Multiple sequence alignment - TraesCS2B01G125200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G125200 chr2B 100.000 4363 0 0 1 4363 93690529 93686167 0.000000e+00 8058.0
1 TraesCS2B01G125200 chr2B 86.082 1825 167 47 729 2487 93639722 93637919 0.000000e+00 1882.0
2 TraesCS2B01G125200 chr2B 98.754 963 11 1 3401 4363 1219243 1220204 0.000000e+00 1711.0
3 TraesCS2B01G125200 chr2B 98.231 961 17 0 3403 4363 335674294 335673334 0.000000e+00 1681.0
4 TraesCS2B01G125200 chr2B 86.175 1396 130 34 1126 2471 93139383 93138001 0.000000e+00 1450.0
5 TraesCS2B01G125200 chr2B 89.850 867 64 14 1675 2527 93446812 93445956 0.000000e+00 1092.0
6 TraesCS2B01G125200 chr2B 85.596 604 42 19 2539 3104 93636653 93636057 3.760000e-165 592.0
7 TraesCS2B01G125200 chr2B 82.383 579 72 18 1056 1609 93447407 93446834 1.100000e-130 477.0
8 TraesCS2B01G125200 chr2B 74.445 1127 234 42 1165 2247 94034324 94033208 1.860000e-118 436.0
9 TraesCS2B01G125200 chr2B 85.763 295 22 9 524 798 93140023 93139729 1.190000e-75 294.0
10 TraesCS2B01G125200 chr2B 87.578 161 17 2 903 1061 93139557 93139398 2.680000e-42 183.0
11 TraesCS2B01G125200 chr2B 91.339 127 10 1 729 855 93453087 93452962 5.800000e-39 172.0
12 TraesCS2B01G125200 chr2B 96.203 79 3 0 979 1057 93452773 93452695 3.540000e-26 130.0
13 TraesCS2B01G125200 chr2B 94.595 37 0 1 2487 2523 93636884 93636850 6.100000e-04 56.5
14 TraesCS2B01G125200 chr2D 88.207 2671 172 52 536 3104 60016796 60014167 0.000000e+00 3055.0
15 TraesCS2B01G125200 chr2D 86.389 1080 97 28 1430 2471 59731313 59730246 0.000000e+00 1134.0
16 TraesCS2B01G125200 chr2D 81.860 645 102 13 1694 2329 59658444 59659082 2.990000e-146 529.0
17 TraesCS2B01G125200 chr2D 90.517 232 22 0 1117 1348 59657859 59658090 1.520000e-79 307.0
18 TraesCS2B01G125200 chr2D 84.926 272 38 3 263 532 585675736 585675466 5.560000e-69 272.0
19 TraesCS2B01G125200 chr2D 87.129 202 26 0 1437 1638 59658163 59658364 3.390000e-56 230.0
20 TraesCS2B01G125200 chr2A 89.377 2024 145 38 533 2527 59934463 59932481 0.000000e+00 2483.0
21 TraesCS2B01G125200 chr2A 88.998 2045 142 45 525 2527 59874452 59872449 0.000000e+00 2453.0
22 TraesCS2B01G125200 chr2A 85.169 1598 153 44 932 2471 59728664 59727093 0.000000e+00 1561.0
23 TraesCS2B01G125200 chr2A 80.960 646 109 10 1692 2329 59587911 59588550 2.340000e-137 499.0
24 TraesCS2B01G125200 chr2A 87.004 277 32 4 524 798 59729227 59728953 4.240000e-80 309.0
25 TraesCS2B01G125200 chr2A 79.405 437 67 14 917 1348 59943626 59943208 1.990000e-73 287.0
26 TraesCS2B01G125200 chr2A 88.235 238 25 3 2867 3103 59871634 59871399 9.240000e-72 281.0
27 TraesCS2B01G125200 chr2A 88.235 238 25 3 2867 3103 59931660 59931425 9.240000e-72 281.0
28 TraesCS2B01G125200 chr2A 84.906 265 38 2 263 525 575349020 575349284 2.590000e-67 267.0
29 TraesCS2B01G125200 chr2A 88.889 153 17 0 88 240 59934636 59934484 5.760000e-44 189.0
30 TraesCS2B01G125200 chr2A 86.628 172 14 4 2539 2709 59872397 59872234 9.640000e-42 182.0
31 TraesCS2B01G125200 chr2A 84.971 173 16 5 2539 2709 59932431 59932267 2.700000e-37 167.0
32 TraesCS2B01G125200 chr6B 98.447 966 14 1 3398 4363 277051332 277052296 0.000000e+00 1700.0
33 TraesCS2B01G125200 chr1A 98.439 961 15 0 3403 4363 397172773 397173733 0.000000e+00 1692.0
34 TraesCS2B01G125200 chr1A 97.930 966 19 1 3398 4363 551777099 551776135 0.000000e+00 1672.0
35 TraesCS2B01G125200 chr1A 84.444 270 39 3 261 527 221818419 221818688 3.350000e-66 263.0
36 TraesCS2B01G125200 chr7B 98.340 964 15 1 3401 4363 173089893 173088930 0.000000e+00 1690.0
37 TraesCS2B01G125200 chr3A 98.335 961 16 0 3403 4363 456828102 456827142 0.000000e+00 1687.0
38 TraesCS2B01G125200 chr6A 98.231 961 16 1 3403 4363 39342891 39343850 0.000000e+00 1679.0
39 TraesCS2B01G125200 chr4B 97.932 967 19 1 3398 4363 89037195 89036229 0.000000e+00 1674.0
40 TraesCS2B01G125200 chr4B 100.000 39 0 0 3096 3134 44575748 44575710 6.050000e-09 73.1
41 TraesCS2B01G125200 chr4B 100.000 39 0 0 3096 3134 615827050 615827088 6.050000e-09 73.1
42 TraesCS2B01G125200 chr5D 86.312 263 34 2 265 525 377353955 377354217 7.140000e-73 285.0
43 TraesCS2B01G125200 chr3D 85.660 265 33 4 263 524 15953584 15953846 1.550000e-69 274.0
44 TraesCS2B01G125200 chr3D 85.019 267 38 2 263 527 500140408 500140142 2.000000e-68 270.0
45 TraesCS2B01G125200 chr3D 100.000 39 0 0 3096 3134 561716324 561716362 6.050000e-09 73.1
46 TraesCS2B01G125200 chr6D 85.283 265 37 2 263 525 411471658 411471922 5.560000e-69 272.0
47 TraesCS2B01G125200 chr4A 84.477 277 37 6 252 525 659211004 659211277 7.190000e-68 268.0
48 TraesCS2B01G125200 chr4A 85.227 264 36 3 263 524 739765719 739765457 7.190000e-68 268.0
49 TraesCS2B01G125200 chr1B 79.783 277 38 16 3140 3407 184106701 184106434 7.450000e-43 185.0
50 TraesCS2B01G125200 chr5B 97.436 39 1 0 3096 3134 87114238 87114276 2.820000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G125200 chr2B 93686167 93690529 4362 True 8058.000000 8058 100.000000 1 4363 1 chr2B.!!$R1 4362
1 TraesCS2B01G125200 chr2B 1219243 1220204 961 False 1711.000000 1711 98.754000 3401 4363 1 chr2B.!!$F1 962
2 TraesCS2B01G125200 chr2B 335673334 335674294 960 True 1681.000000 1681 98.231000 3403 4363 1 chr2B.!!$R3 960
3 TraesCS2B01G125200 chr2B 93636057 93639722 3665 True 843.500000 1882 88.757667 729 3104 3 chr2B.!!$R7 2375
4 TraesCS2B01G125200 chr2B 93445956 93447407 1451 True 784.500000 1092 86.116500 1056 2527 2 chr2B.!!$R5 1471
5 TraesCS2B01G125200 chr2B 93138001 93140023 2022 True 642.333333 1450 86.505333 524 2471 3 chr2B.!!$R4 1947
6 TraesCS2B01G125200 chr2B 94033208 94034324 1116 True 436.000000 436 74.445000 1165 2247 1 chr2B.!!$R2 1082
7 TraesCS2B01G125200 chr2D 60014167 60016796 2629 True 3055.000000 3055 88.207000 536 3104 1 chr2D.!!$R2 2568
8 TraesCS2B01G125200 chr2D 59730246 59731313 1067 True 1134.000000 1134 86.389000 1430 2471 1 chr2D.!!$R1 1041
9 TraesCS2B01G125200 chr2D 59657859 59659082 1223 False 355.333333 529 86.502000 1117 2329 3 chr2D.!!$F1 1212
10 TraesCS2B01G125200 chr2A 59871399 59874452 3053 True 972.000000 2453 87.953667 525 3103 3 chr2A.!!$R3 2578
11 TraesCS2B01G125200 chr2A 59727093 59729227 2134 True 935.000000 1561 86.086500 524 2471 2 chr2A.!!$R2 1947
12 TraesCS2B01G125200 chr2A 59931425 59934636 3211 True 780.000000 2483 87.868000 88 3103 4 chr2A.!!$R4 3015
13 TraesCS2B01G125200 chr2A 59587911 59588550 639 False 499.000000 499 80.960000 1692 2329 1 chr2A.!!$F1 637
14 TraesCS2B01G125200 chr6B 277051332 277052296 964 False 1700.000000 1700 98.447000 3398 4363 1 chr6B.!!$F1 965
15 TraesCS2B01G125200 chr1A 397172773 397173733 960 False 1692.000000 1692 98.439000 3403 4363 1 chr1A.!!$F2 960
16 TraesCS2B01G125200 chr1A 551776135 551777099 964 True 1672.000000 1672 97.930000 3398 4363 1 chr1A.!!$R1 965
17 TraesCS2B01G125200 chr7B 173088930 173089893 963 True 1690.000000 1690 98.340000 3401 4363 1 chr7B.!!$R1 962
18 TraesCS2B01G125200 chr3A 456827142 456828102 960 True 1687.000000 1687 98.335000 3403 4363 1 chr3A.!!$R1 960
19 TraesCS2B01G125200 chr6A 39342891 39343850 959 False 1679.000000 1679 98.231000 3403 4363 1 chr6A.!!$F1 960
20 TraesCS2B01G125200 chr4B 89036229 89037195 966 True 1674.000000 1674 97.932000 3398 4363 1 chr4B.!!$R2 965

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
255 256 0.036388 TAAGGCTCAACCGCTCAAGG 60.036 55.0 0.00 0.00 46.52 3.61 F
1380 1609 0.109342 CTTCCCTGATAGCCGGCAAT 59.891 55.0 31.54 12.06 0.00 3.56 F
1381 1610 0.179020 TTCCCTGATAGCCGGCAATG 60.179 55.0 31.54 13.31 0.00 2.82 F
2288 2629 0.103026 CTGCATACTAGCCAGCACGA 59.897 55.0 0.00 0.00 32.87 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1393 1622 0.108662 GCATGGTTAAAGCCTGCACC 60.109 55.0 9.25 0.0 34.82 5.01 R
2273 2610 0.100682 CGTGTCGTGCTGGCTAGTAT 59.899 55.0 0.00 0.0 0.00 2.12 R
3188 5640 0.319555 ATCGTCGTCCACTTGTGGTG 60.320 55.0 18.05 12.5 44.96 4.17 R
3742 6195 0.038251 CTCTGCACTGCAACGGTCTA 60.038 55.0 4.99 0.0 38.41 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.675515 GGAATAAAACTCGCAACTTTCTTG 57.324 37.500 0.00 0.00 0.00 3.02
24 25 6.435428 GGAATAAAACTCGCAACTTTCTTGA 58.565 36.000 0.00 0.00 0.00 3.02
25 26 6.915843 GGAATAAAACTCGCAACTTTCTTGAA 59.084 34.615 0.00 0.00 0.00 2.69
26 27 7.434013 GGAATAAAACTCGCAACTTTCTTGAAA 59.566 33.333 0.00 0.00 0.00 2.69
27 28 8.696410 AATAAAACTCGCAACTTTCTTGAAAA 57.304 26.923 0.00 0.00 0.00 2.29
28 29 8.696410 ATAAAACTCGCAACTTTCTTGAAAAA 57.304 26.923 0.00 0.00 0.00 1.94
29 30 7.595311 AAAACTCGCAACTTTCTTGAAAAAT 57.405 28.000 0.00 0.00 0.00 1.82
30 31 8.696410 AAAACTCGCAACTTTCTTGAAAAATA 57.304 26.923 0.00 0.00 0.00 1.40
31 32 8.696410 AAACTCGCAACTTTCTTGAAAAATAA 57.304 26.923 0.00 0.00 0.00 1.40
32 33 7.914537 ACTCGCAACTTTCTTGAAAAATAAG 57.085 32.000 0.00 0.00 0.00 1.73
33 34 7.480810 ACTCGCAACTTTCTTGAAAAATAAGT 58.519 30.769 0.00 0.00 32.82 2.24
34 35 7.644157 ACTCGCAACTTTCTTGAAAAATAAGTC 59.356 33.333 0.00 0.00 30.98 3.01
35 36 7.703328 TCGCAACTTTCTTGAAAAATAAGTCT 58.297 30.769 0.00 0.00 30.98 3.24
36 37 7.643764 TCGCAACTTTCTTGAAAAATAAGTCTG 59.356 33.333 0.00 0.00 30.98 3.51
37 38 7.432252 CGCAACTTTCTTGAAAAATAAGTCTGT 59.568 33.333 0.00 0.00 30.98 3.41
38 39 9.087424 GCAACTTTCTTGAAAAATAAGTCTGTT 57.913 29.630 0.00 0.00 30.98 3.16
43 44 9.801873 TTTCTTGAAAAATAAGTCTGTTTCAGG 57.198 29.630 0.00 0.00 40.14 3.86
44 45 8.746052 TCTTGAAAAATAAGTCTGTTTCAGGA 57.254 30.769 5.90 5.90 41.17 3.86
45 46 9.184523 TCTTGAAAAATAAGTCTGTTTCAGGAA 57.815 29.630 7.17 0.00 40.77 3.36
46 47 9.971922 CTTGAAAAATAAGTCTGTTTCAGGAAT 57.028 29.630 0.00 0.00 40.14 3.01
47 48 9.965824 TTGAAAAATAAGTCTGTTTCAGGAATC 57.034 29.630 0.00 0.00 40.14 2.52
48 49 8.576442 TGAAAAATAAGTCTGTTTCAGGAATCC 58.424 33.333 0.00 0.00 35.60 3.01
49 50 8.477419 AAAAATAAGTCTGTTTCAGGAATCCA 57.523 30.769 0.61 0.00 31.51 3.41
50 51 8.477419 AAAATAAGTCTGTTTCAGGAATCCAA 57.523 30.769 0.61 0.00 31.51 3.53
51 52 8.477419 AAATAAGTCTGTTTCAGGAATCCAAA 57.523 30.769 0.61 0.00 31.51 3.28
52 53 8.655935 AATAAGTCTGTTTCAGGAATCCAAAT 57.344 30.769 0.61 0.00 31.51 2.32
53 54 6.581171 AAGTCTGTTTCAGGAATCCAAATC 57.419 37.500 0.61 0.00 31.51 2.17
54 55 5.012893 AGTCTGTTTCAGGAATCCAAATCC 58.987 41.667 0.61 0.00 37.22 3.01
55 56 4.766891 GTCTGTTTCAGGAATCCAAATCCA 59.233 41.667 0.61 0.00 39.55 3.41
56 57 5.243730 GTCTGTTTCAGGAATCCAAATCCAA 59.756 40.000 0.61 0.00 39.55 3.53
57 58 5.243730 TCTGTTTCAGGAATCCAAATCCAAC 59.756 40.000 0.61 0.00 39.55 3.77
58 59 4.283212 TGTTTCAGGAATCCAAATCCAACC 59.717 41.667 0.61 0.00 39.55 3.77
59 60 3.824001 TCAGGAATCCAAATCCAACCA 57.176 42.857 0.61 0.00 39.55 3.67
60 61 3.700538 TCAGGAATCCAAATCCAACCAG 58.299 45.455 0.61 0.00 39.55 4.00
61 62 2.167075 CAGGAATCCAAATCCAACCAGC 59.833 50.000 0.61 0.00 39.55 4.85
62 63 2.178580 GGAATCCAAATCCAACCAGCA 58.821 47.619 0.00 0.00 36.92 4.41
63 64 2.566724 GGAATCCAAATCCAACCAGCAA 59.433 45.455 0.00 0.00 36.92 3.91
64 65 3.198417 GGAATCCAAATCCAACCAGCAAT 59.802 43.478 0.00 0.00 36.92 3.56
65 66 4.323715 GGAATCCAAATCCAACCAGCAATT 60.324 41.667 0.00 0.00 36.92 2.32
66 67 3.959535 TCCAAATCCAACCAGCAATTC 57.040 42.857 0.00 0.00 0.00 2.17
67 68 2.230992 TCCAAATCCAACCAGCAATTCG 59.769 45.455 0.00 0.00 0.00 3.34
68 69 2.029110 CCAAATCCAACCAGCAATTCGT 60.029 45.455 0.00 0.00 0.00 3.85
69 70 3.244976 CAAATCCAACCAGCAATTCGTC 58.755 45.455 0.00 0.00 0.00 4.20
70 71 1.086696 ATCCAACCAGCAATTCGTCG 58.913 50.000 0.00 0.00 0.00 5.12
71 72 0.953471 TCCAACCAGCAATTCGTCGG 60.953 55.000 0.00 0.00 0.00 4.79
72 73 1.154225 CAACCAGCAATTCGTCGGC 60.154 57.895 0.00 0.00 0.00 5.54
73 74 1.302511 AACCAGCAATTCGTCGGCT 60.303 52.632 0.00 0.00 38.70 5.52
74 75 0.889186 AACCAGCAATTCGTCGGCTT 60.889 50.000 0.00 0.00 35.27 4.35
75 76 0.889186 ACCAGCAATTCGTCGGCTTT 60.889 50.000 0.00 0.00 35.27 3.51
76 77 0.454957 CCAGCAATTCGTCGGCTTTG 60.455 55.000 0.00 0.00 35.27 2.77
77 78 0.238289 CAGCAATTCGTCGGCTTTGT 59.762 50.000 0.00 0.00 35.27 2.83
78 79 0.517316 AGCAATTCGTCGGCTTTGTC 59.483 50.000 0.00 0.00 33.21 3.18
79 80 0.789383 GCAATTCGTCGGCTTTGTCG 60.789 55.000 0.00 0.00 0.00 4.35
80 81 0.787787 CAATTCGTCGGCTTTGTCGA 59.212 50.000 0.00 0.00 37.31 4.20
81 82 1.193650 CAATTCGTCGGCTTTGTCGAA 59.806 47.619 0.00 0.00 42.59 3.71
82 83 1.504359 ATTCGTCGGCTTTGTCGAAA 58.496 45.000 0.00 0.00 42.59 3.46
83 84 1.288350 TTCGTCGGCTTTGTCGAAAA 58.712 45.000 0.00 0.00 42.59 2.29
84 85 1.288350 TCGTCGGCTTTGTCGAAAAA 58.712 45.000 0.00 0.00 42.59 1.94
109 110 2.158813 ACCAATAATTCGTCGGAGGCAT 60.159 45.455 0.00 0.00 0.00 4.40
128 129 0.667993 TGGAAGCCAAAGAAACTGCG 59.332 50.000 0.00 0.00 0.00 5.18
131 132 0.668535 AAGCCAAAGAAACTGCGTCC 59.331 50.000 0.00 0.00 0.00 4.79
132 133 0.465460 AGCCAAAGAAACTGCGTCCA 60.465 50.000 0.00 0.00 0.00 4.02
170 171 4.817936 TACGGCCGGCCTAAACGC 62.818 66.667 41.01 15.33 0.00 4.84
215 216 4.459089 GCCTCGGTCCAGCCTCAC 62.459 72.222 0.00 0.00 34.25 3.51
216 217 2.681778 CCTCGGTCCAGCCTCACT 60.682 66.667 0.00 0.00 34.25 3.41
236 237 0.608035 ATTCCCACCGTGCGTTTGAT 60.608 50.000 0.00 0.00 0.00 2.57
240 241 0.446222 CCACCGTGCGTTTGATAAGG 59.554 55.000 0.00 0.00 0.00 2.69
242 243 0.321298 ACCGTGCGTTTGATAAGGCT 60.321 50.000 0.00 0.00 43.66 4.58
243 244 0.373716 CCGTGCGTTTGATAAGGCTC 59.626 55.000 0.00 0.00 43.66 4.70
244 245 1.075542 CGTGCGTTTGATAAGGCTCA 58.924 50.000 0.00 0.00 43.66 4.26
245 246 1.463056 CGTGCGTTTGATAAGGCTCAA 59.537 47.619 0.00 0.00 43.66 3.02
246 247 2.724839 CGTGCGTTTGATAAGGCTCAAC 60.725 50.000 0.00 0.00 43.66 3.18
247 248 1.810151 TGCGTTTGATAAGGCTCAACC 59.190 47.619 0.00 0.00 43.66 3.77
248 249 1.202031 GCGTTTGATAAGGCTCAACCG 60.202 52.381 1.45 1.45 46.52 4.44
249 250 1.202031 CGTTTGATAAGGCTCAACCGC 60.202 52.381 0.00 0.00 46.52 5.68
250 251 2.084546 GTTTGATAAGGCTCAACCGCT 58.915 47.619 0.00 0.00 46.52 5.52
251 252 2.024176 TTGATAAGGCTCAACCGCTC 57.976 50.000 0.00 0.00 46.52 5.03
252 253 0.901827 TGATAAGGCTCAACCGCTCA 59.098 50.000 0.00 0.00 46.52 4.26
253 254 1.277842 TGATAAGGCTCAACCGCTCAA 59.722 47.619 0.00 0.00 46.52 3.02
254 255 1.936547 GATAAGGCTCAACCGCTCAAG 59.063 52.381 0.00 0.00 46.52 3.02
255 256 0.036388 TAAGGCTCAACCGCTCAAGG 60.036 55.000 0.00 0.00 46.52 3.61
256 257 3.435186 GGCTCAACCGCTCAAGGC 61.435 66.667 0.00 0.00 37.64 4.35
257 258 2.669569 GCTCAACCGCTCAAGGCA 60.670 61.111 0.00 0.00 41.91 4.75
258 259 2.684843 GCTCAACCGCTCAAGGCAG 61.685 63.158 0.00 0.00 41.91 4.85
260 261 3.741476 CAACCGCTCAAGGCAGCC 61.741 66.667 1.84 1.84 41.91 4.85
261 262 3.958860 AACCGCTCAAGGCAGCCT 61.959 61.111 8.70 8.70 41.91 4.58
262 263 3.497884 AACCGCTCAAGGCAGCCTT 62.498 57.895 22.09 22.09 45.88 4.35
263 264 2.124507 AACCGCTCAAGGCAGCCTTA 62.125 55.000 26.96 13.71 42.67 2.69
264 265 2.109126 CCGCTCAAGGCAGCCTTAC 61.109 63.158 26.96 17.18 42.67 2.34
265 266 1.078848 CGCTCAAGGCAGCCTTACT 60.079 57.895 26.96 1.50 42.67 2.24
266 267 0.175760 CGCTCAAGGCAGCCTTACTA 59.824 55.000 26.96 13.81 42.67 1.82
267 268 1.657822 GCTCAAGGCAGCCTTACTAC 58.342 55.000 26.96 12.55 42.67 2.73
268 269 1.744114 GCTCAAGGCAGCCTTACTACC 60.744 57.143 26.96 9.68 42.67 3.18
269 270 1.834263 CTCAAGGCAGCCTTACTACCT 59.166 52.381 26.96 0.00 44.86 3.08
270 271 1.831736 TCAAGGCAGCCTTACTACCTC 59.168 52.381 26.96 0.00 41.79 3.85
271 272 1.134371 CAAGGCAGCCTTACTACCTCC 60.134 57.143 26.96 0.00 41.79 4.30
272 273 1.043673 AGGCAGCCTTACTACCTCCG 61.044 60.000 8.70 0.00 37.67 4.63
273 274 1.328430 GGCAGCCTTACTACCTCCGT 61.328 60.000 3.29 0.00 0.00 4.69
274 275 0.535797 GCAGCCTTACTACCTCCGTT 59.464 55.000 0.00 0.00 0.00 4.44
275 276 1.471153 GCAGCCTTACTACCTCCGTTC 60.471 57.143 0.00 0.00 0.00 3.95
276 277 2.100989 CAGCCTTACTACCTCCGTTCT 58.899 52.381 0.00 0.00 0.00 3.01
277 278 2.496470 CAGCCTTACTACCTCCGTTCTT 59.504 50.000 0.00 0.00 0.00 2.52
278 279 3.698040 CAGCCTTACTACCTCCGTTCTTA 59.302 47.826 0.00 0.00 0.00 2.10
279 280 4.159135 CAGCCTTACTACCTCCGTTCTTAA 59.841 45.833 0.00 0.00 0.00 1.85
280 281 4.774200 AGCCTTACTACCTCCGTTCTTAAA 59.226 41.667 0.00 0.00 0.00 1.52
281 282 5.246883 AGCCTTACTACCTCCGTTCTTAAAA 59.753 40.000 0.00 0.00 0.00 1.52
282 283 5.934043 GCCTTACTACCTCCGTTCTTAAAAA 59.066 40.000 0.00 0.00 0.00 1.94
314 315 5.514274 TCAACTTCATTGAAGGGTCAAAC 57.486 39.130 25.94 0.00 46.66 2.93
315 316 5.200483 TCAACTTCATTGAAGGGTCAAACT 58.800 37.500 25.94 4.11 46.66 2.66
316 317 6.361433 TCAACTTCATTGAAGGGTCAAACTA 58.639 36.000 25.94 2.63 46.66 2.24
317 318 6.262273 TCAACTTCATTGAAGGGTCAAACTAC 59.738 38.462 25.94 0.00 46.66 2.73
318 319 5.941788 ACTTCATTGAAGGGTCAAACTACT 58.058 37.500 25.94 2.35 46.66 2.57
319 320 5.998363 ACTTCATTGAAGGGTCAAACTACTC 59.002 40.000 25.94 0.00 46.66 2.59
320 321 5.560722 TCATTGAAGGGTCAAACTACTCA 57.439 39.130 0.00 0.00 46.66 3.41
321 322 5.935945 TCATTGAAGGGTCAAACTACTCAA 58.064 37.500 0.00 0.00 46.66 3.02
322 323 6.361433 TCATTGAAGGGTCAAACTACTCAAA 58.639 36.000 0.00 0.00 46.66 2.69
323 324 6.486657 TCATTGAAGGGTCAAACTACTCAAAG 59.513 38.462 0.00 0.00 46.66 2.77
324 325 5.367945 TGAAGGGTCAAACTACTCAAAGT 57.632 39.130 0.00 0.00 0.00 2.66
325 326 5.751586 TGAAGGGTCAAACTACTCAAAGTT 58.248 37.500 0.00 0.00 41.46 2.66
333 334 5.986004 AAACTACTCAAAGTTTGACCGAG 57.014 39.130 14.35 13.01 45.60 4.63
334 335 4.667519 ACTACTCAAAGTTTGACCGAGT 57.332 40.909 14.35 13.57 40.03 4.18
335 336 5.019785 ACTACTCAAAGTTTGACCGAGTT 57.980 39.130 14.35 0.00 37.98 3.01
336 337 5.425630 ACTACTCAAAGTTTGACCGAGTTT 58.574 37.500 14.35 0.19 37.98 2.66
337 338 4.616181 ACTCAAAGTTTGACCGAGTTTG 57.384 40.909 14.35 5.11 38.28 2.93
338 339 4.007659 ACTCAAAGTTTGACCGAGTTTGT 58.992 39.130 14.35 5.72 38.17 2.83
339 340 4.142687 ACTCAAAGTTTGACCGAGTTTGTG 60.143 41.667 14.35 3.74 38.17 3.33
340 341 2.844122 AAGTTTGACCGAGTTTGTGC 57.156 45.000 0.00 0.00 0.00 4.57
341 342 1.745232 AGTTTGACCGAGTTTGTGCA 58.255 45.000 0.00 0.00 0.00 4.57
342 343 2.088423 AGTTTGACCGAGTTTGTGCAA 58.912 42.857 0.00 0.00 0.00 4.08
343 344 2.490115 AGTTTGACCGAGTTTGTGCAAA 59.510 40.909 0.00 0.00 0.00 3.68
344 345 3.057174 AGTTTGACCGAGTTTGTGCAAAA 60.057 39.130 0.00 0.00 31.33 2.44
345 346 2.842208 TGACCGAGTTTGTGCAAAAG 57.158 45.000 0.00 0.00 31.33 2.27
346 347 2.088423 TGACCGAGTTTGTGCAAAAGT 58.912 42.857 0.00 0.00 31.33 2.66
347 348 3.271729 TGACCGAGTTTGTGCAAAAGTA 58.728 40.909 0.00 0.00 31.33 2.24
348 349 3.880490 TGACCGAGTTTGTGCAAAAGTAT 59.120 39.130 0.00 0.00 31.33 2.12
349 350 5.057819 TGACCGAGTTTGTGCAAAAGTATA 58.942 37.500 0.00 0.00 31.33 1.47
350 351 5.703592 TGACCGAGTTTGTGCAAAAGTATAT 59.296 36.000 0.00 0.00 31.33 0.86
351 352 6.128391 TGACCGAGTTTGTGCAAAAGTATATC 60.128 38.462 0.00 0.00 31.33 1.63
352 353 5.703592 ACCGAGTTTGTGCAAAAGTATATCA 59.296 36.000 0.00 0.00 31.33 2.15
353 354 6.205853 ACCGAGTTTGTGCAAAAGTATATCAA 59.794 34.615 0.00 0.00 31.33 2.57
354 355 7.094377 ACCGAGTTTGTGCAAAAGTATATCAAT 60.094 33.333 0.00 0.00 31.33 2.57
355 356 7.218773 CCGAGTTTGTGCAAAAGTATATCAATG 59.781 37.037 0.00 0.00 31.33 2.82
356 357 7.750458 CGAGTTTGTGCAAAAGTATATCAATGT 59.250 33.333 0.00 0.00 31.33 2.71
357 358 9.410556 GAGTTTGTGCAAAAGTATATCAATGTT 57.589 29.630 0.00 0.00 31.33 2.71
358 359 9.762933 AGTTTGTGCAAAAGTATATCAATGTTT 57.237 25.926 0.00 0.00 31.33 2.83
497 498 6.660887 TGAATTTTCAACAAAGTTGAAGGC 57.339 33.333 20.41 13.51 39.30 4.35
498 499 6.169094 TGAATTTTCAACAAAGTTGAAGGCA 58.831 32.000 20.41 15.24 39.30 4.75
499 500 6.091986 TGAATTTTCAACAAAGTTGAAGGCAC 59.908 34.615 20.41 15.15 39.30 5.01
500 501 4.527509 TTTCAACAAAGTTGAAGGCACA 57.472 36.364 20.41 7.40 39.30 4.57
501 502 3.502191 TCAACAAAGTTGAAGGCACAC 57.498 42.857 9.91 0.00 0.00 3.82
502 503 3.088532 TCAACAAAGTTGAAGGCACACT 58.911 40.909 9.91 0.00 0.00 3.55
503 504 3.128589 TCAACAAAGTTGAAGGCACACTC 59.871 43.478 9.91 0.00 0.00 3.51
504 505 3.004752 ACAAAGTTGAAGGCACACTCT 57.995 42.857 0.00 0.00 0.00 3.24
505 506 3.356290 ACAAAGTTGAAGGCACACTCTT 58.644 40.909 0.00 0.00 0.00 2.85
506 507 3.763897 ACAAAGTTGAAGGCACACTCTTT 59.236 39.130 0.00 0.00 0.00 2.52
507 508 4.142381 ACAAAGTTGAAGGCACACTCTTTC 60.142 41.667 0.00 0.00 0.00 2.62
508 509 3.281727 AGTTGAAGGCACACTCTTTCA 57.718 42.857 0.00 0.00 0.00 2.69
509 510 3.620488 AGTTGAAGGCACACTCTTTCAA 58.380 40.909 0.00 0.00 0.00 2.69
510 511 4.016444 AGTTGAAGGCACACTCTTTCAAA 58.984 39.130 3.26 0.00 0.00 2.69
511 512 4.462483 AGTTGAAGGCACACTCTTTCAAAA 59.538 37.500 3.26 0.00 0.00 2.44
512 513 5.047377 AGTTGAAGGCACACTCTTTCAAAAA 60.047 36.000 3.26 0.00 0.00 1.94
513 514 4.743493 TGAAGGCACACTCTTTCAAAAAC 58.257 39.130 0.00 0.00 0.00 2.43
514 515 3.420839 AGGCACACTCTTTCAAAAACG 57.579 42.857 0.00 0.00 0.00 3.60
515 516 3.013921 AGGCACACTCTTTCAAAAACGA 58.986 40.909 0.00 0.00 0.00 3.85
516 517 3.442273 AGGCACACTCTTTCAAAAACGAA 59.558 39.130 0.00 0.00 0.00 3.85
517 518 4.097892 AGGCACACTCTTTCAAAAACGAAT 59.902 37.500 0.00 0.00 0.00 3.34
518 519 4.207019 GGCACACTCTTTCAAAAACGAATG 59.793 41.667 0.00 0.00 0.00 2.67
519 520 4.207019 GCACACTCTTTCAAAAACGAATGG 59.793 41.667 0.00 0.00 0.00 3.16
520 521 5.577835 CACACTCTTTCAAAAACGAATGGA 58.422 37.500 0.00 0.00 0.00 3.41
521 522 5.682862 CACACTCTTTCAAAAACGAATGGAG 59.317 40.000 0.00 0.00 34.30 3.86
522 523 5.357032 ACACTCTTTCAAAAACGAATGGAGT 59.643 36.000 0.00 0.00 38.10 3.85
531 532 4.884668 AAACGAATGGAGTACCTCTCAA 57.115 40.909 0.00 0.00 44.40 3.02
542 543 2.254152 ACCTCTCAATGTCCCAGCTA 57.746 50.000 0.00 0.00 0.00 3.32
562 564 1.154488 CGAATTGTCCGTGTTGGCG 60.154 57.895 0.00 0.00 37.80 5.69
586 588 2.892425 GACGGGAGCGCAAGATGG 60.892 66.667 11.47 0.00 43.02 3.51
671 695 0.179051 ACGTAAGGCCAAACGGTTGA 60.179 50.000 27.11 0.00 43.25 3.18
675 699 1.408969 AAGGCCAAACGGTTGATGTT 58.591 45.000 16.49 1.15 36.83 2.71
699 723 2.360350 CACATGGCTCCAGGCGTT 60.360 61.111 0.00 0.00 44.42 4.84
716 740 1.009829 GTTCGCTAGCATGGAAGTGG 58.990 55.000 16.45 0.00 0.00 4.00
887 981 2.693591 CTGGAAGCTCGAAGTATACCCA 59.306 50.000 0.00 0.00 0.00 4.51
1259 1483 0.549950 CCCTGGCCATCATCAAGAGT 59.450 55.000 5.51 0.00 0.00 3.24
1363 1592 1.189524 AGTTGGCCACATGCATGCTT 61.190 50.000 26.53 10.16 43.89 3.91
1364 1593 0.738412 GTTGGCCACATGCATGCTTC 60.738 55.000 26.53 14.37 43.89 3.86
1379 1608 1.526887 CTTCCCTGATAGCCGGCAA 59.473 57.895 31.54 10.52 0.00 4.52
1380 1609 0.109342 CTTCCCTGATAGCCGGCAAT 59.891 55.000 31.54 12.06 0.00 3.56
1381 1610 0.179020 TTCCCTGATAGCCGGCAATG 60.179 55.000 31.54 13.31 0.00 2.82
1382 1611 1.601759 CCCTGATAGCCGGCAATGG 60.602 63.158 31.54 21.23 0.00 3.16
1390 1619 3.119193 CCGGCAATGGCATGTACC 58.881 61.111 7.75 1.90 43.71 3.34
1391 1620 1.752310 CCGGCAATGGCATGTACCA 60.752 57.895 7.75 0.00 45.82 3.25
1392 1621 1.727511 CCGGCAATGGCATGTACCAG 61.728 60.000 7.75 0.37 44.71 4.00
1393 1622 1.727511 CGGCAATGGCATGTACCAGG 61.728 60.000 7.75 0.00 44.71 4.45
1396 1625 1.105457 CAATGGCATGTACCAGGGTG 58.895 55.000 0.00 0.00 44.71 4.61
1397 1626 0.684153 AATGGCATGTACCAGGGTGC 60.684 55.000 0.00 0.00 44.71 5.01
1400 1629 1.750399 GCATGTACCAGGGTGCAGG 60.750 63.158 15.38 15.38 43.36 4.85
1405 1671 0.326927 GTACCAGGGTGCAGGCTTTA 59.673 55.000 0.06 0.00 0.00 1.85
1414 1680 1.517039 GCAGGCTTTAACCATGCGC 60.517 57.895 0.00 0.00 0.00 6.09
1426 1692 1.297158 CATGCGCGCTGCTTTACTC 60.297 57.895 33.29 0.00 46.63 2.59
1459 1725 3.702555 GCTGCGACGCGTCTGTTT 61.703 61.111 33.94 0.00 0.00 2.83
1614 1880 2.652530 GCCCGTGACTCCGTTGTA 59.347 61.111 0.00 0.00 0.00 2.41
1626 1892 2.858344 CTCCGTTGTAGCCGTAAGAATG 59.142 50.000 0.00 0.00 43.02 2.67
1633 1899 6.270815 GTTGTAGCCGTAAGAATGTCATCTA 58.729 40.000 0.00 0.00 43.02 1.98
1643 1910 6.536731 AAGAATGTCATCTAACGATCATGC 57.463 37.500 0.00 0.00 0.00 4.06
1690 2000 2.073816 ACCGTTTGCTTCGTATCCTTG 58.926 47.619 0.00 0.00 0.00 3.61
1745 2058 2.433970 CTCTGGGGAGAAGAGATTCCAC 59.566 54.545 0.00 0.00 43.27 4.02
1824 2139 2.504585 AGATCTTGAGCTGGCATTCAGA 59.495 45.455 0.00 0.00 46.18 3.27
2258 2591 2.355108 CCAGGGTGAACTCGTGATTGAT 60.355 50.000 0.00 0.00 0.00 2.57
2273 2610 5.340803 GTGATTGATAGACGAGTTACTGCA 58.659 41.667 0.00 0.00 0.00 4.41
2280 2621 4.555348 AGACGAGTTACTGCATACTAGC 57.445 45.455 0.00 0.00 0.00 3.42
2282 2623 3.021695 ACGAGTTACTGCATACTAGCCA 58.978 45.455 0.00 0.00 0.00 4.75
2286 2627 2.866762 GTTACTGCATACTAGCCAGCAC 59.133 50.000 0.00 0.00 32.87 4.40
2287 2628 0.179100 ACTGCATACTAGCCAGCACG 60.179 55.000 0.00 0.00 32.87 5.34
2288 2629 0.103026 CTGCATACTAGCCAGCACGA 59.897 55.000 0.00 0.00 32.87 4.35
2290 2631 0.179111 GCATACTAGCCAGCACGACA 60.179 55.000 0.00 0.00 0.00 4.35
2350 2706 7.862873 GCCAATATAAATACCAGCTCTTGAAAC 59.137 37.037 0.00 0.00 0.00 2.78
2370 2727 6.867816 TGAAACCGTGTATTTTATGTACGAGT 59.132 34.615 0.00 0.00 36.94 4.18
2461 2819 7.327064 AGGCATGGAGAATTACTATCAATCT 57.673 36.000 0.00 0.00 0.00 2.40
2571 4145 3.574284 TTCGAAATTTGGCATGAGGTG 57.426 42.857 0.00 0.00 0.00 4.00
2638 4214 4.926832 GGGAGAAAAGAGAAAACTCGAGAG 59.073 45.833 21.68 0.00 0.00 3.20
2673 4249 4.838152 GCTGCGCTCCCCGATTCA 62.838 66.667 9.73 0.00 40.02 2.57
2698 4274 2.414994 ATCACCCACTGCAGAAGATG 57.585 50.000 23.35 13.08 0.00 2.90
2768 4357 6.790232 TTTTCATTTTCCCTGTGTTCTTCT 57.210 33.333 0.00 0.00 0.00 2.85
2769 4358 6.391227 TTTCATTTTCCCTGTGTTCTTCTC 57.609 37.500 0.00 0.00 0.00 2.87
2770 4359 5.047566 TCATTTTCCCTGTGTTCTTCTCA 57.952 39.130 0.00 0.00 0.00 3.27
2771 4360 5.445069 TCATTTTCCCTGTGTTCTTCTCAA 58.555 37.500 0.00 0.00 0.00 3.02
2772 4361 5.890985 TCATTTTCCCTGTGTTCTTCTCAAA 59.109 36.000 0.00 0.00 0.00 2.69
2773 4362 6.379703 TCATTTTCCCTGTGTTCTTCTCAAAA 59.620 34.615 0.00 0.00 0.00 2.44
2782 4385 6.929625 TGTGTTCTTCTCAAAATTTTCCACA 58.070 32.000 0.00 2.26 0.00 4.17
2789 4392 8.531146 TCTTCTCAAAATTTTCCACAACTTTCT 58.469 29.630 0.00 0.00 0.00 2.52
2802 4405 7.320399 TCCACAACTTTCTCTTTTCCTTTTTC 58.680 34.615 0.00 0.00 0.00 2.29
2813 4416 8.683615 TCTCTTTTCCTTTTTCTTTGTTAGGAC 58.316 33.333 0.00 0.00 34.86 3.85
2888 5337 9.499479 TTTCTTTCTTGCCAAATTATAATGCAA 57.501 25.926 16.46 16.46 39.42 4.08
2927 5376 6.536941 GGAGCCAAACTTTTTAAACATTGACA 59.463 34.615 0.00 0.00 0.00 3.58
3008 5460 5.789643 TTTGTATGGTAGGTATCCGGTAC 57.210 43.478 0.00 3.37 0.00 3.34
3104 5556 4.339814 GGCGAGGAGGGAGTATATGAATAG 59.660 50.000 0.00 0.00 0.00 1.73
3105 5557 4.951094 GCGAGGAGGGAGTATATGAATAGT 59.049 45.833 0.00 0.00 0.00 2.12
3106 5558 5.066764 GCGAGGAGGGAGTATATGAATAGTC 59.933 48.000 0.00 0.00 37.32 2.59
3137 5589 9.975218 ATTAAATAATGACAAGTACAACCTCCT 57.025 29.630 0.00 0.00 0.00 3.69
3138 5590 7.923414 AAATAATGACAAGTACAACCTCCTC 57.077 36.000 0.00 0.00 0.00 3.71
3139 5591 3.594603 ATGACAAGTACAACCTCCTCG 57.405 47.619 0.00 0.00 0.00 4.63
3140 5592 2.589720 TGACAAGTACAACCTCCTCGA 58.410 47.619 0.00 0.00 0.00 4.04
3141 5593 3.162666 TGACAAGTACAACCTCCTCGAT 58.837 45.455 0.00 0.00 0.00 3.59
3142 5594 3.056821 TGACAAGTACAACCTCCTCGATG 60.057 47.826 0.00 0.00 0.00 3.84
3143 5595 2.233922 ACAAGTACAACCTCCTCGATGG 59.766 50.000 0.00 0.00 37.10 3.51
3144 5596 2.496070 CAAGTACAACCTCCTCGATGGA 59.504 50.000 0.00 5.11 43.86 3.41
3145 5597 2.100989 AGTACAACCTCCTCGATGGAC 58.899 52.381 0.00 0.00 40.56 4.02
3146 5598 2.100989 GTACAACCTCCTCGATGGACT 58.899 52.381 6.30 0.00 40.56 3.85
3147 5599 1.645710 ACAACCTCCTCGATGGACTT 58.354 50.000 6.30 0.00 40.56 3.01
3148 5600 1.276421 ACAACCTCCTCGATGGACTTG 59.724 52.381 6.30 9.34 40.56 3.16
3149 5601 0.905357 AACCTCCTCGATGGACTTGG 59.095 55.000 6.30 6.30 40.56 3.61
3150 5602 1.144936 CCTCCTCGATGGACTTGGC 59.855 63.158 0.11 0.00 40.56 4.52
3151 5603 1.144936 CTCCTCGATGGACTTGGCC 59.855 63.158 0.00 0.00 40.56 5.36
3152 5604 1.612146 TCCTCGATGGACTTGGCCA 60.612 57.895 0.00 0.00 40.56 5.36
3153 5605 1.153289 CCTCGATGGACTTGGCCAG 60.153 63.158 5.11 2.72 42.15 4.85
3154 5606 1.817099 CTCGATGGACTTGGCCAGC 60.817 63.158 5.11 0.00 42.15 4.85
3155 5607 2.825836 CGATGGACTTGGCCAGCC 60.826 66.667 5.11 10.07 41.19 4.85
3156 5608 2.356278 GATGGACTTGGCCAGCCA 59.644 61.111 21.67 21.67 45.63 4.75
3167 5619 4.181010 CCAGCCACCTCCCCGATG 62.181 72.222 0.00 0.00 0.00 3.84
3168 5620 4.181010 CAGCCACCTCCCCGATGG 62.181 72.222 0.00 0.00 36.51 3.51
3178 5630 2.768344 CCCGATGGGTGGGTAGCT 60.768 66.667 0.00 0.00 42.07 3.32
3179 5631 2.505982 CCGATGGGTGGGTAGCTG 59.494 66.667 0.00 0.00 0.00 4.24
3180 5632 2.203070 CGATGGGTGGGTAGCTGC 60.203 66.667 0.00 0.00 0.00 5.25
3181 5633 2.998097 GATGGGTGGGTAGCTGCA 59.002 61.111 3.61 0.00 0.00 4.41
3182 5634 1.153086 GATGGGTGGGTAGCTGCAG 60.153 63.158 10.11 10.11 0.00 4.41
3183 5635 1.915078 GATGGGTGGGTAGCTGCAGT 61.915 60.000 16.64 4.79 0.00 4.40
3184 5636 2.045926 GGGTGGGTAGCTGCAGTG 60.046 66.667 16.64 0.00 0.00 3.66
3185 5637 2.747855 GGTGGGTAGCTGCAGTGC 60.748 66.667 16.64 8.58 0.00 4.40
3186 5638 3.121030 GTGGGTAGCTGCAGTGCG 61.121 66.667 16.64 6.61 38.13 5.34
3187 5639 4.393155 TGGGTAGCTGCAGTGCGG 62.393 66.667 20.08 20.08 38.13 5.69
3196 5648 4.332637 GCAGTGCGGCACCACAAG 62.333 66.667 28.14 14.55 38.18 3.16
3197 5649 2.901840 CAGTGCGGCACCACAAGT 60.902 61.111 28.14 6.99 38.18 3.16
3209 5661 1.781555 CACAAGTGGACGACGATGC 59.218 57.895 0.00 0.00 0.00 3.91
3210 5662 0.943835 CACAAGTGGACGACGATGCA 60.944 55.000 0.00 0.00 0.00 3.96
3211 5663 0.667487 ACAAGTGGACGACGATGCAG 60.667 55.000 0.00 0.00 0.00 4.41
3212 5664 1.079819 AAGTGGACGACGATGCAGG 60.080 57.895 0.00 0.00 0.00 4.85
3213 5665 3.188786 GTGGACGACGATGCAGGC 61.189 66.667 0.00 0.00 0.00 4.85
3214 5666 3.381983 TGGACGACGATGCAGGCT 61.382 61.111 0.00 0.00 0.00 4.58
3215 5667 2.049767 TGGACGACGATGCAGGCTA 61.050 57.895 0.00 0.00 0.00 3.93
3216 5668 1.364171 GGACGACGATGCAGGCTAT 59.636 57.895 0.00 0.00 0.00 2.97
3217 5669 0.596577 GGACGACGATGCAGGCTATA 59.403 55.000 0.00 0.00 0.00 1.31
3218 5670 1.202582 GGACGACGATGCAGGCTATAT 59.797 52.381 0.00 0.00 0.00 0.86
3219 5671 2.520979 GACGACGATGCAGGCTATATC 58.479 52.381 0.00 0.00 0.00 1.63
3220 5672 2.162608 GACGACGATGCAGGCTATATCT 59.837 50.000 0.00 0.00 0.00 1.98
3221 5673 3.344515 ACGACGATGCAGGCTATATCTA 58.655 45.455 0.00 0.00 0.00 1.98
3222 5674 3.375610 ACGACGATGCAGGCTATATCTAG 59.624 47.826 0.00 0.00 0.00 2.43
3223 5675 3.242903 CGACGATGCAGGCTATATCTAGG 60.243 52.174 0.00 0.00 0.00 3.02
3224 5676 3.697045 GACGATGCAGGCTATATCTAGGT 59.303 47.826 0.00 0.00 0.00 3.08
3225 5677 3.697045 ACGATGCAGGCTATATCTAGGTC 59.303 47.826 0.00 0.00 0.00 3.85
3226 5678 3.951037 CGATGCAGGCTATATCTAGGTCT 59.049 47.826 0.00 0.00 0.00 3.85
3227 5679 4.202000 CGATGCAGGCTATATCTAGGTCTG 60.202 50.000 0.00 0.00 0.00 3.51
3228 5680 2.828520 TGCAGGCTATATCTAGGTCTGC 59.171 50.000 13.61 13.61 44.24 4.26
3229 5681 2.828520 GCAGGCTATATCTAGGTCTGCA 59.171 50.000 15.07 0.00 43.66 4.41
3230 5682 3.119173 GCAGGCTATATCTAGGTCTGCAG 60.119 52.174 15.07 7.63 43.66 4.41
3231 5683 3.446873 CAGGCTATATCTAGGTCTGCAGG 59.553 52.174 15.13 0.00 0.00 4.85
3232 5684 3.335183 AGGCTATATCTAGGTCTGCAGGA 59.665 47.826 15.13 2.60 0.00 3.86
3233 5685 3.699038 GGCTATATCTAGGTCTGCAGGAG 59.301 52.174 15.13 6.69 0.00 3.69
3234 5686 4.340617 GCTATATCTAGGTCTGCAGGAGT 58.659 47.826 15.13 0.58 0.00 3.85
3235 5687 5.502079 GCTATATCTAGGTCTGCAGGAGTA 58.498 45.833 15.13 1.85 0.00 2.59
3236 5688 5.946972 GCTATATCTAGGTCTGCAGGAGTAA 59.053 44.000 15.13 0.00 0.00 2.24
3237 5689 6.094881 GCTATATCTAGGTCTGCAGGAGTAAG 59.905 46.154 15.13 5.82 0.00 2.34
3238 5690 4.528076 ATCTAGGTCTGCAGGAGTAAGA 57.472 45.455 15.13 11.00 0.00 2.10
3239 5691 3.892284 TCTAGGTCTGCAGGAGTAAGAG 58.108 50.000 15.13 2.95 0.00 2.85
3240 5692 2.614134 AGGTCTGCAGGAGTAAGAGT 57.386 50.000 15.13 0.00 0.00 3.24
3241 5693 2.452505 AGGTCTGCAGGAGTAAGAGTC 58.547 52.381 15.13 0.00 0.00 3.36
3242 5694 1.133407 GGTCTGCAGGAGTAAGAGTCG 59.867 57.143 15.13 0.00 0.00 4.18
3243 5695 2.085320 GTCTGCAGGAGTAAGAGTCGA 58.915 52.381 15.13 0.00 0.00 4.20
3244 5696 2.096819 GTCTGCAGGAGTAAGAGTCGAG 59.903 54.545 15.13 0.00 0.00 4.04
3245 5697 1.403679 CTGCAGGAGTAAGAGTCGAGG 59.596 57.143 5.57 0.00 0.00 4.63
3246 5698 1.004394 TGCAGGAGTAAGAGTCGAGGA 59.996 52.381 0.00 0.00 0.00 3.71
3247 5699 1.673920 GCAGGAGTAAGAGTCGAGGAG 59.326 57.143 0.00 0.00 0.00 3.69
3248 5700 2.681390 GCAGGAGTAAGAGTCGAGGAGA 60.681 54.545 0.00 0.00 0.00 3.71
3266 5718 9.884636 TCGAGGAGACAAAAAGATATTTAATGA 57.115 29.630 5.76 0.00 0.00 2.57
3284 5736 8.498054 TTTAATGATGATTCACAAGTCTCCTC 57.502 34.615 0.00 0.00 33.85 3.71
3285 5737 4.115401 TGATGATTCACAAGTCTCCTCG 57.885 45.455 0.00 0.00 0.00 4.63
3286 5738 3.763897 TGATGATTCACAAGTCTCCTCGA 59.236 43.478 0.00 0.00 0.00 4.04
3287 5739 3.857549 TGATTCACAAGTCTCCTCGAG 57.142 47.619 5.13 5.13 0.00 4.04
3288 5740 2.493675 TGATTCACAAGTCTCCTCGAGG 59.506 50.000 26.32 26.32 0.00 4.63
3289 5741 2.287977 TTCACAAGTCTCCTCGAGGA 57.712 50.000 31.67 31.67 43.08 3.71
3301 5753 3.501349 TCCTCGAGGAGATAAGAATGGG 58.499 50.000 30.49 0.03 39.78 4.00
3302 5754 3.140332 TCCTCGAGGAGATAAGAATGGGA 59.860 47.826 30.49 2.85 39.78 4.37
3303 5755 3.898123 CCTCGAGGAGATAAGAATGGGAA 59.102 47.826 28.21 0.00 37.39 3.97
3304 5756 4.021544 CCTCGAGGAGATAAGAATGGGAAG 60.022 50.000 28.21 0.00 37.39 3.46
3305 5757 3.898123 TCGAGGAGATAAGAATGGGAAGG 59.102 47.826 0.00 0.00 0.00 3.46
3306 5758 3.898123 CGAGGAGATAAGAATGGGAAGGA 59.102 47.826 0.00 0.00 0.00 3.36
3307 5759 4.021544 CGAGGAGATAAGAATGGGAAGGAG 60.022 50.000 0.00 0.00 0.00 3.69
3308 5760 3.650461 AGGAGATAAGAATGGGAAGGAGC 59.350 47.826 0.00 0.00 0.00 4.70
3309 5761 3.650461 GGAGATAAGAATGGGAAGGAGCT 59.350 47.826 0.00 0.00 0.00 4.09
3310 5762 4.103943 GGAGATAAGAATGGGAAGGAGCTT 59.896 45.833 0.00 0.00 0.00 3.74
3311 5763 5.046288 AGATAAGAATGGGAAGGAGCTTG 57.954 43.478 0.00 0.00 0.00 4.01
3312 5764 2.521547 AAGAATGGGAAGGAGCTTGG 57.478 50.000 0.00 0.00 0.00 3.61
3313 5765 1.673767 AGAATGGGAAGGAGCTTGGA 58.326 50.000 0.00 0.00 0.00 3.53
3314 5766 1.563410 AGAATGGGAAGGAGCTTGGAG 59.437 52.381 0.00 0.00 0.00 3.86
3315 5767 1.283321 GAATGGGAAGGAGCTTGGAGT 59.717 52.381 0.00 0.00 0.00 3.85
3316 5768 2.270434 ATGGGAAGGAGCTTGGAGTA 57.730 50.000 0.00 0.00 0.00 2.59
3317 5769 2.038863 TGGGAAGGAGCTTGGAGTAA 57.961 50.000 0.00 0.00 0.00 2.24
3318 5770 2.562296 TGGGAAGGAGCTTGGAGTAAT 58.438 47.619 0.00 0.00 0.00 1.89
3319 5771 2.919602 TGGGAAGGAGCTTGGAGTAATT 59.080 45.455 0.00 0.00 0.00 1.40
3320 5772 3.054361 TGGGAAGGAGCTTGGAGTAATTC 60.054 47.826 0.00 0.00 0.00 2.17
3321 5773 3.546724 GGAAGGAGCTTGGAGTAATTCC 58.453 50.000 0.00 0.00 46.98 3.01
3322 5774 3.201045 GGAAGGAGCTTGGAGTAATTCCT 59.799 47.826 0.00 0.00 46.92 3.36
3323 5775 4.447290 GAAGGAGCTTGGAGTAATTCCTC 58.553 47.826 0.00 0.00 46.92 3.71
3324 5776 3.454858 AGGAGCTTGGAGTAATTCCTCA 58.545 45.455 0.08 0.00 46.92 3.86
3325 5777 4.043596 AGGAGCTTGGAGTAATTCCTCAT 58.956 43.478 0.08 0.00 46.92 2.90
3326 5778 4.476479 AGGAGCTTGGAGTAATTCCTCATT 59.524 41.667 0.08 0.00 46.92 2.57
3327 5779 4.819088 GGAGCTTGGAGTAATTCCTCATTC 59.181 45.833 0.08 0.00 46.92 2.67
3328 5780 4.446371 AGCTTGGAGTAATTCCTCATTCG 58.554 43.478 0.08 0.00 46.92 3.34
3329 5781 3.561725 GCTTGGAGTAATTCCTCATTCGG 59.438 47.826 0.08 0.00 46.92 4.30
3330 5782 3.838244 TGGAGTAATTCCTCATTCGGG 57.162 47.619 0.08 0.00 46.92 5.14
3331 5783 3.380393 TGGAGTAATTCCTCATTCGGGA 58.620 45.455 0.08 0.00 46.92 5.14
3332 5784 3.973973 TGGAGTAATTCCTCATTCGGGAT 59.026 43.478 0.08 0.00 46.92 3.85
3333 5785 4.412199 TGGAGTAATTCCTCATTCGGGATT 59.588 41.667 0.08 0.00 46.92 3.01
3334 5786 5.605069 TGGAGTAATTCCTCATTCGGGATTA 59.395 40.000 0.08 0.00 46.92 1.75
3335 5787 6.166982 GGAGTAATTCCTCATTCGGGATTAG 58.833 44.000 0.08 0.00 43.16 1.73
3336 5788 6.115448 AGTAATTCCTCATTCGGGATTAGG 57.885 41.667 0.00 0.00 32.41 2.69
3337 5789 4.373156 AATTCCTCATTCGGGATTAGGG 57.627 45.455 0.00 0.00 32.41 3.53
3338 5790 2.787339 TCCTCATTCGGGATTAGGGA 57.213 50.000 0.00 0.00 0.00 4.20
3339 5791 3.054779 TCCTCATTCGGGATTAGGGAA 57.945 47.619 0.00 0.00 0.00 3.97
3340 5792 3.389866 TCCTCATTCGGGATTAGGGAAA 58.610 45.455 0.00 0.00 0.00 3.13
3341 5793 3.980698 TCCTCATTCGGGATTAGGGAAAT 59.019 43.478 0.00 0.00 0.00 2.17
3342 5794 4.415512 TCCTCATTCGGGATTAGGGAAATT 59.584 41.667 0.00 0.00 0.00 1.82
3343 5795 5.103686 TCCTCATTCGGGATTAGGGAAATTT 60.104 40.000 0.00 0.00 0.00 1.82
3344 5796 5.241728 CCTCATTCGGGATTAGGGAAATTTC 59.758 44.000 9.83 9.83 0.00 2.17
3345 5797 6.013554 TCATTCGGGATTAGGGAAATTTCT 57.986 37.500 17.42 1.79 0.00 2.52
3346 5798 6.431722 TCATTCGGGATTAGGGAAATTTCTT 58.568 36.000 17.42 9.11 0.00 2.52
3347 5799 6.895204 TCATTCGGGATTAGGGAAATTTCTTT 59.105 34.615 17.42 8.79 0.00 2.52
3348 5800 7.398904 TCATTCGGGATTAGGGAAATTTCTTTT 59.601 33.333 17.42 6.52 0.00 2.27
3349 5801 6.524101 TCGGGATTAGGGAAATTTCTTTTG 57.476 37.500 17.42 0.11 0.00 2.44
3350 5802 6.249951 TCGGGATTAGGGAAATTTCTTTTGA 58.750 36.000 17.42 1.90 0.00 2.69
3351 5803 6.895204 TCGGGATTAGGGAAATTTCTTTTGAT 59.105 34.615 17.42 6.21 0.00 2.57
3352 5804 7.398904 TCGGGATTAGGGAAATTTCTTTTGATT 59.601 33.333 17.42 0.00 0.00 2.57
3353 5805 8.691797 CGGGATTAGGGAAATTTCTTTTGATTA 58.308 33.333 17.42 0.00 0.00 1.75
3396 5848 8.554490 AAGCTGATAGGGTATATACTTATGGG 57.446 38.462 12.54 7.28 0.00 4.00
3686 6139 0.542805 GGTACATTAAGTCCGGGGCA 59.457 55.000 0.00 0.00 0.00 5.36
3867 6320 3.181459 GGAAGGTGATCTCTTCTAAGGGC 60.181 52.174 20.56 7.07 40.17 5.19
4104 6559 4.307432 GTCGAGTGATCTTTTGGACTTCA 58.693 43.478 0.00 0.00 0.00 3.02
4268 6723 3.113386 GATCCCCGCGCTGCTTTTC 62.113 63.158 5.56 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.435428 TCAAGAAAGTTGCGAGTTTTATTCC 58.565 36.000 8.19 0.00 0.00 3.01
1 2 7.908193 TTCAAGAAAGTTGCGAGTTTTATTC 57.092 32.000 8.19 0.00 0.00 1.75
3 4 8.696410 TTTTTCAAGAAAGTTGCGAGTTTTAT 57.304 26.923 8.19 0.00 0.00 1.40
4 5 8.696410 ATTTTTCAAGAAAGTTGCGAGTTTTA 57.304 26.923 8.19 0.00 0.00 1.52
6 7 8.696410 TTATTTTTCAAGAAAGTTGCGAGTTT 57.304 26.923 6.46 6.46 0.00 2.66
7 8 7.973944 ACTTATTTTTCAAGAAAGTTGCGAGTT 59.026 29.630 0.00 0.00 0.00 3.01
8 9 7.480810 ACTTATTTTTCAAGAAAGTTGCGAGT 58.519 30.769 0.00 0.00 0.00 4.18
9 10 7.857885 AGACTTATTTTTCAAGAAAGTTGCGAG 59.142 33.333 0.00 0.00 30.83 5.03
10 11 7.643764 CAGACTTATTTTTCAAGAAAGTTGCGA 59.356 33.333 0.00 0.00 30.83 5.10
11 12 7.432252 ACAGACTTATTTTTCAAGAAAGTTGCG 59.568 33.333 0.00 0.00 30.83 4.85
12 13 8.634475 ACAGACTTATTTTTCAAGAAAGTTGC 57.366 30.769 0.00 0.00 30.83 4.17
17 18 9.801873 CCTGAAACAGACTTATTTTTCAAGAAA 57.198 29.630 0.00 0.00 37.48 2.52
18 19 9.184523 TCCTGAAACAGACTTATTTTTCAAGAA 57.815 29.630 0.00 0.00 37.48 2.52
19 20 8.746052 TCCTGAAACAGACTTATTTTTCAAGA 57.254 30.769 0.00 0.00 37.48 3.02
20 21 9.971922 ATTCCTGAAACAGACTTATTTTTCAAG 57.028 29.630 0.00 0.00 37.48 3.02
21 22 9.965824 GATTCCTGAAACAGACTTATTTTTCAA 57.034 29.630 0.00 0.00 37.48 2.69
22 23 8.576442 GGATTCCTGAAACAGACTTATTTTTCA 58.424 33.333 0.00 0.00 36.70 2.69
23 24 8.576442 TGGATTCCTGAAACAGACTTATTTTTC 58.424 33.333 3.95 0.00 32.44 2.29
24 25 8.477419 TGGATTCCTGAAACAGACTTATTTTT 57.523 30.769 3.95 0.00 32.44 1.94
25 26 8.477419 TTGGATTCCTGAAACAGACTTATTTT 57.523 30.769 3.95 0.00 32.44 1.82
26 27 8.477419 TTTGGATTCCTGAAACAGACTTATTT 57.523 30.769 3.95 0.00 32.44 1.40
27 28 8.655935 ATTTGGATTCCTGAAACAGACTTATT 57.344 30.769 3.95 0.00 32.44 1.40
28 29 7.340487 GGATTTGGATTCCTGAAACAGACTTAT 59.660 37.037 3.95 0.00 32.44 1.73
29 30 6.659242 GGATTTGGATTCCTGAAACAGACTTA 59.341 38.462 3.95 0.00 32.44 2.24
30 31 5.478332 GGATTTGGATTCCTGAAACAGACTT 59.522 40.000 3.95 0.00 32.44 3.01
31 32 5.012893 GGATTTGGATTCCTGAAACAGACT 58.987 41.667 3.95 0.00 32.44 3.24
32 33 4.766891 TGGATTTGGATTCCTGAAACAGAC 59.233 41.667 3.95 0.00 32.44 3.51
33 34 4.996793 TGGATTTGGATTCCTGAAACAGA 58.003 39.130 3.95 0.00 32.44 3.41
34 35 5.473039 GTTGGATTTGGATTCCTGAAACAG 58.527 41.667 3.95 0.00 34.17 3.16
35 36 4.283212 GGTTGGATTTGGATTCCTGAAACA 59.717 41.667 3.95 1.33 34.17 2.83
36 37 4.283212 TGGTTGGATTTGGATTCCTGAAAC 59.717 41.667 3.95 1.00 34.17 2.78
37 38 4.487804 TGGTTGGATTTGGATTCCTGAAA 58.512 39.130 3.95 0.00 34.17 2.69
38 39 4.088634 CTGGTTGGATTTGGATTCCTGAA 58.911 43.478 3.95 0.00 34.17 3.02
39 40 3.700538 CTGGTTGGATTTGGATTCCTGA 58.299 45.455 3.95 0.00 34.17 3.86
40 41 2.167075 GCTGGTTGGATTTGGATTCCTG 59.833 50.000 3.95 0.00 34.17 3.86
41 42 2.225343 TGCTGGTTGGATTTGGATTCCT 60.225 45.455 3.95 0.00 34.17 3.36
42 43 2.178580 TGCTGGTTGGATTTGGATTCC 58.821 47.619 0.00 0.00 0.00 3.01
43 44 3.959535 TTGCTGGTTGGATTTGGATTC 57.040 42.857 0.00 0.00 0.00 2.52
44 45 4.621274 CGAATTGCTGGTTGGATTTGGATT 60.621 41.667 0.00 0.00 0.00 3.01
45 46 3.119029 CGAATTGCTGGTTGGATTTGGAT 60.119 43.478 0.00 0.00 0.00 3.41
46 47 2.230992 CGAATTGCTGGTTGGATTTGGA 59.769 45.455 0.00 0.00 0.00 3.53
47 48 2.029110 ACGAATTGCTGGTTGGATTTGG 60.029 45.455 0.00 0.00 0.00 3.28
48 49 3.244976 GACGAATTGCTGGTTGGATTTG 58.755 45.455 0.00 0.00 0.00 2.32
49 50 2.095263 CGACGAATTGCTGGTTGGATTT 60.095 45.455 0.00 0.00 0.00 2.17
50 51 1.468520 CGACGAATTGCTGGTTGGATT 59.531 47.619 0.00 0.00 0.00 3.01
51 52 1.086696 CGACGAATTGCTGGTTGGAT 58.913 50.000 0.00 0.00 0.00 3.41
52 53 0.953471 CCGACGAATTGCTGGTTGGA 60.953 55.000 0.00 0.00 37.40 3.53
53 54 1.501741 CCGACGAATTGCTGGTTGG 59.498 57.895 0.00 0.00 0.00 3.77
54 55 1.154225 GCCGACGAATTGCTGGTTG 60.154 57.895 0.00 0.00 0.00 3.77
55 56 0.889186 AAGCCGACGAATTGCTGGTT 60.889 50.000 0.00 0.00 35.08 3.67
56 57 0.889186 AAAGCCGACGAATTGCTGGT 60.889 50.000 0.00 0.00 35.08 4.00
57 58 0.454957 CAAAGCCGACGAATTGCTGG 60.455 55.000 0.00 0.00 35.08 4.85
58 59 0.238289 ACAAAGCCGACGAATTGCTG 59.762 50.000 0.00 0.00 35.08 4.41
59 60 0.517316 GACAAAGCCGACGAATTGCT 59.483 50.000 0.00 0.00 36.79 3.91
60 61 0.789383 CGACAAAGCCGACGAATTGC 60.789 55.000 0.00 0.00 0.00 3.56
61 62 0.787787 TCGACAAAGCCGACGAATTG 59.212 50.000 0.00 1.00 30.47 2.32
62 63 1.504359 TTCGACAAAGCCGACGAATT 58.496 45.000 0.00 0.00 37.95 2.17
63 64 1.504359 TTTCGACAAAGCCGACGAAT 58.496 45.000 0.00 0.00 41.32 3.34
64 65 1.288350 TTTTCGACAAAGCCGACGAA 58.712 45.000 0.00 0.00 40.34 3.85
65 66 1.288350 TTTTTCGACAAAGCCGACGA 58.712 45.000 0.00 0.00 35.61 4.20
66 67 3.810148 TTTTTCGACAAAGCCGACG 57.190 47.368 0.00 0.00 35.61 5.12
84 85 4.380128 GCCTCCGACGAATTATTGGTTTTT 60.380 41.667 0.00 0.00 0.00 1.94
85 86 3.128068 GCCTCCGACGAATTATTGGTTTT 59.872 43.478 0.00 0.00 0.00 2.43
86 87 2.681344 GCCTCCGACGAATTATTGGTTT 59.319 45.455 0.00 0.00 0.00 3.27
92 93 1.691976 TCCATGCCTCCGACGAATTAT 59.308 47.619 0.00 0.00 0.00 1.28
93 94 1.116308 TCCATGCCTCCGACGAATTA 58.884 50.000 0.00 0.00 0.00 1.40
109 110 0.667993 CGCAGTTTCTTTGGCTTCCA 59.332 50.000 0.00 0.00 0.00 3.53
124 125 0.249238 GATCTGTAGGCTGGACGCAG 60.249 60.000 0.00 0.00 41.67 5.18
128 129 1.742768 CCCGATCTGTAGGCTGGAC 59.257 63.158 0.00 0.00 0.00 4.02
131 132 2.423446 GGCCCGATCTGTAGGCTG 59.577 66.667 0.00 0.00 46.31 4.85
132 133 2.041922 TGGCCCGATCTGTAGGCT 60.042 61.111 0.00 0.00 46.31 4.58
203 204 0.470341 GGGAATAGTGAGGCTGGACC 59.530 60.000 0.00 0.00 39.61 4.46
206 207 0.181350 GGTGGGAATAGTGAGGCTGG 59.819 60.000 0.00 0.00 0.00 4.85
208 209 0.617820 ACGGTGGGAATAGTGAGGCT 60.618 55.000 0.00 0.00 0.00 4.58
215 216 0.446222 CAAACGCACGGTGGGAATAG 59.554 55.000 28.85 13.01 34.12 1.73
216 217 0.035036 TCAAACGCACGGTGGGAATA 59.965 50.000 28.85 10.35 34.12 1.75
236 237 0.036388 CCTTGAGCGGTTGAGCCTTA 60.036 55.000 0.00 0.00 38.01 2.69
248 249 1.657822 GTAGTAAGGCTGCCTTGAGC 58.342 55.000 37.43 26.89 44.44 4.26
249 250 2.317530 GGTAGTAAGGCTGCCTTGAG 57.682 55.000 37.43 0.00 44.44 3.02
255 256 0.535797 AACGGAGGTAGTAAGGCTGC 59.464 55.000 0.00 0.00 0.00 5.25
256 257 2.100989 AGAACGGAGGTAGTAAGGCTG 58.899 52.381 0.00 0.00 0.00 4.85
257 258 2.528673 AGAACGGAGGTAGTAAGGCT 57.471 50.000 0.00 0.00 0.00 4.58
258 259 4.725790 TTAAGAACGGAGGTAGTAAGGC 57.274 45.455 0.00 0.00 0.00 4.35
292 293 5.200483 AGTTTGACCCTTCAATGAAGTTGA 58.800 37.500 20.18 0.08 44.87 3.18
293 294 5.520376 AGTTTGACCCTTCAATGAAGTTG 57.480 39.130 20.18 13.60 41.50 3.16
294 295 6.365520 AGTAGTTTGACCCTTCAATGAAGTT 58.634 36.000 20.18 8.00 41.50 2.66
295 296 5.941788 AGTAGTTTGACCCTTCAATGAAGT 58.058 37.500 20.18 4.98 41.50 3.01
296 297 5.997746 TGAGTAGTTTGACCCTTCAATGAAG 59.002 40.000 15.64 15.64 41.50 3.02
297 298 5.935945 TGAGTAGTTTGACCCTTCAATGAA 58.064 37.500 0.00 0.00 41.50 2.57
298 299 5.560722 TGAGTAGTTTGACCCTTCAATGA 57.439 39.130 0.00 0.00 41.50 2.57
299 300 6.263168 ACTTTGAGTAGTTTGACCCTTCAATG 59.737 38.462 0.00 0.00 41.50 2.82
300 301 6.365520 ACTTTGAGTAGTTTGACCCTTCAAT 58.634 36.000 0.00 0.00 41.50 2.57
301 302 5.751586 ACTTTGAGTAGTTTGACCCTTCAA 58.248 37.500 0.00 0.00 40.14 2.69
302 303 5.367945 ACTTTGAGTAGTTTGACCCTTCA 57.632 39.130 0.00 0.00 0.00 3.02
303 304 6.694877 AAACTTTGAGTAGTTTGACCCTTC 57.305 37.500 0.00 0.00 44.42 3.46
311 312 5.425630 ACTCGGTCAAACTTTGAGTAGTTT 58.574 37.500 4.36 0.00 46.42 2.66
312 313 5.019785 ACTCGGTCAAACTTTGAGTAGTT 57.980 39.130 4.36 0.00 41.01 2.24
313 314 4.667519 ACTCGGTCAAACTTTGAGTAGT 57.332 40.909 4.36 6.10 41.01 2.73
314 315 5.293569 ACAAACTCGGTCAAACTTTGAGTAG 59.706 40.000 4.36 5.55 41.01 2.57
315 316 5.064198 CACAAACTCGGTCAAACTTTGAGTA 59.936 40.000 4.36 0.00 41.01 2.59
316 317 4.007659 ACAAACTCGGTCAAACTTTGAGT 58.992 39.130 4.36 0.00 41.01 3.41
317 318 4.342772 CACAAACTCGGTCAAACTTTGAG 58.657 43.478 4.36 0.00 41.01 3.02
318 319 3.426963 GCACAAACTCGGTCAAACTTTGA 60.427 43.478 0.00 0.00 37.33 2.69
319 320 2.851824 GCACAAACTCGGTCAAACTTTG 59.148 45.455 0.00 0.00 0.00 2.77
320 321 2.490115 TGCACAAACTCGGTCAAACTTT 59.510 40.909 0.00 0.00 0.00 2.66
321 322 2.088423 TGCACAAACTCGGTCAAACTT 58.912 42.857 0.00 0.00 0.00 2.66
322 323 1.745232 TGCACAAACTCGGTCAAACT 58.255 45.000 0.00 0.00 0.00 2.66
323 324 2.553079 TTGCACAAACTCGGTCAAAC 57.447 45.000 0.00 0.00 0.00 2.93
324 325 3.057174 ACTTTTGCACAAACTCGGTCAAA 60.057 39.130 0.00 0.00 0.00 2.69
325 326 2.490115 ACTTTTGCACAAACTCGGTCAA 59.510 40.909 0.00 0.00 0.00 3.18
326 327 2.088423 ACTTTTGCACAAACTCGGTCA 58.912 42.857 0.00 0.00 0.00 4.02
327 328 2.844122 ACTTTTGCACAAACTCGGTC 57.156 45.000 0.00 0.00 0.00 4.79
328 329 5.703592 TGATATACTTTTGCACAAACTCGGT 59.296 36.000 0.00 0.00 0.00 4.69
329 330 6.176975 TGATATACTTTTGCACAAACTCGG 57.823 37.500 0.00 0.00 0.00 4.63
330 331 7.750458 ACATTGATATACTTTTGCACAAACTCG 59.250 33.333 0.00 0.00 0.00 4.18
331 332 8.970691 ACATTGATATACTTTTGCACAAACTC 57.029 30.769 0.00 0.00 0.00 3.01
332 333 9.762933 AAACATTGATATACTTTTGCACAAACT 57.237 25.926 0.00 0.00 0.00 2.66
473 474 6.652481 TGCCTTCAACTTTGTTGAAAATTCAA 59.348 30.769 21.21 4.52 44.31 2.69
474 475 6.091986 GTGCCTTCAACTTTGTTGAAAATTCA 59.908 34.615 21.21 14.82 37.89 2.57
475 476 6.091986 TGTGCCTTCAACTTTGTTGAAAATTC 59.908 34.615 21.21 14.39 37.89 2.17
476 477 5.936956 TGTGCCTTCAACTTTGTTGAAAATT 59.063 32.000 21.21 0.00 37.89 1.82
477 478 5.351189 GTGTGCCTTCAACTTTGTTGAAAAT 59.649 36.000 21.21 0.00 37.89 1.82
478 479 4.688413 GTGTGCCTTCAACTTTGTTGAAAA 59.312 37.500 21.21 11.02 37.89 2.29
479 480 4.021544 AGTGTGCCTTCAACTTTGTTGAAA 60.022 37.500 21.21 8.86 37.89 2.69
480 481 3.509575 AGTGTGCCTTCAACTTTGTTGAA 59.490 39.130 20.15 20.15 36.98 2.69
481 482 3.088532 AGTGTGCCTTCAACTTTGTTGA 58.911 40.909 8.81 8.81 0.00 3.18
482 483 3.129287 AGAGTGTGCCTTCAACTTTGTTG 59.871 43.478 4.25 4.25 0.00 3.33
483 484 3.356290 AGAGTGTGCCTTCAACTTTGTT 58.644 40.909 0.00 0.00 0.00 2.83
484 485 3.004752 AGAGTGTGCCTTCAACTTTGT 57.995 42.857 0.00 0.00 0.00 2.83
485 486 4.142403 TGAAAGAGTGTGCCTTCAACTTTG 60.142 41.667 0.00 0.00 31.78 2.77
486 487 4.016444 TGAAAGAGTGTGCCTTCAACTTT 58.984 39.130 0.00 0.00 33.07 2.66
487 488 3.620488 TGAAAGAGTGTGCCTTCAACTT 58.380 40.909 0.00 0.00 0.00 2.66
488 489 3.281727 TGAAAGAGTGTGCCTTCAACT 57.718 42.857 0.00 0.00 0.00 3.16
489 490 4.370364 TTTGAAAGAGTGTGCCTTCAAC 57.630 40.909 0.00 0.00 0.00 3.18
490 491 5.167845 GTTTTTGAAAGAGTGTGCCTTCAA 58.832 37.500 0.00 0.00 0.00 2.69
491 492 4.674101 CGTTTTTGAAAGAGTGTGCCTTCA 60.674 41.667 0.00 0.00 0.00 3.02
492 493 3.791353 CGTTTTTGAAAGAGTGTGCCTTC 59.209 43.478 0.00 0.00 0.00 3.46
493 494 3.442273 TCGTTTTTGAAAGAGTGTGCCTT 59.558 39.130 0.00 0.00 0.00 4.35
494 495 3.013921 TCGTTTTTGAAAGAGTGTGCCT 58.986 40.909 0.00 0.00 0.00 4.75
495 496 3.414549 TCGTTTTTGAAAGAGTGTGCC 57.585 42.857 0.00 0.00 0.00 5.01
496 497 4.207019 CCATTCGTTTTTGAAAGAGTGTGC 59.793 41.667 0.00 0.00 0.00 4.57
497 498 5.577835 TCCATTCGTTTTTGAAAGAGTGTG 58.422 37.500 0.00 0.00 0.00 3.82
498 499 5.357032 ACTCCATTCGTTTTTGAAAGAGTGT 59.643 36.000 10.08 0.00 40.81 3.55
499 500 5.821204 ACTCCATTCGTTTTTGAAAGAGTG 58.179 37.500 10.08 0.00 40.81 3.51
500 501 6.017357 GGTACTCCATTCGTTTTTGAAAGAGT 60.017 38.462 13.51 13.51 42.89 3.24
501 502 6.204882 AGGTACTCCATTCGTTTTTGAAAGAG 59.795 38.462 0.00 5.74 37.87 2.85
502 503 6.059484 AGGTACTCCATTCGTTTTTGAAAGA 58.941 36.000 0.00 0.00 35.89 2.52
503 504 6.313744 AGGTACTCCATTCGTTTTTGAAAG 57.686 37.500 0.00 0.00 35.89 2.62
520 521 1.834263 GCTGGGACATTGAGAGGTACT 59.166 52.381 0.00 0.00 39.70 2.73
521 522 1.834263 AGCTGGGACATTGAGAGGTAC 59.166 52.381 0.00 0.00 38.20 3.34
522 523 2.254152 AGCTGGGACATTGAGAGGTA 57.746 50.000 0.00 0.00 38.20 3.08
531 532 1.559682 ACAATTCGGTAGCTGGGACAT 59.440 47.619 0.00 0.00 38.20 3.06
542 543 1.512156 GCCAACACGGACAATTCGGT 61.512 55.000 0.00 0.00 36.56 4.69
671 695 0.890542 AGCCATGTGTGCGTGAACAT 60.891 50.000 0.00 0.00 37.50 2.71
675 699 2.358615 GGAGCCATGTGTGCGTGA 60.359 61.111 0.00 0.00 33.58 4.35
699 723 0.108186 CACCACTTCCATGCTAGCGA 60.108 55.000 10.77 0.00 0.00 4.93
877 971 2.099592 TCGCGTTCGATTGGGTATACTT 59.900 45.455 5.77 0.00 40.21 2.24
887 981 0.803117 TCTCTGACTCGCGTTCGATT 59.197 50.000 5.77 0.00 44.56 3.34
1208 1432 0.886490 ACGTGTCGTAGAAGGTCGGT 60.886 55.000 0.00 0.00 39.69 4.69
1214 1438 0.456312 GGCAGGACGTGTCGTAGAAG 60.456 60.000 0.00 0.00 41.37 2.85
1249 1473 1.405933 CCATGACGCCACTCTTGATGA 60.406 52.381 0.00 0.00 0.00 2.92
1363 1592 1.451504 CATTGCCGGCTATCAGGGA 59.548 57.895 29.70 0.07 0.00 4.20
1364 1593 1.601759 CCATTGCCGGCTATCAGGG 60.602 63.158 29.70 18.78 0.00 4.45
1379 1608 1.076777 GCACCCTGGTACATGCCAT 60.077 57.895 0.00 0.00 36.01 4.40
1380 1609 2.354729 GCACCCTGGTACATGCCA 59.645 61.111 0.00 0.00 36.01 4.92
1381 1610 1.750399 CTGCACCCTGGTACATGCC 60.750 63.158 0.00 0.00 40.73 4.40
1382 1611 1.750399 CCTGCACCCTGGTACATGC 60.750 63.158 0.00 0.00 41.68 4.06
1384 1613 1.500783 AAGCCTGCACCCTGGTACAT 61.501 55.000 0.00 0.00 38.20 2.29
1385 1614 1.715019 AAAGCCTGCACCCTGGTACA 61.715 55.000 0.00 0.00 32.98 2.90
1386 1615 0.326927 TAAAGCCTGCACCCTGGTAC 59.673 55.000 0.00 0.00 32.98 3.34
1387 1616 1.068948 TTAAAGCCTGCACCCTGGTA 58.931 50.000 0.00 0.00 32.98 3.25
1388 1617 0.539669 GTTAAAGCCTGCACCCTGGT 60.540 55.000 0.00 0.00 32.98 4.00
1389 1618 1.250840 GGTTAAAGCCTGCACCCTGG 61.251 60.000 0.00 0.00 0.00 4.45
1390 1619 0.539438 TGGTTAAAGCCTGCACCCTG 60.539 55.000 0.00 0.00 0.00 4.45
1391 1620 0.409484 ATGGTTAAAGCCTGCACCCT 59.591 50.000 0.00 0.00 0.00 4.34
1392 1621 0.532115 CATGGTTAAAGCCTGCACCC 59.468 55.000 0.00 0.00 0.00 4.61
1393 1622 0.108662 GCATGGTTAAAGCCTGCACC 60.109 55.000 9.25 0.00 34.82 5.01
1396 1625 1.517039 GCGCATGGTTAAAGCCTGC 60.517 57.895 0.30 5.43 32.88 4.85
1397 1626 1.226379 CGCGCATGGTTAAAGCCTG 60.226 57.895 8.75 0.00 0.00 4.85
1400 1629 1.869132 CAGCGCGCATGGTTAAAGC 60.869 57.895 35.10 0.00 0.00 3.51
1405 1671 2.331893 TAAAGCAGCGCGCATGGTT 61.332 52.632 35.10 31.39 46.13 3.67
1414 1680 4.026228 CACATCACATAGAGTAAAGCAGCG 60.026 45.833 0.00 0.00 0.00 5.18
1426 1692 1.306148 CAGCCCTGCACATCACATAG 58.694 55.000 0.00 0.00 0.00 2.23
1614 1880 4.097437 TCGTTAGATGACATTCTTACGGCT 59.903 41.667 17.86 2.13 44.52 5.52
1626 1892 4.746611 TGATGTGCATGATCGTTAGATGAC 59.253 41.667 0.00 0.00 37.19 3.06
1745 2058 2.787249 CCGCCTCGTTTGCATCTG 59.213 61.111 0.00 0.00 0.00 2.90
1989 2316 3.706373 TCCAGGTTCGCCAGGCTC 61.706 66.667 10.54 0.00 43.07 4.70
2258 2591 4.514441 GGCTAGTATGCAGTAACTCGTCTA 59.486 45.833 2.69 0.00 34.04 2.59
2273 2610 0.100682 CGTGTCGTGCTGGCTAGTAT 59.899 55.000 0.00 0.00 0.00 2.12
2280 2621 2.050714 ACGTACGTGTCGTGCTGG 60.051 61.111 22.14 0.00 41.39 4.85
2286 2627 4.027945 CCTTATTCATTCACGTACGTGTCG 60.028 45.833 38.70 28.87 45.55 4.35
2287 2628 4.259690 GCCTTATTCATTCACGTACGTGTC 60.260 45.833 38.70 15.80 45.55 3.67
2288 2629 3.615496 GCCTTATTCATTCACGTACGTGT 59.385 43.478 38.70 25.16 45.55 4.49
2290 2631 3.192466 GGCCTTATTCATTCACGTACGT 58.808 45.455 16.72 16.72 0.00 3.57
2350 2706 5.972973 TGCTACTCGTACATAAAATACACGG 59.027 40.000 0.00 0.00 33.59 4.94
2571 4145 2.223377 CCTAAAATAATCGAGCACGGCC 59.777 50.000 3.11 0.00 40.21 6.13
2609 4185 6.238759 CGAGTTTTCTCTTTTCTCCCAACATT 60.239 38.462 0.00 0.00 44.16 2.71
2611 4187 4.574828 CGAGTTTTCTCTTTTCTCCCAACA 59.425 41.667 0.00 0.00 44.16 3.33
2612 4188 4.814771 TCGAGTTTTCTCTTTTCTCCCAAC 59.185 41.667 0.00 0.00 44.16 3.77
2613 4189 5.031066 TCGAGTTTTCTCTTTTCTCCCAA 57.969 39.130 0.00 0.00 44.16 4.12
2615 4191 4.884247 TCTCGAGTTTTCTCTTTTCTCCC 58.116 43.478 13.13 0.00 44.16 4.30
2616 4192 5.404066 CACTCTCGAGTTTTCTCTTTTCTCC 59.596 44.000 13.13 0.00 44.16 3.71
2618 4194 5.751028 CACACTCTCGAGTTTTCTCTTTTCT 59.249 40.000 13.13 0.00 44.16 2.52
2619 4195 5.749109 TCACACTCTCGAGTTTTCTCTTTTC 59.251 40.000 13.13 0.00 44.16 2.29
2620 4196 5.661458 TCACACTCTCGAGTTTTCTCTTTT 58.339 37.500 13.13 0.00 44.16 2.27
2621 4197 5.263968 TCACACTCTCGAGTTTTCTCTTT 57.736 39.130 13.13 0.00 44.16 2.52
2622 4198 4.920640 TCACACTCTCGAGTTTTCTCTT 57.079 40.909 13.13 0.00 44.16 2.85
2623 4199 4.339814 AGTTCACACTCTCGAGTTTTCTCT 59.660 41.667 13.13 0.73 44.16 3.10
2673 4249 7.365384 CCATCTTCTGCAGTGGGTGATATATAT 60.365 40.741 14.67 0.00 0.00 0.86
2709 4285 2.434884 ATCGGTCCAGCAGCAACG 60.435 61.111 0.00 0.00 0.00 4.10
2758 4347 6.929625 TGTGGAAAATTTTGAGAAGAACACA 58.070 32.000 8.47 7.45 0.00 3.72
2767 4356 8.707938 AAGAGAAAGTTGTGGAAAATTTTGAG 57.292 30.769 8.47 0.00 0.00 3.02
2768 4357 9.500785 AAAAGAGAAAGTTGTGGAAAATTTTGA 57.499 25.926 8.47 0.00 0.00 2.69
2769 4358 9.759259 GAAAAGAGAAAGTTGTGGAAAATTTTG 57.241 29.630 8.47 0.00 0.00 2.44
2770 4359 8.946085 GGAAAAGAGAAAGTTGTGGAAAATTTT 58.054 29.630 2.28 2.28 0.00 1.82
2771 4360 8.321353 AGGAAAAGAGAAAGTTGTGGAAAATTT 58.679 29.630 0.00 0.00 0.00 1.82
2772 4361 7.851228 AGGAAAAGAGAAAGTTGTGGAAAATT 58.149 30.769 0.00 0.00 0.00 1.82
2773 4362 7.423844 AGGAAAAGAGAAAGTTGTGGAAAAT 57.576 32.000 0.00 0.00 0.00 1.82
2782 4385 9.778741 AACAAAGAAAAAGGAAAAGAGAAAGTT 57.221 25.926 0.00 0.00 0.00 2.66
2789 4392 8.356000 TGTCCTAACAAAGAAAAAGGAAAAGA 57.644 30.769 0.00 0.00 38.06 2.52
2900 5349 7.279981 GTCAATGTTTAAAAAGTTTGGCTCCTT 59.720 33.333 0.00 0.00 0.00 3.36
2902 5351 6.536941 TGTCAATGTTTAAAAAGTTTGGCTCC 59.463 34.615 0.00 0.00 0.00 4.70
2943 5394 9.621629 AATCCTTTGGTATGTAATTGTCGATAA 57.378 29.630 0.00 0.00 0.00 1.75
2997 5449 5.663456 TGAACATTTACAGTACCGGATACC 58.337 41.667 9.46 0.00 33.85 2.73
3111 5563 9.975218 AGGAGGTTGTACTTGTCATTATTTAAT 57.025 29.630 0.00 0.00 0.00 1.40
3112 5564 9.444600 GAGGAGGTTGTACTTGTCATTATTTAA 57.555 33.333 0.00 0.00 0.00 1.52
3113 5565 7.762615 CGAGGAGGTTGTACTTGTCATTATTTA 59.237 37.037 0.00 0.00 0.00 1.40
3114 5566 6.594159 CGAGGAGGTTGTACTTGTCATTATTT 59.406 38.462 0.00 0.00 0.00 1.40
3115 5567 6.070995 TCGAGGAGGTTGTACTTGTCATTATT 60.071 38.462 0.00 0.00 0.00 1.40
3116 5568 5.421056 TCGAGGAGGTTGTACTTGTCATTAT 59.579 40.000 0.00 0.00 0.00 1.28
3117 5569 4.768448 TCGAGGAGGTTGTACTTGTCATTA 59.232 41.667 0.00 0.00 0.00 1.90
3118 5570 3.576982 TCGAGGAGGTTGTACTTGTCATT 59.423 43.478 0.00 0.00 0.00 2.57
3119 5571 3.162666 TCGAGGAGGTTGTACTTGTCAT 58.837 45.455 0.00 0.00 0.00 3.06
3120 5572 2.589720 TCGAGGAGGTTGTACTTGTCA 58.410 47.619 0.00 0.00 0.00 3.58
3121 5573 3.512680 CATCGAGGAGGTTGTACTTGTC 58.487 50.000 0.00 0.00 0.00 3.18
3122 5574 2.233922 CCATCGAGGAGGTTGTACTTGT 59.766 50.000 0.00 0.00 41.22 3.16
3123 5575 2.496070 TCCATCGAGGAGGTTGTACTTG 59.504 50.000 0.00 0.00 43.07 3.16
3124 5576 2.816411 TCCATCGAGGAGGTTGTACTT 58.184 47.619 0.00 0.00 43.07 2.24
3125 5577 2.526888 TCCATCGAGGAGGTTGTACT 57.473 50.000 0.00 0.00 43.07 2.73
3134 5586 1.612146 TGGCCAAGTCCATCGAGGA 60.612 57.895 0.61 0.00 46.75 3.71
3135 5587 1.153289 CTGGCCAAGTCCATCGAGG 60.153 63.158 7.01 0.00 35.22 4.63
3136 5588 1.817099 GCTGGCCAAGTCCATCGAG 60.817 63.158 7.01 0.00 35.22 4.04
3137 5589 2.268920 GCTGGCCAAGTCCATCGA 59.731 61.111 7.01 0.00 35.22 3.59
3138 5590 2.825836 GGCTGGCCAAGTCCATCG 60.826 66.667 7.01 0.00 35.22 3.84
3139 5591 2.356278 TGGCTGGCCAAGTCCATC 59.644 61.111 12.27 0.00 44.12 3.51
3150 5602 4.181010 CATCGGGGAGGTGGCTGG 62.181 72.222 0.00 0.00 0.00 4.85
3151 5603 4.181010 CCATCGGGGAGGTGGCTG 62.181 72.222 0.00 0.00 45.46 4.85
3162 5614 2.505982 CAGCTACCCACCCATCGG 59.494 66.667 0.00 0.00 0.00 4.18
3163 5615 2.203070 GCAGCTACCCACCCATCG 60.203 66.667 0.00 0.00 0.00 3.84
3164 5616 1.153086 CTGCAGCTACCCACCCATC 60.153 63.158 0.00 0.00 0.00 3.51
3165 5617 1.925455 ACTGCAGCTACCCACCCAT 60.925 57.895 15.27 0.00 0.00 4.00
3166 5618 2.529136 ACTGCAGCTACCCACCCA 60.529 61.111 15.27 0.00 0.00 4.51
3167 5619 2.045926 CACTGCAGCTACCCACCC 60.046 66.667 15.27 0.00 0.00 4.61
3168 5620 2.747855 GCACTGCAGCTACCCACC 60.748 66.667 15.27 0.00 0.00 4.61
3169 5621 3.121030 CGCACTGCAGCTACCCAC 61.121 66.667 15.27 0.00 0.00 4.61
3170 5622 4.393155 CCGCACTGCAGCTACCCA 62.393 66.667 15.27 0.00 0.00 4.51
3173 5625 3.793144 GTGCCGCACTGCAGCTAC 61.793 66.667 15.27 1.97 43.02 3.58
3179 5631 4.332637 CTTGTGGTGCCGCACTGC 62.333 66.667 22.41 15.32 36.07 4.40
3180 5632 2.901840 ACTTGTGGTGCCGCACTG 60.902 61.111 22.41 10.46 36.07 3.66
3181 5633 2.901840 CACTTGTGGTGCCGCACT 60.902 61.111 22.41 0.00 39.22 4.40
3182 5634 3.964875 CCACTTGTGGTGCCGCAC 61.965 66.667 15.50 15.50 44.08 5.34
3183 5635 4.182433 TCCACTTGTGGTGCCGCA 62.182 61.111 18.05 0.00 44.08 5.69
3184 5636 3.660111 GTCCACTTGTGGTGCCGC 61.660 66.667 18.05 0.00 44.08 6.53
3185 5637 3.345808 CGTCCACTTGTGGTGCCG 61.346 66.667 18.05 14.56 44.08 5.69
3186 5638 2.110213 TCGTCCACTTGTGGTGCC 59.890 61.111 18.05 7.89 44.08 5.01
3187 5639 2.594962 CGTCGTCCACTTGTGGTGC 61.595 63.158 18.05 11.81 44.08 5.01
3188 5640 0.319555 ATCGTCGTCCACTTGTGGTG 60.320 55.000 18.05 12.50 44.96 4.17
3189 5641 0.319555 CATCGTCGTCCACTTGTGGT 60.320 55.000 18.05 0.00 0.00 4.16
3190 5642 1.626654 GCATCGTCGTCCACTTGTGG 61.627 60.000 13.24 13.24 0.00 4.17
3191 5643 0.943835 TGCATCGTCGTCCACTTGTG 60.944 55.000 0.00 0.00 0.00 3.33
3192 5644 0.667487 CTGCATCGTCGTCCACTTGT 60.667 55.000 0.00 0.00 0.00 3.16
3193 5645 1.354337 CCTGCATCGTCGTCCACTTG 61.354 60.000 0.00 0.00 0.00 3.16
3194 5646 1.079819 CCTGCATCGTCGTCCACTT 60.080 57.895 0.00 0.00 0.00 3.16
3195 5647 2.573869 CCTGCATCGTCGTCCACT 59.426 61.111 0.00 0.00 0.00 4.00
3196 5648 2.279502 TAGCCTGCATCGTCGTCCAC 62.280 60.000 0.00 0.00 0.00 4.02
3197 5649 1.391933 ATAGCCTGCATCGTCGTCCA 61.392 55.000 0.00 0.00 0.00 4.02
3198 5650 0.596577 TATAGCCTGCATCGTCGTCC 59.403 55.000 0.00 0.00 0.00 4.79
3199 5651 2.162608 AGATATAGCCTGCATCGTCGTC 59.837 50.000 0.00 0.00 0.00 4.20
3200 5652 2.163509 AGATATAGCCTGCATCGTCGT 58.836 47.619 0.00 0.00 0.00 4.34
3201 5653 2.929531 AGATATAGCCTGCATCGTCG 57.070 50.000 0.00 0.00 0.00 5.12
3202 5654 3.697045 ACCTAGATATAGCCTGCATCGTC 59.303 47.826 0.00 0.00 0.00 4.20
3203 5655 3.697045 GACCTAGATATAGCCTGCATCGT 59.303 47.826 0.00 0.00 0.00 3.73
3204 5656 3.951037 AGACCTAGATATAGCCTGCATCG 59.049 47.826 0.00 0.00 0.00 3.84
3205 5657 4.441356 GCAGACCTAGATATAGCCTGCATC 60.441 50.000 23.40 5.73 39.61 3.91
3206 5658 3.450457 GCAGACCTAGATATAGCCTGCAT 59.550 47.826 23.40 0.00 39.61 3.96
3207 5659 2.828520 GCAGACCTAGATATAGCCTGCA 59.171 50.000 23.40 0.00 39.61 4.41
3208 5660 2.828520 TGCAGACCTAGATATAGCCTGC 59.171 50.000 22.40 22.40 39.93 4.85
3209 5661 3.446873 CCTGCAGACCTAGATATAGCCTG 59.553 52.174 17.39 9.36 0.00 4.85
3210 5662 3.335183 TCCTGCAGACCTAGATATAGCCT 59.665 47.826 17.39 0.00 0.00 4.58
3211 5663 3.699038 CTCCTGCAGACCTAGATATAGCC 59.301 52.174 17.39 0.00 0.00 3.93
3212 5664 4.340617 ACTCCTGCAGACCTAGATATAGC 58.659 47.826 17.39 0.00 0.00 2.97
3213 5665 7.398829 TCTTACTCCTGCAGACCTAGATATAG 58.601 42.308 17.39 1.39 0.00 1.31
3214 5666 7.017750 ACTCTTACTCCTGCAGACCTAGATATA 59.982 40.741 17.39 0.00 0.00 0.86
3215 5667 6.183361 ACTCTTACTCCTGCAGACCTAGATAT 60.183 42.308 17.39 0.00 0.00 1.63
3216 5668 5.132985 ACTCTTACTCCTGCAGACCTAGATA 59.867 44.000 17.39 0.00 0.00 1.98
3217 5669 4.079443 ACTCTTACTCCTGCAGACCTAGAT 60.079 45.833 17.39 0.00 0.00 1.98
3218 5670 3.267291 ACTCTTACTCCTGCAGACCTAGA 59.733 47.826 17.39 9.92 0.00 2.43
3219 5671 3.626930 ACTCTTACTCCTGCAGACCTAG 58.373 50.000 17.39 9.39 0.00 3.02
3220 5672 3.622630 GACTCTTACTCCTGCAGACCTA 58.377 50.000 17.39 0.00 0.00 3.08
3221 5673 2.452505 GACTCTTACTCCTGCAGACCT 58.547 52.381 17.39 0.00 0.00 3.85
3222 5674 1.133407 CGACTCTTACTCCTGCAGACC 59.867 57.143 17.39 0.00 0.00 3.85
3223 5675 2.085320 TCGACTCTTACTCCTGCAGAC 58.915 52.381 17.39 0.00 0.00 3.51
3224 5676 2.360844 CTCGACTCTTACTCCTGCAGA 58.639 52.381 17.39 0.00 0.00 4.26
3225 5677 1.403679 CCTCGACTCTTACTCCTGCAG 59.596 57.143 6.78 6.78 0.00 4.41
3226 5678 1.004394 TCCTCGACTCTTACTCCTGCA 59.996 52.381 0.00 0.00 0.00 4.41
3227 5679 1.673920 CTCCTCGACTCTTACTCCTGC 59.326 57.143 0.00 0.00 0.00 4.85
3228 5680 2.940410 GTCTCCTCGACTCTTACTCCTG 59.060 54.545 0.00 0.00 39.61 3.86
3229 5681 2.572556 TGTCTCCTCGACTCTTACTCCT 59.427 50.000 0.00 0.00 43.25 3.69
3230 5682 2.988570 TGTCTCCTCGACTCTTACTCC 58.011 52.381 0.00 0.00 43.25 3.85
3231 5683 5.373981 TTTTGTCTCCTCGACTCTTACTC 57.626 43.478 0.00 0.00 43.25 2.59
3232 5684 5.535406 TCTTTTTGTCTCCTCGACTCTTACT 59.465 40.000 0.00 0.00 43.25 2.24
3233 5685 5.770417 TCTTTTTGTCTCCTCGACTCTTAC 58.230 41.667 0.00 0.00 43.25 2.34
3234 5686 6.591750 ATCTTTTTGTCTCCTCGACTCTTA 57.408 37.500 0.00 0.00 43.25 2.10
3235 5687 4.939052 TCTTTTTGTCTCCTCGACTCTT 57.061 40.909 0.00 0.00 43.25 2.85
3236 5688 6.783708 ATATCTTTTTGTCTCCTCGACTCT 57.216 37.500 0.00 0.00 43.25 3.24
3237 5689 7.835634 AAATATCTTTTTGTCTCCTCGACTC 57.164 36.000 0.00 0.00 43.25 3.36
3238 5690 9.892130 ATTAAATATCTTTTTGTCTCCTCGACT 57.108 29.630 0.00 0.00 43.25 4.18
3239 5691 9.922305 CATTAAATATCTTTTTGTCTCCTCGAC 57.078 33.333 0.00 0.00 43.14 4.20
3240 5692 9.884636 TCATTAAATATCTTTTTGTCTCCTCGA 57.115 29.630 0.00 0.00 0.00 4.04
3258 5710 9.118300 GAGGAGACTTGTGAATCATCATTAAAT 57.882 33.333 0.00 0.00 44.43 1.40
3259 5711 7.278646 CGAGGAGACTTGTGAATCATCATTAAA 59.721 37.037 0.00 0.00 44.43 1.52
3260 5712 6.758416 CGAGGAGACTTGTGAATCATCATTAA 59.242 38.462 0.00 0.00 44.43 1.40
3261 5713 6.096846 TCGAGGAGACTTGTGAATCATCATTA 59.903 38.462 0.00 0.00 44.43 1.90
3262 5714 5.105187 TCGAGGAGACTTGTGAATCATCATT 60.105 40.000 0.00 0.00 44.43 2.57
3263 5715 4.403752 TCGAGGAGACTTGTGAATCATCAT 59.596 41.667 0.00 0.00 44.43 2.45
3264 5716 3.763897 TCGAGGAGACTTGTGAATCATCA 59.236 43.478 0.00 0.00 44.43 3.07
3265 5717 4.358851 CTCGAGGAGACTTGTGAATCATC 58.641 47.826 3.91 0.00 44.43 2.92
3266 5718 3.131933 CCTCGAGGAGACTTGTGAATCAT 59.868 47.826 28.21 0.00 44.43 2.45
3267 5719 2.493675 CCTCGAGGAGACTTGTGAATCA 59.506 50.000 28.21 0.00 44.43 2.57
3268 5720 2.755655 TCCTCGAGGAGACTTGTGAATC 59.244 50.000 30.49 0.00 44.43 2.52
3269 5721 2.808919 TCCTCGAGGAGACTTGTGAAT 58.191 47.619 30.49 0.00 44.43 2.57
3270 5722 2.287977 TCCTCGAGGAGACTTGTGAA 57.712 50.000 30.49 3.84 44.43 3.18
3280 5732 3.140332 TCCCATTCTTATCTCCTCGAGGA 59.860 47.826 31.67 31.67 43.08 3.71
3281 5733 3.501349 TCCCATTCTTATCTCCTCGAGG 58.499 50.000 26.32 26.32 0.00 4.63
3282 5734 4.021544 CCTTCCCATTCTTATCTCCTCGAG 60.022 50.000 5.13 5.13 0.00 4.04
3283 5735 3.898123 CCTTCCCATTCTTATCTCCTCGA 59.102 47.826 0.00 0.00 0.00 4.04
3284 5736 3.898123 TCCTTCCCATTCTTATCTCCTCG 59.102 47.826 0.00 0.00 0.00 4.63
3285 5737 4.262851 GCTCCTTCCCATTCTTATCTCCTC 60.263 50.000 0.00 0.00 0.00 3.71
3286 5738 3.650461 GCTCCTTCCCATTCTTATCTCCT 59.350 47.826 0.00 0.00 0.00 3.69
3287 5739 3.650461 AGCTCCTTCCCATTCTTATCTCC 59.350 47.826 0.00 0.00 0.00 3.71
3288 5740 4.972751 AGCTCCTTCCCATTCTTATCTC 57.027 45.455 0.00 0.00 0.00 2.75
3289 5741 4.141298 CCAAGCTCCTTCCCATTCTTATCT 60.141 45.833 0.00 0.00 0.00 1.98
3290 5742 4.140536 CCAAGCTCCTTCCCATTCTTATC 58.859 47.826 0.00 0.00 0.00 1.75
3291 5743 3.788142 TCCAAGCTCCTTCCCATTCTTAT 59.212 43.478 0.00 0.00 0.00 1.73
3292 5744 3.189606 TCCAAGCTCCTTCCCATTCTTA 58.810 45.455 0.00 0.00 0.00 2.10
3293 5745 1.995542 TCCAAGCTCCTTCCCATTCTT 59.004 47.619 0.00 0.00 0.00 2.52
3294 5746 1.563410 CTCCAAGCTCCTTCCCATTCT 59.437 52.381 0.00 0.00 0.00 2.40
3295 5747 1.283321 ACTCCAAGCTCCTTCCCATTC 59.717 52.381 0.00 0.00 0.00 2.67
3296 5748 1.376649 ACTCCAAGCTCCTTCCCATT 58.623 50.000 0.00 0.00 0.00 3.16
3297 5749 2.270434 TACTCCAAGCTCCTTCCCAT 57.730 50.000 0.00 0.00 0.00 4.00
3298 5750 2.038863 TTACTCCAAGCTCCTTCCCA 57.961 50.000 0.00 0.00 0.00 4.37
3299 5751 3.546724 GAATTACTCCAAGCTCCTTCCC 58.453 50.000 0.00 0.00 0.00 3.97
3300 5752 3.546724 GGAATTACTCCAAGCTCCTTCC 58.453 50.000 0.00 0.00 44.67 3.46
3311 5763 4.625607 ATCCCGAATGAGGAATTACTCC 57.374 45.455 15.31 0.00 45.81 3.85
3312 5764 6.166982 CCTAATCCCGAATGAGGAATTACTC 58.833 44.000 11.06 11.06 38.21 2.59
3313 5765 5.013183 CCCTAATCCCGAATGAGGAATTACT 59.987 44.000 0.00 0.00 38.21 2.24
3314 5766 5.012768 TCCCTAATCCCGAATGAGGAATTAC 59.987 44.000 3.34 0.00 38.21 1.89
3315 5767 5.159637 TCCCTAATCCCGAATGAGGAATTA 58.840 41.667 3.34 0.00 38.21 1.40
3316 5768 3.980698 TCCCTAATCCCGAATGAGGAATT 59.019 43.478 3.34 0.00 38.21 2.17
3317 5769 3.598264 TCCCTAATCCCGAATGAGGAAT 58.402 45.455 3.34 0.00 38.21 3.01
3318 5770 3.054779 TCCCTAATCCCGAATGAGGAA 57.945 47.619 3.34 0.00 38.21 3.36
3319 5771 2.787339 TCCCTAATCCCGAATGAGGA 57.213 50.000 3.34 0.00 38.21 3.71
3320 5772 3.857157 TTTCCCTAATCCCGAATGAGG 57.143 47.619 0.00 0.00 35.85 3.86
3321 5773 6.064717 AGAAATTTCCCTAATCCCGAATGAG 58.935 40.000 14.61 0.00 0.00 2.90
3322 5774 6.013554 AGAAATTTCCCTAATCCCGAATGA 57.986 37.500 14.61 0.00 0.00 2.57
3323 5775 6.715347 AAGAAATTTCCCTAATCCCGAATG 57.285 37.500 14.61 0.00 0.00 2.67
3324 5776 7.398904 TCAAAAGAAATTTCCCTAATCCCGAAT 59.601 33.333 14.61 0.00 0.00 3.34
3325 5777 6.722129 TCAAAAGAAATTTCCCTAATCCCGAA 59.278 34.615 14.61 0.00 0.00 4.30
3326 5778 6.249951 TCAAAAGAAATTTCCCTAATCCCGA 58.750 36.000 14.61 0.00 0.00 5.14
3327 5779 6.524101 TCAAAAGAAATTTCCCTAATCCCG 57.476 37.500 14.61 0.00 0.00 5.14
3370 5822 8.993424 CCCATAAGTATATACCCTATCAGCTTT 58.007 37.037 9.32 0.00 0.00 3.51
3371 5823 7.071321 GCCCATAAGTATATACCCTATCAGCTT 59.929 40.741 9.32 0.00 0.00 3.74
3372 5824 6.555360 GCCCATAAGTATATACCCTATCAGCT 59.445 42.308 9.32 0.00 0.00 4.24
3373 5825 6.239629 GGCCCATAAGTATATACCCTATCAGC 60.240 46.154 9.32 10.44 0.00 4.26
3374 5826 6.015350 CGGCCCATAAGTATATACCCTATCAG 60.015 46.154 9.32 2.85 0.00 2.90
3375 5827 5.836898 CGGCCCATAAGTATATACCCTATCA 59.163 44.000 9.32 0.00 0.00 2.15
3376 5828 5.245526 CCGGCCCATAAGTATATACCCTATC 59.754 48.000 9.32 0.00 0.00 2.08
3377 5829 5.152934 CCGGCCCATAAGTATATACCCTAT 58.847 45.833 9.32 4.57 0.00 2.57
3378 5830 4.549668 CCGGCCCATAAGTATATACCCTA 58.450 47.826 9.32 2.40 0.00 3.53
3379 5831 3.381335 CCGGCCCATAAGTATATACCCT 58.619 50.000 9.32 0.13 0.00 4.34
3380 5832 2.436911 CCCGGCCCATAAGTATATACCC 59.563 54.545 9.32 1.15 0.00 3.69
3381 5833 3.109928 ACCCGGCCCATAAGTATATACC 58.890 50.000 9.32 0.00 0.00 2.73
3382 5834 3.516700 ACACCCGGCCCATAAGTATATAC 59.483 47.826 4.60 4.60 0.00 1.47
3383 5835 3.770933 GACACCCGGCCCATAAGTATATA 59.229 47.826 0.00 0.00 0.00 0.86
3384 5836 2.570302 GACACCCGGCCCATAAGTATAT 59.430 50.000 0.00 0.00 0.00 0.86
3385 5837 1.972795 GACACCCGGCCCATAAGTATA 59.027 52.381 0.00 0.00 0.00 1.47
3386 5838 0.763035 GACACCCGGCCCATAAGTAT 59.237 55.000 0.00 0.00 0.00 2.12
3387 5839 1.678598 CGACACCCGGCCCATAAGTA 61.679 60.000 0.00 0.00 33.91 2.24
3388 5840 2.995547 GACACCCGGCCCATAAGT 59.004 61.111 0.00 0.00 0.00 2.24
3389 5841 2.203015 CGACACCCGGCCCATAAG 60.203 66.667 0.00 0.00 33.91 1.73
3390 5842 3.004354 ACGACACCCGGCCCATAA 61.004 61.111 0.00 0.00 43.93 1.90
3391 5843 3.776781 CACGACACCCGGCCCATA 61.777 66.667 0.00 0.00 43.93 2.74
3395 5847 4.832608 GATCCACGACACCCGGCC 62.833 72.222 0.00 0.00 43.93 6.13
3396 5848 1.952102 TTAGATCCACGACACCCGGC 61.952 60.000 0.00 0.00 43.93 6.13
3436 5889 2.365941 GACCTTGCCTCTCCATACCTAC 59.634 54.545 0.00 0.00 0.00 3.18
3686 6139 0.985760 TGTGGGGCGTTACCAGTAAT 59.014 50.000 0.00 0.00 42.05 1.89
3742 6195 0.038251 CTCTGCACTGCAACGGTCTA 60.038 55.000 4.99 0.00 38.41 2.59
4104 6559 2.202570 CGTCGCTCGGAAATCGGT 60.203 61.111 0.00 0.00 39.77 4.69
4129 6584 1.202879 TCTGCCAAACACGGGATTTCT 60.203 47.619 0.00 0.00 0.00 2.52
4139 6594 3.231734 CAGATCGGTCTGCCAAACA 57.768 52.632 13.76 0.00 44.86 2.83
4261 6716 1.933181 CGATACATGGCGAGAAAAGCA 59.067 47.619 0.00 0.00 36.08 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.