCA 62.179 55.000 15.09 0.00 0.00 5.36
2134 5536 1.443702 CGCGTCGATGTTGGTCTCA 60.444 57.895 6.48 0.00 0.00 3.27
2265 5667 1.352352 CCTTCTGGGACATCAGGTTGT 59.648 52.381 0.00 0.00 38.20 3.32
2608 6039 7.486407 AATGAAGCAAAGGGAAATACTTGAT 57.514 32.000 0.00 0.00 0.00 2.57
2629 6060 6.330004 TGTGCACTTGGGCATATAATAATG 57.670 37.500 19.41 0.00 46.92 1.90
2680 6112 5.063880 AGCTTGTAGAATTCGTTGGAAACT 58.936 37.500 0.00 0.00 46.99 2.66
2687 6119 6.619801 AGACAAAAGCTTGTAGAATTCGTT 57.380 33.333 0.00 0.00 45.98 3.85
3003 7681 2.279120 CGGCTTGCTAGAGCGGAG 60.279 66.667 0.00 0.00 43.33 4.63
3006 7684 1.587613 GACTCGGCTTGCTAGAGCG 60.588 63.158 14.58 1.51 45.83 5.03
3012 7690 4.400961 GGGCTGACTCGGCTTGCT 62.401 66.667 9.76 0.00 35.82 3.91
3055 7733 4.123545 ATAGGTGGTTGCGGGGCC 62.124 66.667 0.00 0.00 0.00 5.80
3081 7759 2.362369 CGGTGGGAGGATGCTCTGT 61.362 63.158 14.40 0.00 0.00 3.41
3128 7806 0.600255 AGTTTCCGGCACTCGTCAAG 60.600 55.000 0.00 0.00 37.11 3.02
3152 7830 6.467723 GAGTGCTCGACAAAAATTCTCTTA 57.532 37.500 0.00 0.00 0.00 2.10
3169 7847 1.000955 CTGGTGACTTTACCGAGTGCT 59.999 52.381 0.00 0.00 43.87 4.40
3198 7876 2.218603 CGAGTGTTTTACCTGGCACTT 58.781 47.619 5.56 0.00 41.59 3.16
3314 7993 3.918253 TTCGGTCTGGCCCACATGC 62.918 63.158 0.00 0.00 0.00 4.06
3316 7995 1.918293 TCTTCGGTCTGGCCCACAT 60.918 57.895 0.00 0.00 0.00 3.21
3372 8051 6.268387 TCATTCCTTCTTGGCTTTCTTGAAAT 59.732 34.615 0.00 0.00 35.26 2.17
3375 8054 4.728772 TCATTCCTTCTTGGCTTTCTTGA 58.271 39.130 0.00 0.00 35.26 3.02
3401 8080 1.187567 GGGGTGCATGCCAAGTCTTT 61.188 55.000 16.68 0.00 0.00 2.52
3437 8116 1.072331 CTAGGGGCAAATACGCTGGAT 59.928 52.381 0.00 0.00 32.34 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.