AutoCloner

Multiple sequence alignment - TraesCS2B01G125600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G125600	chr2B	100.000	3273	0	0	1	3273	93884049	93880777	0.000000e+00	6045
1	TraesCS2B01G125600	chr2B	99.898	1965	2	0	511	2475	93805502	93803538	0.000000e+00	3618
2	TraesCS2B01G125600	chr2B	90.921	793	59	5	2494	3273	695895192	695894400	0.000000e+00	1053
3	TraesCS2B01G125600	chr2B	90.542	793	61	6	2494	3273	695931894	695931103	0.000000e+00	1037
4	TraesCS2B01G125600	chr2B	91.776	608	49	1	2494	3101	695968009	695967403	0.000000e+00	845
5	TraesCS2B01G125600	chr2B	92.533	375	11	6	89	455	93805859	93805494	3.740000e-144	521
6	TraesCS2B01G125600	chr2B	84.831	534	54	12	1882	2388	93711746	93711213	2.250000e-141	512
7	TraesCS2B01G125600	chr2B	85.271	387	55	2	1884	2269	93638537	93638152	6.580000e-107	398
8	TraesCS2B01G125600	chr2B	88.811	286	17	7	3001	3273	695967388	695967105	1.450000e-88	337
9	TraesCS2B01G125600	chr2B	90.952	210	19	0	1286	1495	93712667	93712458	1.920000e-72	283
10	TraesCS2B01G125600	chr2B	90.547	201	17	2	1294	1493	94089910	94089711	6.960000e-67	265
11	TraesCS2B01G125600	chr2B	84.959	246	30	6	1591	1830	93711999	93711755	3.260000e-60	243
12	TraesCS2B01G125600	chr2B	88.557	201	21	2	1294	1493	94099324	94099125	3.260000e-60	243
13	TraesCS2B01G125600	chr2A	89.162	1301	94	34	554	1830	60079864	60078587	0.000000e+00	1578
14	TraesCS2B01G125600	chr2A	78.624	1366	188	58	428	1768	60069897	60068611	0.000000e+00	809
15	TraesCS2B01G125600	chr2A	92.100	481	34	1	1872	2348	60078575	60078095	0.000000e+00	675
16	TraesCS2B01G125600	chr2A	83.019	795	83	26	2494	3272	720402618	720403376	0.000000e+00	673
17	TraesCS2B01G125600	chr2A	86.590	522	45	13	29	538	60093287	60092779	1.330000e-153	553
18	TraesCS2B01G125600	chr2A	83.973	599	67	17	1880	2451	60068522	60067926	6.170000e-152	547
19	TraesCS2B01G125600	chr2A	84.439	392	59	2	1884	2274	59873121	59872731	5.120000e-103	385
20	TraesCS2B01G125600	chr2A	83.376	391	65	0	1884	2274	59933148	59932758	2.400000e-96	363
21	TraesCS2B01G125600	chr2A	89.055	201	20	2	1294	1493	60760252	60760053	7.010000e-62	248
22	TraesCS2B01G125600	chr2A	84.390	205	30	2	1007	1210	59943412	59943209	1.990000e-47	200
23	TraesCS2B01G125600	chr2A	83.902	205	31	2	1007	1210	59880740	59880537	9.270000e-46	195
24	TraesCS2B01G125600	chr2D	87.972	1297	87	18	1205	2475	60079148	60077895	0.000000e+00	1467
25	TraesCS2B01G125600	chr2D	91.249	857	52	17	380	1225	60080007	60079163	0.000000e+00	1146
26	TraesCS2B01G125600	chr2D	78.457	1063	130	52	805	1830	60065533	60064533	1.300000e-168	603
27	TraesCS2B01G125600	chr2D	85.522	594	61	13	1880	2452	60064527	60063938	6.040000e-167	597
28	TraesCS2B01G125600	chr2D	92.918	353	11	6	29	377	60080768	60080426	4.880000e-138	501
29	TraesCS2B01G125600	chr6B	92.443	794	44	8	2494	3273	58307073	58307864	0.000000e+00	1120
30	TraesCS2B01G125600	chr3D	89.798	794	64	11	2494	3272	460259434	460260225	0.000000e+00	1002
31	TraesCS2B01G125600	chr3D	88.761	783	73	10	2494	3273	21379497	21378727	0.000000e+00	944
32	TraesCS2B01G125600	chr5B	90.053	754	57	10	2535	3273	284831721	284830971	0.000000e+00	961
33	TraesCS2B01G125600	chr1B	93.027	631	44	0	2494	3124	389319340	389319970	0.000000e+00	922
34	TraesCS2B01G125600	chr1B	89.414	529	43	5	2749	3264	39669363	39669891	0.000000e+00	654
35	TraesCS2B01G125600	chr7D	87.995	783	81	10	2494	3273	123213332	123214104	0.000000e+00	913
36	TraesCS2B01G125600	chr7D	92.089	632	42	4	2494	3124	83324775	83325399	0.000000e+00	883
37	TraesCS2B01G125600	chr7A	87.137	793	84	9	2494	3272	78081037	78081825	0.000000e+00	883

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G125600	chr2B	93880777	93884049	3272	True	6045.0	6045	100.0000	1	3273	1	chr2B.!!$R2	3272
1	TraesCS2B01G125600	chr2B	93803538	93805859	2321	True	2069.5	3618	96.2155	89	2475	2	chr2B.!!$R8	2386
2	TraesCS2B01G125600	chr2B	695894400	695895192	792	True	1053.0	1053	90.9210	2494	3273	1	chr2B.!!$R5	779
3	TraesCS2B01G125600	chr2B	695931103	695931894	791	True	1037.0	1037	90.5420	2494	3273	1	chr2B.!!$R6	779
4	TraesCS2B01G125600	chr2B	695967105	695968009	904	True	591.0	845	90.2935	2494	3273	2	chr2B.!!$R9	779
5	TraesCS2B01G125600	chr2B	93711213	93712667	1454	True	346.0	512	86.9140	1286	2388	3	chr2B.!!$R7	1102
6	TraesCS2B01G125600	chr2A	60078095	60079864	1769	True	1126.5	1578	90.6310	554	2348	2	chr2A.!!$R8	1794
7	TraesCS2B01G125600	chr2A	60067926	60069897	1971	True	678.0	809	81.2985	428	2451	2	chr2A.!!$R7	2023
8	TraesCS2B01G125600	chr2A	720402618	720403376	758	False	673.0	673	83.0190	2494	3272	1	chr2A.!!$F1	778
9	TraesCS2B01G125600	chr2A	60092779	60093287	508	True	553.0	553	86.5900	29	538	1	chr2A.!!$R5	509
10	TraesCS2B01G125600	chr2D	60077895	60080768	2873	True	1038.0	1467	90.7130	29	2475	3	chr2D.!!$R2	2446
11	TraesCS2B01G125600	chr2D	60063938	60065533	1595	True	600.0	603	81.9895	805	2452	2	chr2D.!!$R1	1647
12	TraesCS2B01G125600	chr6B	58307073	58307864	791	False	1120.0	1120	92.4430	2494	3273	1	chr6B.!!$F1	779
13	TraesCS2B01G125600	chr3D	460259434	460260225	791	False	1002.0	1002	89.7980	2494	3272	1	chr3D.!!$F1	778
14	TraesCS2B01G125600	chr3D	21378727	21379497	770	True	944.0	944	88.7610	2494	3273	1	chr3D.!!$R1	779
15	TraesCS2B01G125600	chr5B	284830971	284831721	750	True	961.0	961	90.0530	2535	3273	1	chr5B.!!$R1	738
16	TraesCS2B01G125600	chr1B	389319340	389319970	630	False	922.0	922	93.0270	2494	3124	1	chr1B.!!$F2	630
17	TraesCS2B01G125600	chr1B	39669363	39669891	528	False	654.0	654	89.4140	2749	3264	1	chr1B.!!$F1	515
18	TraesCS2B01G125600	chr7D	123213332	123214104	772	False	913.0	913	87.9950	2494	3273	1	chr7D.!!$F2	779
19	TraesCS2B01G125600	chr7D	83324775	83325399	624	False	883.0	883	92.0890	2494	3124	1	chr7D.!!$F1	630
20	TraesCS2B01G125600	chr7A	78081037	78081825	788	False	883.0	883	87.1370	2494	3272	1	chr7A.!!$F1	778

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
27	28	0.16747	TCGTCCGCAGAGTAGTTTCG	59.833	55.0	0.0	0.0	0.0	3.46	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2482	3447	6.016693	TCACAAGTTCGAATCTATTTTTGCCA	60.017	34.615	0.0	0.0	0.0	4.92	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	3.538841	GTCAACTGTCGTCCGCAG	58.461	61.111	8.76	8.76	39.67	5.18
18	19	1.007734	GTCAACTGTCGTCCGCAGA	60.008	57.895	14.76	0.00	37.40	4.26
19	20	1.004277	GTCAACTGTCGTCCGCAGAG	61.004	60.000	14.76	8.82	37.40	3.35
20	21	1.007271	CAACTGTCGTCCGCAGAGT	60.007	57.895	14.76	2.04	37.40	3.24
21	22	0.240145	CAACTGTCGTCCGCAGAGTA	59.760	55.000	14.76	0.00	37.40	2.59
22	23	0.522180	AACTGTCGTCCGCAGAGTAG	59.478	55.000	14.76	0.00	37.40	2.57
23	24	0.605860	ACTGTCGTCCGCAGAGTAGT	60.606	55.000	14.76	0.00	37.40	2.73
24	25	0.522180	CTGTCGTCCGCAGAGTAGTT	59.478	55.000	5.56	0.00	36.12	2.24
25	26	0.956633	TGTCGTCCGCAGAGTAGTTT	59.043	50.000	0.00	0.00	0.00	2.66
26	27	1.068748	TGTCGTCCGCAGAGTAGTTTC	60.069	52.381	0.00	0.00	0.00	2.78
27	28	0.167470	TCGTCCGCAGAGTAGTTTCG	59.833	55.000	0.00	0.00	0.00	3.46
46	47	3.234353	TCGCCATGAGAATGAGATACCT	58.766	45.455	0.00	0.00	0.00	3.08
57	60	8.731605	TGAGAATGAGATACCTTATCGTATGTC	58.268	37.037	0.00	0.00	38.73	3.06
194	201	4.320023	TGCGAAATTTACTGCCTGAAGTA	58.680	39.130	6.97	0.00	0.00	2.24
238	245	3.821033	GCACCTTTTCCAGTCTGTATTGT	59.179	43.478	0.00	0.00	0.00	2.71
239	246	4.320494	GCACCTTTTCCAGTCTGTATTGTG	60.320	45.833	0.00	0.48	0.00	3.33
325	332	7.997773	TCTGGACCATATGTACTATACTCAC	57.002	40.000	1.24	0.00	0.00	3.51
326	333	6.653740	TCTGGACCATATGTACTATACTCACG	59.346	42.308	1.24	0.00	0.00	4.35
327	334	6.301486	TGGACCATATGTACTATACTCACGT	58.699	40.000	1.24	0.00	0.00	4.49
328	335	7.452562	TGGACCATATGTACTATACTCACGTA	58.547	38.462	1.24	0.00	0.00	3.57
329	336	7.605309	TGGACCATATGTACTATACTCACGTAG	59.395	40.741	1.24	0.00	0.00	3.51
423	846	9.048446	CAGTTGTTGATTTTGAAAATGAGGATT	57.952	29.630	8.03	0.00	0.00	3.01
470	905	2.276201	CACGTTCAGAGACAAACCACA	58.724	47.619	0.00	0.00	0.00	4.17
471	906	2.872245	CACGTTCAGAGACAAACCACAT	59.128	45.455	0.00	0.00	0.00	3.21
472	907	2.872245	ACGTTCAGAGACAAACCACATG	59.128	45.455	0.00	0.00	0.00	3.21
473	908	2.872245	CGTTCAGAGACAAACCACATGT	59.128	45.455	0.00	0.00	0.00	3.21
474	909	3.059597	CGTTCAGAGACAAACCACATGTC	60.060	47.826	0.00	0.00	45.94	3.06
2475	3440	5.707931	AGTATGTCATACTGCGAGATGATG	58.292	41.667	22.14	0.00	44.07	3.07
2476	3441	4.861102	ATGTCATACTGCGAGATGATGA	57.139	40.909	0.00	0.00	34.69	2.92
2477	3442	4.654091	TGTCATACTGCGAGATGATGAA	57.346	40.909	0.00	0.00	34.69	2.57
2478	3443	5.009854	TGTCATACTGCGAGATGATGAAA	57.990	39.130	0.00	0.00	34.69	2.69
2479	3444	5.418676	TGTCATACTGCGAGATGATGAAAA	58.581	37.500	0.00	0.00	34.69	2.29
2480	3445	5.874261	TGTCATACTGCGAGATGATGAAAAA	59.126	36.000	0.00	0.00	34.69	1.94
2544	3509	1.153529	ACACACGTCGCCAACAGAA	60.154	52.632	0.00	0.00	0.00	3.02
2545	3510	0.741574	ACACACGTCGCCAACAGAAA	60.742	50.000	0.00	0.00	0.00	2.52
2555	3520	1.464997	GCCAACAGAAAAGACTAGCGG	59.535	52.381	0.00	0.00	0.00	5.52
2589	3554	2.228582	TGCAGCGCATGTGTTAAAGAAT	59.771	40.909	11.47	0.00	31.71	2.40
2606	3571	4.749245	AGAATTAAACCTGACTTGTGCG	57.251	40.909	0.00	0.00	0.00	5.34
2614	3579	0.668706	CTGACTTGTGCGCTGTAGCT	60.669	55.000	9.73	0.00	39.32	3.32
2619	3584	1.798223	CTTGTGCGCTGTAGCTAACAA	59.202	47.619	9.73	15.66	39.78	2.83
2720	3686	5.685511	TCTTTAGAAAAGTGCGCACATTTTC	59.314	36.000	37.52	37.52	34.92	2.29
2728	3694	2.339400	GTGCGCACATTTTCTGAATTCG	59.661	45.455	34.52	0.00	0.00	3.34
2872	3840	5.066968	ACAAATTTGAAACCGTGTGAACT	57.933	34.783	24.64	0.00	0.00	3.01
3038	4121	7.628769	ATTCCAAACAAAAATTCAAACAGCT	57.371	28.000	0.00	0.00	0.00	4.24
3124	4208	9.308318	ACACAAGTTTATAACCACAAACATTTC	57.692	29.630	0.00	0.00	37.16	2.17
3196	4295	9.875675	TTGAAAATGCGAATAATTTTTGGAAAG	57.124	25.926	0.00	0.00	37.35	2.62
3205	4305	7.406799	AATAATTTTTGGAAAGCACGAACAG	57.593	32.000	0.00	0.00	0.00	3.16

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	1.004277	CTCTGCGGACGACAGTTGAC	61.004	60.000	13.03	0.00	36.50	3.18
1	2	1.285950	CTCTGCGGACGACAGTTGA	59.714	57.895	13.03	0.00	36.50	3.18
2	3	0.240145	TACTCTGCGGACGACAGTTG	59.760	55.000	13.03	10.60	36.50	3.16
3	4	0.522180	CTACTCTGCGGACGACAGTT	59.478	55.000	13.03	6.95	36.50	3.16
4	5	0.605860	ACTACTCTGCGGACGACAGT	60.606	55.000	13.03	0.00	36.50	3.55
5	6	0.522180	AACTACTCTGCGGACGACAG	59.478	55.000	0.00	2.98	36.44	3.51
6	7	0.956633	AAACTACTCTGCGGACGACA	59.043	50.000	0.00	0.00	0.00	4.35
7	8	1.615502	GAAACTACTCTGCGGACGAC	58.384	55.000	0.00	0.00	0.00	4.34
8	9	0.167470	CGAAACTACTCTGCGGACGA	59.833	55.000	0.00	0.00	0.00	4.20
9	10	1.403972	GCGAAACTACTCTGCGGACG	61.404	60.000	0.00	0.00	0.00	4.79
10	11	1.077089	GGCGAAACTACTCTGCGGAC	61.077	60.000	0.00	0.00	0.00	4.79
11	12	1.214589	GGCGAAACTACTCTGCGGA	59.785	57.895	0.00	0.00	0.00	5.54
12	13	0.460284	ATGGCGAAACTACTCTGCGG	60.460	55.000	0.00	0.00	0.00	5.69
13	14	0.647410	CATGGCGAAACTACTCTGCG	59.353	55.000	0.00	0.00	0.00	5.18
14	15	1.929836	CTCATGGCGAAACTACTCTGC	59.070	52.381	0.00	0.00	0.00	4.26
15	16	3.510388	TCTCATGGCGAAACTACTCTG	57.490	47.619	0.00	0.00	0.00	3.35
16	17	4.160439	TCATTCTCATGGCGAAACTACTCT	59.840	41.667	0.00	0.00	0.00	3.24
17	18	4.433615	TCATTCTCATGGCGAAACTACTC	58.566	43.478	0.00	0.00	0.00	2.59
18	19	4.160439	TCTCATTCTCATGGCGAAACTACT	59.840	41.667	0.00	0.00	0.00	2.57
19	20	4.433615	TCTCATTCTCATGGCGAAACTAC	58.566	43.478	0.00	0.00	0.00	2.73
20	21	4.736126	TCTCATTCTCATGGCGAAACTA	57.264	40.909	0.00	0.00	0.00	2.24
21	22	3.616956	TCTCATTCTCATGGCGAAACT	57.383	42.857	0.00	0.00	0.00	2.66
22	23	4.212214	GGTATCTCATTCTCATGGCGAAAC	59.788	45.833	0.00	0.00	0.00	2.78
23	24	4.101585	AGGTATCTCATTCTCATGGCGAAA	59.898	41.667	0.00	0.00	0.00	3.46
24	25	3.643320	AGGTATCTCATTCTCATGGCGAA	59.357	43.478	0.00	0.00	0.00	4.70
25	26	3.234353	AGGTATCTCATTCTCATGGCGA	58.766	45.455	0.00	0.00	0.00	5.54
26	27	3.674528	AGGTATCTCATTCTCATGGCG	57.325	47.619	0.00	0.00	0.00	5.69
27	28	5.809562	CGATAAGGTATCTCATTCTCATGGC	59.190	44.000	0.00	0.00	33.01	4.40
46	47	8.822855	GTGTCATGTTAAATGGACATACGATAA	58.177	33.333	7.38	0.00	41.73	1.75
57	60	4.156556	CCACTGGAGTGTCATGTTAAATGG	59.843	45.833	6.06	0.00	44.21	3.16
87	92	7.180408	ACAGTATGGTCCTGAACTACAGTATTT	59.820	37.037	0.00	0.00	42.47	1.40
238	245	4.045781	ATGGACGCATGCACCCCA	62.046	61.111	19.57	20.06	0.00	4.96
239	246	3.520862	CATGGACGCATGCACCCC	61.521	66.667	19.57	15.04	0.00	4.95
326	333	4.096382	TCCCACTAATTCGGACGTAACTAC	59.904	45.833	0.00	0.00	0.00	2.73
327	334	4.269183	TCCCACTAATTCGGACGTAACTA	58.731	43.478	0.00	0.00	0.00	2.24
328	335	3.091545	TCCCACTAATTCGGACGTAACT	58.908	45.455	0.00	0.00	0.00	2.24
329	336	3.129287	TCTCCCACTAATTCGGACGTAAC	59.871	47.826	0.00	0.00	0.00	2.50
423	846	5.417580	GCAGTTTAATCCATGGGTCAGTTTA	59.582	40.000	13.02	0.00	0.00	2.01
425	848	3.763897	GCAGTTTAATCCATGGGTCAGTT	59.236	43.478	13.02	2.48	0.00	3.16
470	905	5.437060	GAATACTTACCCCACATGTGACAT	58.563	41.667	27.46	13.36	0.00	3.06
471	906	4.621983	CGAATACTTACCCCACATGTGACA	60.622	45.833	27.46	6.01	0.00	3.58
472	907	3.869246	CGAATACTTACCCCACATGTGAC	59.131	47.826	27.46	3.08	0.00	3.67
473	908	3.118555	CCGAATACTTACCCCACATGTGA	60.119	47.826	27.46	3.91	0.00	3.58
474	909	3.202906	CCGAATACTTACCCCACATGTG	58.797	50.000	19.31	19.31	0.00	3.21
475	910	2.420967	GCCGAATACTTACCCCACATGT	60.421	50.000	0.00	0.00	0.00	3.21
476	911	2.218603	GCCGAATACTTACCCCACATG	58.781	52.381	0.00	0.00	0.00	3.21
2477	3442	8.831715	AGTTCGAATCTATTTTTGCCATTTTT	57.168	26.923	0.00	0.00	0.00	1.94
2478	3443	8.711457	CAAGTTCGAATCTATTTTTGCCATTTT	58.289	29.630	0.00	0.00	0.00	1.82
2479	3444	7.872483	ACAAGTTCGAATCTATTTTTGCCATTT	59.128	29.630	0.00	0.00	0.00	2.32
2480	3445	7.329226	CACAAGTTCGAATCTATTTTTGCCATT	59.671	33.333	0.00	0.00	0.00	3.16
2481	3446	6.808212	CACAAGTTCGAATCTATTTTTGCCAT	59.192	34.615	0.00	0.00	0.00	4.40
2482	3447	6.016693	TCACAAGTTCGAATCTATTTTTGCCA	60.017	34.615	0.00	0.00	0.00	4.92
2483	3448	6.305638	GTCACAAGTTCGAATCTATTTTTGCC	59.694	38.462	0.00	0.00	0.00	4.52
2484	3449	6.305638	GGTCACAAGTTCGAATCTATTTTTGC	59.694	38.462	0.00	0.00	0.00	3.68
2485	3450	7.359595	TGGTCACAAGTTCGAATCTATTTTTG	58.640	34.615	0.00	1.32	0.00	2.44
2486	3451	7.504924	TGGTCACAAGTTCGAATCTATTTTT	57.495	32.000	0.00	0.00	0.00	1.94
2487	3452	7.504924	TTGGTCACAAGTTCGAATCTATTTT	57.495	32.000	0.00	0.00	31.73	1.82
2544	3509	4.612264	TTAACCAACTCCGCTAGTCTTT	57.388	40.909	0.00	0.00	37.50	2.52
2545	3510	4.040095	ACTTTAACCAACTCCGCTAGTCTT	59.960	41.667	0.00	0.00	37.50	3.01
2555	3520	1.663161	GCGCTGCACTTTAACCAACTC	60.663	52.381	0.00	0.00	0.00	3.01
2589	3554	1.601903	CAGCGCACAAGTCAGGTTTAA	59.398	47.619	11.47	0.00	0.00	1.52
2606	3571	5.629079	AATTGGTTCTTGTTAGCTACAGC	57.371	39.130	0.00	0.00	38.19	4.40
2614	3579	6.058833	TCACTGCAGTAATTGGTTCTTGTTA	58.941	36.000	21.20	0.00	0.00	2.41
2619	3584	3.821033	GGTTCACTGCAGTAATTGGTTCT	59.179	43.478	21.20	0.00	0.00	3.01
2702	3668	3.371168	TCAGAAAATGTGCGCACTTTTC	58.629	40.909	37.52	37.52	37.59	2.29
3011	3980	9.384682	GCTGTTTGAATTTTTGTTTGGAATATG	57.615	29.630	0.00	0.00	0.00	1.78
3191	4290	2.031191	TCGAAAACTGTTCGTGCTTTCC	59.969	45.455	8.19	0.00	42.09	3.13
3196	4295	4.317069	CCAATTTTCGAAAACTGTTCGTGC	60.317	41.667	25.21	0.00	42.09	5.34
3205	4305	6.904543	CACATTTGTTCCCAATTTTCGAAAAC	59.095	34.615	24.68	11.98	0.00	2.43

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.