AutoCloner

Multiple sequence alignment - TraesCS2B01G125500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G125500	chr2B	100.000	3273	0	0	1	3273	93806012	93802740	0.000000e+00	6045.0
1	TraesCS2B01G125500	chr2B	99.898	1965	2	0	511	2475	93883539	93881575	0.000000e+00	3618.0
2	TraesCS2B01G125500	chr2B	92.533	375	11	6	154	519	93883961	93883595	3.740000e-144	521.0
3	TraesCS2B01G125500	chr2B	84.831	534	54	12	1882	2388	93711746	93711213	2.250000e-141	512.0
4	TraesCS2B01G125500	chr2B	85.271	387	55	2	1884	2269	93638537	93638152	6.580000e-107	398.0
5	TraesCS2B01G125500	chr2B	90.952	210	19	0	1286	1495	93712667	93712458	1.920000e-72	283.0
6	TraesCS2B01G125500	chr2B	90.547	201	17	2	1294	1493	94089910	94089711	6.960000e-67	265.0
7	TraesCS2B01G125500	chr2B	84.959	246	30	6	1591	1830	93711999	93711755	3.260000e-60	243.0
8	TraesCS2B01G125500	chr2B	88.557	201	21	2	1294	1493	94099324	94099125	3.260000e-60	243.0
9	TraesCS2B01G125500	chr2B	89.103	156	3	7	1	150	93884312	93884165	7.210000e-42	182.0
10	TraesCS2B01G125500	chr2A	89.162	1301	94	34	554	1830	60079864	60078587	0.000000e+00	1578.0
11	TraesCS2B01G125500	chr2A	81.622	974	136	27	805	1768	60069551	60068611	0.000000e+00	767.0
12	TraesCS2B01G125500	chr2A	92.100	481	34	1	1872	2348	60078575	60078095	0.000000e+00	675.0
13	TraesCS2B01G125500	chr2A	88.007	542	35	19	1	519	60093395	60092861	6.000000e-172	614.0
14	TraesCS2B01G125500	chr2A	83.973	599	67	17	1880	2451	60068522	60067926	6.170000e-152	547.0
15	TraesCS2B01G125500	chr2A	85.481	489	58	6	2784	3271	60074693	60074217	6.310000e-137	497.0
16	TraesCS2B01G125500	chr2A	84.439	392	59	2	1884	2274	59873121	59872731	5.120000e-103	385.0
17	TraesCS2B01G125500	chr2A	83.376	391	65	0	1884	2274	59933148	59932758	2.400000e-96	363.0
18	TraesCS2B01G125500	chr2A	89.055	201	20	2	1294	1493	60760252	60760053	7.010000e-62	248.0
19	TraesCS2B01G125500	chr2A	84.390	205	30	2	1007	1210	59943412	59943209	1.990000e-47	200.0
20	TraesCS2B01G125500	chr2A	83.902	205	31	2	1007	1210	59880740	59880537	9.270000e-46	195.0
21	TraesCS2B01G125500	chr2A	89.116	147	14	2	2504	2648	60077949	60077803	7.210000e-42	182.0
22	TraesCS2B01G125500	chr2D	87.991	1299	87	18	1205	2477	60079148	60077893	0.000000e+00	1471.0
23	TraesCS2B01G125500	chr2D	90.694	720	51	13	511	1225	60079871	60079163	0.000000e+00	944.0
24	TraesCS2B01G125500	chr2D	78.457	1063	130	52	805	1830	60065533	60064533	1.300000e-168	603.0
25	TraesCS2B01G125500	chr2D	85.522	594	61	13	1880	2452	60064527	60063938	6.040000e-167	597.0
26	TraesCS2B01G125500	chr2D	89.845	453	15	16	10	435	60080874	60080426	1.330000e-153	553.0
27	TraesCS2B01G125500	chr2D	84.081	446	51	9	2572	3015	60074754	60074327	2.350000e-111	412.0
28	TraesCS2B01G125500	chr2D	84.081	446	51	9	2572	3015	60075472	60075045	2.350000e-111	412.0
29	TraesCS2B01G125500	chr4D	80.870	115	22	0	2567	2681	456052681	456052567	1.250000e-14	91.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G125500	chr2B	93802740	93806012	3272	True	6045.000000	6045	100.000000	1	3273	1	chr2B.!!$R2	3272
1	TraesCS2B01G125500	chr2B	93881575	93884312	2737	True	1440.333333	3618	93.844667	1	2475	3	chr2B.!!$R6	2474
2	TraesCS2B01G125500	chr2B	93711213	93712667	1454	True	346.000000	512	86.914000	1286	2388	3	chr2B.!!$R5	1102
3	TraesCS2B01G125500	chr2A	60074217	60079864	5647	True	733.000000	1578	88.964750	554	3271	4	chr2A.!!$R8	2717
4	TraesCS2B01G125500	chr2A	60067926	60069551	1625	True	657.000000	767	82.797500	805	2451	2	chr2A.!!$R7	1646
5	TraesCS2B01G125500	chr2A	60092861	60093395	534	True	614.000000	614	88.007000	1	519	1	chr2A.!!$R5	518
6	TraesCS2B01G125500	chr2D	60074327	60080874	6547	True	758.400000	1471	87.338400	10	3015	5	chr2D.!!$R2	3005
7	TraesCS2B01G125500	chr2D	60063938	60065533	1595	True	600.000000	603	81.989500	805	2452	2	chr2D.!!$R1	1647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
125	137	2.301296	CGCCCATGAGAATGAGATACCT	59.699	50.0	0.0	0.0	0.0	3.08	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2480	3703	2.219458	GATATCAGGGACGTCGAGTGA	58.781	52.381	9.92	12.07	0.0	3.41	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
29	33	7.211966	ACCAACACTGTACAAGTAGTAGTAG	57.788	40.000	0.00	0.00	36.83	2.57
30	34	6.774656	ACCAACACTGTACAAGTAGTAGTAGT	59.225	38.462	0.00	0.00	36.83	2.73
31	35	7.939039	ACCAACACTGTACAAGTAGTAGTAGTA	59.061	37.037	0.00	0.00	36.83	1.82
32	36	8.233190	CCAACACTGTACAAGTAGTAGTAGTAC	58.767	40.741	7.01	7.01	36.83	2.73
65	69	8.519799	TTTGACCAAGAGACAAATTTTAGAGT	57.480	30.769	0.00	0.00	0.00	3.24
125	137	2.301296	CGCCCATGAGAATGAGATACCT	59.699	50.000	0.00	0.00	0.00	3.08
126	138	3.511540	CGCCCATGAGAATGAGATACCTA	59.488	47.826	0.00	0.00	0.00	3.08
127	139	4.161189	CGCCCATGAGAATGAGATACCTAT	59.839	45.833	0.00	0.00	0.00	2.57
128	140	5.669477	GCCCATGAGAATGAGATACCTATC	58.331	45.833	0.00	0.00	0.00	2.08
129	141	5.680922	GCCCATGAGAATGAGATACCTATCG	60.681	48.000	0.00	0.00	37.76	2.92
130	142	5.420421	CCCATGAGAATGAGATACCTATCGT	59.580	44.000	0.00	0.00	37.76	3.73
131	143	6.603599	CCCATGAGAATGAGATACCTATCGTA	59.396	42.308	0.00	0.00	37.76	3.43
132	144	7.286546	CCCATGAGAATGAGATACCTATCGTAT	59.713	40.741	0.00	0.00	40.54	3.06
166	375	8.673711	TGCATTTAACATGAATACTGTAGTTCC	58.326	33.333	0.00	0.00	0.00	3.62
174	383	5.202765	TGAATACTGTAGTTCCGGACCATA	58.797	41.667	1.83	0.00	0.00	2.74
175	384	5.836898	TGAATACTGTAGTTCCGGACCATAT	59.163	40.000	1.83	0.00	0.00	1.78
252	461	3.998341	GTGGTCACCTGCGAAATTTACTA	59.002	43.478	0.00	0.00	0.00	1.82
509	1144	2.682856	CACCTGACCCATGGATTAAACG	59.317	50.000	15.22	0.00	0.00	3.60
2480	3703	5.069119	TGTCATACTGCGAGATGATAACCTT	59.931	40.000	0.00	0.00	34.69	3.50
2490	3713	3.695060	AGATGATAACCTTCACTCGACGT	59.305	43.478	0.00	0.00	0.00	4.34
2498	3721	2.014857	CTTCACTCGACGTCCCTGATA	58.985	52.381	10.58	0.00	0.00	2.15
2542	5075	2.245438	GACTGCCCACTAGACCTGGC	62.245	65.000	0.00	3.17	44.27	4.85
2565	5099	2.142357	GACAGCCCAGCCCGAAAAAC	62.142	60.000	0.00	0.00	0.00	2.43
2591	6840	1.304381	GGGTCAGGCTTGGCATTCA	60.304	57.895	1.81	0.00	0.00	2.57
2624	6873	1.956477	GCATCATTTTACAGCCCGGAT	59.044	47.619	0.73	0.00	0.00	4.18
2634	6883	2.262915	GCCCGGATGCTAGATCGG	59.737	66.667	0.73	0.05	41.90	4.18
2689	9949	2.356278	GGGCTTGCATGTGGAGGA	59.644	61.111	1.14	0.00	0.00	3.71
2700	9960	4.458989	TGCATGTGGAGGATAAAAACTGTC	59.541	41.667	0.00	0.00	0.00	3.51
2705	9965	4.753107	GTGGAGGATAAAAACTGTCGTTCA	59.247	41.667	0.00	0.00	31.66	3.18
2731	10023	1.079405	CTTTCGTGCTTCGGGCCTA	60.079	57.895	0.84	0.00	40.92	3.93
2738	10030	2.182842	GCTTCGGGCCTATGTGCAG	61.183	63.158	0.84	0.00	34.27	4.41
2739	10031	1.524621	CTTCGGGCCTATGTGCAGG	60.525	63.158	0.84	0.00	38.86	4.85
2745	10037	4.547859	CCTATGTGCAGGCCAGTC	57.452	61.111	5.01	0.00	0.00	3.51
2747	10039	0.254178	CCTATGTGCAGGCCAGTCTT	59.746	55.000	5.01	0.00	0.00	3.01
2748	10040	1.376543	CTATGTGCAGGCCAGTCTTG	58.623	55.000	5.01	0.00	0.00	3.02
2750	10042	2.674380	GTGCAGGCCAGTCTTGGG	60.674	66.667	5.01	0.00	45.16	4.12
2758	10050	3.160585	CAGTCTTGGGCCTGGACA	58.839	61.111	23.60	0.00	32.98	4.02
2759	10051	1.455849	CAGTCTTGGGCCTGGACAA	59.544	57.895	23.60	2.85	32.98	3.18
2760	10052	0.607489	CAGTCTTGGGCCTGGACAAG	60.607	60.000	23.60	19.47	44.09	3.16
2775	10067	5.654497	CTGGACAAGGATTTATTTTCAGGC	58.346	41.667	0.00	0.00	0.00	4.85
2776	10068	5.332743	TGGACAAGGATTTATTTTCAGGCT	58.667	37.500	0.00	0.00	0.00	4.58
2777	10069	5.779771	TGGACAAGGATTTATTTTCAGGCTT	59.220	36.000	0.00	0.00	0.00	4.35
2778	10070	6.071391	TGGACAAGGATTTATTTTCAGGCTTC	60.071	38.462	0.00	0.00	0.00	3.86
2779	10071	6.071391	GGACAAGGATTTATTTTCAGGCTTCA	60.071	38.462	0.00	0.00	0.00	3.02
2780	10072	6.928520	ACAAGGATTTATTTTCAGGCTTCAG	58.071	36.000	0.00	0.00	0.00	3.02
2781	10073	6.071165	ACAAGGATTTATTTTCAGGCTTCAGG	60.071	38.462	0.00	0.00	0.00	3.86
2782	10074	4.403752	AGGATTTATTTTCAGGCTTCAGGC	59.596	41.667	0.00	0.00	41.43	4.85
2803	10095	0.971386	ATGCTTGGGCTTGGAGTTTG	59.029	50.000	0.00	0.00	39.59	2.93
2830	10122	3.140506	CTTTTGCAAGCTGGGCCA	58.859	55.556	5.85	5.85	0.00	5.36
2837	10129	2.043604	GCAAGCTGGGCCAAAAACCT	62.044	55.000	8.04	0.00	0.00	3.50
2860	10152	1.451207	CGGCCCGACCAATGATCAA	60.451	57.895	0.00	0.00	39.03	2.57
2868	10160	4.094887	CCCGACCAATGATCAAGTTTACTG	59.905	45.833	0.00	0.00	0.00	2.74
2874	10166	5.105228	CCAATGATCAAGTTTACTGCCCATT	60.105	40.000	0.00	0.00	0.00	3.16
2879	10171	8.815565	TGATCAAGTTTACTGCCCATTATAAA	57.184	30.769	0.00	0.00	0.00	1.40
2904	10197	2.095161	GGATCGTCTCTACTAATGGGCG	60.095	54.545	0.00	0.00	0.00	6.13
2921	10214	1.616865	GGCGACACTATATGGCCTGTA	59.383	52.381	3.32	0.00	40.59	2.74
2922	10215	2.036733	GGCGACACTATATGGCCTGTAA	59.963	50.000	3.32	0.00	40.59	2.41
2937	10230	5.133221	GGCCTGTAATTGGTAAGACATCAT	58.867	41.667	0.00	0.00	0.00	2.45
2938	10231	5.009010	GGCCTGTAATTGGTAAGACATCATG	59.991	44.000	0.00	0.00	0.00	3.07
3028	10321	9.703892	ACATAGTGCAAATTGCTTAAAACATAA	57.296	25.926	19.34	0.00	45.31	1.90
3040	10333	9.534565	TTGCTTAAAACATAAGTGTAAATTGCA	57.465	25.926	0.00	0.00	37.67	4.08
3062	10355	4.644103	GCACATTGCACTCTATTCCAAT	57.356	40.909	0.00	0.00	44.26	3.16
3063	10356	4.357142	GCACATTGCACTCTATTCCAATG	58.643	43.478	9.81	9.81	46.03	2.82
3069	10362	7.537715	CATTGCACTCTATTCCAATGTAACAA	58.462	34.615	0.00	0.00	39.56	2.83
3083	10376	9.838339	TCCAATGTAACAATAAAAACACCATTT	57.162	25.926	0.00	0.00	0.00	2.32
3086	10379	9.838339	AATGTAACAATAAAAACACCATTTCCA	57.162	25.926	0.00	0.00	0.00	3.53
3089	10382	9.482627	GTAACAATAAAAACACCATTTCCATCA	57.517	29.630	0.00	0.00	0.00	3.07
3091	10384	8.970859	ACAATAAAAACACCATTTCCATCAAA	57.029	26.923	0.00	0.00	0.00	2.69
3149	10442	5.106396	GCCATCAATCTCATTAATCCCTTCG	60.106	44.000	0.00	0.00	0.00	3.79
3179	10472	4.066490	TGAAGTAAATGTGTACAACCCCG	58.934	43.478	0.00	0.00	0.00	5.73
3180	10473	3.062122	AGTAAATGTGTACAACCCCGG	57.938	47.619	0.00	0.00	0.00	5.73
3182	10475	1.238625	AAATGTGTACAACCCCGGCG	61.239	55.000	0.00	0.00	0.00	6.46
3204	10497	5.105310	GCGGTCTATAGGTCCATGTGAATAT	60.105	44.000	0.00	0.00	0.00	1.28
3223	10516	7.119846	GTGAATATTTATCCATGCCTAGGTCAC	59.880	40.741	11.31	7.10	0.00	3.67
3234	10527	0.248907	CTAGGTCACGTGTATGCCGG	60.249	60.000	16.51	0.00	0.00	6.13
3243	10536	1.069090	TGTATGCCGGCCGAGATTC	59.931	57.895	30.73	15.67	0.00	2.52
3244	10537	1.069090	GTATGCCGGCCGAGATTCA	59.931	57.895	30.73	16.02	0.00	2.57
3247	10540	4.918201	GCCGGCCGAGATTCAGGG	62.918	72.222	30.73	7.40	0.00	4.45

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
65	69	0.666274	GATGTGCGTCAGTCGTCCAA	60.666	55.000	0.00	0.00	42.13	3.53
125	137	8.576936	TGTTAAATGCACATACGAATACGATA	57.423	30.769	0.00	0.00	42.66	2.92
126	138	7.471657	TGTTAAATGCACATACGAATACGAT	57.528	32.000	0.00	0.00	42.66	3.73
127	139	6.889019	TGTTAAATGCACATACGAATACGA	57.111	33.333	0.00	0.00	42.66	3.43
128	140	7.341446	TCATGTTAAATGCACATACGAATACG	58.659	34.615	0.00	0.00	37.89	3.06
129	141	9.663904	ATTCATGTTAAATGCACATACGAATAC	57.336	29.630	0.00	0.00	32.88	1.89
131	143	9.663904	GTATTCATGTTAAATGCACATACGAAT	57.336	29.630	0.00	0.00	34.29	3.34
132	144	8.888716	AGTATTCATGTTAAATGCACATACGAA	58.111	29.630	0.00	0.00	32.88	3.85
166	375	2.743938	GCACAGACAGTATATGGTCCG	58.256	52.381	3.83	0.00	34.58	4.79
174	383	1.398739	CTCGAGACGCACAGACAGTAT	59.601	52.381	6.58	0.00	0.00	2.12
175	384	0.796927	CTCGAGACGCACAGACAGTA	59.203	55.000	6.58	0.00	0.00	2.74
252	461	4.681978	GGCGCGTCCACTTCAGGT	62.682	66.667	8.43	0.00	34.01	4.00
2480	3703	2.219458	GATATCAGGGACGTCGAGTGA	58.781	52.381	9.92	12.07	0.00	3.41
2490	3713	2.172505	ACATTTGCACGGATATCAGGGA	59.827	45.455	9.50	0.00	0.00	4.20
2532	5064	1.513158	CTGTCCACGCCAGGTCTAG	59.487	63.158	0.00	0.00	0.00	2.43
2591	6840	1.578215	ATGATGCCCAAGACCAGCCT	61.578	55.000	0.00	0.00	0.00	4.58
2624	6873	1.686325	GAACCCAGCCCGATCTAGCA	61.686	60.000	6.60	0.00	0.00	3.49
2634	6883	3.978571	GAGAAGCCCGAACCCAGCC	62.979	68.421	0.00	0.00	0.00	4.85
2689	9949	3.482436	TGGCCTGAACGACAGTTTTTAT	58.518	40.909	3.32	0.00	44.40	1.40
2700	9960	2.680913	CGAAAGCCTGGCCTGAACG	61.681	63.158	16.57	10.65	0.00	3.95
2705	9965	3.497884	AAGCACGAAAGCCTGGCCT	62.498	57.895	16.57	0.00	34.23	5.19
2731	10023	1.303888	CCAAGACTGGCCTGCACAT	60.304	57.895	9.95	0.00	35.39	3.21
2741	10033	0.607489	CTTGTCCAGGCCCAAGACTG	60.607	60.000	12.66	0.00	40.36	3.51
2743	10035	1.303643	CCTTGTCCAGGCCCAAGAC	60.304	63.158	18.01	14.06	40.36	3.01
2744	10036	0.846427	ATCCTTGTCCAGGCCCAAGA	60.846	55.000	18.01	2.14	43.55	3.02
2745	10037	0.040204	AATCCTTGTCCAGGCCCAAG	59.960	55.000	11.38	11.38	43.55	3.61
2747	10039	1.377690	TAAATCCTTGTCCAGGCCCA	58.622	50.000	0.00	0.00	43.55	5.36
2748	10040	2.755952	ATAAATCCTTGTCCAGGCCC	57.244	50.000	0.00	0.00	43.55	5.80
2749	10041	4.466015	TGAAAATAAATCCTTGTCCAGGCC	59.534	41.667	0.00	0.00	43.55	5.19
2750	10042	5.394553	CCTGAAAATAAATCCTTGTCCAGGC	60.395	44.000	0.00	0.00	43.55	4.85
2751	10043	5.394553	GCCTGAAAATAAATCCTTGTCCAGG	60.395	44.000	0.00	0.00	45.64	4.45
2752	10044	5.420104	AGCCTGAAAATAAATCCTTGTCCAG	59.580	40.000	0.00	0.00	0.00	3.86
2753	10045	5.332743	AGCCTGAAAATAAATCCTTGTCCA	58.667	37.500	0.00	0.00	0.00	4.02
2754	10046	5.921962	AGCCTGAAAATAAATCCTTGTCC	57.078	39.130	0.00	0.00	0.00	4.02
2755	10047	6.924111	TGAAGCCTGAAAATAAATCCTTGTC	58.076	36.000	0.00	0.00	0.00	3.18
2756	10048	6.071165	CCTGAAGCCTGAAAATAAATCCTTGT	60.071	38.462	0.00	0.00	0.00	3.16
2757	10049	6.335777	CCTGAAGCCTGAAAATAAATCCTTG	58.664	40.000	0.00	0.00	0.00	3.61
2758	10050	5.105187	GCCTGAAGCCTGAAAATAAATCCTT	60.105	40.000	0.00	0.00	34.35	3.36
2759	10051	4.403752	GCCTGAAGCCTGAAAATAAATCCT	59.596	41.667	0.00	0.00	34.35	3.24
2760	10052	4.686972	GCCTGAAGCCTGAAAATAAATCC	58.313	43.478	0.00	0.00	34.35	3.01
2774	10066	2.718073	CCCAAGCATGGCCTGAAGC	61.718	63.158	3.32	2.39	46.09	3.86
2775	10067	2.718073	GCCCAAGCATGGCCTGAAG	61.718	63.158	3.32	0.00	46.09	3.02
2776	10068	2.681064	GCCCAAGCATGGCCTGAA	60.681	61.111	3.32	0.00	46.09	3.02
2803	10095	1.603931	GCTTGCAAAAGCCTGACCTTC	60.604	52.381	0.00	0.00	39.81	3.46
2841	10133	2.591715	GATCATTGGTCGGGCCGG	60.592	66.667	27.98	8.88	41.21	6.13
2856	10148	9.420118	TCATTTATAATGGGCAGTAAACTTGAT	57.580	29.630	0.00	0.00	0.00	2.57
2860	10152	7.582719	TCCTCATTTATAATGGGCAGTAAACT	58.417	34.615	0.00	0.00	0.00	2.66
2868	10160	5.491982	AGACGATCCTCATTTATAATGGGC	58.508	41.667	0.00	0.00	0.00	5.36
2879	10171	5.013547	CCCATTAGTAGAGACGATCCTCAT	58.986	45.833	0.00	0.00	35.68	2.90
2904	10197	5.621193	ACCAATTACAGGCCATATAGTGTC	58.379	41.667	5.01	0.00	0.00	3.67
2921	10214	6.094603	GCTTGACTCATGATGTCTTACCAATT	59.905	38.462	19.39	0.00	35.63	2.32
2922	10215	5.587844	GCTTGACTCATGATGTCTTACCAAT	59.412	40.000	19.39	0.00	35.63	3.16
2937	10230	4.261572	GCCAATTTACACTTGCTTGACTCA	60.262	41.667	0.00	0.00	0.00	3.41
2938	10231	4.022849	AGCCAATTTACACTTGCTTGACTC	60.023	41.667	0.00	0.00	0.00	3.36
3015	10308	9.190858	CTGCAATTTACACTTATGTTTTAAGCA	57.809	29.630	0.00	0.00	40.48	3.91
3028	10321	3.319755	GCAATGTGCTGCAATTTACACT	58.680	40.909	2.77	0.00	42.17	3.55
3029	10322	3.710437	GCAATGTGCTGCAATTTACAC	57.290	42.857	2.77	0.00	42.17	2.90
3040	10333	3.354948	TGGAATAGAGTGCAATGTGCT	57.645	42.857	0.00	0.00	45.31	4.40
3062	10355	9.482627	GATGGAAATGGTGTTTTTATTGTTACA	57.517	29.630	0.00	0.00	0.00	2.41
3063	10356	9.482627	TGATGGAAATGGTGTTTTTATTGTTAC	57.517	29.630	0.00	0.00	0.00	2.50
3101	10394	8.765219	GGCGATCTATAAATGTATAATGCGATT	58.235	33.333	0.00	0.00	0.00	3.34
3102	10395	7.926018	TGGCGATCTATAAATGTATAATGCGAT	59.074	33.333	0.00	0.00	0.00	4.58
3103	10396	7.262048	TGGCGATCTATAAATGTATAATGCGA	58.738	34.615	0.00	0.00	0.00	5.10
3104	10397	7.463469	TGGCGATCTATAAATGTATAATGCG	57.537	36.000	0.00	0.00	0.00	4.73
3105	10398	9.045223	TGATGGCGATCTATAAATGTATAATGC	57.955	33.333	10.25	0.00	0.00	3.56
3120	10413	5.879223	GGATTAATGAGATTGATGGCGATCT	59.121	40.000	10.25	0.00	45.88	2.75
3125	10418	5.106396	CGAAGGGATTAATGAGATTGATGGC	60.106	44.000	0.00	0.00	0.00	4.40
3149	10442	7.266922	TGTACACATTTACTTCAAAACCCTC	57.733	36.000	0.00	0.00	0.00	4.30
3156	10449	4.515944	CGGGGTTGTACACATTTACTTCAA	59.484	41.667	0.00	0.00	0.00	2.69
3158	10451	3.437741	CCGGGGTTGTACACATTTACTTC	59.562	47.826	0.00	0.00	0.00	3.01
3159	10452	3.414269	CCGGGGTTGTACACATTTACTT	58.586	45.455	0.00	0.00	0.00	2.24
3160	10453	2.876892	GCCGGGGTTGTACACATTTACT	60.877	50.000	2.18	0.00	0.00	2.24
3163	10456	1.238625	CGCCGGGGTTGTACACATTT	61.239	55.000	11.01	0.00	0.00	2.32
3164	10457	1.673009	CGCCGGGGTTGTACACATT	60.673	57.895	11.01	0.00	0.00	2.71
3179	10472	1.000955	CACATGGACCTATAGACCGCC	59.999	57.143	0.00	0.00	0.00	6.13
3180	10473	1.961394	TCACATGGACCTATAGACCGC	59.039	52.381	0.00	0.00	0.00	5.68
3204	10497	2.769663	ACGTGACCTAGGCATGGATAAA	59.230	45.455	21.81	0.00	0.00	1.40
3211	10504	1.202533	GCATACACGTGACCTAGGCAT	60.203	52.381	25.01	0.00	0.00	4.40
3223	10516	2.971428	AATCTCGGCCGGCATACACG	62.971	60.000	30.85	22.08	0.00	4.49
3234	10527	1.745264	CTCCTCCCTGAATCTCGGC	59.255	63.158	0.00	0.00	0.00	5.54

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.