Multiple sequence alignment - TraesCS2B01G124000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G124000 chr2B 100.000 2830 0 0 1 2830 92165219 92162390 0.000000e+00 5227.0
1 TraesCS2B01G124000 chr2B 92.400 1000 72 4 1833 2830 541075999 541075002 0.000000e+00 1423.0
2 TraesCS2B01G124000 chr2B 92.116 1002 78 1 1829 2830 496424731 496425731 0.000000e+00 1411.0
3 TraesCS2B01G124000 chr2B 91.261 1007 83 2 1829 2830 609526709 609525703 0.000000e+00 1367.0
4 TraesCS2B01G124000 chr2B 85.397 541 74 3 970 1505 92490145 92489605 8.860000e-155 556.0
5 TraesCS2B01G124000 chr2D 92.635 1385 81 7 403 1775 59165235 59163860 0.000000e+00 1973.0
6 TraesCS2B01G124000 chr2D 85.766 548 72 4 962 1504 59452088 59451542 2.450000e-160 575.0
7 TraesCS2B01G124000 chr3B 92.829 1004 71 1 1827 2830 703166569 703165567 0.000000e+00 1454.0
8 TraesCS2B01G124000 chr5B 92.578 997 73 1 1834 2830 586362966 586363961 0.000000e+00 1430.0
9 TraesCS2B01G124000 chr5B 92.423 1003 73 3 1829 2830 410675979 410676979 0.000000e+00 1428.0
10 TraesCS2B01G124000 chr5B 77.830 212 35 9 141 351 477356168 477355968 1.380000e-23 121.0
11 TraesCS2B01G124000 chr1B 91.403 1012 78 6 1824 2830 361778849 361779856 0.000000e+00 1378.0
12 TraesCS2B01G124000 chr1B 91.179 1009 80 5 1829 2830 587156792 587155786 0.000000e+00 1362.0
13 TraesCS2B01G124000 chr7B 90.755 1006 85 4 1832 2830 574803769 574802765 0.000000e+00 1336.0
14 TraesCS2B01G124000 chr2A 83.969 655 98 6 909 1556 58538149 58537495 3.100000e-174 621.0
15 TraesCS2B01G124000 chr2A 85.792 549 72 4 962 1505 58549894 58549347 6.800000e-161 577.0
16 TraesCS2B01G124000 chr2A 92.157 51 3 1 1549 1598 712303916 712303866 1.410000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G124000 chr2B 92162390 92165219 2829 True 5227 5227 100.000 1 2830 1 chr2B.!!$R1 2829
1 TraesCS2B01G124000 chr2B 541075002 541075999 997 True 1423 1423 92.400 1833 2830 1 chr2B.!!$R3 997
2 TraesCS2B01G124000 chr2B 496424731 496425731 1000 False 1411 1411 92.116 1829 2830 1 chr2B.!!$F1 1001
3 TraesCS2B01G124000 chr2B 609525703 609526709 1006 True 1367 1367 91.261 1829 2830 1 chr2B.!!$R4 1001
4 TraesCS2B01G124000 chr2B 92489605 92490145 540 True 556 556 85.397 970 1505 1 chr2B.!!$R2 535
5 TraesCS2B01G124000 chr2D 59163860 59165235 1375 True 1973 1973 92.635 403 1775 1 chr2D.!!$R1 1372
6 TraesCS2B01G124000 chr2D 59451542 59452088 546 True 575 575 85.766 962 1504 1 chr2D.!!$R2 542
7 TraesCS2B01G124000 chr3B 703165567 703166569 1002 True 1454 1454 92.829 1827 2830 1 chr3B.!!$R1 1003
8 TraesCS2B01G124000 chr5B 586362966 586363961 995 False 1430 1430 92.578 1834 2830 1 chr5B.!!$F2 996
9 TraesCS2B01G124000 chr5B 410675979 410676979 1000 False 1428 1428 92.423 1829 2830 1 chr5B.!!$F1 1001
10 TraesCS2B01G124000 chr1B 361778849 361779856 1007 False 1378 1378 91.403 1824 2830 1 chr1B.!!$F1 1006
11 TraesCS2B01G124000 chr1B 587155786 587156792 1006 True 1362 1362 91.179 1829 2830 1 chr1B.!!$R1 1001
12 TraesCS2B01G124000 chr7B 574802765 574803769 1004 True 1336 1336 90.755 1832 2830 1 chr7B.!!$R1 998
13 TraesCS2B01G124000 chr2A 58537495 58538149 654 True 621 621 83.969 909 1556 1 chr2A.!!$R1 647
14 TraesCS2B01G124000 chr2A 58549347 58549894 547 True 577 577 85.792 962 1505 1 chr2A.!!$R2 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 280 0.03213 CCGCTGCCTCGCTTCTATTA 59.968 55.0 0.0 0.0 0.0 0.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1860 1880 0.175073 GCGTACCCCAGAGTTCGAAT 59.825 55.0 0.0 0.0 32.95 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.383318 AGACCATGATTTATTTCCAGATAACG 57.617 34.615 0.00 0.00 0.00 3.18
27 28 8.210946 AGACCATGATTTATTTCCAGATAACGA 58.789 33.333 0.00 0.00 0.00 3.85
28 29 8.924511 ACCATGATTTATTTCCAGATAACGAT 57.075 30.769 0.00 0.00 0.00 3.73
29 30 8.786898 ACCATGATTTATTTCCAGATAACGATG 58.213 33.333 0.00 0.00 0.00 3.84
30 31 8.786898 CCATGATTTATTTCCAGATAACGATGT 58.213 33.333 0.00 0.00 0.00 3.06
31 32 9.603298 CATGATTTATTTCCAGATAACGATGTG 57.397 33.333 0.00 0.00 0.00 3.21
32 33 7.639039 TGATTTATTTCCAGATAACGATGTGC 58.361 34.615 0.00 0.00 0.00 4.57
33 34 6.371809 TTTATTTCCAGATAACGATGTGCC 57.628 37.500 0.00 0.00 0.00 5.01
34 35 3.627395 TTTCCAGATAACGATGTGCCT 57.373 42.857 0.00 0.00 0.00 4.75
35 36 4.746535 TTTCCAGATAACGATGTGCCTA 57.253 40.909 0.00 0.00 0.00 3.93
36 37 3.728076 TCCAGATAACGATGTGCCTAC 57.272 47.619 0.00 0.00 0.00 3.18
37 38 3.296854 TCCAGATAACGATGTGCCTACT 58.703 45.455 0.00 0.00 0.00 2.57
38 39 3.318275 TCCAGATAACGATGTGCCTACTC 59.682 47.826 0.00 0.00 0.00 2.59
39 40 3.068165 CCAGATAACGATGTGCCTACTCA 59.932 47.826 0.00 0.00 0.00 3.41
40 41 4.262207 CCAGATAACGATGTGCCTACTCAT 60.262 45.833 0.00 0.00 32.81 2.90
41 42 4.683320 CAGATAACGATGTGCCTACTCATG 59.317 45.833 0.00 0.00 30.33 3.07
42 43 4.342378 AGATAACGATGTGCCTACTCATGT 59.658 41.667 0.00 0.00 30.33 3.21
43 44 2.299993 ACGATGTGCCTACTCATGTG 57.700 50.000 0.00 0.00 30.33 3.21
44 45 1.550524 ACGATGTGCCTACTCATGTGT 59.449 47.619 5.63 5.63 30.33 3.72
45 46 2.028112 ACGATGTGCCTACTCATGTGTT 60.028 45.455 5.63 0.00 30.33 3.32
46 47 2.604914 CGATGTGCCTACTCATGTGTTC 59.395 50.000 5.63 0.00 30.33 3.18
47 48 2.472695 TGTGCCTACTCATGTGTTCC 57.527 50.000 5.63 0.00 0.00 3.62
48 49 1.977854 TGTGCCTACTCATGTGTTCCT 59.022 47.619 5.63 0.00 0.00 3.36
49 50 2.028112 TGTGCCTACTCATGTGTTCCTC 60.028 50.000 5.63 0.00 0.00 3.71
50 51 2.234908 GTGCCTACTCATGTGTTCCTCT 59.765 50.000 5.63 0.00 0.00 3.69
51 52 2.497675 TGCCTACTCATGTGTTCCTCTC 59.502 50.000 5.63 0.00 0.00 3.20
52 53 2.480416 GCCTACTCATGTGTTCCTCTCG 60.480 54.545 5.63 0.00 0.00 4.04
53 54 2.480416 CCTACTCATGTGTTCCTCTCGC 60.480 54.545 5.63 0.00 0.00 5.03
54 55 0.247736 ACTCATGTGTTCCTCTCGCC 59.752 55.000 0.00 0.00 0.00 5.54
55 56 0.247460 CTCATGTGTTCCTCTCGCCA 59.753 55.000 0.00 0.00 0.00 5.69
56 57 0.684535 TCATGTGTTCCTCTCGCCAA 59.315 50.000 0.00 0.00 0.00 4.52
57 58 1.071542 TCATGTGTTCCTCTCGCCAAA 59.928 47.619 0.00 0.00 0.00 3.28
58 59 1.879380 CATGTGTTCCTCTCGCCAAAA 59.121 47.619 0.00 0.00 0.00 2.44
59 60 2.270352 TGTGTTCCTCTCGCCAAAAT 57.730 45.000 0.00 0.00 0.00 1.82
60 61 2.151202 TGTGTTCCTCTCGCCAAAATC 58.849 47.619 0.00 0.00 0.00 2.17
61 62 2.151202 GTGTTCCTCTCGCCAAAATCA 58.849 47.619 0.00 0.00 0.00 2.57
62 63 2.160417 GTGTTCCTCTCGCCAAAATCAG 59.840 50.000 0.00 0.00 0.00 2.90
63 64 2.224523 TGTTCCTCTCGCCAAAATCAGT 60.225 45.455 0.00 0.00 0.00 3.41
64 65 3.007506 TGTTCCTCTCGCCAAAATCAGTA 59.992 43.478 0.00 0.00 0.00 2.74
65 66 3.973206 TCCTCTCGCCAAAATCAGTAA 57.027 42.857 0.00 0.00 0.00 2.24
66 67 3.861840 TCCTCTCGCCAAAATCAGTAAG 58.138 45.455 0.00 0.00 0.00 2.34
67 68 2.939103 CCTCTCGCCAAAATCAGTAAGG 59.061 50.000 0.00 0.00 0.00 2.69
68 69 3.600388 CTCTCGCCAAAATCAGTAAGGT 58.400 45.455 0.00 0.00 0.00 3.50
69 70 4.003648 CTCTCGCCAAAATCAGTAAGGTT 58.996 43.478 0.00 0.00 0.00 3.50
70 71 4.000988 TCTCGCCAAAATCAGTAAGGTTC 58.999 43.478 0.00 0.00 0.00 3.62
71 72 3.745799 TCGCCAAAATCAGTAAGGTTCA 58.254 40.909 0.00 0.00 0.00 3.18
72 73 3.500680 TCGCCAAAATCAGTAAGGTTCAC 59.499 43.478 0.00 0.00 0.00 3.18
73 74 3.252215 CGCCAAAATCAGTAAGGTTCACA 59.748 43.478 0.00 0.00 0.00 3.58
74 75 4.613622 CGCCAAAATCAGTAAGGTTCACAG 60.614 45.833 0.00 0.00 0.00 3.66
75 76 4.518970 GCCAAAATCAGTAAGGTTCACAGA 59.481 41.667 0.00 0.00 0.00 3.41
76 77 5.009610 GCCAAAATCAGTAAGGTTCACAGAA 59.990 40.000 0.00 0.00 0.00 3.02
77 78 6.672147 CCAAAATCAGTAAGGTTCACAGAAG 58.328 40.000 0.00 0.00 0.00 2.85
78 79 6.486657 CCAAAATCAGTAAGGTTCACAGAAGA 59.513 38.462 0.00 0.00 0.00 2.87
79 80 7.175641 CCAAAATCAGTAAGGTTCACAGAAGAT 59.824 37.037 0.00 0.00 0.00 2.40
80 81 7.913674 AAATCAGTAAGGTTCACAGAAGATC 57.086 36.000 0.00 0.00 0.00 2.75
81 82 5.407407 TCAGTAAGGTTCACAGAAGATCC 57.593 43.478 0.00 0.00 0.00 3.36
82 83 5.087323 TCAGTAAGGTTCACAGAAGATCCT 58.913 41.667 0.00 0.00 38.95 3.24
83 84 5.047021 TCAGTAAGGTTCACAGAAGATCCTG 60.047 44.000 0.00 0.00 37.68 3.86
84 85 2.777832 AGGTTCACAGAAGATCCTGC 57.222 50.000 0.00 0.00 36.58 4.85
85 86 2.264455 AGGTTCACAGAAGATCCTGCT 58.736 47.619 0.00 0.00 36.58 4.24
86 87 2.027377 AGGTTCACAGAAGATCCTGCTG 60.027 50.000 0.52 0.52 42.60 4.41
87 88 2.027745 GGTTCACAGAAGATCCTGCTGA 60.028 50.000 8.84 6.97 39.42 4.26
88 89 3.557898 GGTTCACAGAAGATCCTGCTGAA 60.558 47.826 8.84 11.12 39.42 3.02
89 90 4.067896 GTTCACAGAAGATCCTGCTGAAA 58.932 43.478 8.84 0.88 39.42 2.69
90 91 3.668447 TCACAGAAGATCCTGCTGAAAC 58.332 45.455 8.84 0.00 39.42 2.78
91 92 3.071457 TCACAGAAGATCCTGCTGAAACA 59.929 43.478 8.84 0.00 39.42 2.83
92 93 4.008330 CACAGAAGATCCTGCTGAAACAT 58.992 43.478 8.84 0.00 39.42 2.71
93 94 4.458295 CACAGAAGATCCTGCTGAAACATT 59.542 41.667 8.84 0.00 39.42 2.71
94 95 4.699257 ACAGAAGATCCTGCTGAAACATTC 59.301 41.667 8.84 0.00 39.42 2.67
95 96 4.942483 CAGAAGATCCTGCTGAAACATTCT 59.058 41.667 0.00 0.00 39.42 2.40
96 97 5.415077 CAGAAGATCCTGCTGAAACATTCTT 59.585 40.000 0.00 0.00 39.42 2.52
97 98 6.596888 CAGAAGATCCTGCTGAAACATTCTTA 59.403 38.462 0.00 0.00 39.42 2.10
98 99 6.822676 AGAAGATCCTGCTGAAACATTCTTAG 59.177 38.462 0.00 0.00 0.00 2.18
99 100 5.435291 AGATCCTGCTGAAACATTCTTAGG 58.565 41.667 0.00 0.00 0.00 2.69
100 101 3.347216 TCCTGCTGAAACATTCTTAGGC 58.653 45.455 0.00 0.00 0.00 3.93
101 102 3.009473 TCCTGCTGAAACATTCTTAGGCT 59.991 43.478 0.00 0.00 0.00 4.58
102 103 3.376546 CCTGCTGAAACATTCTTAGGCTC 59.623 47.826 0.00 0.00 0.00 4.70
103 104 4.005650 CTGCTGAAACATTCTTAGGCTCA 58.994 43.478 0.00 0.00 0.00 4.26
104 105 4.397420 TGCTGAAACATTCTTAGGCTCAA 58.603 39.130 0.00 0.00 0.00 3.02
105 106 4.216257 TGCTGAAACATTCTTAGGCTCAAC 59.784 41.667 0.00 0.00 0.00 3.18
106 107 4.379918 GCTGAAACATTCTTAGGCTCAACC 60.380 45.833 0.00 0.00 39.61 3.77
107 108 4.724399 TGAAACATTCTTAGGCTCAACCA 58.276 39.130 0.00 0.00 43.14 3.67
108 109 5.324409 TGAAACATTCTTAGGCTCAACCAT 58.676 37.500 0.00 0.00 43.14 3.55
109 110 5.183713 TGAAACATTCTTAGGCTCAACCATG 59.816 40.000 0.00 0.00 43.14 3.66
110 111 4.307032 ACATTCTTAGGCTCAACCATGT 57.693 40.909 0.00 0.00 43.14 3.21
111 112 4.012374 ACATTCTTAGGCTCAACCATGTG 58.988 43.478 0.00 0.00 43.14 3.21
112 113 2.113860 TCTTAGGCTCAACCATGTGC 57.886 50.000 0.00 0.00 43.58 4.57
113 114 0.729116 CTTAGGCTCAACCATGTGCG 59.271 55.000 0.00 0.00 44.88 5.34
114 115 0.036164 TTAGGCTCAACCATGTGCGT 59.964 50.000 0.00 3.99 44.88 5.24
115 116 0.391130 TAGGCTCAACCATGTGCGTC 60.391 55.000 0.00 0.00 44.88 5.19
116 117 1.672356 GGCTCAACCATGTGCGTCT 60.672 57.895 0.00 0.00 44.88 4.18
117 118 1.499056 GCTCAACCATGTGCGTCTG 59.501 57.895 0.00 0.00 36.45 3.51
118 119 1.499056 CTCAACCATGTGCGTCTGC 59.501 57.895 0.00 0.00 43.20 4.26
135 136 4.728409 CAGGGAGCTGCATGTGAA 57.272 55.556 12.10 0.00 0.00 3.18
136 137 3.186345 CAGGGAGCTGCATGTGAAT 57.814 52.632 12.10 0.00 0.00 2.57
137 138 2.336945 CAGGGAGCTGCATGTGAATA 57.663 50.000 12.10 0.00 0.00 1.75
138 139 2.219458 CAGGGAGCTGCATGTGAATAG 58.781 52.381 12.10 0.00 0.00 1.73
139 140 1.842562 AGGGAGCTGCATGTGAATAGT 59.157 47.619 7.79 0.00 0.00 2.12
140 141 1.945394 GGGAGCTGCATGTGAATAGTG 59.055 52.381 7.79 0.00 0.00 2.74
141 142 2.420547 GGGAGCTGCATGTGAATAGTGA 60.421 50.000 7.79 0.00 0.00 3.41
142 143 3.273434 GGAGCTGCATGTGAATAGTGAA 58.727 45.455 0.00 0.00 0.00 3.18
143 144 3.064545 GGAGCTGCATGTGAATAGTGAAC 59.935 47.826 0.00 0.00 0.00 3.18
144 145 3.678289 AGCTGCATGTGAATAGTGAACA 58.322 40.909 1.02 0.00 0.00 3.18
145 146 3.438087 AGCTGCATGTGAATAGTGAACAC 59.562 43.478 1.02 0.00 35.45 3.32
146 147 3.438087 GCTGCATGTGAATAGTGAACACT 59.562 43.478 12.10 12.10 45.02 3.55
147 148 4.670992 GCTGCATGTGAATAGTGAACACTG 60.671 45.833 16.37 0.88 42.52 3.66
148 149 4.388485 TGCATGTGAATAGTGAACACTGT 58.612 39.130 16.37 7.94 42.52 3.55
149 150 5.546526 TGCATGTGAATAGTGAACACTGTA 58.453 37.500 16.37 0.00 42.52 2.74
150 151 5.408299 TGCATGTGAATAGTGAACACTGTAC 59.592 40.000 16.37 7.47 42.52 2.90
151 152 5.408299 GCATGTGAATAGTGAACACTGTACA 59.592 40.000 16.37 12.11 42.52 2.90
152 153 6.401474 GCATGTGAATAGTGAACACTGTACAG 60.401 42.308 21.44 21.44 42.52 2.74
153 154 4.988540 TGTGAATAGTGAACACTGTACAGC 59.011 41.667 22.90 7.02 42.52 4.40
154 155 5.221441 TGTGAATAGTGAACACTGTACAGCT 60.221 40.000 22.90 12.53 42.52 4.24
155 156 5.696724 GTGAATAGTGAACACTGTACAGCTT 59.303 40.000 22.90 13.88 42.52 3.74
156 157 6.202954 GTGAATAGTGAACACTGTACAGCTTT 59.797 38.462 22.90 15.30 42.52 3.51
157 158 7.384115 GTGAATAGTGAACACTGTACAGCTTTA 59.616 37.037 22.90 8.34 42.52 1.85
158 159 8.094548 TGAATAGTGAACACTGTACAGCTTTAT 58.905 33.333 22.90 4.93 42.52 1.40
159 160 8.848474 AATAGTGAACACTGTACAGCTTTATT 57.152 30.769 22.90 13.07 42.52 1.40
160 161 6.545504 AGTGAACACTGTACAGCTTTATTG 57.454 37.500 22.90 14.21 40.75 1.90
161 162 5.470098 AGTGAACACTGTACAGCTTTATTGG 59.530 40.000 22.90 5.07 40.75 3.16
162 163 4.215399 TGAACACTGTACAGCTTTATTGGC 59.785 41.667 22.90 9.28 0.00 4.52
163 164 3.081804 ACACTGTACAGCTTTATTGGCC 58.918 45.455 22.90 0.00 0.00 5.36
164 165 3.081061 CACTGTACAGCTTTATTGGCCA 58.919 45.455 22.90 0.00 0.00 5.36
165 166 3.696051 CACTGTACAGCTTTATTGGCCAT 59.304 43.478 22.90 0.00 0.00 4.40
166 167 3.947834 ACTGTACAGCTTTATTGGCCATC 59.052 43.478 22.90 0.00 0.00 3.51
167 168 2.942376 TGTACAGCTTTATTGGCCATCG 59.058 45.455 6.09 0.00 0.00 3.84
168 169 1.392589 ACAGCTTTATTGGCCATCGG 58.607 50.000 6.09 0.00 0.00 4.18
169 170 1.340991 ACAGCTTTATTGGCCATCGGT 60.341 47.619 6.09 0.00 0.00 4.69
170 171 1.334869 CAGCTTTATTGGCCATCGGTC 59.665 52.381 6.09 0.00 0.00 4.79
171 172 1.212935 AGCTTTATTGGCCATCGGTCT 59.787 47.619 6.09 0.00 0.00 3.85
172 173 2.438021 AGCTTTATTGGCCATCGGTCTA 59.562 45.455 6.09 0.00 0.00 2.59
173 174 3.073062 AGCTTTATTGGCCATCGGTCTAT 59.927 43.478 6.09 0.00 0.00 1.98
174 175 3.821033 GCTTTATTGGCCATCGGTCTATT 59.179 43.478 6.09 0.00 0.00 1.73
175 176 4.320494 GCTTTATTGGCCATCGGTCTATTG 60.320 45.833 6.09 0.00 0.00 1.90
176 177 4.431416 TTATTGGCCATCGGTCTATTGT 57.569 40.909 6.09 0.00 0.00 2.71
177 178 2.799126 TTGGCCATCGGTCTATTGTT 57.201 45.000 6.09 0.00 0.00 2.83
178 179 2.036958 TGGCCATCGGTCTATTGTTG 57.963 50.000 0.00 0.00 0.00 3.33
179 180 0.663153 GGCCATCGGTCTATTGTTGC 59.337 55.000 0.00 0.00 0.00 4.17
180 181 0.304705 GCCATCGGTCTATTGTTGCG 59.695 55.000 0.00 0.00 0.00 4.85
181 182 1.651987 CCATCGGTCTATTGTTGCGT 58.348 50.000 0.00 0.00 0.00 5.24
182 183 1.327460 CCATCGGTCTATTGTTGCGTG 59.673 52.381 0.00 0.00 0.00 5.34
183 184 2.267426 CATCGGTCTATTGTTGCGTGA 58.733 47.619 0.00 0.00 0.00 4.35
184 185 2.665649 TCGGTCTATTGTTGCGTGAT 57.334 45.000 0.00 0.00 0.00 3.06
185 186 2.267426 TCGGTCTATTGTTGCGTGATG 58.733 47.619 0.00 0.00 0.00 3.07
186 187 1.327460 CGGTCTATTGTTGCGTGATGG 59.673 52.381 0.00 0.00 0.00 3.51
187 188 2.627945 GGTCTATTGTTGCGTGATGGA 58.372 47.619 0.00 0.00 0.00 3.41
188 189 3.006940 GGTCTATTGTTGCGTGATGGAA 58.993 45.455 0.00 0.00 0.00 3.53
189 190 3.627577 GGTCTATTGTTGCGTGATGGAAT 59.372 43.478 0.00 0.00 0.00 3.01
190 191 4.260784 GGTCTATTGTTGCGTGATGGAATC 60.261 45.833 0.00 0.00 45.83 2.52
191 192 3.876914 TCTATTGTTGCGTGATGGAATCC 59.123 43.478 0.00 0.00 44.73 3.01
192 193 1.902938 TTGTTGCGTGATGGAATCCA 58.097 45.000 3.67 3.67 44.73 3.41
193 194 1.164411 TGTTGCGTGATGGAATCCAC 58.836 50.000 3.09 0.00 44.73 4.02
194 195 0.096976 GTTGCGTGATGGAATCCACG 59.903 55.000 3.09 5.14 44.73 4.94
195 196 0.036858 TTGCGTGATGGAATCCACGA 60.037 50.000 17.42 0.00 44.73 4.35
196 197 0.460109 TGCGTGATGGAATCCACGAG 60.460 55.000 17.42 3.68 44.73 4.18
197 198 0.460284 GCGTGATGGAATCCACGAGT 60.460 55.000 17.42 0.00 44.73 4.18
198 199 1.560923 CGTGATGGAATCCACGAGTC 58.439 55.000 3.09 0.00 44.73 3.36
199 200 1.560923 GTGATGGAATCCACGAGTCG 58.439 55.000 11.85 11.85 44.73 4.18
200 201 0.179111 TGATGGAATCCACGAGTCGC 60.179 55.000 13.59 0.00 44.73 5.19
201 202 0.876342 GATGGAATCCACGAGTCGCC 60.876 60.000 13.59 4.99 37.38 5.54
202 203 1.613317 ATGGAATCCACGAGTCGCCA 61.613 55.000 13.59 11.10 35.80 5.69
203 204 1.519455 GGAATCCACGAGTCGCCAG 60.519 63.158 13.59 2.66 0.00 4.85
204 205 1.511305 GAATCCACGAGTCGCCAGA 59.489 57.895 13.59 7.34 0.00 3.86
205 206 0.108804 GAATCCACGAGTCGCCAGAA 60.109 55.000 13.59 0.00 0.00 3.02
206 207 0.537188 AATCCACGAGTCGCCAGAAT 59.463 50.000 13.59 0.00 0.00 2.40
207 208 0.179100 ATCCACGAGTCGCCAGAATG 60.179 55.000 13.59 1.71 0.00 2.67
220 221 2.184385 CAGAATGGACGAAAGCATGC 57.816 50.000 10.51 10.51 0.00 4.06
221 222 1.469703 CAGAATGGACGAAAGCATGCA 59.530 47.619 21.98 0.00 0.00 3.96
222 223 1.741706 AGAATGGACGAAAGCATGCAG 59.258 47.619 21.98 10.53 0.00 4.41
223 224 0.813184 AATGGACGAAAGCATGCAGG 59.187 50.000 21.98 8.08 0.00 4.85
224 225 1.033746 ATGGACGAAAGCATGCAGGG 61.034 55.000 21.98 8.45 0.00 4.45
225 226 2.486966 GACGAAAGCATGCAGGGC 59.513 61.111 21.98 3.76 0.00 5.19
226 227 2.034687 ACGAAAGCATGCAGGGCT 59.965 55.556 21.98 9.68 45.15 5.19
227 228 0.744414 GACGAAAGCATGCAGGGCTA 60.744 55.000 21.98 0.00 41.66 3.93
228 229 0.745845 ACGAAAGCATGCAGGGCTAG 60.746 55.000 21.98 12.06 41.66 3.42
229 230 0.745845 CGAAAGCATGCAGGGCTAGT 60.746 55.000 21.98 7.39 41.66 2.57
230 231 1.020437 GAAAGCATGCAGGGCTAGTC 58.980 55.000 21.98 11.94 41.66 2.59
231 232 0.622665 AAAGCATGCAGGGCTAGTCT 59.377 50.000 21.98 0.00 41.66 3.24
232 233 0.107312 AAGCATGCAGGGCTAGTCTG 60.107 55.000 21.98 9.82 41.66 3.51
233 234 0.979709 AGCATGCAGGGCTAGTCTGA 60.980 55.000 21.98 5.23 40.47 3.27
234 235 0.813210 GCATGCAGGGCTAGTCTGAC 60.813 60.000 14.21 0.00 34.36 3.51
235 236 0.829333 CATGCAGGGCTAGTCTGACT 59.171 55.000 15.57 15.57 34.36 3.41
236 237 0.829333 ATGCAGGGCTAGTCTGACTG 59.171 55.000 20.19 10.98 34.36 3.51
237 238 0.251787 TGCAGGGCTAGTCTGACTGA 60.252 55.000 20.19 4.03 34.36 3.41
238 239 1.118838 GCAGGGCTAGTCTGACTGAT 58.881 55.000 20.19 0.00 34.36 2.90
239 240 1.068434 GCAGGGCTAGTCTGACTGATC 59.932 57.143 20.19 8.58 34.36 2.92
240 241 1.686052 CAGGGCTAGTCTGACTGATCC 59.314 57.143 20.19 16.27 34.36 3.36
241 242 1.289231 AGGGCTAGTCTGACTGATCCA 59.711 52.381 20.19 0.00 0.00 3.41
242 243 2.090831 AGGGCTAGTCTGACTGATCCAT 60.091 50.000 20.19 12.24 0.00 3.41
243 244 2.298729 GGGCTAGTCTGACTGATCCATC 59.701 54.545 20.19 3.68 0.00 3.51
244 245 2.961741 GGCTAGTCTGACTGATCCATCA 59.038 50.000 20.19 0.00 35.16 3.07
245 246 3.577848 GGCTAGTCTGACTGATCCATCAT 59.422 47.826 20.19 0.00 36.02 2.45
246 247 4.558178 GCTAGTCTGACTGATCCATCATG 58.442 47.826 20.19 0.00 36.02 3.07
247 248 4.039004 GCTAGTCTGACTGATCCATCATGT 59.961 45.833 20.19 0.00 36.02 3.21
248 249 4.669206 AGTCTGACTGATCCATCATGTC 57.331 45.455 10.00 10.09 36.02 3.06
249 250 4.028825 AGTCTGACTGATCCATCATGTCA 58.971 43.478 10.00 15.26 39.88 3.58
250 251 4.654724 AGTCTGACTGATCCATCATGTCAT 59.345 41.667 10.00 5.70 40.56 3.06
251 252 4.750598 GTCTGACTGATCCATCATGTCATG 59.249 45.833 6.47 6.47 40.56 3.07
252 253 4.407945 TCTGACTGATCCATCATGTCATGT 59.592 41.667 12.54 0.00 40.56 3.21
253 254 5.599656 TCTGACTGATCCATCATGTCATGTA 59.400 40.000 12.54 0.56 40.56 2.29
254 255 5.604565 TGACTGATCCATCATGTCATGTAC 58.395 41.667 12.54 0.00 38.64 2.90
255 256 5.129155 TGACTGATCCATCATGTCATGTACA 59.871 40.000 12.54 0.00 43.86 2.90
256 257 5.608449 ACTGATCCATCATGTCATGTACAG 58.392 41.667 12.54 14.01 42.70 2.74
257 258 5.129980 ACTGATCCATCATGTCATGTACAGT 59.870 40.000 12.54 14.50 42.70 3.55
258 259 6.324770 ACTGATCCATCATGTCATGTACAGTA 59.675 38.462 12.54 0.00 42.70 2.74
259 260 6.515832 TGATCCATCATGTCATGTACAGTAC 58.484 40.000 12.54 3.49 42.70 2.73
260 261 5.276461 TCCATCATGTCATGTACAGTACC 57.724 43.478 12.54 0.00 42.70 3.34
261 262 4.100963 TCCATCATGTCATGTACAGTACCC 59.899 45.833 12.54 0.00 42.70 3.69
262 263 3.793797 TCATGTCATGTACAGTACCCG 57.206 47.619 12.54 0.00 42.70 5.28
263 264 2.159156 TCATGTCATGTACAGTACCCGC 60.159 50.000 12.54 0.00 42.70 6.13
264 265 1.552578 TGTCATGTACAGTACCCGCT 58.447 50.000 8.30 0.00 33.01 5.52
265 266 1.203758 TGTCATGTACAGTACCCGCTG 59.796 52.381 8.30 1.59 41.92 5.18
266 267 0.174845 TCATGTACAGTACCCGCTGC 59.825 55.000 8.30 0.00 39.96 5.25
267 268 0.810031 CATGTACAGTACCCGCTGCC 60.810 60.000 8.30 0.00 39.96 4.85
268 269 0.976073 ATGTACAGTACCCGCTGCCT 60.976 55.000 8.30 0.00 39.96 4.75
269 270 1.141234 GTACAGTACCCGCTGCCTC 59.859 63.158 0.00 0.00 39.96 4.70
270 271 2.412323 TACAGTACCCGCTGCCTCG 61.412 63.158 0.00 0.00 39.96 4.63
273 274 4.452733 GTACCCGCTGCCTCGCTT 62.453 66.667 0.00 0.00 0.00 4.68
274 275 4.143333 TACCCGCTGCCTCGCTTC 62.143 66.667 0.00 0.00 0.00 3.86
276 277 3.838271 CCCGCTGCCTCGCTTCTA 61.838 66.667 0.00 0.00 0.00 2.10
277 278 2.419198 CCGCTGCCTCGCTTCTAT 59.581 61.111 0.00 0.00 0.00 1.98
278 279 1.227380 CCGCTGCCTCGCTTCTATT 60.227 57.895 0.00 0.00 0.00 1.73
279 280 0.032130 CCGCTGCCTCGCTTCTATTA 59.968 55.000 0.00 0.00 0.00 0.98
280 281 1.538204 CCGCTGCCTCGCTTCTATTAA 60.538 52.381 0.00 0.00 0.00 1.40
281 282 1.789464 CGCTGCCTCGCTTCTATTAAG 59.211 52.381 0.00 0.00 0.00 1.85
282 283 1.529012 GCTGCCTCGCTTCTATTAAGC 59.471 52.381 0.00 0.00 39.77 3.09
313 314 3.490890 CGCAGCTGCTAAACTCCC 58.509 61.111 34.22 4.61 39.32 4.30
314 315 2.456119 CGCAGCTGCTAAACTCCCG 61.456 63.158 34.22 13.26 39.32 5.14
315 316 1.376037 GCAGCTGCTAAACTCCCGT 60.376 57.895 31.33 0.00 38.21 5.28
316 317 0.955919 GCAGCTGCTAAACTCCCGTT 60.956 55.000 31.33 0.00 38.21 4.44
317 318 1.079503 CAGCTGCTAAACTCCCGTTC 58.920 55.000 0.00 0.00 31.66 3.95
318 319 0.389948 AGCTGCTAAACTCCCGTTCG 60.390 55.000 0.00 0.00 31.66 3.95
319 320 0.669625 GCTGCTAAACTCCCGTTCGT 60.670 55.000 0.00 0.00 31.66 3.85
320 321 1.068474 CTGCTAAACTCCCGTTCGTG 58.932 55.000 0.00 0.00 31.66 4.35
321 322 0.320073 TGCTAAACTCCCGTTCGTGG 60.320 55.000 0.00 0.00 31.66 4.94
337 338 0.171903 GTGGGCACACATCTTCATGC 59.828 55.000 15.95 0.00 46.90 4.06
338 339 0.251253 TGGGCACACATCTTCATGCA 60.251 50.000 0.00 0.00 39.92 3.96
339 340 1.108776 GGGCACACATCTTCATGCAT 58.891 50.000 0.00 0.00 39.92 3.96
340 341 1.066605 GGGCACACATCTTCATGCATC 59.933 52.381 0.00 0.00 39.92 3.91
341 342 1.268386 GGCACACATCTTCATGCATCG 60.268 52.381 0.00 0.00 39.92 3.84
342 343 1.667212 GCACACATCTTCATGCATCGA 59.333 47.619 0.00 0.00 38.00 3.59
343 344 2.096335 GCACACATCTTCATGCATCGAA 59.904 45.455 0.00 3.84 38.00 3.71
344 345 3.787805 GCACACATCTTCATGCATCGAAG 60.788 47.826 22.51 22.51 41.05 3.79
345 346 2.353889 ACACATCTTCATGCATCGAAGC 59.646 45.455 23.19 5.52 39.80 3.86
346 347 1.945394 ACATCTTCATGCATCGAAGCC 59.055 47.619 23.19 0.00 39.80 4.35
347 348 1.266175 CATCTTCATGCATCGAAGCCC 59.734 52.381 23.19 0.00 39.80 5.19
348 349 0.252761 TCTTCATGCATCGAAGCCCA 59.747 50.000 23.19 11.49 39.80 5.36
349 350 1.134007 TCTTCATGCATCGAAGCCCAT 60.134 47.619 23.19 0.00 39.80 4.00
350 351 2.104622 TCTTCATGCATCGAAGCCCATA 59.895 45.455 23.19 11.00 39.80 2.74
351 352 2.865119 TCATGCATCGAAGCCCATAT 57.135 45.000 10.54 0.00 0.00 1.78
352 353 3.144657 TCATGCATCGAAGCCCATATT 57.855 42.857 10.54 0.00 0.00 1.28
353 354 2.815503 TCATGCATCGAAGCCCATATTG 59.184 45.455 10.54 0.00 0.00 1.90
354 355 2.636647 TGCATCGAAGCCCATATTGA 57.363 45.000 10.54 0.00 0.00 2.57
355 356 2.929641 TGCATCGAAGCCCATATTGAA 58.070 42.857 10.54 0.00 0.00 2.69
356 357 2.618241 TGCATCGAAGCCCATATTGAAC 59.382 45.455 10.54 0.00 0.00 3.18
357 358 2.349817 GCATCGAAGCCCATATTGAACG 60.350 50.000 0.00 0.00 0.00 3.95
358 359 2.684001 TCGAAGCCCATATTGAACGT 57.316 45.000 0.00 0.00 0.00 3.99
359 360 2.546778 TCGAAGCCCATATTGAACGTC 58.453 47.619 0.00 0.00 0.00 4.34
360 361 2.167693 TCGAAGCCCATATTGAACGTCT 59.832 45.455 0.00 0.00 0.00 4.18
361 362 3.382227 TCGAAGCCCATATTGAACGTCTA 59.618 43.478 0.00 0.00 0.00 2.59
362 363 3.489785 CGAAGCCCATATTGAACGTCTAC 59.510 47.826 0.00 0.00 0.00 2.59
363 364 3.093717 AGCCCATATTGAACGTCTACG 57.906 47.619 0.04 0.04 46.33 3.51
364 365 2.691526 AGCCCATATTGAACGTCTACGA 59.308 45.455 9.86 0.00 43.02 3.43
365 366 3.321111 AGCCCATATTGAACGTCTACGAT 59.679 43.478 9.86 0.00 43.02 3.73
366 367 4.521639 AGCCCATATTGAACGTCTACGATA 59.478 41.667 9.86 0.00 43.02 2.92
367 368 4.857588 GCCCATATTGAACGTCTACGATAG 59.142 45.833 9.86 0.00 43.02 2.08
419 420 3.250744 CCGAATTACAGACGAGCTTCAA 58.749 45.455 0.00 0.00 0.00 2.69
422 423 5.163854 CCGAATTACAGACGAGCTTCAAAAT 60.164 40.000 0.00 0.00 0.00 1.82
457 458 5.331906 TGGGAGGATTGACATGAAAATGAA 58.668 37.500 0.00 0.00 0.00 2.57
481 482 3.541071 TTGATCACGCACATTCAACAG 57.459 42.857 0.00 0.00 0.00 3.16
486 487 4.884458 TCACGCACATTCAACAGTTTTA 57.116 36.364 0.00 0.00 0.00 1.52
492 493 5.043248 GCACATTCAACAGTTTTACAAGCT 58.957 37.500 0.00 0.00 0.00 3.74
504 505 4.662468 TTTACAAGCTTTGGACAATGCA 57.338 36.364 20.38 0.00 42.01 3.96
525 526 1.214175 TGCCCAGGTTCAACTTCAAGA 59.786 47.619 0.00 0.00 0.00 3.02
540 541 1.899142 TCAAGATGACACGGTGGATGA 59.101 47.619 13.48 4.68 0.00 2.92
626 637 0.951040 GTTGGTGCCTCTTCCGTCAG 60.951 60.000 0.00 0.00 0.00 3.51
709 720 8.352942 GGTTTGTCTATATTTGGTCAATGGATC 58.647 37.037 0.00 0.00 0.00 3.36
767 778 3.352648 TGCCAACTTTATAGGAGGCAAC 58.647 45.455 15.08 0.00 46.06 4.17
802 813 9.920946 ACACATAGAATTTGTCCAAATATAGGT 57.079 29.630 5.73 7.30 39.88 3.08
841 852 3.430790 CGGTGTCATCAAGAGCTGGATTA 60.431 47.826 0.00 0.00 0.00 1.75
915 926 1.202486 GGCCGACGACCATGATTCTTA 60.202 52.381 0.00 0.00 0.00 2.10
967 978 0.457166 TTCGTTATGCTACGCTGCGT 60.457 50.000 31.22 31.22 44.35 5.24
976 987 2.028766 CTACGCTGCGTTGCATCCTG 62.029 60.000 33.52 9.38 41.54 3.86
980 991 1.672030 CTGCGTTGCATCCTGGACA 60.672 57.895 0.00 0.00 38.13 4.02
985 996 0.883833 GTTGCATCCTGGACACCAAG 59.116 55.000 0.00 0.00 30.80 3.61
994 1005 2.110213 GACACCAAGACGGCCACA 59.890 61.111 2.24 0.00 39.03 4.17
1001 1012 1.004320 AAGACGGCCACACGCATTA 60.004 52.632 2.24 0.00 40.31 1.90
1035 1046 1.142688 ATGGAGCACCCCTGGTTCTT 61.143 55.000 0.00 0.00 31.02 2.52
1044 1055 1.450211 CCTGGTTCTTCCACGGTGT 59.550 57.895 7.45 0.00 41.93 4.16
1129 1143 0.904865 AGTTCGAGGAGGACATGGCA 60.905 55.000 0.00 0.00 0.00 4.92
1154 1168 1.075979 CATGACCGCGTTCGACATCA 61.076 55.000 4.92 0.00 38.10 3.07
1159 1173 2.451990 CGCGTTCGACATCATGGCA 61.452 57.895 0.00 0.00 38.10 4.92
1303 1317 4.821589 CGCGTGAGGAGGGAAGGC 62.822 72.222 0.00 0.00 0.00 4.35
1377 1394 2.897969 AGGTGACTGTGTTTAGGATCGT 59.102 45.455 0.00 0.00 41.13 3.73
1384 1401 3.669536 TGTGTTTAGGATCGTTGATGCA 58.330 40.909 0.00 0.00 32.78 3.96
1385 1402 4.068599 TGTGTTTAGGATCGTTGATGCAA 58.931 39.130 0.00 0.00 32.78 4.08
1473 1490 2.893398 GGTCGTGAAGCCTCGGAT 59.107 61.111 0.00 0.00 0.00 4.18
1484 1502 2.973945 AGCCTCGGATAGTGTGAAAAC 58.026 47.619 0.00 0.00 0.00 2.43
1489 1508 4.159879 CCTCGGATAGTGTGAAAACCTACT 59.840 45.833 0.00 0.00 0.00 2.57
1496 1515 3.118408 AGTGTGAAAACCTACTGAGTGCA 60.118 43.478 0.00 0.00 0.00 4.57
1621 1641 5.867903 TTGAGAGGCAAGAAAATTTCCAA 57.132 34.783 1.57 0.00 31.55 3.53
1626 1646 4.441792 AGGCAAGAAAATTTCCAACACAC 58.558 39.130 1.57 0.00 0.00 3.82
1647 1667 1.777941 GGGACCCTCTATATAGCCGG 58.222 60.000 2.09 0.00 0.00 6.13
1666 1686 3.363178 CGGACAGCTGTTGTTTTTCTTC 58.637 45.455 22.65 3.41 41.05 2.87
1667 1687 3.363178 GGACAGCTGTTGTTTTTCTTCG 58.637 45.455 22.65 0.00 41.05 3.79
1673 1693 5.173854 CAGCTGTTGTTTTTCTTCGGATTTC 59.826 40.000 5.25 0.00 0.00 2.17
1697 1717 4.886247 TTCTTCGGGTTGTGTTAAAGTG 57.114 40.909 0.00 0.00 0.00 3.16
1698 1718 2.614983 TCTTCGGGTTGTGTTAAAGTGC 59.385 45.455 0.00 0.00 0.00 4.40
1705 1725 3.452474 GTTGTGTTAAAGTGCCATGCAA 58.548 40.909 0.00 0.00 41.47 4.08
1713 1733 3.417069 AAGTGCCATGCAACACTACTA 57.583 42.857 17.54 0.00 46.17 1.82
1777 1797 1.067582 GCCGGGTAGGACAGAATCG 59.932 63.158 2.18 0.00 45.00 3.34
1778 1798 1.740285 CCGGGTAGGACAGAATCGG 59.260 63.158 0.00 0.00 45.00 4.18
1779 1799 1.067582 CGGGTAGGACAGAATCGGC 59.932 63.158 0.00 0.00 0.00 5.54
1780 1800 1.672854 CGGGTAGGACAGAATCGGCA 61.673 60.000 0.00 0.00 0.00 5.69
1781 1801 0.105039 GGGTAGGACAGAATCGGCAG 59.895 60.000 0.00 0.00 0.00 4.85
1782 1802 0.105039 GGTAGGACAGAATCGGCAGG 59.895 60.000 0.00 0.00 0.00 4.85
1783 1803 0.105039 GTAGGACAGAATCGGCAGGG 59.895 60.000 0.00 0.00 0.00 4.45
1784 1804 1.048724 TAGGACAGAATCGGCAGGGG 61.049 60.000 0.00 0.00 0.00 4.79
1785 1805 2.190578 GACAGAATCGGCAGGGGG 59.809 66.667 0.00 0.00 0.00 5.40
1786 1806 4.115199 ACAGAATCGGCAGGGGGC 62.115 66.667 0.00 0.00 43.74 5.80
1796 1816 3.683937 CAGGGGGCCGCTGTTTTG 61.684 66.667 35.27 16.24 39.17 2.44
1797 1817 3.897122 AGGGGGCCGCTGTTTTGA 61.897 61.111 23.80 0.00 0.00 2.69
1798 1818 3.680786 GGGGGCCGCTGTTTTGAC 61.681 66.667 20.51 0.00 0.00 3.18
1799 1819 3.680786 GGGGCCGCTGTTTTGACC 61.681 66.667 13.57 0.00 0.00 4.02
1800 1820 3.680786 GGGCCGCTGTTTTGACCC 61.681 66.667 0.00 0.00 0.00 4.46
1801 1821 2.597510 GGCCGCTGTTTTGACCCT 60.598 61.111 0.00 0.00 0.00 4.34
1802 1822 2.200337 GGCCGCTGTTTTGACCCTT 61.200 57.895 0.00 0.00 0.00 3.95
1803 1823 1.739667 GCCGCTGTTTTGACCCTTT 59.260 52.632 0.00 0.00 0.00 3.11
1804 1824 0.318699 GCCGCTGTTTTGACCCTTTC 60.319 55.000 0.00 0.00 0.00 2.62
1805 1825 0.313987 CCGCTGTTTTGACCCTTTCC 59.686 55.000 0.00 0.00 0.00 3.13
1806 1826 1.318576 CGCTGTTTTGACCCTTTCCT 58.681 50.000 0.00 0.00 0.00 3.36
1807 1827 1.681264 CGCTGTTTTGACCCTTTCCTT 59.319 47.619 0.00 0.00 0.00 3.36
1808 1828 2.882137 CGCTGTTTTGACCCTTTCCTTA 59.118 45.455 0.00 0.00 0.00 2.69
1809 1829 3.316868 CGCTGTTTTGACCCTTTCCTTAA 59.683 43.478 0.00 0.00 0.00 1.85
1810 1830 4.202070 CGCTGTTTTGACCCTTTCCTTAAA 60.202 41.667 0.00 0.00 0.00 1.52
1811 1831 5.666462 GCTGTTTTGACCCTTTCCTTAAAA 58.334 37.500 0.00 0.00 0.00 1.52
1812 1832 6.288294 GCTGTTTTGACCCTTTCCTTAAAAT 58.712 36.000 0.00 0.00 0.00 1.82
1813 1833 6.765989 GCTGTTTTGACCCTTTCCTTAAAATT 59.234 34.615 0.00 0.00 0.00 1.82
1814 1834 7.929245 GCTGTTTTGACCCTTTCCTTAAAATTA 59.071 33.333 0.00 0.00 0.00 1.40
1815 1835 9.825109 CTGTTTTGACCCTTTCCTTAAAATTAA 57.175 29.630 0.00 0.00 0.00 1.40
1816 1836 9.825109 TGTTTTGACCCTTTCCTTAAAATTAAG 57.175 29.630 6.04 6.04 39.80 1.85
1817 1837 8.770828 GTTTTGACCCTTTCCTTAAAATTAAGC 58.229 33.333 7.29 0.00 38.99 3.09
1818 1838 7.849322 TTGACCCTTTCCTTAAAATTAAGCT 57.151 32.000 7.29 0.00 38.99 3.74
1819 1839 8.943594 TTGACCCTTTCCTTAAAATTAAGCTA 57.056 30.769 7.29 0.00 38.99 3.32
1820 1840 8.575649 TGACCCTTTCCTTAAAATTAAGCTAG 57.424 34.615 7.29 4.59 38.99 3.42
1821 1841 8.387813 TGACCCTTTCCTTAAAATTAAGCTAGA 58.612 33.333 7.29 0.00 38.99 2.43
1822 1842 9.409918 GACCCTTTCCTTAAAATTAAGCTAGAT 57.590 33.333 7.29 0.00 38.99 1.98
1857 1877 4.452733 GGTTCCGGCAGACCCTCG 62.453 72.222 0.00 0.00 0.00 4.63
1860 1880 3.578968 TTCCGGCAGACCCTCGAGA 62.579 63.158 15.71 0.00 0.00 4.04
1876 1896 2.022195 CGAGATTCGAACTCTGGGGTA 58.978 52.381 18.90 0.00 43.74 3.69
1989 2013 0.252197 ACTAGTTCGGGCCACCATTC 59.748 55.000 4.39 0.00 36.13 2.67
2096 2121 1.069775 GGGGAGGGGTTCTTGTGTTA 58.930 55.000 0.00 0.00 0.00 2.41
2116 2141 2.054799 AGTGGTTCTGGCTAAGGTTCA 58.945 47.619 0.00 0.00 0.00 3.18
2185 2220 2.284258 AGAGCGAGGCCTTGGTCT 60.284 61.111 38.40 38.40 44.51 3.85
2203 2238 6.139679 TGGTCTTCTTCCCAAATATTGAGT 57.860 37.500 0.00 0.00 0.00 3.41
2239 2274 1.288188 ATTGGCCATTTTGAAGGGGG 58.712 50.000 6.09 0.00 31.67 5.40
2324 2359 1.377202 GCTTGGGCTCCACGATGAA 60.377 57.895 0.00 0.00 30.78 2.57
2387 2422 2.754946 ATGGTTGCCTTTGCTTGATG 57.245 45.000 0.00 0.00 38.71 3.07
2526 2562 1.840635 GAGGTACCCTGCCTTGATCTT 59.159 52.381 8.74 0.00 36.29 2.40
2528 2564 2.649816 AGGTACCCTGCCTTGATCTTTT 59.350 45.455 8.74 0.00 31.04 2.27
2538 2574 2.355108 CCTTGATCTTTTCGCCTCCTCA 60.355 50.000 0.00 0.00 0.00 3.86
2576 2612 0.767375 TTGTGCCTGAGGAAGCTTCT 59.233 50.000 25.05 11.81 0.00 2.85
2780 2816 1.194781 AGAGAAGCGAAGGGGCAAGA 61.195 55.000 0.00 0.00 34.64 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.499162 CGTTATCTGGAAATAAATCATGGTCTC 58.501 37.037 0.00 0.00 0.00 3.36
1 2 8.210946 TCGTTATCTGGAAATAAATCATGGTCT 58.789 33.333 0.00 0.00 0.00 3.85
4 5 8.786898 ACATCGTTATCTGGAAATAAATCATGG 58.213 33.333 0.00 0.00 0.00 3.66
5 6 9.603298 CACATCGTTATCTGGAAATAAATCATG 57.397 33.333 0.00 0.00 0.00 3.07
6 7 8.292448 GCACATCGTTATCTGGAAATAAATCAT 58.708 33.333 0.00 0.00 0.00 2.45
7 8 7.255104 GGCACATCGTTATCTGGAAATAAATCA 60.255 37.037 0.00 0.00 0.00 2.57
8 9 7.041098 AGGCACATCGTTATCTGGAAATAAATC 60.041 37.037 0.00 0.00 0.00 2.17
9 10 6.772716 AGGCACATCGTTATCTGGAAATAAAT 59.227 34.615 0.00 0.00 0.00 1.40
10 11 6.119536 AGGCACATCGTTATCTGGAAATAAA 58.880 36.000 0.00 0.00 0.00 1.40
11 12 5.680619 AGGCACATCGTTATCTGGAAATAA 58.319 37.500 0.00 0.00 0.00 1.40
12 13 5.290493 AGGCACATCGTTATCTGGAAATA 57.710 39.130 0.00 0.00 0.00 1.40
13 14 4.156455 AGGCACATCGTTATCTGGAAAT 57.844 40.909 0.00 0.00 0.00 2.17
14 15 3.627395 AGGCACATCGTTATCTGGAAA 57.373 42.857 0.00 0.00 0.00 3.13
15 16 3.704566 AGTAGGCACATCGTTATCTGGAA 59.295 43.478 0.00 0.00 0.00 3.53
16 17 3.296854 AGTAGGCACATCGTTATCTGGA 58.703 45.455 0.00 0.00 0.00 3.86
17 18 3.068165 TGAGTAGGCACATCGTTATCTGG 59.932 47.826 0.00 0.00 0.00 3.86
18 19 4.307443 TGAGTAGGCACATCGTTATCTG 57.693 45.455 0.00 0.00 0.00 2.90
19 20 4.342378 ACATGAGTAGGCACATCGTTATCT 59.658 41.667 0.00 0.00 0.00 1.98
20 21 4.445718 CACATGAGTAGGCACATCGTTATC 59.554 45.833 0.00 0.00 0.00 1.75
21 22 4.141937 ACACATGAGTAGGCACATCGTTAT 60.142 41.667 0.00 0.00 0.00 1.89
22 23 3.194755 ACACATGAGTAGGCACATCGTTA 59.805 43.478 0.00 0.00 0.00 3.18
23 24 2.028112 ACACATGAGTAGGCACATCGTT 60.028 45.455 0.00 0.00 0.00 3.85
24 25 1.550524 ACACATGAGTAGGCACATCGT 59.449 47.619 0.00 0.00 0.00 3.73
25 26 2.299993 ACACATGAGTAGGCACATCG 57.700 50.000 0.00 0.00 0.00 3.84
26 27 2.939103 GGAACACATGAGTAGGCACATC 59.061 50.000 0.00 0.00 0.00 3.06
27 28 2.573462 AGGAACACATGAGTAGGCACAT 59.427 45.455 0.00 0.00 0.00 3.21
28 29 1.977854 AGGAACACATGAGTAGGCACA 59.022 47.619 0.00 0.00 0.00 4.57
29 30 2.234908 AGAGGAACACATGAGTAGGCAC 59.765 50.000 0.00 0.00 0.00 5.01
30 31 2.497675 GAGAGGAACACATGAGTAGGCA 59.502 50.000 0.00 0.00 0.00 4.75
31 32 2.480416 CGAGAGGAACACATGAGTAGGC 60.480 54.545 0.00 0.00 0.00 3.93
32 33 2.480416 GCGAGAGGAACACATGAGTAGG 60.480 54.545 0.00 0.00 0.00 3.18
33 34 2.480416 GGCGAGAGGAACACATGAGTAG 60.480 54.545 0.00 0.00 0.00 2.57
34 35 1.476891 GGCGAGAGGAACACATGAGTA 59.523 52.381 0.00 0.00 0.00 2.59
35 36 0.247736 GGCGAGAGGAACACATGAGT 59.752 55.000 0.00 0.00 0.00 3.41
36 37 0.247460 TGGCGAGAGGAACACATGAG 59.753 55.000 0.00 0.00 0.00 2.90
37 38 0.684535 TTGGCGAGAGGAACACATGA 59.315 50.000 0.00 0.00 0.00 3.07
38 39 1.522668 TTTGGCGAGAGGAACACATG 58.477 50.000 0.00 0.00 0.00 3.21
39 40 2.270352 TTTTGGCGAGAGGAACACAT 57.730 45.000 0.00 0.00 0.00 3.21
40 41 2.151202 GATTTTGGCGAGAGGAACACA 58.849 47.619 0.00 0.00 0.00 3.72
41 42 2.151202 TGATTTTGGCGAGAGGAACAC 58.849 47.619 0.00 0.00 0.00 3.32
42 43 2.224523 ACTGATTTTGGCGAGAGGAACA 60.225 45.455 0.00 0.00 0.00 3.18
43 44 2.427506 ACTGATTTTGGCGAGAGGAAC 58.572 47.619 0.00 0.00 0.00 3.62
44 45 2.859165 ACTGATTTTGGCGAGAGGAA 57.141 45.000 0.00 0.00 0.00 3.36
45 46 3.369471 CCTTACTGATTTTGGCGAGAGGA 60.369 47.826 0.00 0.00 0.00 3.71
46 47 2.939103 CCTTACTGATTTTGGCGAGAGG 59.061 50.000 0.00 0.00 0.00 3.69
47 48 3.600388 ACCTTACTGATTTTGGCGAGAG 58.400 45.455 0.00 0.00 0.00 3.20
48 49 3.695830 ACCTTACTGATTTTGGCGAGA 57.304 42.857 0.00 0.00 0.00 4.04
49 50 3.751175 TGAACCTTACTGATTTTGGCGAG 59.249 43.478 0.00 0.00 0.00 5.03
50 51 3.500680 GTGAACCTTACTGATTTTGGCGA 59.499 43.478 0.00 0.00 0.00 5.54
51 52 3.252215 TGTGAACCTTACTGATTTTGGCG 59.748 43.478 0.00 0.00 0.00 5.69
52 53 4.518970 TCTGTGAACCTTACTGATTTTGGC 59.481 41.667 0.00 0.00 0.00 4.52
53 54 6.486657 TCTTCTGTGAACCTTACTGATTTTGG 59.513 38.462 0.00 0.00 0.00 3.28
54 55 7.496529 TCTTCTGTGAACCTTACTGATTTTG 57.503 36.000 0.00 0.00 0.00 2.44
55 56 7.391833 GGATCTTCTGTGAACCTTACTGATTTT 59.608 37.037 0.00 0.00 0.00 1.82
56 57 6.881602 GGATCTTCTGTGAACCTTACTGATTT 59.118 38.462 0.00 0.00 0.00 2.17
57 58 6.214412 AGGATCTTCTGTGAACCTTACTGATT 59.786 38.462 0.00 0.00 36.05 2.57
58 59 5.723887 AGGATCTTCTGTGAACCTTACTGAT 59.276 40.000 0.00 0.00 36.05 2.90
59 60 5.047021 CAGGATCTTCTGTGAACCTTACTGA 60.047 44.000 0.00 0.00 37.17 3.41
60 61 5.174395 CAGGATCTTCTGTGAACCTTACTG 58.826 45.833 0.00 0.00 37.17 2.74
61 62 4.323104 GCAGGATCTTCTGTGAACCTTACT 60.323 45.833 0.00 0.00 37.17 2.24
62 63 3.935828 GCAGGATCTTCTGTGAACCTTAC 59.064 47.826 0.00 0.00 37.17 2.34
63 64 3.840666 AGCAGGATCTTCTGTGAACCTTA 59.159 43.478 0.00 0.00 37.17 2.69
64 65 2.641815 AGCAGGATCTTCTGTGAACCTT 59.358 45.455 0.00 0.00 37.17 3.50
65 66 2.027377 CAGCAGGATCTTCTGTGAACCT 60.027 50.000 0.00 0.00 39.39 3.50
66 67 2.027745 TCAGCAGGATCTTCTGTGAACC 60.028 50.000 0.00 0.00 37.12 3.62
67 68 3.325293 TCAGCAGGATCTTCTGTGAAC 57.675 47.619 0.00 0.00 37.12 3.18
68 69 4.067896 GTTTCAGCAGGATCTTCTGTGAA 58.932 43.478 0.00 3.47 37.12 3.18
69 70 3.071457 TGTTTCAGCAGGATCTTCTGTGA 59.929 43.478 0.00 0.00 37.12 3.58
70 71 3.405831 TGTTTCAGCAGGATCTTCTGTG 58.594 45.455 0.00 0.00 37.12 3.66
71 72 3.777106 TGTTTCAGCAGGATCTTCTGT 57.223 42.857 0.00 0.00 37.12 3.41
72 73 4.942483 AGAATGTTTCAGCAGGATCTTCTG 59.058 41.667 0.00 0.00 37.79 3.02
73 74 5.176741 AGAATGTTTCAGCAGGATCTTCT 57.823 39.130 0.00 0.00 0.00 2.85
74 75 5.893897 AAGAATGTTTCAGCAGGATCTTC 57.106 39.130 0.00 0.00 0.00 2.87
75 76 5.884792 CCTAAGAATGTTTCAGCAGGATCTT 59.115 40.000 0.00 0.00 0.00 2.40
76 77 5.435291 CCTAAGAATGTTTCAGCAGGATCT 58.565 41.667 0.00 0.00 0.00 2.75
77 78 4.036144 GCCTAAGAATGTTTCAGCAGGATC 59.964 45.833 0.00 0.00 0.00 3.36
78 79 3.950395 GCCTAAGAATGTTTCAGCAGGAT 59.050 43.478 0.00 0.00 0.00 3.24
79 80 3.009473 AGCCTAAGAATGTTTCAGCAGGA 59.991 43.478 0.00 0.00 0.00 3.86
80 81 3.350833 AGCCTAAGAATGTTTCAGCAGG 58.649 45.455 0.00 0.00 0.00 4.85
81 82 4.005650 TGAGCCTAAGAATGTTTCAGCAG 58.994 43.478 0.00 0.00 0.00 4.24
82 83 4.019792 TGAGCCTAAGAATGTTTCAGCA 57.980 40.909 0.00 0.00 0.00 4.41
83 84 4.379918 GGTTGAGCCTAAGAATGTTTCAGC 60.380 45.833 0.00 0.00 0.00 4.26
84 85 4.761739 TGGTTGAGCCTAAGAATGTTTCAG 59.238 41.667 0.00 0.00 38.35 3.02
85 86 4.724399 TGGTTGAGCCTAAGAATGTTTCA 58.276 39.130 0.00 0.00 38.35 2.69
86 87 5.183904 ACATGGTTGAGCCTAAGAATGTTTC 59.816 40.000 0.00 0.00 38.35 2.78
87 88 5.047802 CACATGGTTGAGCCTAAGAATGTTT 60.048 40.000 0.00 0.00 38.35 2.83
88 89 4.460382 CACATGGTTGAGCCTAAGAATGTT 59.540 41.667 0.00 0.00 38.35 2.71
89 90 4.012374 CACATGGTTGAGCCTAAGAATGT 58.988 43.478 0.00 0.00 38.35 2.71
90 91 3.181493 GCACATGGTTGAGCCTAAGAATG 60.181 47.826 0.00 0.00 38.35 2.67
91 92 3.019564 GCACATGGTTGAGCCTAAGAAT 58.980 45.455 0.00 0.00 38.35 2.40
92 93 2.436417 GCACATGGTTGAGCCTAAGAA 58.564 47.619 0.00 0.00 38.35 2.52
93 94 1.675714 CGCACATGGTTGAGCCTAAGA 60.676 52.381 0.00 0.00 36.24 2.10
94 95 0.729116 CGCACATGGTTGAGCCTAAG 59.271 55.000 0.00 0.00 36.24 2.18
95 96 0.036164 ACGCACATGGTTGAGCCTAA 59.964 50.000 0.00 0.00 36.24 2.69
96 97 0.391130 GACGCACATGGTTGAGCCTA 60.391 55.000 0.00 0.00 36.24 3.93
97 98 1.672356 GACGCACATGGTTGAGCCT 60.672 57.895 0.00 0.00 36.24 4.58
98 99 1.672356 AGACGCACATGGTTGAGCC 60.672 57.895 0.00 0.00 36.24 4.70
99 100 1.499056 CAGACGCACATGGTTGAGC 59.501 57.895 0.00 0.00 36.26 4.26
100 101 1.229975 TGCAGACGCACATGGTTGAG 61.230 55.000 0.00 0.00 45.36 3.02
101 102 1.227793 TGCAGACGCACATGGTTGA 60.228 52.632 0.00 0.00 45.36 3.18
102 103 1.208358 CTGCAGACGCACATGGTTG 59.792 57.895 8.42 0.00 45.36 3.77
103 104 1.968017 CCTGCAGACGCACATGGTT 60.968 57.895 17.39 0.00 45.36 3.67
104 105 2.359107 CCTGCAGACGCACATGGT 60.359 61.111 17.39 0.00 45.36 3.55
105 106 3.129502 CCCTGCAGACGCACATGG 61.130 66.667 17.39 0.38 45.36 3.66
106 107 2.046988 TCCCTGCAGACGCACATG 60.047 61.111 17.39 0.00 45.36 3.21
107 108 2.267006 CTCCCTGCAGACGCACAT 59.733 61.111 17.39 0.00 45.36 3.21
108 109 4.687215 GCTCCCTGCAGACGCACA 62.687 66.667 17.39 0.00 45.36 4.57
109 110 4.385405 AGCTCCCTGCAGACGCAC 62.385 66.667 17.39 0.05 45.36 5.34
118 119 2.219458 CTATTCACATGCAGCTCCCTG 58.781 52.381 0.00 0.00 42.13 4.45
119 120 1.842562 ACTATTCACATGCAGCTCCCT 59.157 47.619 0.00 0.00 0.00 4.20
120 121 1.945394 CACTATTCACATGCAGCTCCC 59.055 52.381 0.00 0.00 0.00 4.30
121 122 2.910199 TCACTATTCACATGCAGCTCC 58.090 47.619 0.00 0.00 0.00 4.70
122 123 3.686241 TGTTCACTATTCACATGCAGCTC 59.314 43.478 0.00 0.00 0.00 4.09
123 124 3.438087 GTGTTCACTATTCACATGCAGCT 59.562 43.478 0.00 0.00 33.04 4.24
124 125 3.438087 AGTGTTCACTATTCACATGCAGC 59.562 43.478 3.47 0.00 34.94 5.25
125 126 4.453478 ACAGTGTTCACTATTCACATGCAG 59.547 41.667 5.11 0.00 34.94 4.41
126 127 4.388485 ACAGTGTTCACTATTCACATGCA 58.612 39.130 5.11 0.00 34.94 3.96
127 128 5.408299 TGTACAGTGTTCACTATTCACATGC 59.592 40.000 0.00 0.00 34.94 4.06
128 129 6.401474 GCTGTACAGTGTTCACTATTCACATG 60.401 42.308 23.44 0.00 34.94 3.21
129 130 5.639506 GCTGTACAGTGTTCACTATTCACAT 59.360 40.000 23.44 0.00 34.94 3.21
130 131 4.988540 GCTGTACAGTGTTCACTATTCACA 59.011 41.667 23.44 0.00 34.94 3.58
131 132 5.230942 AGCTGTACAGTGTTCACTATTCAC 58.769 41.667 23.44 2.30 0.00 3.18
132 133 5.468540 AGCTGTACAGTGTTCACTATTCA 57.531 39.130 23.44 0.00 0.00 2.57
133 134 6.787085 AAAGCTGTACAGTGTTCACTATTC 57.213 37.500 23.44 2.92 0.00 1.75
134 135 8.721478 CAATAAAGCTGTACAGTGTTCACTATT 58.279 33.333 23.44 14.07 0.00 1.73
135 136 7.334421 CCAATAAAGCTGTACAGTGTTCACTAT 59.666 37.037 23.44 9.81 0.00 2.12
136 137 6.649141 CCAATAAAGCTGTACAGTGTTCACTA 59.351 38.462 23.44 8.18 0.00 2.74
137 138 5.470098 CCAATAAAGCTGTACAGTGTTCACT 59.530 40.000 23.44 8.53 0.00 3.41
138 139 5.689819 CCAATAAAGCTGTACAGTGTTCAC 58.310 41.667 23.44 6.29 0.00 3.18
139 140 4.215399 GCCAATAAAGCTGTACAGTGTTCA 59.785 41.667 23.44 0.79 0.00 3.18
140 141 4.379499 GGCCAATAAAGCTGTACAGTGTTC 60.379 45.833 23.44 7.38 0.00 3.18
141 142 3.506067 GGCCAATAAAGCTGTACAGTGTT 59.494 43.478 23.44 18.55 0.00 3.32
142 143 3.081804 GGCCAATAAAGCTGTACAGTGT 58.918 45.455 23.44 9.24 0.00 3.55
143 144 3.081061 TGGCCAATAAAGCTGTACAGTG 58.919 45.455 23.44 12.53 0.00 3.66
144 145 3.433306 TGGCCAATAAAGCTGTACAGT 57.567 42.857 23.44 7.20 0.00 3.55
145 146 3.002656 CGATGGCCAATAAAGCTGTACAG 59.997 47.826 18.93 18.93 0.00 2.74
146 147 2.942376 CGATGGCCAATAAAGCTGTACA 59.058 45.455 10.96 0.00 0.00 2.90
147 148 2.290641 CCGATGGCCAATAAAGCTGTAC 59.709 50.000 10.96 0.00 0.00 2.90
148 149 2.092646 ACCGATGGCCAATAAAGCTGTA 60.093 45.455 10.96 0.00 0.00 2.74
149 150 1.340991 ACCGATGGCCAATAAAGCTGT 60.341 47.619 10.96 0.00 0.00 4.40
150 151 1.334869 GACCGATGGCCAATAAAGCTG 59.665 52.381 10.96 0.00 0.00 4.24
151 152 1.212935 AGACCGATGGCCAATAAAGCT 59.787 47.619 10.96 0.00 0.00 3.74
152 153 1.680338 AGACCGATGGCCAATAAAGC 58.320 50.000 10.96 0.00 0.00 3.51
153 154 4.821805 ACAATAGACCGATGGCCAATAAAG 59.178 41.667 10.96 0.00 0.00 1.85
154 155 4.787551 ACAATAGACCGATGGCCAATAAA 58.212 39.130 10.96 0.00 0.00 1.40
155 156 4.431416 ACAATAGACCGATGGCCAATAA 57.569 40.909 10.96 0.00 0.00 1.40
156 157 4.133820 CAACAATAGACCGATGGCCAATA 58.866 43.478 10.96 0.00 0.00 1.90
157 158 2.951642 CAACAATAGACCGATGGCCAAT 59.048 45.455 10.96 0.00 0.00 3.16
158 159 2.364632 CAACAATAGACCGATGGCCAA 58.635 47.619 10.96 0.00 0.00 4.52
159 160 2.016604 GCAACAATAGACCGATGGCCA 61.017 52.381 8.56 8.56 0.00 5.36
160 161 0.663153 GCAACAATAGACCGATGGCC 59.337 55.000 0.00 0.00 0.00 5.36
161 162 0.304705 CGCAACAATAGACCGATGGC 59.695 55.000 0.00 0.00 0.00 4.40
162 163 1.327460 CACGCAACAATAGACCGATGG 59.673 52.381 0.00 0.00 0.00 3.51
163 164 2.267426 TCACGCAACAATAGACCGATG 58.733 47.619 0.00 0.00 0.00 3.84
164 165 2.665649 TCACGCAACAATAGACCGAT 57.334 45.000 0.00 0.00 0.00 4.18
165 166 2.267426 CATCACGCAACAATAGACCGA 58.733 47.619 0.00 0.00 0.00 4.69
166 167 1.327460 CCATCACGCAACAATAGACCG 59.673 52.381 0.00 0.00 0.00 4.79
167 168 2.627945 TCCATCACGCAACAATAGACC 58.372 47.619 0.00 0.00 0.00 3.85
168 169 4.260784 GGATTCCATCACGCAACAATAGAC 60.261 45.833 0.00 0.00 0.00 2.59
169 170 3.876914 GGATTCCATCACGCAACAATAGA 59.123 43.478 0.00 0.00 0.00 1.98
170 171 3.627123 TGGATTCCATCACGCAACAATAG 59.373 43.478 0.00 0.00 0.00 1.73
171 172 3.376859 GTGGATTCCATCACGCAACAATA 59.623 43.478 9.01 0.00 35.28 1.90
172 173 2.164219 GTGGATTCCATCACGCAACAAT 59.836 45.455 9.01 0.00 35.28 2.71
173 174 1.539388 GTGGATTCCATCACGCAACAA 59.461 47.619 9.01 0.00 35.28 2.83
174 175 1.164411 GTGGATTCCATCACGCAACA 58.836 50.000 9.01 0.00 35.28 3.33
175 176 3.996825 GTGGATTCCATCACGCAAC 57.003 52.632 9.01 0.00 35.28 4.17
180 181 1.560923 CGACTCGTGGATTCCATCAC 58.439 55.000 9.01 0.00 35.28 3.06
181 182 0.179111 GCGACTCGTGGATTCCATCA 60.179 55.000 9.01 0.00 35.28 3.07
182 183 0.876342 GGCGACTCGTGGATTCCATC 60.876 60.000 9.01 1.23 35.28 3.51
183 184 1.144057 GGCGACTCGTGGATTCCAT 59.856 57.895 9.01 0.00 35.28 3.41
184 185 2.225791 CTGGCGACTCGTGGATTCCA 62.226 60.000 0.00 0.00 0.00 3.53
185 186 1.519455 CTGGCGACTCGTGGATTCC 60.519 63.158 0.00 0.00 0.00 3.01
186 187 0.108804 TTCTGGCGACTCGTGGATTC 60.109 55.000 0.00 0.00 0.00 2.52
187 188 0.537188 ATTCTGGCGACTCGTGGATT 59.463 50.000 0.00 0.00 0.00 3.01
188 189 0.179100 CATTCTGGCGACTCGTGGAT 60.179 55.000 0.00 0.00 0.00 3.41
189 190 1.215382 CATTCTGGCGACTCGTGGA 59.785 57.895 0.00 0.00 0.00 4.02
190 191 1.811266 CCATTCTGGCGACTCGTGG 60.811 63.158 0.00 0.00 0.00 4.94
191 192 1.078759 GTCCATTCTGGCGACTCGTG 61.079 60.000 0.00 0.00 37.47 4.35
192 193 1.215647 GTCCATTCTGGCGACTCGT 59.784 57.895 0.00 0.00 37.47 4.18
193 194 1.874019 CGTCCATTCTGGCGACTCG 60.874 63.158 0.00 0.00 38.63 4.18
194 195 0.108804 TTCGTCCATTCTGGCGACTC 60.109 55.000 10.67 0.00 42.48 3.36
195 196 0.320374 TTTCGTCCATTCTGGCGACT 59.680 50.000 10.67 0.00 42.48 4.18
196 197 0.721718 CTTTCGTCCATTCTGGCGAC 59.278 55.000 10.67 0.00 42.48 5.19
197 198 1.019278 GCTTTCGTCCATTCTGGCGA 61.019 55.000 8.07 8.07 41.63 5.54
198 199 1.298157 TGCTTTCGTCCATTCTGGCG 61.298 55.000 4.37 4.37 37.47 5.69
199 200 1.098050 ATGCTTTCGTCCATTCTGGC 58.902 50.000 0.00 0.00 37.47 4.85
200 201 1.202222 GCATGCTTTCGTCCATTCTGG 60.202 52.381 11.37 0.00 39.43 3.86
201 202 1.469703 TGCATGCTTTCGTCCATTCTG 59.530 47.619 20.33 0.00 0.00 3.02
202 203 1.741706 CTGCATGCTTTCGTCCATTCT 59.258 47.619 20.33 0.00 0.00 2.40
203 204 1.202222 CCTGCATGCTTTCGTCCATTC 60.202 52.381 20.33 0.00 0.00 2.67
204 205 0.813184 CCTGCATGCTTTCGTCCATT 59.187 50.000 20.33 0.00 0.00 3.16
205 206 1.033746 CCCTGCATGCTTTCGTCCAT 61.034 55.000 20.33 0.00 0.00 3.41
206 207 1.675310 CCCTGCATGCTTTCGTCCA 60.675 57.895 20.33 0.00 0.00 4.02
207 208 3.056313 GCCCTGCATGCTTTCGTCC 62.056 63.158 20.33 0.00 0.00 4.79
208 209 0.744414 TAGCCCTGCATGCTTTCGTC 60.744 55.000 20.33 3.35 40.23 4.20
209 210 0.745845 CTAGCCCTGCATGCTTTCGT 60.746 55.000 20.33 3.47 40.23 3.85
210 211 0.745845 ACTAGCCCTGCATGCTTTCG 60.746 55.000 20.33 4.80 40.23 3.46
211 212 1.020437 GACTAGCCCTGCATGCTTTC 58.980 55.000 20.33 9.25 40.23 2.62
212 213 0.622665 AGACTAGCCCTGCATGCTTT 59.377 50.000 20.33 4.44 40.23 3.51
213 214 0.107312 CAGACTAGCCCTGCATGCTT 60.107 55.000 20.33 2.05 40.23 3.91
214 215 0.979709 TCAGACTAGCCCTGCATGCT 60.980 55.000 20.33 14.46 42.81 3.79
215 216 0.813210 GTCAGACTAGCCCTGCATGC 60.813 60.000 11.82 11.82 0.00 4.06
216 217 0.829333 AGTCAGACTAGCCCTGCATG 59.171 55.000 0.00 0.00 0.00 4.06
217 218 0.829333 CAGTCAGACTAGCCCTGCAT 59.171 55.000 1.67 0.00 0.00 3.96
218 219 0.251787 TCAGTCAGACTAGCCCTGCA 60.252 55.000 1.67 0.00 0.00 4.41
219 220 1.068434 GATCAGTCAGACTAGCCCTGC 59.932 57.143 1.67 4.32 0.00 4.85
220 221 1.686052 GGATCAGTCAGACTAGCCCTG 59.314 57.143 1.67 6.44 0.00 4.45
221 222 1.289231 TGGATCAGTCAGACTAGCCCT 59.711 52.381 1.67 0.00 0.00 5.19
222 223 1.781786 TGGATCAGTCAGACTAGCCC 58.218 55.000 1.67 5.16 0.00 5.19
223 224 2.961741 TGATGGATCAGTCAGACTAGCC 59.038 50.000 1.67 5.72 32.11 3.93
224 225 4.039004 ACATGATGGATCAGTCAGACTAGC 59.961 45.833 1.67 0.00 40.64 3.42
225 226 5.301298 TGACATGATGGATCAGTCAGACTAG 59.699 44.000 1.67 0.00 40.64 2.57
226 227 5.203528 TGACATGATGGATCAGTCAGACTA 58.796 41.667 1.67 0.00 40.64 2.59
227 228 4.028825 TGACATGATGGATCAGTCAGACT 58.971 43.478 0.00 0.00 40.64 3.24
228 229 4.397481 TGACATGATGGATCAGTCAGAC 57.603 45.455 0.00 0.00 40.64 3.51
229 230 4.407945 ACATGACATGATGGATCAGTCAGA 59.592 41.667 22.19 5.58 42.43 3.27
230 231 4.704965 ACATGACATGATGGATCAGTCAG 58.295 43.478 22.19 14.68 42.43 3.51
231 232 4.765813 ACATGACATGATGGATCAGTCA 57.234 40.909 22.19 17.01 42.85 3.41
232 233 5.604565 TGTACATGACATGATGGATCAGTC 58.395 41.667 22.19 10.10 40.64 3.51
233 234 5.129980 ACTGTACATGACATGATGGATCAGT 59.870 40.000 22.19 18.74 40.64 3.41
234 235 5.608449 ACTGTACATGACATGATGGATCAG 58.392 41.667 22.19 18.24 40.64 2.90
235 236 5.619132 ACTGTACATGACATGATGGATCA 57.381 39.130 22.19 9.64 41.70 2.92
236 237 5.928839 GGTACTGTACATGACATGATGGATC 59.071 44.000 22.19 6.54 37.45 3.36
237 238 5.221722 GGGTACTGTACATGACATGATGGAT 60.222 44.000 22.19 6.92 37.45 3.41
238 239 4.100963 GGGTACTGTACATGACATGATGGA 59.899 45.833 22.19 2.94 37.45 3.41
239 240 4.380531 GGGTACTGTACATGACATGATGG 58.619 47.826 22.19 10.68 37.45 3.51
240 241 4.051237 CGGGTACTGTACATGACATGATG 58.949 47.826 22.19 10.41 37.45 3.07
241 242 3.492656 GCGGGTACTGTACATGACATGAT 60.493 47.826 22.19 8.80 37.45 2.45
242 243 2.159156 GCGGGTACTGTACATGACATGA 60.159 50.000 22.19 3.13 37.45 3.07
243 244 2.159099 AGCGGGTACTGTACATGACATG 60.159 50.000 18.79 14.02 37.45 3.21
244 245 2.108168 AGCGGGTACTGTACATGACAT 58.892 47.619 18.79 0.00 37.45 3.06
245 246 1.203758 CAGCGGGTACTGTACATGACA 59.796 52.381 18.79 0.00 36.83 3.58
246 247 1.922570 CAGCGGGTACTGTACATGAC 58.077 55.000 18.79 5.97 36.83 3.06
247 248 0.174845 GCAGCGGGTACTGTACATGA 59.825 55.000 18.79 0.00 39.96 3.07
248 249 0.810031 GGCAGCGGGTACTGTACATG 60.810 60.000 18.79 11.36 39.96 3.21
249 250 0.976073 AGGCAGCGGGTACTGTACAT 60.976 55.000 18.79 0.08 39.96 2.29
250 251 1.601419 GAGGCAGCGGGTACTGTACA 61.601 60.000 18.79 0.00 39.96 2.90
251 252 1.141234 GAGGCAGCGGGTACTGTAC 59.859 63.158 9.46 9.46 39.96 2.90
252 253 2.412323 CGAGGCAGCGGGTACTGTA 61.412 63.158 0.00 0.00 39.96 2.74
253 254 3.760035 CGAGGCAGCGGGTACTGT 61.760 66.667 0.00 0.00 39.96 3.55
256 257 4.452733 AAGCGAGGCAGCGGGTAC 62.453 66.667 2.13 0.00 43.00 3.34
257 258 4.143333 GAAGCGAGGCAGCGGGTA 62.143 66.667 2.13 0.00 43.00 3.69
259 260 2.650813 AATAGAAGCGAGGCAGCGGG 62.651 60.000 2.13 0.00 43.00 6.13
260 261 0.032130 TAATAGAAGCGAGGCAGCGG 59.968 55.000 2.13 0.00 43.00 5.52
261 262 1.789464 CTTAATAGAAGCGAGGCAGCG 59.211 52.381 0.00 0.00 43.00 5.18
262 263 1.529012 GCTTAATAGAAGCGAGGCAGC 59.471 52.381 0.00 0.00 33.20 5.25
270 271 2.939942 GCTCAGCGCTTAATAGAAGC 57.060 50.000 7.50 4.63 39.77 3.86
297 298 1.376037 ACGGGAGTTTAGCAGCTGC 60.376 57.895 31.53 31.53 43.33 5.25
312 313 2.668212 ATGTGTGCCCACGAACGG 60.668 61.111 0.00 0.00 44.92 4.44
313 314 1.227999 AAGATGTGTGCCCACGAACG 61.228 55.000 0.00 0.00 44.92 3.95
314 315 0.517316 GAAGATGTGTGCCCACGAAC 59.483 55.000 0.00 0.00 44.92 3.95
315 316 0.107643 TGAAGATGTGTGCCCACGAA 59.892 50.000 0.00 0.00 44.92 3.85
316 317 0.324614 ATGAAGATGTGTGCCCACGA 59.675 50.000 0.00 0.00 44.92 4.35
317 318 0.448990 CATGAAGATGTGTGCCCACG 59.551 55.000 0.00 0.00 44.92 4.94
318 319 0.171903 GCATGAAGATGTGTGCCCAC 59.828 55.000 0.00 0.00 42.19 4.61
319 320 0.251253 TGCATGAAGATGTGTGCCCA 60.251 50.000 0.00 0.00 36.79 5.36
320 321 1.066605 GATGCATGAAGATGTGTGCCC 59.933 52.381 2.46 0.00 36.79 5.36
321 322 1.268386 CGATGCATGAAGATGTGTGCC 60.268 52.381 2.46 0.00 36.79 5.01
322 323 1.667212 TCGATGCATGAAGATGTGTGC 59.333 47.619 2.46 0.00 38.05 4.57
323 324 3.787805 GCTTCGATGCATGAAGATGTGTG 60.788 47.826 28.18 12.06 44.42 3.82
324 325 2.353889 GCTTCGATGCATGAAGATGTGT 59.646 45.455 28.18 0.00 44.42 3.72
325 326 2.286831 GGCTTCGATGCATGAAGATGTG 60.287 50.000 28.18 13.03 44.42 3.21
326 327 1.945394 GGCTTCGATGCATGAAGATGT 59.055 47.619 28.18 0.00 44.42 3.06
327 328 1.266175 GGGCTTCGATGCATGAAGATG 59.734 52.381 28.18 17.59 44.42 2.90
328 329 1.134007 TGGGCTTCGATGCATGAAGAT 60.134 47.619 28.18 0.00 44.42 2.40
329 330 0.252761 TGGGCTTCGATGCATGAAGA 59.747 50.000 28.18 14.53 44.42 2.87
330 331 1.315690 ATGGGCTTCGATGCATGAAG 58.684 50.000 22.93 23.45 44.46 3.02
331 332 2.636647 TATGGGCTTCGATGCATGAA 57.363 45.000 22.93 7.64 34.04 2.57
332 333 2.815503 CAATATGGGCTTCGATGCATGA 59.184 45.455 22.93 7.90 34.04 3.07
333 334 2.815503 TCAATATGGGCTTCGATGCATG 59.184 45.455 22.93 11.97 34.04 4.06
334 335 3.144657 TCAATATGGGCTTCGATGCAT 57.855 42.857 22.93 12.31 34.04 3.96
335 336 2.618241 GTTCAATATGGGCTTCGATGCA 59.382 45.455 22.93 5.76 34.04 3.96
336 337 2.349817 CGTTCAATATGGGCTTCGATGC 60.350 50.000 14.55 14.55 0.00 3.91
337 338 2.872245 ACGTTCAATATGGGCTTCGATG 59.128 45.455 0.00 0.00 0.00 3.84
338 339 3.131396 GACGTTCAATATGGGCTTCGAT 58.869 45.455 0.00 0.00 0.00 3.59
339 340 2.167693 AGACGTTCAATATGGGCTTCGA 59.832 45.455 0.00 0.00 0.00 3.71
340 341 2.550978 AGACGTTCAATATGGGCTTCG 58.449 47.619 0.00 0.00 0.00 3.79
341 342 3.489785 CGTAGACGTTCAATATGGGCTTC 59.510 47.826 0.00 0.00 34.11 3.86
342 343 3.131577 TCGTAGACGTTCAATATGGGCTT 59.868 43.478 1.46 0.00 40.80 4.35
343 344 2.691526 TCGTAGACGTTCAATATGGGCT 59.308 45.455 1.46 0.00 40.80 5.19
344 345 3.088194 TCGTAGACGTTCAATATGGGC 57.912 47.619 1.46 0.00 40.80 5.36
345 346 5.856986 CACTATCGTAGACGTTCAATATGGG 59.143 44.000 1.46 0.00 42.51 4.00
346 347 5.856986 CCACTATCGTAGACGTTCAATATGG 59.143 44.000 1.46 0.00 42.51 2.74
347 348 5.856986 CCCACTATCGTAGACGTTCAATATG 59.143 44.000 1.46 0.00 42.51 1.78
348 349 5.533903 ACCCACTATCGTAGACGTTCAATAT 59.466 40.000 1.46 0.00 42.51 1.28
349 350 4.883585 ACCCACTATCGTAGACGTTCAATA 59.116 41.667 1.46 0.00 42.51 1.90
350 351 3.698040 ACCCACTATCGTAGACGTTCAAT 59.302 43.478 1.46 0.00 42.51 2.57
351 352 3.084039 ACCCACTATCGTAGACGTTCAA 58.916 45.455 1.46 0.00 42.51 2.69
352 353 2.715046 ACCCACTATCGTAGACGTTCA 58.285 47.619 1.46 0.00 42.51 3.18
353 354 3.002759 GGTACCCACTATCGTAGACGTTC 59.997 52.174 0.00 0.00 42.51 3.95
354 355 2.945668 GGTACCCACTATCGTAGACGTT 59.054 50.000 0.00 0.00 42.51 3.99
355 356 2.565841 GGTACCCACTATCGTAGACGT 58.434 52.381 0.00 0.00 42.51 4.34
356 357 1.528586 CGGTACCCACTATCGTAGACG 59.471 57.143 6.25 0.00 42.51 4.18
357 358 1.265365 GCGGTACCCACTATCGTAGAC 59.735 57.143 6.25 0.00 42.51 2.59
358 359 1.597742 GCGGTACCCACTATCGTAGA 58.402 55.000 6.25 0.00 45.75 2.59
359 360 0.236711 CGCGGTACCCACTATCGTAG 59.763 60.000 6.25 0.00 0.00 3.51
360 361 0.463654 ACGCGGTACCCACTATCGTA 60.464 55.000 12.47 0.00 0.00 3.43
361 362 0.463654 TACGCGGTACCCACTATCGT 60.464 55.000 12.47 8.90 0.00 3.73
362 363 0.236711 CTACGCGGTACCCACTATCG 59.763 60.000 12.47 3.31 0.00 2.92
363 364 0.039708 GCTACGCGGTACCCACTATC 60.040 60.000 12.47 0.00 0.00 2.08
364 365 0.466922 AGCTACGCGGTACCCACTAT 60.467 55.000 12.47 0.00 0.00 2.12
365 366 1.077501 AGCTACGCGGTACCCACTA 60.078 57.895 12.47 0.00 0.00 2.74
366 367 2.362120 AGCTACGCGGTACCCACT 60.362 61.111 12.47 0.00 0.00 4.00
367 368 2.103736 GAGCTACGCGGTACCCAC 59.896 66.667 12.47 0.00 0.00 4.61
368 369 3.511595 CGAGCTACGCGGTACCCA 61.512 66.667 12.47 0.00 34.51 4.51
369 370 4.261781 CCGAGCTACGCGGTACCC 62.262 72.222 12.47 0.00 41.64 3.69
370 371 4.261781 CCCGAGCTACGCGGTACC 62.262 72.222 12.47 0.16 44.90 3.34
371 372 4.919987 GCCCGAGCTACGCGGTAC 62.920 72.222 12.47 0.00 44.90 3.34
393 394 4.062991 AGCTCGTCTGTAATTCGGTTTTT 58.937 39.130 0.00 0.00 0.00 1.94
394 395 3.660865 AGCTCGTCTGTAATTCGGTTTT 58.339 40.909 0.00 0.00 0.00 2.43
395 396 3.314541 AGCTCGTCTGTAATTCGGTTT 57.685 42.857 0.00 0.00 0.00 3.27
396 397 3.251571 GAAGCTCGTCTGTAATTCGGTT 58.748 45.455 0.00 0.00 0.00 4.44
397 398 2.230508 TGAAGCTCGTCTGTAATTCGGT 59.769 45.455 0.00 0.00 0.00 4.69
398 399 2.876091 TGAAGCTCGTCTGTAATTCGG 58.124 47.619 0.00 0.00 0.00 4.30
399 400 4.903638 TTTGAAGCTCGTCTGTAATTCG 57.096 40.909 0.00 0.00 0.00 3.34
400 401 6.831769 TGATTTTGAAGCTCGTCTGTAATTC 58.168 36.000 0.00 0.00 0.00 2.17
401 402 6.801539 TGATTTTGAAGCTCGTCTGTAATT 57.198 33.333 0.00 0.00 0.00 1.40
406 407 3.126514 AGCATGATTTTGAAGCTCGTCTG 59.873 43.478 0.00 0.00 0.00 3.51
419 420 3.036091 CCTCCCAATCCAAGCATGATTT 58.964 45.455 0.00 0.00 30.16 2.17
422 423 1.297968 TCCTCCCAATCCAAGCATGA 58.702 50.000 0.00 0.00 0.00 3.07
457 458 5.288015 TGTTGAATGTGCGTGATCAAAAAT 58.712 33.333 0.00 0.00 33.93 1.82
481 482 4.808364 TGCATTGTCCAAAGCTTGTAAAAC 59.192 37.500 0.00 0.00 36.15 2.43
486 487 2.868839 GCATGCATTGTCCAAAGCTTGT 60.869 45.455 14.21 0.00 40.19 3.16
504 505 2.158475 TCTTGAAGTTGAACCTGGGCAT 60.158 45.455 0.00 0.00 0.00 4.40
597 604 0.951558 AGGCACCAACGAACAATGTC 59.048 50.000 0.00 0.00 0.00 3.06
603 610 1.566018 CGGAAGAGGCACCAACGAAC 61.566 60.000 0.00 0.00 0.00 3.95
666 677 5.131784 ACAAACCATGTGAAAATTTGGCAT 58.868 33.333 0.00 0.00 41.93 4.40
722 733 1.492176 CCTACAGCTTGGTCATCCCAT 59.508 52.381 0.00 0.00 44.74 4.00
723 734 0.911769 CCTACAGCTTGGTCATCCCA 59.088 55.000 0.00 0.00 43.27 4.37
726 737 3.065925 GCATTTCCTACAGCTTGGTCATC 59.934 47.826 0.00 0.00 0.00 2.92
727 738 3.019564 GCATTTCCTACAGCTTGGTCAT 58.980 45.455 0.00 0.00 0.00 3.06
728 739 2.436417 GCATTTCCTACAGCTTGGTCA 58.564 47.619 0.00 0.00 0.00 4.02
730 741 1.075374 TGGCATTTCCTACAGCTTGGT 59.925 47.619 0.00 0.00 35.26 3.67
739 750 6.601332 CCTCCTATAAAGTTGGCATTTCCTA 58.399 40.000 0.00 0.00 35.26 2.94
767 778 5.248640 ACAAATTCTATGTGTGGACTCCAG 58.751 41.667 0.00 0.00 32.34 3.86
768 779 5.241403 ACAAATTCTATGTGTGGACTCCA 57.759 39.130 0.00 0.00 0.00 3.86
769 780 4.636206 GGACAAATTCTATGTGTGGACTCC 59.364 45.833 0.00 0.00 0.00 3.85
770 781 5.245531 TGGACAAATTCTATGTGTGGACTC 58.754 41.667 0.00 0.00 0.00 3.36
771 782 5.241403 TGGACAAATTCTATGTGTGGACT 57.759 39.130 0.00 0.00 0.00 3.85
772 783 5.957842 TTGGACAAATTCTATGTGTGGAC 57.042 39.130 0.00 0.00 0.00 4.02
773 784 8.821686 ATATTTGGACAAATTCTATGTGTGGA 57.178 30.769 14.68 0.00 40.99 4.02
841 852 3.665190 CTGCCTAAAACTTCGGAAGACT 58.335 45.455 23.74 7.89 41.84 3.24
915 926 0.343372 TTCCACCTATGCCCTCTCCT 59.657 55.000 0.00 0.00 0.00 3.69
967 978 0.770499 TCTTGGTGTCCAGGATGCAA 59.230 50.000 0.00 0.00 34.67 4.08
976 987 2.668550 GTGGCCGTCTTGGTGTCC 60.669 66.667 0.00 0.00 41.21 4.02
985 996 1.133869 GTTAATGCGTGTGGCCGTC 59.866 57.895 0.00 0.00 42.61 4.79
994 1005 1.743995 GCCCTCCGTGTTAATGCGT 60.744 57.895 1.98 0.00 0.00 5.24
1001 1012 1.077501 CCATGATGCCCTCCGTGTT 60.078 57.895 0.00 0.00 0.00 3.32
1035 1046 4.337060 CGTCGCTCACACCGTGGA 62.337 66.667 3.03 0.00 33.87 4.02
1171 1185 0.684805 ACATCCCAGAGAGGTCCGAC 60.685 60.000 0.00 0.00 33.13 4.79
1241 1255 4.195334 GACCCGGGCCAGCATGAT 62.195 66.667 24.08 0.00 39.69 2.45
1266 1280 3.771160 GCCCTCGCTTCTTCCCGA 61.771 66.667 0.00 0.00 0.00 5.14
1377 1394 1.805943 CGACCACTGACATTGCATCAA 59.194 47.619 0.00 0.00 0.00 2.57
1384 1401 0.243907 CGACCTCGACCACTGACATT 59.756 55.000 0.00 0.00 43.02 2.71
1385 1402 0.894184 ACGACCTCGACCACTGACAT 60.894 55.000 0.78 0.00 43.02 3.06
1473 1490 4.100344 TGCACTCAGTAGGTTTTCACACTA 59.900 41.667 0.00 0.00 0.00 2.74
1484 1502 1.448540 CCGGCTTGCACTCAGTAGG 60.449 63.158 0.00 0.00 0.00 3.18
1489 1508 1.220749 GATACCCGGCTTGCACTCA 59.779 57.895 0.00 0.00 0.00 3.41
1496 1515 1.367840 GCGAGATGATACCCGGCTT 59.632 57.895 0.00 0.00 0.00 4.35
1602 1622 4.405358 TGTGTTGGAAATTTTCTTGCCTCT 59.595 37.500 8.93 0.00 0.00 3.69
1621 1641 0.632835 TATAGAGGGTCCCCGTGTGT 59.367 55.000 3.51 0.00 41.95 3.72
1626 1646 1.777941 GGCTATATAGAGGGTCCCCG 58.222 60.000 14.16 0.00 41.95 5.73
1640 1660 0.324943 AACAACAGCTGTCCGGCTAT 59.675 50.000 21.95 0.00 41.00 2.97
1646 1666 3.363178 CGAAGAAAAACAACAGCTGTCC 58.637 45.455 21.95 3.85 37.23 4.02
1647 1667 3.064820 TCCGAAGAAAAACAACAGCTGTC 59.935 43.478 21.95 5.51 37.23 3.51
1666 1686 3.252458 ACAACCCGAAGAAAAGAAATCCG 59.748 43.478 0.00 0.00 0.00 4.18
1667 1687 4.037565 ACACAACCCGAAGAAAAGAAATCC 59.962 41.667 0.00 0.00 0.00 3.01
1673 1693 5.741982 CACTTTAACACAACCCGAAGAAAAG 59.258 40.000 0.00 0.00 0.00 2.27
1697 1717 5.277974 CCATATTGTAGTAGTGTTGCATGGC 60.278 44.000 0.00 0.00 0.00 4.40
1698 1718 5.277974 GCCATATTGTAGTAGTGTTGCATGG 60.278 44.000 0.00 0.00 33.82 3.66
1705 1725 4.278669 CCTCTCGCCATATTGTAGTAGTGT 59.721 45.833 0.00 0.00 0.00 3.55
1713 1733 2.398588 TCTTCCCTCTCGCCATATTGT 58.601 47.619 0.00 0.00 0.00 2.71
1765 1785 1.048724 CCCCTGCCGATTCTGTCCTA 61.049 60.000 0.00 0.00 0.00 2.94
1779 1799 3.683937 CAAAACAGCGGCCCCCTG 61.684 66.667 14.74 14.74 36.41 4.45
1780 1800 3.897122 TCAAAACAGCGGCCCCCT 61.897 61.111 0.00 0.00 0.00 4.79
1781 1801 3.680786 GTCAAAACAGCGGCCCCC 61.681 66.667 0.00 0.00 0.00 5.40
1782 1802 3.680786 GGTCAAAACAGCGGCCCC 61.681 66.667 0.00 0.00 0.00 5.80
1783 1803 3.680786 GGGTCAAAACAGCGGCCC 61.681 66.667 0.00 0.00 0.00 5.80
1784 1804 1.744320 AAAGGGTCAAAACAGCGGCC 61.744 55.000 0.00 0.00 0.00 6.13
1785 1805 0.318699 GAAAGGGTCAAAACAGCGGC 60.319 55.000 0.00 0.00 0.00 6.53
1786 1806 0.313987 GGAAAGGGTCAAAACAGCGG 59.686 55.000 0.00 0.00 0.00 5.52
1787 1807 1.318576 AGGAAAGGGTCAAAACAGCG 58.681 50.000 0.00 0.00 0.00 5.18
1788 1808 4.929819 TTAAGGAAAGGGTCAAAACAGC 57.070 40.909 0.00 0.00 0.00 4.40
1789 1809 9.825109 TTAATTTTAAGGAAAGGGTCAAAACAG 57.175 29.630 0.00 0.00 0.00 3.16
1790 1810 9.825109 CTTAATTTTAAGGAAAGGGTCAAAACA 57.175 29.630 2.71 0.00 37.16 2.83
1791 1811 8.770828 GCTTAATTTTAAGGAAAGGGTCAAAAC 58.229 33.333 11.07 0.00 40.31 2.43
1792 1812 8.710239 AGCTTAATTTTAAGGAAAGGGTCAAAA 58.290 29.630 11.07 0.00 40.31 2.44
1793 1813 8.257602 AGCTTAATTTTAAGGAAAGGGTCAAA 57.742 30.769 11.07 0.00 40.31 2.69
1794 1814 7.849322 AGCTTAATTTTAAGGAAAGGGTCAA 57.151 32.000 11.07 0.00 40.31 3.18
1795 1815 8.387813 TCTAGCTTAATTTTAAGGAAAGGGTCA 58.612 33.333 11.07 0.00 40.31 4.02
1796 1816 8.803397 TCTAGCTTAATTTTAAGGAAAGGGTC 57.197 34.615 11.07 0.00 40.31 4.46
1807 1827 9.692749 CCGACAGTCATATCTAGCTTAATTTTA 57.307 33.333 0.41 0.00 0.00 1.52
1808 1828 8.421784 TCCGACAGTCATATCTAGCTTAATTTT 58.578 33.333 0.41 0.00 0.00 1.82
1809 1829 7.952671 TCCGACAGTCATATCTAGCTTAATTT 58.047 34.615 0.41 0.00 0.00 1.82
1810 1830 7.526142 TCCGACAGTCATATCTAGCTTAATT 57.474 36.000 0.41 0.00 0.00 1.40
1811 1831 7.710676 ATCCGACAGTCATATCTAGCTTAAT 57.289 36.000 0.41 0.00 0.00 1.40
1812 1832 7.526142 AATCCGACAGTCATATCTAGCTTAA 57.474 36.000 0.41 0.00 0.00 1.85
1813 1833 7.526142 AAATCCGACAGTCATATCTAGCTTA 57.474 36.000 0.41 0.00 0.00 3.09
1814 1834 6.412362 AAATCCGACAGTCATATCTAGCTT 57.588 37.500 0.41 0.00 0.00 3.74
1815 1835 5.335269 CGAAATCCGACAGTCATATCTAGCT 60.335 44.000 0.41 0.00 41.76 3.32
1816 1836 4.854291 CGAAATCCGACAGTCATATCTAGC 59.146 45.833 0.41 0.00 41.76 3.42
1817 1837 5.394802 CCGAAATCCGACAGTCATATCTAG 58.605 45.833 0.41 0.00 41.76 2.43
1818 1838 4.217767 CCCGAAATCCGACAGTCATATCTA 59.782 45.833 0.41 0.00 41.76 1.98
1819 1839 3.005897 CCCGAAATCCGACAGTCATATCT 59.994 47.826 0.41 0.00 41.76 1.98
1820 1840 3.243771 ACCCGAAATCCGACAGTCATATC 60.244 47.826 0.41 0.00 41.76 1.63
1821 1841 2.698797 ACCCGAAATCCGACAGTCATAT 59.301 45.455 0.41 0.00 41.76 1.78
1822 1842 2.104967 ACCCGAAATCCGACAGTCATA 58.895 47.619 0.41 0.00 41.76 2.15
1823 1843 0.902531 ACCCGAAATCCGACAGTCAT 59.097 50.000 0.41 0.00 41.76 3.06
1824 1844 0.682852 AACCCGAAATCCGACAGTCA 59.317 50.000 0.41 0.00 41.76 3.41
1825 1845 1.356938 GAACCCGAAATCCGACAGTC 58.643 55.000 0.00 0.00 41.76 3.51
1857 1877 2.223525 CGTACCCCAGAGTTCGAATCTC 60.224 54.545 15.60 15.60 32.95 2.75
1860 1880 0.175073 GCGTACCCCAGAGTTCGAAT 59.825 55.000 0.00 0.00 32.95 3.34
1876 1896 2.809601 GGTGTGATCTTCGCGCGT 60.810 61.111 30.98 10.67 38.20 6.01
1883 1903 4.017407 TGAGTAGGTAGGAGGTGTGATCTT 60.017 45.833 0.00 0.00 0.00 2.40
2096 2121 2.054799 TGAACCTTAGCCAGAACCACT 58.945 47.619 0.00 0.00 0.00 4.00
2203 2238 3.521765 ATTGTTGGCGCCCTTCCCA 62.522 57.895 26.77 10.29 0.00 4.37
2239 2274 5.536916 AGCCAGGATAAGTGTACTAGATGTC 59.463 44.000 0.00 0.00 0.00 3.06
2324 2359 1.599047 CAGAACGGCAGGATGGAGT 59.401 57.895 0.00 0.00 35.86 3.85
2463 2499 1.488705 ATGACCACCGAAGCCAGGAA 61.489 55.000 0.00 0.00 0.00 3.36
2464 2500 1.918293 ATGACCACCGAAGCCAGGA 60.918 57.895 0.00 0.00 0.00 3.86
2477 2513 1.577328 CCGTGACACAAGCCATGACC 61.577 60.000 6.37 0.00 0.00 4.02
2526 2562 2.261671 GCTCGTGAGGAGGCGAAA 59.738 61.111 4.18 0.00 43.36 3.46
2538 2574 3.753434 CTCGTCAGGCTGGCTCGT 61.753 66.667 18.17 0.00 0.00 4.18
2576 2612 4.877619 TTGCGGGGCGGACAACAA 62.878 61.111 0.00 0.00 0.00 2.83
2616 2652 5.181433 CCCATCTTCATCAACATATGCTCAG 59.819 44.000 1.58 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.