AutoCloner

Multiple sequence alignment - TraesCS2B01G124800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G124800	chr2B	100.000	3162	0	0	1	3162	93140374	93137213	0.000000e+00	5840.0
1	TraesCS2B01G124800	chr2B	86.175	1396	130	34	992	2374	93689404	93688059	0.000000e+00	1450.0
2	TraesCS2B01G124800	chr2B	85.369	1408	165	25	992	2374	93639326	93637935	0.000000e+00	1421.0
3	TraesCS2B01G124800	chr2B	85.325	845	98	15	1545	2376	93446838	93446007	0.000000e+00	850.0
4	TraesCS2B01G124800	chr2B	79.285	1091	166	42	1309	2378	93700771	93699720	0.000000e+00	708.0
5	TraesCS2B01G124800	chr2B	83.421	760	95	15	2411	3162	93444089	93443353	0.000000e+00	676.0
6	TraesCS2B01G124800	chr2B	82.387	511	69	13	993	1484	93447337	93446829	2.920000e-115	425.0
7	TraesCS2B01G124800	chr2B	81.381	478	67	15	1031	1494	94224955	94224486	1.390000e-98	370.0
8	TraesCS2B01G124800	chr2B	85.763	295	22	9	352	646	93690006	93689732	8.580000e-76	294.0
9	TraesCS2B01G124800	chr2B	87.578	161	17	2	818	977	93689627	93689469	1.940000e-42	183.0
10	TraesCS2B01G124800	chr2B	88.189	127	9	4	853	977	93639513	93639391	2.540000e-31	147.0
11	TraesCS2B01G124800	chr2B	90.769	65	6	0	386	450	93453193	93453129	1.560000e-13	87.9
12	TraesCS2B01G124800	chr2B	94.643	56	1	2	643	698	93639635	93639582	5.620000e-13	86.1
13	TraesCS2B01G124800	chr2D	94.599	1870	82	11	1300	3162	59731313	59729456	0.000000e+00	2876.0
14	TraesCS2B01G124800	chr2D	86.351	1392	151	20	995	2374	60016185	60014821	0.000000e+00	1482.0
15	TraesCS2B01G124800	chr2D	83.659	869	115	11	1307	2167	59658163	59659012	0.000000e+00	793.0
16	TraesCS2B01G124800	chr2D	79.098	1086	172	34	1309	2378	60022926	60021880	0.000000e+00	697.0
17	TraesCS2B01G124800	chr2D	92.604	338	13	8	596	922	59731810	59731474	2.850000e-130	475.0
18	TraesCS2B01G124800	chr2D	86.572	283	19	9	364	646	60016796	60016533	8.580000e-76	294.0
19	TraesCS2B01G124800	chr2D	93.913	115	4	2	486	600	59734294	59734183	1.510000e-38	171.0
20	TraesCS2B01G124800	chr2D	93.750	48	2	1	1254	1301	59731386	59731340	1.570000e-08	71.3
21	TraesCS2B01G124800	chr2A	96.355	1509	51	4	992	2500	59728472	59726968	0.000000e+00	2479.0
22	TraesCS2B01G124800	chr2A	85.122	1398	142	21	992	2373	59933882	59932535	0.000000e+00	1369.0
23	TraesCS2B01G124800	chr2A	84.790	1407	140	27	992	2373	59873860	59872503	0.000000e+00	1345.0
24	TraesCS2B01G124800	chr2A	81.263	950	141	26	1307	2233	59587615	59588550	0.000000e+00	734.0
25	TraesCS2B01G124800	chr2A	91.765	425	8	7	339	756	59729240	59728836	1.650000e-157	566.0
26	TraesCS2B01G124800	chr2A	92.219	347	26	1	2496	2841	59726810	59726464	1.020000e-134	490.0
27	TraesCS2B01G124800	chr2A	89.796	343	30	4	1	342	59729737	59729399	4.840000e-118	435.0
28	TraesCS2B01G124800	chr2A	82.252	524	73	16	989	1499	59880764	59880248	4.840000e-118	435.0
29	TraesCS2B01G124800	chr2A	93.182	264	14	2	2899	3162	59726464	59726205	4.950000e-103	385.0
30	TraesCS2B01G124800	chr2A	82.222	405	42	15	818	1214	59587145	59587527	3.930000e-84	322.0
31	TraesCS2B01G124800	chr2A	85.852	311	22	11	339	646	59934488	59934197	8.520000e-81	311.0
32	TraesCS2B01G124800	chr2A	85.522	297	21	11	353	646	59874452	59874175	1.110000e-74	291.0
33	TraesCS2B01G124800	chr2A	94.702	151	8	0	847	997	59728664	59728514	5.270000e-58	235.0
34	TraesCS2B01G124800	chr2A	90.588	85	8	0	339	423	59730203	59730119	2.580000e-21	113.0
35	TraesCS2B01G124800	chr3A	74.449	227	58	0	15	241	534539128	534538902	7.220000e-17	99.0
36	TraesCS2B01G124800	chr3A	88.571	70	4	3	3083	3148	212699061	212698992	7.270000e-12	82.4
37	TraesCS2B01G124800	chr5B	88.608	79	4	5	3073	3148	307346570	307346646	1.210000e-14	91.6
38	TraesCS2B01G124800	chr5B	83.908	87	6	6	3074	3156	480050907	480050825	3.380000e-10	76.8
39	TraesCS2B01G124800	chr1D	86.842	76	6	2	3077	3148	356706192	356706267	7.270000e-12	82.4
40	TraesCS2B01G124800	chr1B	87.671	73	5	2	3080	3148	5200615	5200543	7.270000e-12	82.4
41	TraesCS2B01G124800	chr1B	88.571	70	5	1	3073	3139	543755797	543755866	7.270000e-12	82.4
42	TraesCS2B01G124800	chr6B	85.897	78	6	3	3075	3148	466718312	466718388	9.400000e-11	78.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G124800	chr2B	93137213	93140374	3161	True	5840.000000	5840	100.000000	1	3162	1	chr2B.!!$R1	3161
1	TraesCS2B01G124800	chr2B	93699720	93700771	1051	True	708.000000	708	79.285000	1309	2378	1	chr2B.!!$R3	1069
2	TraesCS2B01G124800	chr2B	93443353	93447337	3984	True	650.333333	850	83.711000	993	3162	3	chr2B.!!$R5	2169
3	TraesCS2B01G124800	chr2B	93688059	93690006	1947	True	642.333333	1450	86.505333	352	2374	3	chr2B.!!$R7	2022
4	TraesCS2B01G124800	chr2B	93637935	93639635	1700	True	551.366667	1421	89.400333	643	2374	3	chr2B.!!$R6	1731
5	TraesCS2B01G124800	chr2D	59729456	59734294	4838	True	898.325000	2876	93.716500	486	3162	4	chr2D.!!$R2	2676
6	TraesCS2B01G124800	chr2D	60014821	60016796	1975	True	888.000000	1482	86.461500	364	2374	2	chr2D.!!$R3	2010
7	TraesCS2B01G124800	chr2D	59658163	59659012	849	False	793.000000	793	83.659000	1307	2167	1	chr2D.!!$F1	860
8	TraesCS2B01G124800	chr2D	60021880	60022926	1046	True	697.000000	697	79.098000	1309	2378	1	chr2D.!!$R1	1069
9	TraesCS2B01G124800	chr2A	59932535	59934488	1953	True	840.000000	1369	85.487000	339	2373	2	chr2A.!!$R4	2034
10	TraesCS2B01G124800	chr2A	59872503	59874452	1949	True	818.000000	1345	85.156000	353	2373	2	chr2A.!!$R3	2020
11	TraesCS2B01G124800	chr2A	59726205	59730203	3998	True	671.857143	2479	92.658143	1	3162	7	chr2A.!!$R2	3161
12	TraesCS2B01G124800	chr2A	59587145	59588550	1405	False	528.000000	734	81.742500	818	2233	2	chr2A.!!$F1	1415
13	TraesCS2B01G124800	chr2A	59880248	59880764	516	True	435.000000	435	82.252000	989	1499	1	chr2A.!!$R1	510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
211	678	0.179108	GAGGCGTGATGGAGTACACC	60.179	60.0	1.82	1.82	34.05	4.16	F
977	4151	0.182537	CCAAGTCACCACCACTCCAA	59.817	55.0	0.00	0.00	0.00	3.53	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1924	5283	2.106534	TTGTCGAACGCGTTGGGA	59.893	55.556	31.89	22.58	38.98	4.37	R
2631	8107	1.267806	GTCAACCTAGAACCGTGTCGA	59.732	52.381	0.00	0.00	0.00	4.20	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
35	502	3.735746	GCGCAAAGCTCTTACAAATTTGT	59.264	39.130	25.99	25.99	43.09	2.83
36	503	4.143535	GCGCAAAGCTCTTACAAATTTGTC	60.144	41.667	26.46	12.39	41.70	3.18
46	513	7.591426	GCTCTTACAAATTTGTCAGTGTTTAGG	59.409	37.037	26.46	8.01	42.35	2.69
70	537	0.670546	CAAGGCCACCGTACTCACTG	60.671	60.000	5.01	0.00	0.00	3.66
75	542	3.379445	ACCGTACTCACTGGGGCG	61.379	66.667	0.00	0.00	0.00	6.13
91	558	0.886490	GGCGGCATACAATCTCCCAG	60.886	60.000	3.07	0.00	0.00	4.45
92	559	1.510480	GCGGCATACAATCTCCCAGC	61.510	60.000	0.00	0.00	0.00	4.85
101	568	1.404391	CAATCTCCCAGCTGACATTGC	59.596	52.381	17.39	0.00	0.00	3.56
106	573	1.154093	CCAGCTGACATTGCGCTTG	60.154	57.895	17.39	9.30	35.28	4.01
130	597	0.389817	TGATCGTCTTGTTGGAGCCG	60.390	55.000	0.00	0.00	0.00	5.52
148	615	1.862602	CGGACCAAAGAAAAGCCCGG	61.863	60.000	0.00	0.00	32.64	5.73
168	635	4.269844	CCGGTCAATTTTGTTGAGGTTTTG	59.730	41.667	0.00	0.00	0.00	2.44
171	638	5.293324	GGTCAATTTTGTTGAGGTTTTGGAC	59.707	40.000	0.00	0.00	0.00	4.02
179	646	2.943653	GGTTTTGGACCGTGCTCG	59.056	61.111	0.14	0.14	39.00	5.03
211	678	0.179108	GAGGCGTGATGGAGTACACC	60.179	60.000	1.82	1.82	34.05	4.16
216	683	1.641577	GTGATGGAGTACACCGCTTC	58.358	55.000	4.80	2.88	0.00	3.86
236	703	0.883833	GGAGGACACGACCGACTTAA	59.116	55.000	0.00	0.00	34.73	1.85
257	724	2.687935	ACAAGCAAAGTTCGACCAATGT	59.312	40.909	0.00	0.00	0.00	2.71
272	739	6.422701	TCGACCAATGTTAGTTACAGTTTCTG	59.577	38.462	0.00	0.00	40.83	3.02
329	797	2.365635	CGGTGTCCATCTCCCCCT	60.366	66.667	0.00	0.00	0.00	4.79
330	798	1.075525	CGGTGTCCATCTCCCCCTA	60.076	63.158	0.00	0.00	0.00	3.53
331	799	0.471971	CGGTGTCCATCTCCCCCTAT	60.472	60.000	0.00	0.00	0.00	2.57
332	800	1.059913	GGTGTCCATCTCCCCCTATG	58.940	60.000	0.00	0.00	0.00	2.23
333	801	0.398318	GTGTCCATCTCCCCCTATGC	59.602	60.000	0.00	0.00	0.00	3.14
335	803	1.345422	TGTCCATCTCCCCCTATGCTT	60.345	52.381	0.00	0.00	0.00	3.91
336	804	1.349357	GTCCATCTCCCCCTATGCTTC	59.651	57.143	0.00	0.00	0.00	3.86
337	805	1.061424	TCCATCTCCCCCTATGCTTCA	60.061	52.381	0.00	0.00	0.00	3.02
467	1098	2.028936	TGGAACAACGCACACATGG	58.971	52.632	0.00	0.00	31.92	3.66
468	1099	1.371635	GGAACAACGCACACATGGC	60.372	57.895	0.00	0.00	0.00	4.40
469	1100	1.654220	GAACAACGCACACATGGCT	59.346	52.632	0.00	0.00	0.00	4.75
470	1101	0.385974	GAACAACGCACACATGGCTC	60.386	55.000	0.00	0.00	0.00	4.70
471	1102	1.795170	AACAACGCACACATGGCTCC	61.795	55.000	0.00	0.00	0.00	4.70
472	1103	2.112928	AACGCACACATGGCTCCA	59.887	55.556	0.00	0.00	0.00	3.86
473	1104	1.968017	AACGCACACATGGCTCCAG	60.968	57.895	0.00	0.00	0.00	3.86
474	1105	3.129502	CGCACACATGGCTCCAGG	61.130	66.667	0.00	0.00	0.00	4.45
475	1106	3.446570	GCACACATGGCTCCAGGC	61.447	66.667	0.00	0.00	41.50	4.85
476	1107	3.129502	CACACATGGCTCCAGGCG	61.130	66.667	0.00	0.00	44.42	5.52
477	1108	3.640407	ACACATGGCTCCAGGCGT	61.640	61.111	0.00	0.00	44.42	5.68
478	1109	2.821366	CACATGGCTCCAGGCGTC	60.821	66.667	0.00	0.00	44.42	5.19
479	1110	4.101448	ACATGGCTCCAGGCGTCC	62.101	66.667	0.00	0.00	44.42	4.79
480	1111	4.864334	CATGGCTCCAGGCGTCCC	62.864	72.222	0.00	0.00	44.42	4.46
765	3819	5.768980	ATATGCCATGTACCTAGCAGATT	57.231	39.130	6.88	0.00	38.89	2.40
798	3964	3.609475	GATCGAACGGCTAGCTATATCG	58.391	50.000	15.72	18.04	0.00	2.92
849	4015	5.105392	ACGTTGGACTAATGGGACGTAAATA	60.105	40.000	0.00	0.00	41.29	1.40
890	4064	3.432051	GAGACCGTGGGCGATCTGG	62.432	68.421	0.00	0.00	41.88	3.86
935	4109	7.552330	TCTTTGGCTATAAATATGCATGCGATA	59.448	33.333	14.09	12.10	0.00	2.92
948	4122	4.142160	TGCATGCGATACACTACTCTCTTT	60.142	41.667	14.09	0.00	0.00	2.52
977	4151	0.182537	CCAAGTCACCACCACTCCAA	59.817	55.000	0.00	0.00	0.00	3.53
1264	4510	2.684881	TCACGTACCCGGTCTTCTATTC	59.315	50.000	0.00	0.00	38.78	1.75
1759	5118	2.363975	GGTCGACATGGTGGCCCTA	61.364	63.158	18.91	0.00	0.00	3.53
1924	5283	1.658673	GAACCTGGACACGACGACT	59.341	57.895	0.00	0.00	0.00	4.18
2168	5527	5.009631	CCAGGGTGAACTCATAATTGACAA	58.990	41.667	0.00	0.00	0.00	3.18
2252	5667	6.294731	GGCCAATATAAATACCAGCTCTTTGG	60.295	42.308	0.00	0.00	44.09	3.28
2499	7969	6.837471	TCTCTGAGGTTTAGGTTTCTAGTC	57.163	41.667	4.59	0.00	0.00	2.59
2555	8025	5.671493	ACTTCTATTTGGATAGTGGGTTCG	58.329	41.667	0.00	0.00	37.20	3.95
2576	8046	2.277084	GGTATGTTTTCACCGATCGCT	58.723	47.619	10.32	0.00	0.00	4.93
2578	8048	3.126343	GGTATGTTTTCACCGATCGCTTT	59.874	43.478	10.32	0.00	0.00	3.51
2614	8090	5.431765	AGGATCACCATGAAGTTGTATCAC	58.568	41.667	0.00	0.00	38.94	3.06
2624	8100	3.198863	AGTTGTATCACGTCGACAGAC	57.801	47.619	17.16	4.25	43.72	3.51
2631	8107	0.868602	CACGTCGACAGACCGTTTGT	60.869	55.000	17.16	0.00	44.28	2.83
2701	8177	3.156334	GCTACGCCACACTCAACG	58.844	61.111	0.00	0.00	0.00	4.10
2718	8194	1.733041	CGTGCAGTCGTCACCGAAT	60.733	57.895	0.00	0.00	46.26	3.34
2739	8215	7.226084	CGAATACGGTCAAAACAATAACGTTA	58.774	34.615	11.02	11.02	34.69	3.18
2775	8252	2.674357	GCATACGTCAACCCGTTACATT	59.326	45.455	0.00	0.00	42.00	2.71
2789	8266	3.493129	CGTTACATTGCTGCCATATACGT	59.507	43.478	0.00	0.00	0.00	3.57
2835	8312	2.083167	GCTTGCTAGCATTTTGGCAA	57.917	45.000	20.13	0.00	46.95	4.52
2838	8315	3.367292	GCTTGCTAGCATTTTGGCAACTA	60.367	43.478	20.13	0.00	46.95	2.24
2906	8383	0.396435	AGAACAACACCGAGGCATCA	59.604	50.000	0.00	0.00	0.00	3.07
2911	8388	0.327924	AACACCGAGGCATCATGGAA	59.672	50.000	0.00	0.00	0.00	3.53
2968	8445	1.203300	TCCTCACCCTCCTCAATGTCA	60.203	52.381	0.00	0.00	0.00	3.58
2969	8446	1.209019	CCTCACCCTCCTCAATGTCAG	59.791	57.143	0.00	0.00	0.00	3.51
3004	8485	4.593634	ACTTGTAGCCTTTCCTTAGTGTCT	59.406	41.667	0.00	0.00	0.00	3.41
3041	8522	3.329497	ATGAGAGGTCATGGGCAGA	57.671	52.632	0.00	0.00	42.19	4.26

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
4	5	0.457337	GAGCTTTGCGCCTTCATTGG	60.457	55.000	4.18	0.00	40.39	3.16
13	480	3.735746	ACAAATTTGTAAGAGCTTTGCGC	59.264	39.130	22.10	0.00	40.16	6.09
18	485	6.699575	ACACTGACAAATTTGTAAGAGCTT	57.300	33.333	33.41	14.71	41.37	3.74
25	492	6.512091	GCGTCCTAAACACTGACAAATTTGTA	60.512	38.462	23.33	11.11	42.43	2.41
35	502	1.270625	CCTTGGCGTCCTAAACACTGA	60.271	52.381	0.00	0.00	0.00	3.41
36	503	1.156736	CCTTGGCGTCCTAAACACTG	58.843	55.000	0.00	0.00	0.00	3.66
46	513	4.382320	TACGGTGGCCTTGGCGTC	62.382	66.667	3.32	1.27	0.00	5.19
70	537	1.600916	GGAGATTGTATGCCGCCCC	60.601	63.158	0.00	0.00	0.00	5.80
75	542	1.141657	TCAGCTGGGAGATTGTATGCC	59.858	52.381	15.13	0.00	0.00	4.40
91	558	2.505557	GCCAAGCGCAATGTCAGC	60.506	61.111	11.47	3.68	37.47	4.26
106	573	1.421485	CAACAAGACGATCAGCGCC	59.579	57.895	2.29	0.00	46.04	6.53
130	597	0.826256	ACCGGGCTTTTCTTTGGTCC	60.826	55.000	6.32	0.00	0.00	4.46
148	615	5.293324	GGTCCAAAACCTCAACAAAATTGAC	59.707	40.000	0.00	0.00	45.45	3.18
179	646	4.593864	GCCTCTCATCGTCCCGCC	62.594	72.222	0.00	0.00	0.00	6.13
211	678	2.504244	GTCGTGTCCTCCGAAGCG	60.504	66.667	0.00	0.00	35.89	4.68
216	683	1.300971	TAAGTCGGTCGTGTCCTCCG	61.301	60.000	0.00	0.00	44.76	4.63
223	690	1.493772	TGCTTGTTAAGTCGGTCGTG	58.506	50.000	0.00	0.00	0.00	4.35
224	691	2.228138	TTGCTTGTTAAGTCGGTCGT	57.772	45.000	0.00	0.00	0.00	4.34
225	692	2.542595	ACTTTGCTTGTTAAGTCGGTCG	59.457	45.455	0.00	0.00	28.79	4.79
236	703	2.687935	ACATTGGTCGAACTTTGCTTGT	59.312	40.909	0.33	0.00	0.00	3.16
292	760	0.464373	GAAGATTGAGGCGGCATCCA	60.464	55.000	13.08	0.79	0.00	3.41
293	761	1.169034	GGAAGATTGAGGCGGCATCC	61.169	60.000	13.08	3.19	0.00	3.51
298	766	1.815421	CACCGGAAGATTGAGGCGG	60.815	63.158	9.46	0.00	0.00	6.13
332	800	0.607489	TGAGCCTGGCTTCTTGAAGC	60.607	55.000	24.26	22.79	39.88	3.86
333	801	1.163554	GTGAGCCTGGCTTCTTGAAG	58.836	55.000	24.26	6.04	39.88	3.02
335	803	1.130054	AGGTGAGCCTGGCTTCTTGA	61.130	55.000	24.26	1.92	45.05	3.02
336	804	1.377994	AGGTGAGCCTGGCTTCTTG	59.622	57.895	24.26	0.00	45.05	3.02
337	805	3.913107	AGGTGAGCCTGGCTTCTT	58.087	55.556	24.26	12.64	45.05	2.52
372	1003	0.521735	GGCCAACACGAGACAATTCC	59.478	55.000	0.00	0.00	0.00	3.01
460	1091	3.612247	GACGCCTGGAGCCATGTGT	62.612	63.158	10.16	10.16	37.84	3.72
461	1092	2.821366	GACGCCTGGAGCCATGTG	60.821	66.667	0.00	4.16	38.78	3.21
462	1093	4.101448	GGACGCCTGGAGCCATGT	62.101	66.667	0.00	0.00	38.78	3.21
463	1094	4.864334	GGGACGCCTGGAGCCATG	62.864	72.222	0.00	0.00	38.78	3.66
464	1095	3.696518	TAGGGACGCCTGGAGCCAT	62.697	63.158	0.00	0.29	38.78	4.40
465	1096	4.392166	TAGGGACGCCTGGAGCCA	62.392	66.667	0.00	0.00	38.78	4.75
466	1097	2.923634	TAGTAGGGACGCCTGGAGCC	62.924	65.000	0.00	0.00	38.78	4.70
467	1098	0.828343	ATAGTAGGGACGCCTGGAGC	60.828	60.000	0.00	0.00	38.52	4.70
468	1099	2.161030	GTATAGTAGGGACGCCTGGAG	58.839	57.143	0.00	0.00	0.00	3.86
469	1100	1.779092	AGTATAGTAGGGACGCCTGGA	59.221	52.381	0.00	0.00	0.00	3.86
470	1101	2.289592	AGTATAGTAGGGACGCCTGG	57.710	55.000	0.00	0.00	0.00	4.45
471	1102	4.094590	CGAATAGTATAGTAGGGACGCCTG	59.905	50.000	0.00	0.00	0.00	4.85
472	1103	4.260170	CGAATAGTATAGTAGGGACGCCT	58.740	47.826	0.00	0.00	0.00	5.52
473	1104	4.006319	ACGAATAGTATAGTAGGGACGCC	58.994	47.826	0.00	0.00	0.00	5.68
474	1105	5.220303	CGTACGAATAGTATAGTAGGGACGC	60.220	48.000	10.44	0.00	37.69	5.19
475	1106	5.864474	ACGTACGAATAGTATAGTAGGGACG	59.136	44.000	24.41	14.51	37.69	4.79
476	1107	8.175649	GTACGTACGAATAGTATAGTAGGGAC	57.824	42.308	24.41	13.41	37.69	4.46
798	3964	1.598601	CTAGGTAGCTCGAAGGACGTC	59.401	57.143	7.13	7.13	43.13	4.34
849	4015	3.906846	CCACTAGGGATAGAGCTTCCAAT	59.093	47.826	5.31	0.00	40.01	3.16
890	4064	3.388308	AGATTCAGCTCACGTGCATATC	58.612	45.455	11.67	7.59	34.99	1.63
935	4109	3.388024	TGGCTTGTGAAAGAGAGTAGTGT	59.612	43.478	0.00	0.00	0.00	3.55
948	4122	0.465460	GGTGACTTGGTGGCTTGTGA	60.465	55.000	0.00	0.00	0.00	3.58
977	4151	5.024785	GGTTAGCTACCTGCACTTCTTAT	57.975	43.478	0.00	0.00	44.10	1.73
1876	5235	2.915659	TCACCGGAGCCGACTGTT	60.916	61.111	9.46	0.00	42.83	3.16
1924	5283	2.106534	TTGTCGAACGCGTTGGGA	59.893	55.556	31.89	22.58	38.98	4.37
2168	5527	4.330250	TGACTAGTAGGCAGTAACTCGTT	58.670	43.478	0.01	0.00	0.00	3.85
2252	5667	7.425595	GCTGCTCGTACATAAAATACAAGTTTC	59.574	37.037	0.00	0.00	0.00	2.78
2313	5735	3.955471	TGAGAAAGTGGGAATGTGATCC	58.045	45.455	0.00	0.00	38.86	3.36
2452	7760	1.648504	CTTCACGAGAGCATGCATCA	58.351	50.000	21.98	0.00	0.00	3.07
2499	7969	1.860676	TTCACCCGAGACTGTTTTCG	58.139	50.000	8.19	8.19	36.62	3.46
2555	8025	1.329599	GCGATCGGTGAAAACATACCC	59.670	52.381	18.30	0.00	33.32	3.69
2576	8046	3.997021	GTGATCCTTCTTCTTCGAGCAAA	59.003	43.478	0.00	0.00	0.00	3.68
2578	8048	2.093973	GGTGATCCTTCTTCTTCGAGCA	60.094	50.000	0.00	0.00	0.00	4.26
2614	8090	2.130711	GACAAACGGTCTGTCGACG	58.869	57.895	11.62	6.07	43.46	5.12
2631	8107	1.267806	GTCAACCTAGAACCGTGTCGA	59.732	52.381	0.00	0.00	0.00	4.20
2718	8194	7.170489	TCACATAACGTTATTGTTTTGACCGTA	59.830	33.333	18.06	0.00	35.30	4.02
2775	8252	2.158827	ACAATGGACGTATATGGCAGCA	60.159	45.455	0.00	0.00	0.00	4.41
2789	8266	9.202273	GTCACAATTAGCATTTTTAACAATGGA	57.798	29.630	14.52	0.60	35.07	3.41
2829	8306	3.745975	CGTTGATCTGACTTAGTTGCCAA	59.254	43.478	0.00	0.00	0.00	4.52
2835	8312	6.480320	GGATATTTGCGTTGATCTGACTTAGT	59.520	38.462	0.00	0.00	0.00	2.24
2838	8315	5.065218	GTGGATATTTGCGTTGATCTGACTT	59.935	40.000	0.00	0.00	0.00	3.01
2906	8383	4.695455	CGTCTTTCATAACAGGTGTTCCAT	59.305	41.667	0.00	0.00	39.31	3.41
2911	8388	3.556423	GGGTCGTCTTTCATAACAGGTGT	60.556	47.826	0.00	0.00	0.00	4.16
2968	8445	2.175202	CTACAAGTGGCAGGAGAGACT	58.825	52.381	0.00	0.00	0.00	3.24
2969	8446	1.404851	GCTACAAGTGGCAGGAGAGAC	60.405	57.143	3.54	0.00	37.02	3.36
3004	8485	1.907807	GGTGCATTGGCCTCCACAA	60.908	57.895	3.32	0.00	40.13	3.33
3041	8522	6.636454	TGTTACCCTCCTCAACTTTGATAT	57.364	37.500	0.00	0.00	36.46	1.63

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.