Multiple sequence alignment - TraesCS2B01G123700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G123700 chr2B 100.000 5965 0 0 1 5965 91256291 91262255 0.000000e+00 11016.0
1 TraesCS2B01G123700 chr2B 90.774 607 33 6 2634 3230 91277140 91277733 0.000000e+00 789.0
2 TraesCS2B01G123700 chr2B 92.593 135 10 0 2312 2446 91276963 91277097 1.700000e-45 195.0
3 TraesCS2B01G123700 chr2B 97.143 105 2 1 2515 2618 715005044 715005148 6.140000e-40 176.0
4 TraesCS2B01G123700 chr2B 95.238 105 5 0 2514 2618 194824658 194824762 3.700000e-37 167.0
5 TraesCS2B01G123700 chr2B 95.652 46 0 2 5720 5765 202288288 202288331 8.290000e-09 73.1
6 TraesCS2B01G123700 chr2A 93.011 3148 168 28 2645 5773 59556681 59553567 0.000000e+00 4547.0
7 TraesCS2B01G123700 chr2A 83.864 1946 161 72 560 2442 59558566 59556711 0.000000e+00 1712.0
8 TraesCS2B01G123700 chr2A 83.894 416 42 11 139 538 59571661 59571255 2.030000e-99 374.0
9 TraesCS2B01G123700 chr2A 96.175 183 4 2 1423 1605 59568243 59568064 4.520000e-76 296.0
10 TraesCS2B01G123700 chr2A 93.750 192 9 2 5777 5965 59553536 59553345 9.780000e-73 285.0
11 TraesCS2B01G123700 chr2A 86.331 139 11 4 567 704 59569900 59569769 1.730000e-30 145.0
12 TraesCS2B01G123700 chr2D 94.462 1571 73 10 3536 5101 58779905 58781466 0.000000e+00 2407.0
13 TraesCS2B01G123700 chr2D 86.054 1513 119 35 972 2446 58777515 58778973 0.000000e+00 1541.0
14 TraesCS2B01G123700 chr2D 93.379 876 40 11 2641 3507 58779039 58779905 0.000000e+00 1280.0
15 TraesCS2B01G123700 chr2D 86.652 884 79 16 5117 5965 58781598 58782477 0.000000e+00 942.0
16 TraesCS2B01G123700 chr2D 83.662 557 42 21 1 538 58776213 58776739 4.180000e-131 479.0
17 TraesCS2B01G123700 chr2D 95.652 46 0 2 5720 5765 144003497 144003540 8.290000e-09 73.1
18 TraesCS2B01G123700 chr2D 95.652 46 0 2 5720 5765 144419011 144419054 8.290000e-09 73.1
19 TraesCS2B01G123700 chr2D 95.349 43 1 1 5720 5761 143925076 143925118 3.860000e-07 67.6
20 TraesCS2B01G123700 chr4D 84.058 621 97 2 3871 4490 297359716 297359097 1.110000e-166 597.0
21 TraesCS2B01G123700 chr4D 88.703 239 27 0 1106 1344 297384471 297384233 5.850000e-75 292.0
22 TraesCS2B01G123700 chr4B 83.897 621 98 2 3871 4490 368412763 368412144 5.150000e-165 592.0
23 TraesCS2B01G123700 chr4B 93.458 107 5 2 2514 2618 639318396 639318502 2.230000e-34 158.0
24 TraesCS2B01G123700 chr4A 83.651 630 101 2 3862 4490 190834012 190834640 5.150000e-165 592.0
25 TraesCS2B01G123700 chr4A 94.393 107 4 2 2514 2618 712539738 712539632 4.780000e-36 163.0
26 TraesCS2B01G123700 chr7D 87.413 286 32 4 1118 1401 504174807 504175090 5.770000e-85 326.0
27 TraesCS2B01G123700 chr7D 92.453 53 4 0 1542 1594 504175282 504175334 6.410000e-10 76.8
28 TraesCS2B01G123700 chr7D 90.566 53 5 0 1542 1594 169914911 169914859 2.980000e-08 71.3
29 TraesCS2B01G123700 chr7D 94.872 39 1 1 1544 1581 575508208 575508170 6.460000e-05 60.2
30 TraesCS2B01G123700 chr7B 87.063 286 33 4 1118 1401 532275747 532276030 2.680000e-83 320.0
31 TraesCS2B01G123700 chr7B 92.453 53 4 0 1542 1594 532276222 532276274 6.410000e-10 76.8
32 TraesCS2B01G123700 chr7A 87.063 286 33 4 1118 1401 571701702 571701985 2.680000e-83 320.0
33 TraesCS2B01G123700 chr7A 92.453 53 4 0 1542 1594 571702177 571702229 6.410000e-10 76.8
34 TraesCS2B01G123700 chr7A 90.566 53 5 0 1542 1594 172468745 172468693 2.980000e-08 71.3
35 TraesCS2B01G123700 chr6D 88.889 252 25 1 1134 1382 381999834 381999583 2.090000e-79 307.0
36 TraesCS2B01G123700 chr6B 88.889 252 25 1 1134 1382 570982482 570982231 2.090000e-79 307.0
37 TraesCS2B01G123700 chr6B 93.519 108 5 2 2513 2618 621098888 621098781 6.190000e-35 159.0
38 TraesCS2B01G123700 chr6B 93.458 107 5 2 2514 2618 704008907 704009013 2.230000e-34 158.0
39 TraesCS2B01G123700 chr6A 88.889 252 25 1 1134 1382 523949628 523949377 2.090000e-79 307.0
40 TraesCS2B01G123700 chr1B 94.444 108 4 2 2513 2618 654593313 654593206 1.330000e-36 165.0
41 TraesCS2B01G123700 chr1B 92.593 108 6 2 2513 2618 636193905 636194012 2.880000e-33 154.0
42 TraesCS2B01G123700 chr5B 93.636 110 4 3 2512 2618 522808470 522808579 1.720000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G123700 chr2B 91256291 91262255 5964 False 11016.000000 11016 100.000000 1 5965 1 chr2B.!!$F1 5964
1 TraesCS2B01G123700 chr2B 91276963 91277733 770 False 492.000000 789 91.683500 2312 3230 2 chr2B.!!$F5 918
2 TraesCS2B01G123700 chr2A 59553345 59558566 5221 True 2181.333333 4547 90.208333 560 5965 3 chr2A.!!$R1 5405
3 TraesCS2B01G123700 chr2A 59568064 59571661 3597 True 271.666667 374 88.800000 139 1605 3 chr2A.!!$R2 1466
4 TraesCS2B01G123700 chr2D 58776213 58782477 6264 False 1329.800000 2407 88.841800 1 5965 5 chr2D.!!$F4 5964
5 TraesCS2B01G123700 chr4D 297359097 297359716 619 True 597.000000 597 84.058000 3871 4490 1 chr4D.!!$R1 619
6 TraesCS2B01G123700 chr4B 368412144 368412763 619 True 592.000000 592 83.897000 3871 4490 1 chr4B.!!$R1 619
7 TraesCS2B01G123700 chr4A 190834012 190834640 628 False 592.000000 592 83.651000 3862 4490 1 chr4A.!!$F1 628
8 TraesCS2B01G123700 chr7D 504174807 504175334 527 False 201.400000 326 89.933000 1118 1594 2 chr7D.!!$F1 476

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 144 0.036164 TGTTTGGGCATCGTGCTACT 59.964 50.0 9.31 0.00 44.28 2.57 F
658 2050 0.037590 CCCACCATGTTTTCCTCGGA 59.962 55.0 0.00 0.00 0.00 4.55 F
1596 3976 0.251474 CCCCCGTCATCTCCGGTATA 60.251 60.0 0.00 0.00 43.98 1.47 F
2551 4989 0.173481 GCTTGCCCCTTCCGATTTTC 59.827 55.0 0.00 0.00 0.00 2.29 F
2711 5162 0.821517 ATGCCGTCACTCCGATAACA 59.178 50.0 0.00 0.00 0.00 2.41 F
4538 6999 0.599204 AGAACGCGTTCACCGTCATT 60.599 50.0 42.89 23.86 41.84 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2006 4403 0.392336 AATTTTGAGCCGCCAAAGCA 59.608 45.000 6.98 0.00 39.83 3.91 R
2532 4970 0.173481 GAAAATCGGAAGGGGCAAGC 59.827 55.000 0.00 0.00 0.00 4.01 R
2610 5048 1.344763 AGGTGACAGACAACTGGTAGC 59.655 52.381 0.00 0.00 45.73 3.58 R
3656 6117 0.464373 TGATGATCGCTTGGCTTCCC 60.464 55.000 0.00 0.00 0.00 3.97 R
4638 7099 0.452784 GCGAGTTCAATGGTGTTCGC 60.453 55.000 0.81 0.81 40.22 4.70 R
5593 8194 0.381801 CCATGCGGGCTTCACAATAC 59.618 55.000 0.00 0.00 0.00 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.819288 TCTTCCACTGATCCAGTCGAC 59.181 52.381 7.70 7.70 43.43 4.20
32 33 2.630592 GATCCAGTCGACCTTCCGGC 62.631 65.000 13.01 0.00 0.00 6.13
36 37 2.356673 GTCGACCTTCCGGCGTTT 60.357 61.111 3.51 0.00 33.49 3.60
51 60 2.426738 GGCGTTTTCCATCATCATTCCA 59.573 45.455 0.00 0.00 0.00 3.53
68 77 2.674033 ATCGCCAGCTTGCTGCAA 60.674 55.556 15.16 15.16 45.94 4.08
83 92 2.061773 CTGCAACAGAAGGTCAGTACG 58.938 52.381 0.00 0.00 32.44 3.67
84 93 1.411246 TGCAACAGAAGGTCAGTACGT 59.589 47.619 0.00 0.00 0.00 3.57
85 94 2.059541 GCAACAGAAGGTCAGTACGTC 58.940 52.381 0.00 0.00 0.00 4.34
86 95 2.545113 GCAACAGAAGGTCAGTACGTCA 60.545 50.000 0.00 0.00 0.00 4.35
87 96 3.309388 CAACAGAAGGTCAGTACGTCAG 58.691 50.000 0.00 0.00 0.00 3.51
88 97 1.887198 ACAGAAGGTCAGTACGTCAGG 59.113 52.381 0.00 0.00 0.00 3.86
89 98 2.160205 CAGAAGGTCAGTACGTCAGGA 58.840 52.381 0.00 0.00 0.00 3.86
90 99 2.557056 CAGAAGGTCAGTACGTCAGGAA 59.443 50.000 0.00 0.00 0.00 3.36
91 100 3.005472 CAGAAGGTCAGTACGTCAGGAAA 59.995 47.826 0.00 0.00 0.00 3.13
92 101 3.833070 AGAAGGTCAGTACGTCAGGAAAT 59.167 43.478 0.00 0.00 0.00 2.17
93 102 4.283722 AGAAGGTCAGTACGTCAGGAAATT 59.716 41.667 0.00 0.00 0.00 1.82
95 104 4.566987 AGGTCAGTACGTCAGGAAATTTC 58.433 43.478 9.83 9.83 0.00 2.17
111 120 6.765089 GGAAATTTCCATTTCTCGAAAATGC 58.235 36.000 28.76 0.00 45.45 3.56
112 121 6.591448 GGAAATTTCCATTTCTCGAAAATGCT 59.409 34.615 28.76 7.82 45.45 3.79
115 124 8.862550 AATTTCCATTTCTCGAAAATGCTATC 57.137 30.769 19.19 0.00 36.56 2.08
117 126 6.609237 TCCATTTCTCGAAAATGCTATCTG 57.391 37.500 19.19 10.34 36.56 2.90
123 132 4.635765 TCTCGAAAATGCTATCTGTTTGGG 59.364 41.667 0.00 0.00 0.00 4.12
124 133 3.128589 TCGAAAATGCTATCTGTTTGGGC 59.871 43.478 0.00 0.00 0.00 5.36
133 142 0.323302 TCTGTTTGGGCATCGTGCTA 59.677 50.000 9.31 0.00 44.28 3.49
135 144 0.036164 TGTTTGGGCATCGTGCTACT 59.964 50.000 9.31 0.00 44.28 2.57
136 145 1.165270 GTTTGGGCATCGTGCTACTT 58.835 50.000 9.31 0.00 44.28 2.24
137 146 1.539827 GTTTGGGCATCGTGCTACTTT 59.460 47.619 9.31 0.00 44.28 2.66
146 155 4.755411 CATCGTGCTACTTTCTTCCCTTA 58.245 43.478 0.00 0.00 0.00 2.69
168 177 4.683832 ACAACGAAAGATAAGGATCTCCG 58.316 43.478 0.00 7.63 41.87 4.63
230 243 5.043737 GATAGATCTACTATCGCCTCCCT 57.956 47.826 4.10 0.00 44.99 4.20
231 244 3.359695 AGATCTACTATCGCCTCCCTC 57.640 52.381 0.00 0.00 0.00 4.30
232 245 2.916934 AGATCTACTATCGCCTCCCTCT 59.083 50.000 0.00 0.00 0.00 3.69
233 246 3.332485 AGATCTACTATCGCCTCCCTCTT 59.668 47.826 0.00 0.00 0.00 2.85
234 247 3.143211 TCTACTATCGCCTCCCTCTTC 57.857 52.381 0.00 0.00 0.00 2.87
235 248 2.164338 CTACTATCGCCTCCCTCTTCC 58.836 57.143 0.00 0.00 0.00 3.46
236 249 0.558712 ACTATCGCCTCCCTCTTCCT 59.441 55.000 0.00 0.00 0.00 3.36
248 261 2.422093 CCCTCTTCCTCCCTGCATTAAC 60.422 54.545 0.00 0.00 0.00 2.01
278 291 5.893897 AGAATGCCAAGATTCTTCTTCAC 57.106 39.130 0.00 0.00 39.23 3.18
340 353 1.764723 TGACAGGCTGAGTGATATGGG 59.235 52.381 23.66 0.00 0.00 4.00
341 354 1.765314 GACAGGCTGAGTGATATGGGT 59.235 52.381 23.66 0.00 0.00 4.51
403 422 4.359434 TTCATGGTTGTAGTTGGTGCTA 57.641 40.909 0.00 0.00 0.00 3.49
458 481 2.092968 CGGACCAATCAATCTTCTCCCA 60.093 50.000 0.00 0.00 0.00 4.37
483 506 8.127327 CAGCCAAACTCTCAAAAGATATATGTG 58.873 37.037 0.00 0.00 0.00 3.21
484 507 7.831193 AGCCAAACTCTCAAAAGATATATGTGT 59.169 33.333 0.00 0.00 0.00 3.72
485 508 9.109393 GCCAAACTCTCAAAAGATATATGTGTA 57.891 33.333 0.00 0.00 0.00 2.90
518 549 1.394917 CTTTTTCGTCCAGGCATCTCG 59.605 52.381 0.00 0.00 0.00 4.04
555 1938 0.336392 TGAAGCAGCTAGGGAGAGGA 59.664 55.000 0.00 0.00 0.00 3.71
556 1939 1.039856 GAAGCAGCTAGGGAGAGGAG 58.960 60.000 0.00 0.00 0.00 3.69
557 1940 0.633921 AAGCAGCTAGGGAGAGGAGA 59.366 55.000 0.00 0.00 0.00 3.71
558 1941 0.185901 AGCAGCTAGGGAGAGGAGAG 59.814 60.000 0.00 0.00 0.00 3.20
559 1942 0.827507 GCAGCTAGGGAGAGGAGAGG 60.828 65.000 0.00 0.00 0.00 3.69
560 1943 0.850100 CAGCTAGGGAGAGGAGAGGA 59.150 60.000 0.00 0.00 0.00 3.71
561 1944 1.149101 AGCTAGGGAGAGGAGAGGAG 58.851 60.000 0.00 0.00 0.00 3.69
562 1945 0.850784 GCTAGGGAGAGGAGAGGAGT 59.149 60.000 0.00 0.00 0.00 3.85
563 1946 1.478654 GCTAGGGAGAGGAGAGGAGTG 60.479 61.905 0.00 0.00 0.00 3.51
572 1955 1.226831 GAGAGGAGTGCGCACTAGC 60.227 63.158 40.77 30.07 42.66 3.42
658 2050 0.037590 CCCACCATGTTTTCCTCGGA 59.962 55.000 0.00 0.00 0.00 4.55
659 2051 1.340991 CCCACCATGTTTTCCTCGGAT 60.341 52.381 0.00 0.00 0.00 4.18
660 2052 2.092646 CCCACCATGTTTTCCTCGGATA 60.093 50.000 0.00 0.00 0.00 2.59
661 2053 3.435026 CCCACCATGTTTTCCTCGGATAT 60.435 47.826 0.00 0.00 0.00 1.63
662 2054 3.565482 CCACCATGTTTTCCTCGGATATG 59.435 47.826 0.00 0.00 0.00 1.78
663 2055 4.199310 CACCATGTTTTCCTCGGATATGT 58.801 43.478 0.00 0.00 0.00 2.29
664 2056 5.364778 CACCATGTTTTCCTCGGATATGTA 58.635 41.667 0.00 0.00 0.00 2.29
665 2057 5.997746 CACCATGTTTTCCTCGGATATGTAT 59.002 40.000 0.00 0.00 0.00 2.29
666 2058 5.997746 ACCATGTTTTCCTCGGATATGTATG 59.002 40.000 0.00 0.00 0.00 2.39
667 2059 5.412594 CCATGTTTTCCTCGGATATGTATGG 59.587 44.000 0.00 0.00 0.00 2.74
668 2060 5.880164 TGTTTTCCTCGGATATGTATGGA 57.120 39.130 0.00 0.00 0.00 3.41
669 2061 5.853936 TGTTTTCCTCGGATATGTATGGAG 58.146 41.667 0.00 0.00 0.00 3.86
703 2419 4.689062 TCATTCCCCTCCACTATCTATCC 58.311 47.826 0.00 0.00 0.00 2.59
775 2756 8.848182 CCTTGAATCCTTCGTATACTACTAGTT 58.152 37.037 0.00 0.00 0.00 2.24
821 2818 2.911484 CGAGGTGTCCGTCCGTTCA 61.911 63.158 0.00 0.00 0.00 3.18
824 2821 1.203052 GAGGTGTCCGTCCGTTCATTA 59.797 52.381 0.00 0.00 0.00 1.90
825 2822 1.067354 AGGTGTCCGTCCGTTCATTAC 60.067 52.381 0.00 0.00 0.00 1.89
855 2856 1.538849 GGCAAACTTGTTCTTGGCAGG 60.539 52.381 3.76 0.00 44.95 4.85
857 2858 2.418609 GCAAACTTGTTCTTGGCAGGTT 60.419 45.455 0.00 0.00 37.68 3.50
858 2859 3.447742 CAAACTTGTTCTTGGCAGGTTC 58.552 45.455 0.00 0.00 35.56 3.62
876 2877 5.521735 CAGGTTCTTCAATCTATTCGACTGG 59.478 44.000 0.00 0.00 0.00 4.00
882 2883 7.033791 TCTTCAATCTATTCGACTGGTAACAC 58.966 38.462 0.00 0.00 46.17 3.32
883 2884 6.525578 TCAATCTATTCGACTGGTAACACT 57.474 37.500 0.00 0.00 46.17 3.55
922 2927 1.004560 TCTGTTCTTGGAGCCAGCG 60.005 57.895 0.00 0.00 0.00 5.18
943 2957 3.134458 GGAAGGAAATCATAGGAGCGTG 58.866 50.000 0.00 0.00 0.00 5.34
1032 3047 1.051812 AGGTCAGCCATAGATTCCCG 58.948 55.000 0.00 0.00 37.19 5.14
1043 3060 6.015940 AGCCATAGATTCCCGAATTCAAAATC 60.016 38.462 6.22 10.46 0.00 2.17
1057 3074 7.486407 AATTCAAAATCAAGCAAGGTAGGAT 57.514 32.000 0.00 0.00 0.00 3.24
1058 3075 8.593945 AATTCAAAATCAAGCAAGGTAGGATA 57.406 30.769 0.00 0.00 0.00 2.59
1060 3077 6.122277 TCAAAATCAAGCAAGGTAGGATAGG 58.878 40.000 0.00 0.00 0.00 2.57
1061 3078 5.975988 AAATCAAGCAAGGTAGGATAGGA 57.024 39.130 0.00 0.00 0.00 2.94
1064 3081 3.052109 TCAAGCAAGGTAGGATAGGAGGA 60.052 47.826 0.00 0.00 0.00 3.71
1093 3110 2.585330 TCAATGCTGAAGCTGGTTTCA 58.415 42.857 3.61 0.48 42.66 2.69
1095 3112 3.575256 TCAATGCTGAAGCTGGTTTCAAT 59.425 39.130 3.61 0.00 42.66 2.57
1104 3127 1.890876 CTGGTTTCAATCGGGTGTCA 58.109 50.000 0.00 0.00 0.00 3.58
1108 3131 2.489971 GTTTCAATCGGGTGTCACAGA 58.510 47.619 5.12 4.12 0.00 3.41
1596 3976 0.251474 CCCCCGTCATCTCCGGTATA 60.251 60.000 0.00 0.00 43.98 1.47
1607 3987 7.412781 CGTCATCTCCGGTATATACTACTTCAC 60.413 44.444 12.54 1.02 0.00 3.18
1612 3992 5.771666 TCCGGTATATACTACTTCACCCTTG 59.228 44.000 12.54 0.00 0.00 3.61
1616 3996 7.201848 CGGTATATACTACTTCACCCTTGTTCA 60.202 40.741 12.54 0.00 0.00 3.18
1637 4017 5.738909 TCAGTCCATCCATCTTCTTTCTTC 58.261 41.667 0.00 0.00 0.00 2.87
1646 4026 7.944729 TCCATCTTCTTTCTTCTTTATTGGG 57.055 36.000 0.00 0.00 0.00 4.12
1647 4027 6.891908 TCCATCTTCTTTCTTCTTTATTGGGG 59.108 38.462 0.00 0.00 0.00 4.96
1648 4028 6.097412 CCATCTTCTTTCTTCTTTATTGGGGG 59.903 42.308 0.00 0.00 0.00 5.40
1681 4061 6.808008 TTATTTCTTCAGTTGGCTCTTCAG 57.192 37.500 0.00 0.00 0.00 3.02
1682 4062 3.845781 TTCTTCAGTTGGCTCTTCAGT 57.154 42.857 0.00 0.00 0.00 3.41
1683 4063 3.845781 TCTTCAGTTGGCTCTTCAGTT 57.154 42.857 0.00 0.00 0.00 3.16
1684 4064 3.733337 TCTTCAGTTGGCTCTTCAGTTC 58.267 45.455 0.00 0.00 0.00 3.01
1685 4065 3.134623 TCTTCAGTTGGCTCTTCAGTTCA 59.865 43.478 0.00 0.00 0.00 3.18
1869 4266 4.462508 TTTTGTCTGCAACCAATGAACA 57.537 36.364 0.00 0.00 33.82 3.18
1870 4267 3.713858 TTGTCTGCAACCAATGAACAG 57.286 42.857 0.00 0.00 0.00 3.16
1871 4268 1.955778 TGTCTGCAACCAATGAACAGG 59.044 47.619 0.00 0.00 0.00 4.00
1887 4284 5.784177 TGAACAGGAGAGTACTGAACAATC 58.216 41.667 0.00 0.00 39.24 2.67
1888 4285 4.810191 ACAGGAGAGTACTGAACAATCC 57.190 45.455 0.00 0.00 39.24 3.01
1889 4286 4.160329 ACAGGAGAGTACTGAACAATCCA 58.840 43.478 0.00 0.00 37.41 3.41
1943 4340 9.745880 ACTGATAAGTTGATACGGTACTTTATG 57.254 33.333 0.00 0.00 34.26 1.90
1950 4347 8.638873 AGTTGATACGGTACTTTATGATGATGA 58.361 33.333 0.00 0.00 0.00 2.92
1983 4380 5.116180 AGCAAAACTGGTAAAAGCCTTTTC 58.884 37.500 5.55 0.00 34.19 2.29
1984 4381 5.104941 AGCAAAACTGGTAAAAGCCTTTTCT 60.105 36.000 5.55 0.00 34.19 2.52
2006 4403 6.177610 TCTCGGAATTAGCAAAACTGGTAAT 58.822 36.000 4.22 4.22 42.20 1.89
2008 4405 4.798387 CGGAATTAGCAAAACTGGTAATGC 59.202 41.667 9.60 8.03 40.32 3.56
2021 4418 0.525761 GTAATGCTTTGGCGGCTCAA 59.474 50.000 11.43 1.99 42.25 3.02
2022 4419 1.067915 GTAATGCTTTGGCGGCTCAAA 60.068 47.619 11.43 13.43 42.25 2.69
2024 4421 0.609662 ATGCTTTGGCGGCTCAAAAT 59.390 45.000 11.43 6.66 42.25 1.82
2031 4428 4.695217 TTGGCGGCTCAAAATTAGTTAG 57.305 40.909 11.43 0.00 0.00 2.34
2064 4461 3.279434 ACTGTGAGGAAAAGTTGTCACC 58.721 45.455 0.00 0.00 38.86 4.02
2095 4496 4.017499 ACTTCACTTACCTGGCCCAAATAT 60.017 41.667 0.00 0.00 0.00 1.28
2104 4505 2.431782 CTGGCCCAAATATTCCCAGTTG 59.568 50.000 0.00 0.00 38.55 3.16
2152 4555 9.725019 ATGTTGACTTGTATGTCTGAATTTCTA 57.275 29.630 0.00 0.00 37.79 2.10
2171 4591 6.552859 TTCTATCACAAATCGAACTGCAAA 57.447 33.333 0.00 0.00 0.00 3.68
2240 4660 8.690203 TTCAGTTTCAGAAATATTCCAGACAA 57.310 30.769 0.00 0.00 0.00 3.18
2245 4665 4.635765 TCAGAAATATTCCAGACAAAGCCG 59.364 41.667 0.00 0.00 0.00 5.52
2246 4666 3.947834 AGAAATATTCCAGACAAAGCCGG 59.052 43.478 0.00 0.00 0.00 6.13
2248 4668 3.864789 ATATTCCAGACAAAGCCGGAT 57.135 42.857 5.05 0.00 0.00 4.18
2249 4669 2.514458 ATTCCAGACAAAGCCGGATT 57.486 45.000 5.05 0.00 0.00 3.01
2276 4712 6.918043 CTGAATTTCAGTTTTCATTCCGTC 57.082 37.500 16.71 0.00 39.58 4.79
2280 4716 5.584253 TTTCAGTTTTCATTCCGTCCAAA 57.416 34.783 0.00 0.00 0.00 3.28
2281 4717 4.829064 TCAGTTTTCATTCCGTCCAAAG 57.171 40.909 0.00 0.00 0.00 2.77
2282 4718 4.204012 TCAGTTTTCATTCCGTCCAAAGT 58.796 39.130 0.00 0.00 0.00 2.66
2283 4719 5.369833 TCAGTTTTCATTCCGTCCAAAGTA 58.630 37.500 0.00 0.00 0.00 2.24
2284 4720 5.237779 TCAGTTTTCATTCCGTCCAAAGTAC 59.762 40.000 0.00 0.00 0.00 2.73
2285 4721 4.517832 AGTTTTCATTCCGTCCAAAGTACC 59.482 41.667 0.00 0.00 0.00 3.34
2286 4722 3.773418 TTCATTCCGTCCAAAGTACCA 57.227 42.857 0.00 0.00 0.00 3.25
2287 4723 3.992943 TCATTCCGTCCAAAGTACCAT 57.007 42.857 0.00 0.00 0.00 3.55
2288 4724 5.423704 TTCATTCCGTCCAAAGTACCATA 57.576 39.130 0.00 0.00 0.00 2.74
2289 4725 5.423704 TCATTCCGTCCAAAGTACCATAA 57.576 39.130 0.00 0.00 0.00 1.90
2290 4726 5.996644 TCATTCCGTCCAAAGTACCATAAT 58.003 37.500 0.00 0.00 0.00 1.28
2291 4727 6.419791 TCATTCCGTCCAAAGTACCATAATT 58.580 36.000 0.00 0.00 0.00 1.40
2292 4728 7.566569 TCATTCCGTCCAAAGTACCATAATTA 58.433 34.615 0.00 0.00 0.00 1.40
2293 4729 8.047911 TCATTCCGTCCAAAGTACCATAATTAA 58.952 33.333 0.00 0.00 0.00 1.40
2294 4730 8.846211 CATTCCGTCCAAAGTACCATAATTAAT 58.154 33.333 0.00 0.00 0.00 1.40
2295 4731 8.810990 TTCCGTCCAAAGTACCATAATTAATT 57.189 30.769 5.89 5.89 0.00 1.40
2296 4732 9.902684 TTCCGTCCAAAGTACCATAATTAATTA 57.097 29.630 10.27 10.27 0.00 1.40
2297 4733 9.902684 TCCGTCCAAAGTACCATAATTAATTAA 57.097 29.630 11.80 0.00 0.00 1.40
2446 4884 5.470368 CGACTGAAGTGACCAGAAATTCTA 58.530 41.667 0.00 0.00 35.69 2.10
2447 4885 6.102663 CGACTGAAGTGACCAGAAATTCTAT 58.897 40.000 0.00 0.00 35.69 1.98
2448 4886 6.591834 CGACTGAAGTGACCAGAAATTCTATT 59.408 38.462 0.00 0.00 35.69 1.73
2449 4887 7.759886 CGACTGAAGTGACCAGAAATTCTATTA 59.240 37.037 0.00 0.00 35.69 0.98
2479 4917 8.881743 TGATGAAATTTGGTTGAAAGTGAAAAG 58.118 29.630 0.00 0.00 0.00 2.27
2480 4918 8.791327 ATGAAATTTGGTTGAAAGTGAAAAGT 57.209 26.923 0.00 0.00 0.00 2.66
2481 4919 9.883142 ATGAAATTTGGTTGAAAGTGAAAAGTA 57.117 25.926 0.00 0.00 0.00 2.24
2482 4920 9.145865 TGAAATTTGGTTGAAAGTGAAAAGTAC 57.854 29.630 0.00 0.00 0.00 2.73
2483 4921 9.366216 GAAATTTGGTTGAAAGTGAAAAGTACT 57.634 29.630 0.00 0.00 0.00 2.73
2485 4923 9.797556 AATTTGGTTGAAAGTGAAAAGTACTAC 57.202 29.630 0.00 0.00 0.00 2.73
2486 4924 8.570068 TTTGGTTGAAAGTGAAAAGTACTACT 57.430 30.769 0.00 0.00 0.00 2.57
2487 4925 7.548196 TGGTTGAAAGTGAAAAGTACTACTG 57.452 36.000 0.00 0.00 0.00 2.74
2512 4950 5.909621 TTATACTAGTTGTCTGTCGCCTT 57.090 39.130 0.00 0.00 0.00 4.35
2538 4976 4.535526 TTTTATCAAAGAAGGGCTTGCC 57.464 40.909 2.49 2.49 36.80 4.52
2539 4977 2.143876 TATCAAAGAAGGGCTTGCCC 57.856 50.000 22.29 22.29 36.80 5.36
2548 4986 2.043953 GGCTTGCCCCTTCCGATT 60.044 61.111 0.00 0.00 0.00 3.34
2549 4987 1.682344 GGCTTGCCCCTTCCGATTT 60.682 57.895 0.00 0.00 0.00 2.17
2550 4988 1.257750 GGCTTGCCCCTTCCGATTTT 61.258 55.000 0.00 0.00 0.00 1.82
2551 4989 0.173481 GCTTGCCCCTTCCGATTTTC 59.827 55.000 0.00 0.00 0.00 2.29
2552 4990 1.544724 CTTGCCCCTTCCGATTTTCA 58.455 50.000 0.00 0.00 0.00 2.69
2553 4991 2.102578 CTTGCCCCTTCCGATTTTCAT 58.897 47.619 0.00 0.00 0.00 2.57
2554 4992 2.230130 TGCCCCTTCCGATTTTCATT 57.770 45.000 0.00 0.00 0.00 2.57
2555 4993 3.374042 TGCCCCTTCCGATTTTCATTA 57.626 42.857 0.00 0.00 0.00 1.90
2556 4994 3.020984 TGCCCCTTCCGATTTTCATTAC 58.979 45.455 0.00 0.00 0.00 1.89
2557 4995 3.288092 GCCCCTTCCGATTTTCATTACT 58.712 45.455 0.00 0.00 0.00 2.24
2558 4996 3.066760 GCCCCTTCCGATTTTCATTACTG 59.933 47.826 0.00 0.00 0.00 2.74
2559 4997 4.523083 CCCCTTCCGATTTTCATTACTGA 58.477 43.478 0.00 0.00 0.00 3.41
2560 4998 4.947388 CCCCTTCCGATTTTCATTACTGAA 59.053 41.667 0.00 0.00 39.62 3.02
2561 4999 5.417580 CCCCTTCCGATTTTCATTACTGAAA 59.582 40.000 4.26 4.26 46.92 2.69
2572 5010 6.783708 TTCATTACTGAAAACCACCAAAGT 57.216 33.333 0.00 0.00 38.43 2.66
2573 5011 6.783708 TCATTACTGAAAACCACCAAAGTT 57.216 33.333 0.00 0.00 0.00 2.66
2574 5012 6.801575 TCATTACTGAAAACCACCAAAGTTC 58.198 36.000 0.00 0.00 0.00 3.01
2575 5013 6.378564 TCATTACTGAAAACCACCAAAGTTCA 59.621 34.615 0.00 0.00 0.00 3.18
2576 5014 4.450082 ACTGAAAACCACCAAAGTTCAC 57.550 40.909 0.00 0.00 0.00 3.18
2577 5015 3.829601 ACTGAAAACCACCAAAGTTCACA 59.170 39.130 0.00 0.00 0.00 3.58
2578 5016 4.282195 ACTGAAAACCACCAAAGTTCACAA 59.718 37.500 0.00 0.00 0.00 3.33
2579 5017 4.561105 TGAAAACCACCAAAGTTCACAAC 58.439 39.130 0.00 0.00 0.00 3.32
2580 5018 3.603158 AAACCACCAAAGTTCACAACC 57.397 42.857 0.00 0.00 0.00 3.77
2581 5019 2.223803 ACCACCAAAGTTCACAACCA 57.776 45.000 0.00 0.00 0.00 3.67
2582 5020 2.099405 ACCACCAAAGTTCACAACCAG 58.901 47.619 0.00 0.00 0.00 4.00
2583 5021 2.291282 ACCACCAAAGTTCACAACCAGA 60.291 45.455 0.00 0.00 0.00 3.86
2584 5022 2.958355 CCACCAAAGTTCACAACCAGAT 59.042 45.455 0.00 0.00 0.00 2.90
2585 5023 3.384467 CCACCAAAGTTCACAACCAGATT 59.616 43.478 0.00 0.00 0.00 2.40
2586 5024 4.499696 CCACCAAAGTTCACAACCAGATTC 60.500 45.833 0.00 0.00 0.00 2.52
2587 5025 4.097741 CACCAAAGTTCACAACCAGATTCA 59.902 41.667 0.00 0.00 0.00 2.57
2588 5026 4.339247 ACCAAAGTTCACAACCAGATTCAG 59.661 41.667 0.00 0.00 0.00 3.02
2589 5027 4.339247 CCAAAGTTCACAACCAGATTCAGT 59.661 41.667 0.00 0.00 0.00 3.41
2590 5028 5.506317 CCAAAGTTCACAACCAGATTCAGTC 60.506 44.000 0.00 0.00 0.00 3.51
2591 5029 4.696479 AGTTCACAACCAGATTCAGTCT 57.304 40.909 0.00 0.00 37.80 3.24
2592 5030 5.808366 AGTTCACAACCAGATTCAGTCTA 57.192 39.130 0.00 0.00 34.69 2.59
2593 5031 6.174720 AGTTCACAACCAGATTCAGTCTAA 57.825 37.500 0.00 0.00 34.69 2.10
2594 5032 6.591935 AGTTCACAACCAGATTCAGTCTAAA 58.408 36.000 0.00 0.00 34.69 1.85
2595 5033 7.054124 AGTTCACAACCAGATTCAGTCTAAAA 58.946 34.615 0.00 0.00 34.69 1.52
2596 5034 7.227512 AGTTCACAACCAGATTCAGTCTAAAAG 59.772 37.037 0.00 0.00 34.69 2.27
2597 5035 6.826668 TCACAACCAGATTCAGTCTAAAAGA 58.173 36.000 0.00 0.00 34.69 2.52
2598 5036 7.279615 TCACAACCAGATTCAGTCTAAAAGAA 58.720 34.615 0.00 0.00 34.69 2.52
2599 5037 7.773224 TCACAACCAGATTCAGTCTAAAAGAAA 59.227 33.333 0.00 0.00 34.69 2.52
2600 5038 8.072567 CACAACCAGATTCAGTCTAAAAGAAAG 58.927 37.037 0.00 0.00 34.69 2.62
2601 5039 7.229506 ACAACCAGATTCAGTCTAAAAGAAAGG 59.770 37.037 0.00 0.00 34.69 3.11
2602 5040 7.079451 ACCAGATTCAGTCTAAAAGAAAGGA 57.921 36.000 0.00 0.00 34.69 3.36
2603 5041 6.937465 ACCAGATTCAGTCTAAAAGAAAGGAC 59.063 38.462 0.00 0.00 34.69 3.85
2604 5042 7.164803 CCAGATTCAGTCTAAAAGAAAGGACT 58.835 38.462 0.00 0.00 39.28 3.85
2605 5043 8.314751 CCAGATTCAGTCTAAAAGAAAGGACTA 58.685 37.037 0.00 0.00 36.99 2.59
2606 5044 9.712305 CAGATTCAGTCTAAAAGAAAGGACTAA 57.288 33.333 0.00 0.00 36.99 2.24
2610 5048 8.361592 TCAGTCTAAAAGAAAGGACTAAAACG 57.638 34.615 0.00 0.00 36.99 3.60
2611 5049 7.042254 TCAGTCTAAAAGAAAGGACTAAAACGC 60.042 37.037 0.00 0.00 36.99 4.84
2612 5050 6.990939 AGTCTAAAAGAAAGGACTAAAACGCT 59.009 34.615 0.00 0.00 37.29 5.07
2613 5051 8.146412 AGTCTAAAAGAAAGGACTAAAACGCTA 58.854 33.333 0.00 0.00 37.29 4.26
2614 5052 8.219769 GTCTAAAAGAAAGGACTAAAACGCTAC 58.780 37.037 0.00 0.00 0.00 3.58
2615 5053 5.936686 AAAGAAAGGACTAAAACGCTACC 57.063 39.130 0.00 0.00 0.00 3.18
2616 5054 4.612264 AGAAAGGACTAAAACGCTACCA 57.388 40.909 0.00 0.00 0.00 3.25
2617 5055 4.566987 AGAAAGGACTAAAACGCTACCAG 58.433 43.478 0.00 0.00 0.00 4.00
2618 5056 4.040095 AGAAAGGACTAAAACGCTACCAGT 59.960 41.667 0.00 0.00 0.00 4.00
2619 5057 4.347360 AAGGACTAAAACGCTACCAGTT 57.653 40.909 0.00 0.00 0.00 3.16
2620 5058 3.660865 AGGACTAAAACGCTACCAGTTG 58.339 45.455 0.00 0.00 31.43 3.16
2711 5162 0.821517 ATGCCGTCACTCCGATAACA 59.178 50.000 0.00 0.00 0.00 2.41
2816 5267 2.178235 GCTGATCTGCATGAGCGCA 61.178 57.895 18.67 0.00 46.23 6.09
2838 5289 3.067601 ACTCGGCGTGTACAATATCATCA 59.932 43.478 13.47 0.00 0.00 3.07
2840 5291 4.434520 TCGGCGTGTACAATATCATCAAA 58.565 39.130 6.85 0.00 0.00 2.69
2849 5300 6.549364 TGTACAATATCATCAAATGGAACCCC 59.451 38.462 0.00 0.00 0.00 4.95
3121 5578 4.142609 ACAGTGCAATCCAGGTACTATG 57.857 45.455 0.00 0.00 36.02 2.23
3156 5613 6.360370 TCAGCAACTAGTTCAGTTCCTATT 57.640 37.500 4.77 0.00 44.48 1.73
3187 5645 3.564235 TCAACTCATCATGCTGTTTGC 57.436 42.857 0.00 0.00 43.25 3.68
3357 5815 3.008049 CAGTTCCAGGTACCTACTGCTTT 59.992 47.826 23.90 3.26 34.65 3.51
3358 5816 4.222145 CAGTTCCAGGTACCTACTGCTTTA 59.778 45.833 23.90 0.77 34.65 1.85
3359 5817 4.222366 AGTTCCAGGTACCTACTGCTTTAC 59.778 45.833 15.80 4.74 34.65 2.01
3399 5860 7.071414 GCAAAAACTTTGCCTCATCAATTAAC 58.929 34.615 12.10 0.00 39.38 2.01
3401 5862 8.490355 CAAAAACTTTGCCTCATCAATTAACTC 58.510 33.333 0.00 0.00 0.00 3.01
3406 5867 8.203485 ACTTTGCCTCATCAATTAACTCAAAAA 58.797 29.630 0.00 0.00 0.00 1.94
3472 5933 4.261801 GACCTGCTGCTTACTTGGATTAA 58.738 43.478 0.00 0.00 0.00 1.40
3479 5940 8.383318 TGCTGCTTACTTGGATTAATAGATTC 57.617 34.615 0.00 0.00 0.00 2.52
3546 6007 4.765273 TGTGAAAGACTTGCACTGTTCTA 58.235 39.130 23.90 3.12 33.83 2.10
3584 6045 6.801539 TTCAGTAAACAGGCACTAATTGAG 57.198 37.500 0.00 0.00 36.02 3.02
3589 6050 1.073763 ACAGGCACTAATTGAGCACCA 59.926 47.619 0.00 0.00 36.02 4.17
3617 6078 2.408271 TTTATGCAGAGGCTGTGAGG 57.592 50.000 16.83 0.00 41.91 3.86
3656 6117 2.125147 ATCATGGCGTCGGTGGTG 60.125 61.111 0.00 0.00 0.00 4.17
3881 6342 2.509336 CTGGCGGTGATCACGGTC 60.509 66.667 26.06 26.06 36.88 4.79
3896 6357 1.675641 GGTCATGCTGGTCACCACC 60.676 63.158 0.00 0.00 44.10 4.61
4538 6999 0.599204 AGAACGCGTTCACCGTCATT 60.599 50.000 42.89 23.86 41.84 2.57
4616 7077 1.138036 CGTGGAGATACGCGTGGAA 59.862 57.895 24.59 1.10 39.35 3.53
4623 7084 4.745751 TACGCGTGGAAAGCCCGG 62.746 66.667 24.59 0.00 38.42 5.73
4649 7110 2.114411 AACGGGGCGAACACCATT 59.886 55.556 0.00 0.00 0.00 3.16
4652 7113 1.969064 CGGGGCGAACACCATTGAA 60.969 57.895 0.00 0.00 0.00 2.69
4659 7120 0.865769 GAACACCATTGAACTCGCGT 59.134 50.000 5.77 0.00 0.00 6.01
4665 7132 2.380410 ATTGAACTCGCGTCCGTGC 61.380 57.895 5.77 1.21 35.54 5.34
5003 7470 3.767711 TCTGTTCTGTCTCTAGCTTCCA 58.232 45.455 0.00 0.00 0.00 3.53
5057 7524 2.546368 TGGTGCGCGATGGAAATATTAC 59.454 45.455 12.10 0.00 0.00 1.89
5072 7545 8.246871 TGGAAATATTACGTTTGATGAAATGCA 58.753 29.630 0.00 0.00 32.07 3.96
5101 7574 2.202837 GCGGTCACGGGGTGATAC 60.203 66.667 1.36 0.00 44.63 2.24
5175 7764 1.117994 CTCTCCCACATGAGCTAGCA 58.882 55.000 18.83 0.00 32.22 3.49
5185 7776 0.686789 TGAGCTAGCAGGCAACAAGA 59.313 50.000 18.83 0.00 41.41 3.02
5192 7783 1.160137 GCAGGCAACAAGACTAGTGG 58.840 55.000 0.00 0.00 41.41 4.00
5197 7788 1.148310 CAACAAGACTAGTGGTGCGG 58.852 55.000 0.00 0.00 0.00 5.69
5198 7789 0.602905 AACAAGACTAGTGGTGCGGC 60.603 55.000 0.00 0.00 0.00 6.53
5199 7790 1.293498 CAAGACTAGTGGTGCGGCT 59.707 57.895 0.00 0.00 0.00 5.52
5200 7791 0.320771 CAAGACTAGTGGTGCGGCTT 60.321 55.000 0.00 0.00 0.00 4.35
5202 7793 1.741770 GACTAGTGGTGCGGCTTGG 60.742 63.158 0.00 0.00 0.00 3.61
5226 7817 1.584380 CTGCTGCAACAGGAGCCTTC 61.584 60.000 9.33 0.00 45.01 3.46
5240 7831 3.560105 GAGCCTTCTTGCAATATCCCTT 58.440 45.455 0.00 0.00 0.00 3.95
5248 7839 6.959639 TCTTGCAATATCCCTTAACCATTC 57.040 37.500 0.00 0.00 0.00 2.67
5292 7892 2.632643 TGCAGTCGCAGCAAAATCT 58.367 47.368 0.00 0.00 45.36 2.40
5302 7902 6.094603 AGTCGCAGCAAAATCTCATTATTCTT 59.905 34.615 0.00 0.00 0.00 2.52
5303 7903 6.749118 GTCGCAGCAAAATCTCATTATTCTTT 59.251 34.615 0.00 0.00 0.00 2.52
5307 7907 7.549839 CAGCAAAATCTCATTATTCTTTCCCA 58.450 34.615 0.00 0.00 0.00 4.37
5323 7923 1.922447 TCCCATCCATACAAAGGTGCT 59.078 47.619 0.00 0.00 0.00 4.40
5348 7948 2.111878 CGGCATCACCCTCCCATC 59.888 66.667 0.00 0.00 33.26 3.51
5352 7952 1.453235 CATCACCCTCCCATCGCAT 59.547 57.895 0.00 0.00 0.00 4.73
5357 7957 0.693049 ACCCTCCCATCGCATAATCC 59.307 55.000 0.00 0.00 0.00 3.01
5359 7959 0.321671 CCTCCCATCGCATAATCCGT 59.678 55.000 0.00 0.00 0.00 4.69
5488 8089 9.507329 AACTAACTCACATGTAATTTGACAGAT 57.493 29.630 0.00 0.00 28.62 2.90
5503 8104 6.441093 TTGACAGATTGGTGCTAAATCATC 57.559 37.500 8.59 6.63 36.65 2.92
5529 8130 7.510630 GTTTGCCGCTACTCACTATTATAATG 58.489 38.462 8.28 1.42 0.00 1.90
5530 8131 5.168569 TGCCGCTACTCACTATTATAATGC 58.831 41.667 8.28 0.00 0.00 3.56
5587 8188 5.997746 CCAATTGTCTCACTTTACCTCTCAA 59.002 40.000 4.43 0.00 0.00 3.02
5607 8208 1.066143 AGGTCAGTATTGTGAAGCCCG 60.066 52.381 0.00 0.00 0.00 6.13
5616 8217 0.250945 TGTGAAGCCCGCATGGTTTA 60.251 50.000 0.00 0.00 37.73 2.01
5698 8299 7.012704 GCATCTTAGACTATTTGATGAGCCAAA 59.987 37.037 17.49 0.00 39.93 3.28
5701 8302 8.730680 TCTTAGACTATTTGATGAGCCAAAAAC 58.269 33.333 0.00 0.00 39.20 2.43
5755 8356 9.193806 AGCATCTTAAACCATTTGATGAACTAT 57.806 29.630 0.00 0.00 37.33 2.12
5787 8415 0.244994 AGAGCGAGGTGTGATGTGAC 59.755 55.000 0.00 0.00 0.00 3.67
5805 8435 3.005897 GTGACGATGGAGTAGGCACATAT 59.994 47.826 0.00 0.00 40.79 1.78
5840 8470 7.147976 GTCCAAACAAAGAGCTTGATATTGTT 58.852 34.615 9.18 9.18 43.78 2.83
5844 8474 6.259550 ACAAAGAGCTTGATATTGTTGTCC 57.740 37.500 0.00 0.00 38.50 4.02
5849 8479 3.935203 AGCTTGATATTGTTGTCCTGTCG 59.065 43.478 0.00 0.00 0.00 4.35
5908 8538 4.337555 AGCATGATCCAAGATAAACAGCAC 59.662 41.667 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.530388 CGATGGAATGATGATGGAAAACG 58.470 43.478 0.00 0.00 0.00 3.60
36 37 2.158638 TGGCGATGGAATGATGATGGAA 60.159 45.455 0.00 0.00 0.00 3.53
51 60 2.674033 TTGCAGCAAGCTGGCGAT 60.674 55.556 22.20 0.00 45.94 4.58
68 77 1.887198 CCTGACGTACTGACCTTCTGT 59.113 52.381 0.00 0.00 33.13 3.41
88 97 7.586714 AGCATTTTCGAGAAATGGAAATTTC 57.413 32.000 22.76 9.83 40.00 2.17
89 98 9.305925 GATAGCATTTTCGAGAAATGGAAATTT 57.694 29.630 22.76 0.00 37.92 1.82
90 99 8.689972 AGATAGCATTTTCGAGAAATGGAAATT 58.310 29.630 22.76 2.42 37.92 1.82
91 100 8.133627 CAGATAGCATTTTCGAGAAATGGAAAT 58.866 33.333 22.76 8.47 37.92 2.17
92 101 7.121168 ACAGATAGCATTTTCGAGAAATGGAAA 59.879 33.333 22.76 6.84 37.92 3.13
93 102 6.599244 ACAGATAGCATTTTCGAGAAATGGAA 59.401 34.615 22.76 0.00 37.92 3.53
95 104 6.369059 ACAGATAGCATTTTCGAGAAATGG 57.631 37.500 22.76 13.65 37.92 3.16
97 106 7.253422 CCAAACAGATAGCATTTTCGAGAAAT 58.747 34.615 0.00 0.00 0.00 2.17
98 107 6.349280 CCCAAACAGATAGCATTTTCGAGAAA 60.349 38.462 0.00 0.00 0.00 2.52
99 108 5.123820 CCCAAACAGATAGCATTTTCGAGAA 59.876 40.000 0.00 0.00 0.00 2.87
100 109 4.635765 CCCAAACAGATAGCATTTTCGAGA 59.364 41.667 0.00 0.00 0.00 4.04
101 110 4.731773 GCCCAAACAGATAGCATTTTCGAG 60.732 45.833 0.00 0.00 0.00 4.04
102 111 3.128589 GCCCAAACAGATAGCATTTTCGA 59.871 43.478 0.00 0.00 0.00 3.71
103 112 3.119531 TGCCCAAACAGATAGCATTTTCG 60.120 43.478 0.00 0.00 0.00 3.46
105 114 4.440525 CGATGCCCAAACAGATAGCATTTT 60.441 41.667 0.00 0.00 43.86 1.82
106 115 3.067180 CGATGCCCAAACAGATAGCATTT 59.933 43.478 0.00 0.00 43.86 2.32
107 116 2.620115 CGATGCCCAAACAGATAGCATT 59.380 45.455 0.00 0.00 43.86 3.56
108 117 2.224606 CGATGCCCAAACAGATAGCAT 58.775 47.619 0.00 0.00 46.35 3.79
109 118 1.065491 ACGATGCCCAAACAGATAGCA 60.065 47.619 0.00 0.00 37.94 3.49
110 119 1.331756 CACGATGCCCAAACAGATAGC 59.668 52.381 0.00 0.00 0.00 2.97
111 120 1.331756 GCACGATGCCCAAACAGATAG 59.668 52.381 0.00 0.00 37.42 2.08
112 121 1.065491 AGCACGATGCCCAAACAGATA 60.065 47.619 6.39 0.00 46.52 1.98
115 124 0.447801 GTAGCACGATGCCCAAACAG 59.552 55.000 6.39 0.00 46.52 3.16
117 126 1.165270 AAGTAGCACGATGCCCAAAC 58.835 50.000 6.39 1.93 46.52 2.93
123 132 1.666189 GGGAAGAAAGTAGCACGATGC 59.334 52.381 0.00 0.00 45.46 3.91
124 133 3.252974 AGGGAAGAAAGTAGCACGATG 57.747 47.619 0.00 0.00 0.00 3.84
133 142 5.677567 TCTTTCGTTGTAAGGGAAGAAAGT 58.322 37.500 13.23 0.00 42.75 2.66
135 144 7.389607 CCTTATCTTTCGTTGTAAGGGAAGAAA 59.610 37.037 10.94 7.16 40.59 2.52
136 145 6.877322 CCTTATCTTTCGTTGTAAGGGAAGAA 59.123 38.462 10.94 0.00 40.59 2.52
137 146 6.211986 TCCTTATCTTTCGTTGTAAGGGAAGA 59.788 38.462 9.68 9.68 42.12 2.87
146 155 4.159879 ACGGAGATCCTTATCTTTCGTTGT 59.840 41.667 10.03 0.00 43.45 3.32
168 177 0.168128 CGTGCAGGGGAATCGAAAAC 59.832 55.000 0.00 0.00 0.00 2.43
219 232 0.178958 GGAGGAAGAGGGAGGCGATA 60.179 60.000 0.00 0.00 0.00 2.92
220 233 1.458588 GGAGGAAGAGGGAGGCGAT 60.459 63.158 0.00 0.00 0.00 4.58
222 235 3.157949 GGGAGGAAGAGGGAGGCG 61.158 72.222 0.00 0.00 0.00 5.52
223 236 2.069430 CAGGGAGGAAGAGGGAGGC 61.069 68.421 0.00 0.00 0.00 4.70
226 239 0.253347 AATGCAGGGAGGAAGAGGGA 60.253 55.000 0.00 0.00 0.00 4.20
228 241 2.507471 AGTTAATGCAGGGAGGAAGAGG 59.493 50.000 0.00 0.00 0.00 3.69
230 243 2.239654 CCAGTTAATGCAGGGAGGAAGA 59.760 50.000 0.00 0.00 0.00 2.87
231 244 2.239654 TCCAGTTAATGCAGGGAGGAAG 59.760 50.000 0.00 0.00 0.00 3.46
232 245 2.274542 TCCAGTTAATGCAGGGAGGAA 58.725 47.619 0.00 0.00 0.00 3.36
233 246 1.965414 TCCAGTTAATGCAGGGAGGA 58.035 50.000 0.00 0.00 0.00 3.71
234 247 2.239654 TCTTCCAGTTAATGCAGGGAGG 59.760 50.000 0.00 0.00 0.00 4.30
235 248 3.634397 TCTTCCAGTTAATGCAGGGAG 57.366 47.619 0.00 0.00 0.00 4.30
236 249 3.587061 TCTTCTTCCAGTTAATGCAGGGA 59.413 43.478 0.00 0.00 0.00 4.20
248 261 4.948621 AGAATCTTGGCATTCTTCTTCCAG 59.051 41.667 0.00 0.00 39.67 3.86
278 291 3.155167 GCTAGGGGAGGTGGACGG 61.155 72.222 0.00 0.00 0.00 4.79
340 353 4.544683 AGTTCCATACTACCACCTCCTAC 58.455 47.826 0.00 0.00 34.56 3.18
341 354 4.894252 AGTTCCATACTACCACCTCCTA 57.106 45.455 0.00 0.00 34.56 2.94
438 460 3.549794 CTGGGAGAAGATTGATTGGTCC 58.450 50.000 0.00 0.00 0.00 4.46
458 481 7.831193 ACACATATATCTTTTGAGAGTTTGGCT 59.169 33.333 0.00 0.00 0.00 4.75
483 506 3.060895 CGAAAAAGATCGGTGTCTGCTAC 59.939 47.826 0.00 0.00 39.12 3.58
484 507 3.250744 CGAAAAAGATCGGTGTCTGCTA 58.749 45.455 0.00 0.00 39.12 3.49
485 508 2.069273 CGAAAAAGATCGGTGTCTGCT 58.931 47.619 0.00 0.00 39.12 4.24
518 549 0.305922 CAAAGCGATGGAGGCGATTC 59.694 55.000 0.00 0.00 36.24 2.52
555 1938 1.680651 AGCTAGTGCGCACTCCTCT 60.681 57.895 43.74 32.45 45.42 3.69
556 1939 1.518133 CAGCTAGTGCGCACTCCTC 60.518 63.158 43.74 30.96 45.42 3.71
557 1940 2.279069 ACAGCTAGTGCGCACTCCT 61.279 57.895 43.74 34.71 45.42 3.69
558 1941 2.097038 CACAGCTAGTGCGCACTCC 61.097 63.158 43.74 33.23 45.42 3.85
559 1942 3.468007 CACAGCTAGTGCGCACTC 58.532 61.111 43.74 30.55 45.42 3.51
572 1955 1.002087 GTCCACCTACAACCTCCACAG 59.998 57.143 0.00 0.00 0.00 3.66
658 2050 7.977818 TGAAGAAAGGCATACTCCATACATAT 58.022 34.615 0.00 0.00 0.00 1.78
659 2051 7.373617 TGAAGAAAGGCATACTCCATACATA 57.626 36.000 0.00 0.00 0.00 2.29
660 2052 6.252599 TGAAGAAAGGCATACTCCATACAT 57.747 37.500 0.00 0.00 0.00 2.29
661 2053 5.692115 TGAAGAAAGGCATACTCCATACA 57.308 39.130 0.00 0.00 0.00 2.29
662 2054 6.205658 GGAATGAAGAAAGGCATACTCCATAC 59.794 42.308 0.00 0.00 0.00 2.39
663 2055 6.299141 GGAATGAAGAAAGGCATACTCCATA 58.701 40.000 0.00 0.00 0.00 2.74
664 2056 5.136105 GGAATGAAGAAAGGCATACTCCAT 58.864 41.667 0.00 0.00 0.00 3.41
665 2057 4.526970 GGAATGAAGAAAGGCATACTCCA 58.473 43.478 0.00 0.00 0.00 3.86
666 2058 3.885901 GGGAATGAAGAAAGGCATACTCC 59.114 47.826 0.00 0.00 0.00 3.85
667 2059 3.885901 GGGGAATGAAGAAAGGCATACTC 59.114 47.826 0.00 0.00 0.00 2.59
668 2060 3.529319 AGGGGAATGAAGAAAGGCATACT 59.471 43.478 0.00 0.00 0.00 2.12
669 2061 3.885901 GAGGGGAATGAAGAAAGGCATAC 59.114 47.826 0.00 0.00 0.00 2.39
724 2440 5.841237 TGAGTATATGAAGGGGGAAGAAGAG 59.159 44.000 0.00 0.00 0.00 2.85
725 2441 5.602978 GTGAGTATATGAAGGGGGAAGAAGA 59.397 44.000 0.00 0.00 0.00 2.87
726 2442 5.221742 GGTGAGTATATGAAGGGGGAAGAAG 60.222 48.000 0.00 0.00 0.00 2.85
855 2856 7.544566 TGTTACCAGTCGAATAGATTGAAGAAC 59.455 37.037 0.00 0.00 38.69 3.01
857 2858 7.033791 GTGTTACCAGTCGAATAGATTGAAGA 58.966 38.462 0.00 0.00 38.69 2.87
858 2859 7.009631 CAGTGTTACCAGTCGAATAGATTGAAG 59.990 40.741 0.00 0.00 38.69 3.02
876 2877 7.589954 CACATAAGGTAAAAGCAACAGTGTTAC 59.410 37.037 8.49 2.65 0.00 2.50
882 2883 5.182001 AGAGCACATAAGGTAAAAGCAACAG 59.818 40.000 0.00 0.00 0.00 3.16
883 2884 5.048782 CAGAGCACATAAGGTAAAAGCAACA 60.049 40.000 0.00 0.00 0.00 3.33
922 2927 3.134458 CACGCTCCTATGATTTCCTTCC 58.866 50.000 0.00 0.00 0.00 3.46
1032 3047 6.924111 TCCTACCTTGCTTGATTTTGAATTC 58.076 36.000 0.00 0.00 0.00 2.17
1043 3060 3.309296 TCCTCCTATCCTACCTTGCTTG 58.691 50.000 0.00 0.00 0.00 4.01
1057 3074 5.766670 CAGCATTGATAATTGCTTCCTCCTA 59.233 40.000 0.00 0.00 35.17 2.94
1058 3075 4.583489 CAGCATTGATAATTGCTTCCTCCT 59.417 41.667 0.00 0.00 35.17 3.69
1060 3077 5.762825 TCAGCATTGATAATTGCTTCCTC 57.237 39.130 0.00 0.00 35.17 3.71
1061 3078 5.451520 GCTTCAGCATTGATAATTGCTTCCT 60.452 40.000 0.00 0.00 41.59 3.36
1064 3081 5.348986 CAGCTTCAGCATTGATAATTGCTT 58.651 37.500 0.75 0.00 45.16 3.91
1084 3101 0.521735 GACACCCGATTGAAACCAGC 59.478 55.000 0.00 0.00 0.00 4.85
1093 3110 0.544357 TCCCTCTGTGACACCCGATT 60.544 55.000 2.45 0.00 0.00 3.34
1095 3112 1.606601 CTCCCTCTGTGACACCCGA 60.607 63.158 2.45 0.00 0.00 5.14
1104 3127 2.362369 CCGCCATGTCTCCCTCTGT 61.362 63.158 0.00 0.00 0.00 3.41
1108 3131 3.461773 CGTCCGCCATGTCTCCCT 61.462 66.667 0.00 0.00 0.00 4.20
1596 3976 5.046520 GGACTGAACAAGGGTGAAGTAGTAT 60.047 44.000 0.00 0.00 0.00 2.12
1607 3987 2.240667 AGATGGATGGACTGAACAAGGG 59.759 50.000 0.00 0.00 0.00 3.95
1612 3992 5.495640 AGAAAGAAGATGGATGGACTGAAC 58.504 41.667 0.00 0.00 0.00 3.18
1616 3996 6.385766 AAGAAGAAAGAAGATGGATGGACT 57.614 37.500 0.00 0.00 0.00 3.85
1646 4026 8.935844 CAACTGAAGAAATAAATAAAAAGCCCC 58.064 33.333 0.00 0.00 0.00 5.80
1647 4027 8.935844 CCAACTGAAGAAATAAATAAAAAGCCC 58.064 33.333 0.00 0.00 0.00 5.19
1648 4028 8.443160 GCCAACTGAAGAAATAAATAAAAAGCC 58.557 33.333 0.00 0.00 0.00 4.35
1649 4029 9.208022 AGCCAACTGAAGAAATAAATAAAAAGC 57.792 29.630 0.00 0.00 0.00 3.51
1656 4036 7.449704 ACTGAAGAGCCAACTGAAGAAATAAAT 59.550 33.333 0.00 0.00 0.00 1.40
1657 4037 6.772716 ACTGAAGAGCCAACTGAAGAAATAAA 59.227 34.615 0.00 0.00 0.00 1.40
1681 4061 2.262423 AACTGCTCCCTGAACTGAAC 57.738 50.000 0.00 0.00 0.00 3.18
1682 4062 2.972713 AGTAACTGCTCCCTGAACTGAA 59.027 45.455 0.00 0.00 0.00 3.02
1683 4063 2.609747 AGTAACTGCTCCCTGAACTGA 58.390 47.619 0.00 0.00 0.00 3.41
1684 4064 3.409026 AAGTAACTGCTCCCTGAACTG 57.591 47.619 0.00 0.00 0.00 3.16
1685 4065 5.491982 CAATAAGTAACTGCTCCCTGAACT 58.508 41.667 0.00 0.00 0.00 3.01
1843 4231 5.291178 TCATTGGTTGCAGACAAAATCTTG 58.709 37.500 8.87 3.77 37.58 3.02
1869 4266 5.026121 TGATGGATTGTTCAGTACTCTCCT 58.974 41.667 0.00 0.00 32.48 3.69
1870 4267 5.344743 TGATGGATTGTTCAGTACTCTCC 57.655 43.478 0.00 0.00 0.00 3.71
1925 4322 8.812147 TCATCATCATAAAGTACCGTATCAAC 57.188 34.615 0.00 0.00 0.00 3.18
1943 4340 9.622004 CAGTTTTGCTAATCCATAATCATCATC 57.378 33.333 0.00 0.00 0.00 2.92
1960 4357 4.753516 AAAGGCTTTTACCAGTTTTGCT 57.246 36.364 6.68 0.00 0.00 3.91
1983 4380 5.873179 TTACCAGTTTTGCTAATTCCGAG 57.127 39.130 0.00 0.00 0.00 4.63
1984 4381 5.392595 GCATTACCAGTTTTGCTAATTCCGA 60.393 40.000 0.00 0.00 32.41 4.55
2006 4403 0.392336 AATTTTGAGCCGCCAAAGCA 59.608 45.000 6.98 0.00 39.83 3.91
2008 4405 3.575965 ACTAATTTTGAGCCGCCAAAG 57.424 42.857 6.98 0.69 37.34 2.77
2022 4419 9.630098 CACAGTTTTGCATCATTCTAACTAATT 57.370 29.630 0.00 0.00 0.00 1.40
2024 4421 8.389779 TCACAGTTTTGCATCATTCTAACTAA 57.610 30.769 0.00 0.00 0.00 2.24
2031 4428 4.771590 TCCTCACAGTTTTGCATCATTC 57.228 40.909 0.00 0.00 0.00 2.67
2064 4461 5.123979 GGCCAGGTAAGTGAAGTAGAAATTG 59.876 44.000 0.00 0.00 0.00 2.32
2095 4496 1.131638 AGACAGCTGACAACTGGGAA 58.868 50.000 23.35 0.00 39.55 3.97
2129 4532 9.942850 TGATAGAAATTCAGACATACAAGTCAA 57.057 29.630 0.00 0.00 40.98 3.18
2171 4591 9.528018 CACATTTAACAGTTTGGTCATACTTTT 57.472 29.630 0.00 0.00 0.00 2.27
2214 4634 8.868522 TGTCTGGAATATTTCTGAAACTGAAT 57.131 30.769 4.73 0.00 0.00 2.57
2233 4653 1.200020 GTGAAATCCGGCTTTGTCTGG 59.800 52.381 8.24 0.00 0.00 3.86
2237 4657 2.270352 TCAGTGAAATCCGGCTTTGT 57.730 45.000 8.24 0.00 0.00 2.83
2240 4660 3.826157 TGAAATTCAGTGAAATCCGGCTT 59.174 39.130 10.14 0.00 0.00 4.35
2271 4691 9.902684 TTAATTAATTATGGTACTTTGGACGGA 57.097 29.630 8.70 0.00 0.00 4.69
2298 4734 9.830975 TCTCAATCGAATTCAGGTGATAATTAA 57.169 29.630 6.22 0.00 0.00 1.40
2309 4745 9.778993 ATTTTGTTGTATCTCAATCGAATTCAG 57.221 29.630 6.22 0.00 38.38 3.02
2353 4791 9.072375 TGGTAGTTCACACAAATTCAAATGATA 57.928 29.630 0.00 0.00 0.00 2.15
2449 4887 9.393512 TCACTTTCAACCAAATTTCATCAATTT 57.606 25.926 0.00 0.00 44.60 1.82
2454 4892 8.882736 ACTTTTCACTTTCAACCAAATTTCATC 58.117 29.630 0.00 0.00 0.00 2.92
2455 4893 8.791327 ACTTTTCACTTTCAACCAAATTTCAT 57.209 26.923 0.00 0.00 0.00 2.57
2464 4902 7.549615 ACAGTAGTACTTTTCACTTTCAACC 57.450 36.000 0.00 0.00 0.00 3.77
2483 4921 8.554528 GCGACAGACAACTAGTATAATACAGTA 58.445 37.037 0.00 0.00 0.00 2.74
2484 4922 7.416022 GCGACAGACAACTAGTATAATACAGT 58.584 38.462 0.00 0.00 0.00 3.55
2485 4923 6.856938 GGCGACAGACAACTAGTATAATACAG 59.143 42.308 0.00 0.00 0.00 2.74
2486 4924 6.544931 AGGCGACAGACAACTAGTATAATACA 59.455 38.462 0.00 0.00 0.00 2.29
2487 4925 6.968250 AGGCGACAGACAACTAGTATAATAC 58.032 40.000 0.00 0.00 0.00 1.89
2517 4955 4.535526 GGCAAGCCCTTCTTTGATAAAA 57.464 40.909 0.00 0.00 31.27 1.52
2531 4969 1.257750 AAAATCGGAAGGGGCAAGCC 61.258 55.000 1.52 1.52 0.00 4.35
2532 4970 0.173481 GAAAATCGGAAGGGGCAAGC 59.827 55.000 0.00 0.00 0.00 4.01
2533 4971 1.544724 TGAAAATCGGAAGGGGCAAG 58.455 50.000 0.00 0.00 0.00 4.01
2534 4972 2.230130 ATGAAAATCGGAAGGGGCAA 57.770 45.000 0.00 0.00 0.00 4.52
2535 4973 2.230130 AATGAAAATCGGAAGGGGCA 57.770 45.000 0.00 0.00 0.00 5.36
2536 4974 3.066760 CAGTAATGAAAATCGGAAGGGGC 59.933 47.826 0.00 0.00 0.00 5.80
2537 4975 4.523083 TCAGTAATGAAAATCGGAAGGGG 58.477 43.478 0.00 0.00 0.00 4.79
2538 4976 6.509418 TTTCAGTAATGAAAATCGGAAGGG 57.491 37.500 15.48 0.00 35.17 3.95
2539 4977 6.806739 GGTTTTCAGTAATGAAAATCGGAAGG 59.193 38.462 27.81 0.00 45.67 3.46
2540 4978 7.326063 GTGGTTTTCAGTAATGAAAATCGGAAG 59.674 37.037 27.81 0.00 46.34 3.46
2541 4979 7.142680 GTGGTTTTCAGTAATGAAAATCGGAA 58.857 34.615 27.81 13.33 46.34 4.30
2542 4980 6.294286 GGTGGTTTTCAGTAATGAAAATCGGA 60.294 38.462 27.81 13.94 46.34 4.55
2543 4981 5.861787 GGTGGTTTTCAGTAATGAAAATCGG 59.138 40.000 27.81 0.00 46.34 4.18
2544 4982 6.442952 TGGTGGTTTTCAGTAATGAAAATCG 58.557 36.000 27.81 0.00 46.34 3.34
2545 4983 8.655651 TTTGGTGGTTTTCAGTAATGAAAATC 57.344 30.769 27.81 27.28 45.67 2.17
2546 4984 8.264347 ACTTTGGTGGTTTTCAGTAATGAAAAT 58.736 29.630 27.81 10.81 45.67 1.82
2547 4985 7.616313 ACTTTGGTGGTTTTCAGTAATGAAAA 58.384 30.769 23.18 23.18 43.10 2.29
2548 4986 7.176589 ACTTTGGTGGTTTTCAGTAATGAAA 57.823 32.000 13.98 13.98 36.17 2.69
2549 4987 6.783708 ACTTTGGTGGTTTTCAGTAATGAA 57.216 33.333 0.56 0.56 0.00 2.57
2550 4988 6.378564 TGAACTTTGGTGGTTTTCAGTAATGA 59.621 34.615 0.00 0.00 0.00 2.57
2551 4989 6.475402 GTGAACTTTGGTGGTTTTCAGTAATG 59.525 38.462 0.00 0.00 0.00 1.90
2552 4990 6.153680 TGTGAACTTTGGTGGTTTTCAGTAAT 59.846 34.615 0.00 0.00 0.00 1.89
2553 4991 5.477291 TGTGAACTTTGGTGGTTTTCAGTAA 59.523 36.000 0.00 0.00 0.00 2.24
2554 4992 5.010933 TGTGAACTTTGGTGGTTTTCAGTA 58.989 37.500 0.00 0.00 0.00 2.74
2555 4993 3.829601 TGTGAACTTTGGTGGTTTTCAGT 59.170 39.130 0.00 0.00 0.00 3.41
2556 4994 4.448537 TGTGAACTTTGGTGGTTTTCAG 57.551 40.909 0.00 0.00 0.00 3.02
2557 4995 4.561105 GTTGTGAACTTTGGTGGTTTTCA 58.439 39.130 0.00 0.00 0.00 2.69
2558 4996 3.930229 GGTTGTGAACTTTGGTGGTTTTC 59.070 43.478 0.00 0.00 0.00 2.29
2559 4997 3.325135 TGGTTGTGAACTTTGGTGGTTTT 59.675 39.130 0.00 0.00 0.00 2.43
2560 4998 2.900546 TGGTTGTGAACTTTGGTGGTTT 59.099 40.909 0.00 0.00 0.00 3.27
2561 4999 2.495669 CTGGTTGTGAACTTTGGTGGTT 59.504 45.455 0.00 0.00 0.00 3.67
2562 5000 2.099405 CTGGTTGTGAACTTTGGTGGT 58.901 47.619 0.00 0.00 0.00 4.16
2563 5001 2.374184 TCTGGTTGTGAACTTTGGTGG 58.626 47.619 0.00 0.00 0.00 4.61
2564 5002 4.097741 TGAATCTGGTTGTGAACTTTGGTG 59.902 41.667 0.00 0.00 0.00 4.17
2565 5003 4.277476 TGAATCTGGTTGTGAACTTTGGT 58.723 39.130 0.00 0.00 0.00 3.67
2566 5004 4.339247 ACTGAATCTGGTTGTGAACTTTGG 59.661 41.667 0.00 0.00 0.00 3.28
2567 5005 5.297776 AGACTGAATCTGGTTGTGAACTTTG 59.702 40.000 0.00 0.00 35.81 2.77
2568 5006 5.440610 AGACTGAATCTGGTTGTGAACTTT 58.559 37.500 0.00 0.00 35.81 2.66
2569 5007 5.041191 AGACTGAATCTGGTTGTGAACTT 57.959 39.130 0.00 0.00 35.81 2.66
2570 5008 4.696479 AGACTGAATCTGGTTGTGAACT 57.304 40.909 0.00 0.00 35.81 3.01
2571 5009 6.861065 TTTAGACTGAATCTGGTTGTGAAC 57.139 37.500 0.00 0.00 38.49 3.18
2572 5010 7.279615 TCTTTTAGACTGAATCTGGTTGTGAA 58.720 34.615 0.00 0.00 38.49 3.18
2573 5011 6.826668 TCTTTTAGACTGAATCTGGTTGTGA 58.173 36.000 0.00 0.00 38.49 3.58
2574 5012 7.496529 TTCTTTTAGACTGAATCTGGTTGTG 57.503 36.000 0.00 0.00 38.49 3.33
2575 5013 7.229506 CCTTTCTTTTAGACTGAATCTGGTTGT 59.770 37.037 0.00 0.00 38.49 3.32
2576 5014 7.445402 TCCTTTCTTTTAGACTGAATCTGGTTG 59.555 37.037 0.00 0.00 38.49 3.77
2577 5015 7.445707 GTCCTTTCTTTTAGACTGAATCTGGTT 59.554 37.037 0.00 0.00 38.49 3.67
2578 5016 6.937465 GTCCTTTCTTTTAGACTGAATCTGGT 59.063 38.462 0.00 0.00 38.49 4.00
2579 5017 7.164803 AGTCCTTTCTTTTAGACTGAATCTGG 58.835 38.462 0.00 0.00 38.15 3.86
2580 5018 9.712305 TTAGTCCTTTCTTTTAGACTGAATCTG 57.288 33.333 1.90 0.00 39.80 2.90
2584 5022 8.823818 CGTTTTAGTCCTTTCTTTTAGACTGAA 58.176 33.333 1.90 0.00 39.80 3.02
2585 5023 7.042254 GCGTTTTAGTCCTTTCTTTTAGACTGA 60.042 37.037 1.90 0.00 39.80 3.41
2586 5024 7.041984 AGCGTTTTAGTCCTTTCTTTTAGACTG 60.042 37.037 1.90 0.00 39.80 3.51
2587 5025 6.990939 AGCGTTTTAGTCCTTTCTTTTAGACT 59.009 34.615 0.00 0.00 42.13 3.24
2588 5026 7.187244 AGCGTTTTAGTCCTTTCTTTTAGAC 57.813 36.000 0.00 0.00 0.00 2.59
2589 5027 7.386025 GGTAGCGTTTTAGTCCTTTCTTTTAGA 59.614 37.037 0.00 0.00 0.00 2.10
2590 5028 7.172019 TGGTAGCGTTTTAGTCCTTTCTTTTAG 59.828 37.037 0.00 0.00 0.00 1.85
2591 5029 6.991531 TGGTAGCGTTTTAGTCCTTTCTTTTA 59.008 34.615 0.00 0.00 0.00 1.52
2592 5030 5.824097 TGGTAGCGTTTTAGTCCTTTCTTTT 59.176 36.000 0.00 0.00 0.00 2.27
2593 5031 5.370679 TGGTAGCGTTTTAGTCCTTTCTTT 58.629 37.500 0.00 0.00 0.00 2.52
2594 5032 4.964593 TGGTAGCGTTTTAGTCCTTTCTT 58.035 39.130 0.00 0.00 0.00 2.52
2595 5033 4.040095 ACTGGTAGCGTTTTAGTCCTTTCT 59.960 41.667 0.00 0.00 0.00 2.52
2596 5034 4.313282 ACTGGTAGCGTTTTAGTCCTTTC 58.687 43.478 0.00 0.00 0.00 2.62
2597 5035 4.347360 ACTGGTAGCGTTTTAGTCCTTT 57.653 40.909 0.00 0.00 0.00 3.11
2598 5036 4.062991 CAACTGGTAGCGTTTTAGTCCTT 58.937 43.478 0.49 0.00 0.00 3.36
2599 5037 3.070590 ACAACTGGTAGCGTTTTAGTCCT 59.929 43.478 0.49 0.00 0.00 3.85
2600 5038 3.396560 ACAACTGGTAGCGTTTTAGTCC 58.603 45.455 0.49 0.00 0.00 3.85
2601 5039 4.150098 CAGACAACTGGTAGCGTTTTAGTC 59.850 45.833 0.00 5.47 40.14 2.59
2602 5040 4.056050 CAGACAACTGGTAGCGTTTTAGT 58.944 43.478 0.00 0.00 40.14 2.24
2603 5041 4.647291 CAGACAACTGGTAGCGTTTTAG 57.353 45.455 0.00 0.00 40.14 1.85
2609 5047 4.230624 AGGTGACAGACAACTGGTAGCG 62.231 54.545 0.00 0.00 45.73 4.26
2610 5048 1.344763 AGGTGACAGACAACTGGTAGC 59.655 52.381 0.00 0.00 45.73 3.58
2617 5055 5.057149 AGTATCAAACAGGTGACAGACAAC 58.943 41.667 0.00 0.00 36.27 3.32
2618 5056 5.290493 AGTATCAAACAGGTGACAGACAA 57.710 39.130 0.00 0.00 0.00 3.18
2619 5057 4.955811 AGTATCAAACAGGTGACAGACA 57.044 40.909 0.00 0.00 0.00 3.41
2620 5058 5.177696 GTGAAGTATCAAACAGGTGACAGAC 59.822 44.000 0.00 0.00 37.30 3.51
2816 5267 3.067601 TGATGATATTGTACACGCCGAGT 59.932 43.478 0.00 0.00 0.00 4.18
2849 5300 2.198827 TGAGTGCCATGTAAACCTGG 57.801 50.000 0.46 0.46 35.15 4.45
3121 5578 6.803154 ACTAGTTGCTGAAATTAACCTGTC 57.197 37.500 0.00 0.00 0.00 3.51
3156 5613 8.024865 CAGCATGATGAGTTGAACAAAAATAGA 58.975 33.333 4.56 0.00 39.69 1.98
3187 5645 1.396301 GGAGCAGAGTCAAGATTTGCG 59.604 52.381 0.00 0.00 39.63 4.85
3220 5678 6.406065 GGGTACACCAAAGAAGTAAAAGCAAA 60.406 38.462 0.00 0.00 39.85 3.68
3365 5824 2.737039 GCAAAGTTTTTGCCTCCGTTGA 60.737 45.455 13.97 0.00 39.38 3.18
3366 5825 1.592543 GCAAAGTTTTTGCCTCCGTTG 59.407 47.619 13.97 0.00 39.38 4.10
3455 5916 7.094592 GGGAATCTATTAATCCAAGTAAGCAGC 60.095 40.741 0.00 0.00 34.82 5.25
3472 5933 6.957020 AGCTAGCATTAGTACTGGGAATCTAT 59.043 38.462 18.83 0.00 0.00 1.98
3479 5940 4.281941 TCATCAGCTAGCATTAGTACTGGG 59.718 45.833 18.83 0.69 0.00 4.45
3573 6034 6.544038 AAATTTTTGGTGCTCAATTAGTGC 57.456 33.333 0.00 0.00 34.98 4.40
3584 6045 7.677041 GCCTCTGCATAAATAAATTTTTGGTGC 60.677 37.037 0.00 2.49 37.47 5.01
3589 6050 8.313292 TCACAGCCTCTGCATAAATAAATTTTT 58.687 29.630 0.00 0.00 41.13 1.94
3656 6117 0.464373 TGATGATCGCTTGGCTTCCC 60.464 55.000 0.00 0.00 0.00 3.97
3896 6357 4.363990 ACCAGCGACGTCAGGCAG 62.364 66.667 17.16 8.53 0.00 4.85
4439 6900 3.418744 GAAGGACGCGAGGCTCTCC 62.419 68.421 15.93 12.76 40.87 3.71
4526 6987 1.210155 GCTGCCAATGACGGTGAAC 59.790 57.895 0.00 0.00 0.00 3.18
4638 7099 0.452784 GCGAGTTCAATGGTGTTCGC 60.453 55.000 0.81 0.81 40.22 4.70
4727 7194 1.028868 GCATCTGCTTGTCCTCCACC 61.029 60.000 0.00 0.00 38.21 4.61
4971 7438 1.143305 CAGAACAGAAGCCTCGTGTG 58.857 55.000 0.00 0.00 0.00 3.82
4977 7444 2.495669 GCTAGAGACAGAACAGAAGCCT 59.504 50.000 0.00 0.00 0.00 4.58
5003 7470 5.390885 CGTTACAATTTACAGCAGCATGTCT 60.391 40.000 0.00 0.00 39.31 3.41
5043 7510 9.663904 ATTTCATCAAACGTAATATTTCCATCG 57.336 29.630 0.00 0.00 0.00 3.84
5090 7563 1.731433 CGGTCGATGTATCACCCCGT 61.731 60.000 0.00 0.00 0.00 5.28
5175 7764 1.543429 GCACCACTAGTCTTGTTGCCT 60.543 52.381 0.00 0.00 0.00 4.75
5185 7776 2.347490 CCAAGCCGCACCACTAGT 59.653 61.111 0.00 0.00 0.00 2.57
5198 7789 2.282674 TTGCAGCAGAGGGCCAAG 60.283 61.111 6.18 0.00 46.50 3.61
5199 7790 2.598394 GTTGCAGCAGAGGGCCAA 60.598 61.111 6.18 0.00 46.50 4.52
5200 7791 3.855503 CTGTTGCAGCAGAGGGCCA 62.856 63.158 24.75 0.00 46.50 5.36
5202 7793 3.060615 CCTGTTGCAGCAGAGGGC 61.061 66.667 29.70 0.00 45.30 5.19
5205 7796 2.039405 GGCTCCTGTTGCAGCAGAG 61.039 63.158 29.70 23.26 38.70 3.35
5206 7797 2.033141 GGCTCCTGTTGCAGCAGA 59.967 61.111 29.70 15.45 38.70 4.26
5207 7798 1.584380 GAAGGCTCCTGTTGCAGCAG 61.584 60.000 22.44 22.44 37.38 4.24
5208 7799 1.601759 GAAGGCTCCTGTTGCAGCA 60.602 57.895 2.37 2.37 37.38 4.41
5209 7800 0.892814 AAGAAGGCTCCTGTTGCAGC 60.893 55.000 0.00 0.00 34.65 5.25
5226 7817 6.966534 AGAATGGTTAAGGGATATTGCAAG 57.033 37.500 4.94 0.00 0.00 4.01
5240 7831 7.014230 CCTTGTTTCAGAAGGAAAGAATGGTTA 59.986 37.037 0.00 0.00 44.69 2.85
5248 7839 3.225940 AGGCCTTGTTTCAGAAGGAAAG 58.774 45.455 0.00 0.00 45.76 2.62
5284 7878 7.654923 GGATGGGAAAGAATAATGAGATTTTGC 59.345 37.037 0.00 0.00 0.00 3.68
5292 7892 9.135189 CTTTGTATGGATGGGAAAGAATAATGA 57.865 33.333 0.00 0.00 0.00 2.57
5302 7902 2.311542 AGCACCTTTGTATGGATGGGAA 59.688 45.455 0.00 0.00 0.00 3.97
5303 7903 1.922447 AGCACCTTTGTATGGATGGGA 59.078 47.619 0.00 0.00 0.00 4.37
5307 7907 3.614092 CTCACAGCACCTTTGTATGGAT 58.386 45.455 0.00 0.00 0.00 3.41
5335 7935 1.434188 TTATGCGATGGGAGGGTGAT 58.566 50.000 0.00 0.00 0.00 3.06
5336 7936 1.347707 GATTATGCGATGGGAGGGTGA 59.652 52.381 0.00 0.00 0.00 4.02
5338 7938 0.693049 GGATTATGCGATGGGAGGGT 59.307 55.000 0.00 0.00 0.00 4.34
5348 7948 9.537848 GGAATTTTTATAGTAACGGATTATGCG 57.462 33.333 4.24 4.24 37.19 4.73
5401 8001 5.133221 ACCATTGCATGTCCTAATAGAACC 58.867 41.667 0.00 0.00 0.00 3.62
5405 8005 6.487668 TGATTGACCATTGCATGTCCTAATAG 59.512 38.462 8.52 0.00 0.00 1.73
5406 8006 6.363882 TGATTGACCATTGCATGTCCTAATA 58.636 36.000 8.52 0.00 0.00 0.98
5463 8063 9.507329 AATCTGTCAAATTACATGTGAGTTAGT 57.493 29.630 9.11 0.00 0.00 2.24
5472 8072 5.957798 AGCACCAATCTGTCAAATTACATG 58.042 37.500 0.00 0.00 0.00 3.21
5488 8089 3.366883 GGCAAACGATGATTTAGCACCAA 60.367 43.478 0.00 0.00 0.00 3.67
5529 8130 7.148869 GGTTCAATTGTATTTTAAAGGTGTCGC 60.149 37.037 5.13 0.00 0.00 5.19
5530 8131 7.327518 GGGTTCAATTGTATTTTAAAGGTGTCG 59.672 37.037 5.13 0.00 0.00 4.35
5587 8188 1.066143 CGGGCTTCACAATACTGACCT 60.066 52.381 0.00 0.00 0.00 3.85
5593 8194 0.381801 CCATGCGGGCTTCACAATAC 59.618 55.000 0.00 0.00 0.00 1.89
5607 8208 6.465439 AAAACTTAGCCCTATAAACCATGC 57.535 37.500 0.00 0.00 0.00 4.06
5616 8217 4.150897 TGCATCGAAAACTTAGCCCTAT 57.849 40.909 0.00 0.00 0.00 2.57
5693 8294 5.065859 ACATAAAAGCTGGTTTGTTTTTGGC 59.934 36.000 5.50 0.00 33.60 4.52
5698 8299 9.777297 ATTTGATACATAAAAGCTGGTTTGTTT 57.223 25.926 5.50 0.00 0.00 2.83
5701 8302 8.984891 TGATTTGATACATAAAAGCTGGTTTG 57.015 30.769 5.50 0.00 0.00 2.93
5755 8356 7.820386 TCACACCTCGCTCTTTATTTATTGTTA 59.180 33.333 0.00 0.00 0.00 2.41
5756 8357 6.653320 TCACACCTCGCTCTTTATTTATTGTT 59.347 34.615 0.00 0.00 0.00 2.83
5773 8374 1.204704 TCCATCGTCACATCACACCTC 59.795 52.381 0.00 0.00 0.00 3.85
5774 8375 1.205655 CTCCATCGTCACATCACACCT 59.794 52.381 0.00 0.00 0.00 4.00
5775 8376 1.066858 ACTCCATCGTCACATCACACC 60.067 52.381 0.00 0.00 0.00 4.16
5787 8415 5.330455 ACATATATGTGCCTACTCCATCG 57.670 43.478 17.60 0.00 40.03 3.84
5805 8435 5.048782 GCTCTTTGTTTGGACATCACACATA 60.049 40.000 0.00 0.00 36.14 2.29
5849 8479 4.232221 CACTGCATTTGTTTGGTCATCTC 58.768 43.478 0.00 0.00 0.00 2.75
5937 8568 5.518128 CCAGAATGTCGAGTCTGTTATTCAG 59.482 44.000 15.76 0.00 41.78 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.