Multiple sequence alignment - TraesCS2B01G122800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G122800 chr2B 100.000 8895 0 0 1 8895 90347863 90356757 0.000000e+00 16427.0
1 TraesCS2B01G122800 chr2B 93.014 1231 74 4 5746 6967 90358106 90359333 0.000000e+00 1786.0
2 TraesCS2B01G122800 chr2B 89.547 574 44 7 3149 3717 90188980 90188418 0.000000e+00 713.0
3 TraesCS2B01G122800 chr2B 88.664 247 19 6 2655 2898 90195518 90195278 8.730000e-75 292.0
4 TraesCS2B01G122800 chr2B 89.756 205 19 2 2896 3099 90189421 90189218 2.460000e-65 261.0
5 TraesCS2B01G122800 chr2B 100.000 28 0 0 4070 4097 90351773 90351800 1.600000e-02 52.8
6 TraesCS2B01G122800 chr2B 100.000 28 0 0 3911 3938 90351932 90351959 1.600000e-02 52.8
7 TraesCS2B01G122800 chr2D 93.263 4379 202 27 4098 8462 57078900 57083199 0.000000e+00 6366.0
8 TraesCS2B01G122800 chr2D 87.933 1732 84 43 1 1645 57074204 57075897 0.000000e+00 1925.0
9 TraesCS2B01G122800 chr2D 83.467 1742 217 30 5746 7441 57084416 57086132 0.000000e+00 1555.0
10 TraesCS2B01G122800 chr2D 89.486 875 51 19 3149 4002 57077997 57078851 0.000000e+00 1068.0
11 TraesCS2B01G122800 chr2D 87.845 724 51 19 1716 2418 57076180 57076887 0.000000e+00 815.0
12 TraesCS2B01G122800 chr2D 92.053 302 22 2 2897 3198 57077521 57077820 2.970000e-114 424.0
13 TraesCS2B01G122800 chr2D 88.380 284 9 9 8608 8869 57083352 57083633 4.010000e-83 320.0
14 TraesCS2B01G122800 chr2D 95.833 96 4 0 8506 8601 57083199 57083294 1.200000e-33 156.0
15 TraesCS2B01G122800 chr2A 92.430 4544 207 41 4097 8601 58327801 58332246 0.000000e+00 6359.0
16 TraesCS2B01G122800 chr2A 85.533 2046 108 65 1 1943 58323485 58325445 0.000000e+00 1965.0
17 TraesCS2B01G122800 chr2A 89.133 865 54 12 3149 4002 58326919 58327754 0.000000e+00 1040.0
18 TraesCS2B01G122800 chr2A 89.579 451 25 8 1983 2418 58325443 58325886 3.630000e-153 553.0
19 TraesCS2B01G122800 chr2A 87.705 366 32 11 2411 2773 58325919 58326274 1.790000e-111 414.0
20 TraesCS2B01G122800 chr2A 91.611 298 21 4 2897 3194 58326512 58326805 8.310000e-110 409.0
21 TraesCS2B01G122800 chr2A 90.576 191 7 4 8608 8789 58332304 58332492 8.920000e-60 243.0
22 TraesCS2B01G122800 chr2A 100.000 32 0 0 8755 8786 58332584 58332615 9.640000e-05 60.2
23 TraesCS2B01G122800 chr3B 88.205 195 23 0 1430 1624 442043413 442043607 5.370000e-57 233.0
24 TraesCS2B01G122800 chr7B 83.708 178 28 1 1420 1597 515590322 515590498 5.520000e-37 167.0
25 TraesCS2B01G122800 chr7B 84.615 117 11 6 2752 2865 593565578 593565690 9.440000e-20 110.0
26 TraesCS2B01G122800 chr7B 88.043 92 8 3 2774 2865 699909372 699909460 1.220000e-18 106.0
27 TraesCS2B01G122800 chr7B 84.404 109 14 2 2757 2865 622425774 622425669 4.390000e-18 104.0
28 TraesCS2B01G122800 chr7D 91.026 78 4 3 2788 2865 610829438 610829512 1.580000e-17 102.0
29 TraesCS2B01G122800 chr5A 91.026 78 4 2 2788 2865 338149516 338149442 1.580000e-17 102.0
30 TraesCS2B01G122800 chr1B 82.609 115 16 3 2752 2865 237130069 237130180 2.040000e-16 99.0
31 TraesCS2B01G122800 chr3D 100.000 32 0 0 2802 2833 556001595 556001626 9.640000e-05 60.2
32 TraesCS2B01G122800 chr3A 100.000 32 0 0 2802 2833 692903489 692903520 9.640000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G122800 chr2B 90347863 90356757 8894 False 16427.000 16427 100.000000 1 8895 1 chr2B.!!$F1 8894
1 TraesCS2B01G122800 chr2B 90358106 90359333 1227 False 1786.000 1786 93.014000 5746 6967 1 chr2B.!!$F2 1221
2 TraesCS2B01G122800 chr2B 90188418 90189421 1003 True 487.000 713 89.651500 2896 3717 2 chr2B.!!$R2 821
3 TraesCS2B01G122800 chr2D 57074204 57086132 11928 False 1578.625 6366 89.782500 1 8869 8 chr2D.!!$F1 8868
4 TraesCS2B01G122800 chr2A 58323485 58332615 9130 False 1380.400 6359 90.820875 1 8789 8 chr2A.!!$F1 8788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
515 551 0.244721 TGCACAGACAGTCAGATCCG 59.755 55.000 2.66 0.00 0.00 4.18 F
751 799 0.375106 GGACGAGGGAAGTACGTACG 59.625 60.000 19.49 15.01 40.29 3.67 F
1776 2117 0.750182 CCGTCCCGCACCCAATTAAT 60.750 55.000 0.00 0.00 0.00 1.40 F
3064 3600 0.250338 GACACCCAAAGCTCGAACCT 60.250 55.000 0.00 0.00 0.00 3.50 F
3567 4397 0.035458 TGGACACACACACACACACA 59.965 50.000 0.00 0.00 0.00 3.72 F
4350 5224 0.027455 CGTCTGTTGTTTGCTCGCAA 59.973 50.000 0.00 0.00 0.00 4.85 F
5655 6544 1.127582 GCAGCAAACTCTCGTGTCATC 59.872 52.381 0.00 0.00 0.00 2.92 F
6846 7750 0.589729 CAATTTCCGATTGCTCGCCG 60.590 55.000 0.00 0.00 43.66 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1782 2123 0.554305 ACGGGAAGACCTTTTTGGGT 59.446 50.0 0.00 0.00 43.07 4.51 R
1783 2124 1.699730 AACGGGAAGACCTTTTTGGG 58.300 50.0 0.00 0.00 41.11 4.12 R
3564 4394 0.041926 CATGCTCGTGTGTGTGTGTG 60.042 55.0 0.00 0.00 0.00 3.82 R
4027 4898 0.179200 GGCGGCATTTGAGTACAACG 60.179 55.0 3.07 0.00 35.63 4.10 R
5344 6233 0.174162 AATTCCTCATTTGCGGCAGC 59.826 50.0 1.67 0.31 45.41 5.25 R
5694 6583 1.310933 CGCAAGGCAGCCTGAGAATT 61.311 55.0 17.05 0.00 32.13 2.17 R
7045 7957 0.032540 GCTTGAAGGGGTTGTGCTTG 59.967 55.0 0.00 0.00 0.00 4.01 R
8522 9451 0.179094 TGAGTTGCGTTGGTTCGAGT 60.179 50.0 0.00 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.587772 ACCATCATTAACTAGACGATATATTGC 57.412 33.333 0.00 0.00 0.00 3.56
51 52 3.444742 ACGATATATTGCGGGGATACGAA 59.555 43.478 0.00 0.00 35.47 3.85
61 62 2.476821 GGGGATACGAATAACACACCG 58.523 52.381 0.00 0.00 37.60 4.94
74 75 2.824041 CACCGCCCCACATAGCAC 60.824 66.667 0.00 0.00 0.00 4.40
90 91 2.437716 ACCCGTAGCGCATTTGGG 60.438 61.111 21.04 21.04 45.70 4.12
118 119 6.969993 AGTAGGTGGCAAAATACAAAGAAA 57.030 33.333 0.00 0.00 0.00 2.52
119 120 6.981722 AGTAGGTGGCAAAATACAAAGAAAG 58.018 36.000 0.00 0.00 0.00 2.62
120 121 6.775629 AGTAGGTGGCAAAATACAAAGAAAGA 59.224 34.615 0.00 0.00 0.00 2.52
121 122 6.670695 AGGTGGCAAAATACAAAGAAAGAT 57.329 33.333 0.00 0.00 0.00 2.40
160 161 2.796593 GTGCTGACAAAATGCTTTGACC 59.203 45.455 5.51 0.00 44.03 4.02
208 211 7.012044 ACCACGAAATATTTCCTAGGATTTTCG 59.988 37.037 31.81 31.81 33.68 3.46
212 215 6.884280 AATATTTCCTAGGATTTTCGGCAG 57.116 37.500 13.57 0.00 0.00 4.85
243 246 1.497161 CATCCCCGTATATCTCCCCC 58.503 60.000 0.00 0.00 0.00 5.40
246 249 2.707849 CCCGTATATCTCCCCCGCG 61.708 68.421 0.00 0.00 0.00 6.46
327 350 1.893919 GATATCGGCAGCCCCTCCTC 61.894 65.000 5.63 0.00 0.00 3.71
342 365 1.898574 CCTCGTTTTGGCACTGGCT 60.899 57.895 3.97 0.00 40.87 4.75
382 405 0.752054 ATGCCGCATAAAACCCATGG 59.248 50.000 3.36 4.14 0.00 3.66
399 422 3.259876 CCATGGAATAAATGGGCATCAGG 59.740 47.826 5.56 0.00 40.86 3.86
515 551 0.244721 TGCACAGACAGTCAGATCCG 59.755 55.000 2.66 0.00 0.00 4.18
593 629 0.545071 TCCTGTCTCTGCCACCATCA 60.545 55.000 0.00 0.00 0.00 3.07
595 631 0.392193 CTGTCTCTGCCACCATCACC 60.392 60.000 0.00 0.00 0.00 4.02
597 633 1.538629 TCTCTGCCACCATCACCCA 60.539 57.895 0.00 0.00 0.00 4.51
598 634 1.077930 CTCTGCCACCATCACCCAG 60.078 63.158 0.00 0.00 0.00 4.45
600 636 4.365111 TGCCACCATCACCCAGCC 62.365 66.667 0.00 0.00 0.00 4.85
602 638 4.033776 CCACCATCACCCAGCCGT 62.034 66.667 0.00 0.00 0.00 5.68
603 639 2.436646 CACCATCACCCAGCCGTC 60.437 66.667 0.00 0.00 0.00 4.79
604 640 3.717294 ACCATCACCCAGCCGTCC 61.717 66.667 0.00 0.00 0.00 4.79
605 641 4.489771 CCATCACCCAGCCGTCCC 62.490 72.222 0.00 0.00 0.00 4.46
606 642 3.402681 CATCACCCAGCCGTCCCT 61.403 66.667 0.00 0.00 0.00 4.20
644 680 2.525629 TTCCACTCTCGGCCACCA 60.526 61.111 2.24 0.00 0.00 4.17
748 796 0.620556 TAGGGACGAGGGAAGTACGT 59.379 55.000 0.00 0.00 42.84 3.57
749 797 0.620556 AGGGACGAGGGAAGTACGTA 59.379 55.000 0.00 0.00 40.29 3.57
750 798 0.735471 GGGACGAGGGAAGTACGTAC 59.265 60.000 18.10 18.10 40.29 3.67
751 799 0.375106 GGACGAGGGAAGTACGTACG 59.625 60.000 19.49 15.01 40.29 3.67
801 853 4.608774 ACCGAGGGGTCACGTCCA 62.609 66.667 0.00 0.00 46.01 4.02
858 911 2.014128 GTGATTGGATTACGTGGTGGG 58.986 52.381 0.00 0.00 0.00 4.61
914 967 1.792301 CCTTGTGCTGATGCTGACG 59.208 57.895 0.00 0.00 40.48 4.35
1019 1072 3.155167 GGCGTCCTCCTACCCCAG 61.155 72.222 0.00 0.00 0.00 4.45
1113 1166 2.359478 GGCCACCACTACAACGGG 60.359 66.667 0.00 0.00 0.00 5.28
1203 1256 4.197498 CACGGGTACGGCTACGGG 62.197 72.222 0.00 0.00 46.48 5.28
1224 1277 2.837291 GGCCACCACCAGCAACAA 60.837 61.111 0.00 0.00 0.00 2.83
1239 1292 1.891722 AACAAGGGTACGGCTACGGG 61.892 60.000 0.00 0.00 46.48 5.28
1646 1762 2.642254 CCTTCGGGTGCGAGGTACA 61.642 63.158 0.00 0.00 0.00 2.90
1647 1763 1.445582 CTTCGGGTGCGAGGTACAC 60.446 63.158 0.00 0.00 37.31 2.90
1776 2117 0.750182 CCGTCCCGCACCCAATTAAT 60.750 55.000 0.00 0.00 0.00 1.40
1777 2118 1.475392 CCGTCCCGCACCCAATTAATA 60.475 52.381 0.00 0.00 0.00 0.98
1779 2120 2.032426 CGTCCCGCACCCAATTAATAAC 59.968 50.000 0.00 0.00 0.00 1.89
1780 2121 3.018149 GTCCCGCACCCAATTAATAACA 58.982 45.455 0.00 0.00 0.00 2.41
1781 2122 3.444388 GTCCCGCACCCAATTAATAACAA 59.556 43.478 0.00 0.00 0.00 2.83
1782 2123 4.082136 GTCCCGCACCCAATTAATAACAAA 60.082 41.667 0.00 0.00 0.00 2.83
1783 2124 4.082136 TCCCGCACCCAATTAATAACAAAC 60.082 41.667 0.00 0.00 0.00 2.93
1797 2138 9.772973 ATTAATAACAAACCCAAAAAGGTCTTC 57.227 29.630 0.00 0.00 40.05 2.87
1889 2240 0.392193 ATCGCTTTCACCTGGAGCAG 60.392 55.000 0.00 0.00 36.22 4.24
1932 2283 4.208686 CGCCCTCGTAGGTGCCTC 62.209 72.222 0.00 0.00 31.93 4.70
2005 2356 7.256908 GGGTTTGGTTAGGATAGGATATTGCTA 60.257 40.741 0.00 0.00 0.00 3.49
2013 2364 7.863901 AGGATAGGATATTGCTAGTCTTTGT 57.136 36.000 0.00 0.00 0.00 2.83
2014 2365 8.268878 AGGATAGGATATTGCTAGTCTTTGTT 57.731 34.615 0.00 0.00 0.00 2.83
2015 2366 9.381038 AGGATAGGATATTGCTAGTCTTTGTTA 57.619 33.333 0.00 0.00 0.00 2.41
2016 2367 9.998106 GGATAGGATATTGCTAGTCTTTGTTAA 57.002 33.333 0.00 0.00 0.00 2.01
2124 2493 6.476378 AGTAGTGCACAAGTATTTGGATCTT 58.524 36.000 21.04 0.00 38.66 2.40
2125 2494 7.620880 AGTAGTGCACAAGTATTTGGATCTTA 58.379 34.615 21.04 0.00 38.66 2.10
2160 2532 4.245660 GTTGTACGGACCTAAAGTTACCC 58.754 47.826 0.00 0.00 0.00 3.69
2166 2538 3.708121 CGGACCTAAAGTTACCCATACCT 59.292 47.826 0.00 0.00 0.00 3.08
2176 2548 4.724798 AGTTACCCATACCTGGATTAAGCA 59.275 41.667 0.00 0.00 46.37 3.91
2177 2549 5.372661 AGTTACCCATACCTGGATTAAGCAT 59.627 40.000 0.00 0.00 46.37 3.79
2186 2558 8.873830 CATACCTGGATTAAGCATATAAAGTCG 58.126 37.037 0.00 0.00 0.00 4.18
2239 2615 7.371159 GGGCCATAAAATACTGATTTAAGAGC 58.629 38.462 4.39 0.00 34.01 4.09
2248 2624 7.798596 ATACTGATTTAAGAGCCATTCACTG 57.201 36.000 0.00 0.00 0.00 3.66
2288 2664 8.792633 CAAATCTAGTTAATGGTTCCAACTTGA 58.207 33.333 8.06 8.06 38.03 3.02
2321 2697 5.979993 TGCAGCATGTGATAAATCCATTTT 58.020 33.333 0.00 0.00 39.31 1.82
2322 2698 6.408035 TGCAGCATGTGATAAATCCATTTTT 58.592 32.000 0.00 0.00 39.31 1.94
2405 2781 8.178313 TGCTTTAAGATAGGTCTATCGATGAA 57.822 34.615 8.54 7.61 44.93 2.57
2461 2877 7.715249 ACTCAAAATAAAAGAAAGGGGCTTTTC 59.285 33.333 0.00 6.84 42.68 2.29
2462 2878 7.569240 TCAAAATAAAAGAAAGGGGCTTTTCA 58.431 30.769 14.31 0.00 42.68 2.69
2464 2880 8.849168 CAAAATAAAAGAAAGGGGCTTTTCATT 58.151 29.630 14.31 8.10 42.68 2.57
2496 2912 7.915293 TGTGTGGATTAATACTTCAAATCGT 57.085 32.000 0.00 0.00 31.70 3.73
2586 3004 9.674068 TTACATTCAAAATAAAATAAAGGGGCC 57.326 29.630 0.00 0.00 0.00 5.80
2621 3039 7.509546 AGAAAACTTGGATGACTACTTCAAGA 58.490 34.615 8.14 0.00 37.92 3.02
2639 3057 9.442047 ACTTCAAGAGTTGTTCTAATGGATAAG 57.558 33.333 0.00 0.00 33.92 1.73
2642 3060 9.658799 TCAAGAGTTGTTCTAATGGATAAGAAG 57.341 33.333 0.00 0.00 34.14 2.85
2664 3082 9.336171 AGAAGAGCAGGAACATATATTTCTTTC 57.664 33.333 0.00 0.00 0.00 2.62
2742 3162 7.054124 ACAACATGGATGGATACTTAAATCGT 58.946 34.615 0.00 0.00 37.61 3.73
2849 3270 5.738619 GAAAGGGGCTTTCCATAAGAAAA 57.261 39.130 0.00 0.00 43.84 2.29
2851 3272 3.089284 AGGGGCTTTCCATAAGAAAACG 58.911 45.455 0.00 0.00 43.84 3.60
2852 3273 2.823747 GGGGCTTTCCATAAGAAAACGT 59.176 45.455 0.00 0.00 43.84 3.99
2854 3275 3.366985 GGGCTTTCCATAAGAAAACGTGG 60.367 47.826 0.00 0.00 43.84 4.94
2855 3276 3.504520 GGCTTTCCATAAGAAAACGTGGA 59.495 43.478 0.00 0.00 43.84 4.02
2857 3278 5.095490 GCTTTCCATAAGAAAACGTGGATG 58.905 41.667 0.00 0.00 43.84 3.51
2858 3279 5.106317 GCTTTCCATAAGAAAACGTGGATGA 60.106 40.000 0.00 0.00 43.84 2.92
2859 3280 6.569610 GCTTTCCATAAGAAAACGTGGATGAA 60.570 38.462 0.00 0.00 43.84 2.57
2860 3281 5.873179 TCCATAAGAAAACGTGGATGAAC 57.127 39.130 0.00 0.00 35.91 3.18
2861 3282 5.309638 TCCATAAGAAAACGTGGATGAACA 58.690 37.500 0.00 0.00 35.91 3.18
2862 3283 5.180492 TCCATAAGAAAACGTGGATGAACAC 59.820 40.000 0.00 0.00 35.91 3.32
2865 3286 4.813296 AGAAAACGTGGATGAACACTTC 57.187 40.909 0.00 0.00 39.19 3.01
2866 3287 4.196193 AGAAAACGTGGATGAACACTTCA 58.804 39.130 0.00 0.00 45.01 3.02
2867 3288 4.638421 AGAAAACGTGGATGAACACTTCAA 59.362 37.500 0.00 0.00 43.95 2.69
2868 3289 4.974368 AAACGTGGATGAACACTTCAAA 57.026 36.364 0.00 0.00 43.95 2.69
2869 3290 5.514274 AAACGTGGATGAACACTTCAAAT 57.486 34.783 0.00 0.00 43.95 2.32
2871 3292 4.389374 ACGTGGATGAACACTTCAAATCT 58.611 39.130 0.00 0.00 43.95 2.40
2872 3293 4.821805 ACGTGGATGAACACTTCAAATCTT 59.178 37.500 0.00 0.00 43.95 2.40
2873 3294 5.149273 CGTGGATGAACACTTCAAATCTTG 58.851 41.667 0.00 0.00 43.95 3.02
2874 3295 5.049474 CGTGGATGAACACTTCAAATCTTGA 60.049 40.000 0.00 0.00 43.95 3.02
2875 3296 6.348786 CGTGGATGAACACTTCAAATCTTGAT 60.349 38.462 0.00 0.00 43.95 2.57
2876 3297 7.148423 CGTGGATGAACACTTCAAATCTTGATA 60.148 37.037 0.00 0.00 43.95 2.15
2877 3298 8.514594 GTGGATGAACACTTCAAATCTTGATAA 58.485 33.333 0.00 0.00 43.95 1.75
2878 3299 9.246670 TGGATGAACACTTCAAATCTTGATAAT 57.753 29.630 0.00 0.00 43.95 1.28
2903 3438 4.337264 ACAGGAATAGATTTTTGGGCCT 57.663 40.909 4.53 0.00 0.00 5.19
2961 3496 3.000819 TCCGCTCCGAACCACCAT 61.001 61.111 0.00 0.00 0.00 3.55
3021 3556 5.280113 CCTCCCCATTTTCAAACATGTCAAT 60.280 40.000 0.00 0.00 0.00 2.57
3042 3578 2.047443 GTCGGGCCGGGCATAAAAA 61.047 57.895 30.95 0.00 0.00 1.94
3059 3595 1.164041 AAACCGACACCCAAAGCTCG 61.164 55.000 0.00 0.00 0.00 5.03
3064 3600 0.250338 GACACCCAAAGCTCGAACCT 60.250 55.000 0.00 0.00 0.00 3.50
3141 3677 5.103855 AGTTGAGCTCCTAGTCATAGTACCT 60.104 44.000 12.15 0.00 0.00 3.08
3188 4015 2.757124 CCTAATCCCTGCCCGGCTT 61.757 63.158 11.61 0.00 0.00 4.35
3222 4049 2.482494 CCTGTCCTGAACCCTAATCCT 58.518 52.381 0.00 0.00 0.00 3.24
3241 4068 3.888930 TCCTCAATTTCCCACAACAAGAC 59.111 43.478 0.00 0.00 0.00 3.01
3265 4092 2.280524 GTAGCACACGCACACCCA 60.281 61.111 0.00 0.00 42.27 4.51
3285 4112 3.244561 CCAGGTGTCCCATATGTCCATAC 60.245 52.174 1.24 0.00 0.00 2.39
3312 4139 3.578456 GACATTGTCCAGGCGTGG 58.422 61.111 19.57 19.57 46.63 4.94
3325 4152 1.212751 GCGTGGCTGATTTGAACCC 59.787 57.895 0.00 0.00 0.00 4.11
3335 4163 4.502950 GCTGATTTGAACCCCAATTTGTCA 60.503 41.667 0.00 0.00 34.23 3.58
3336 4164 5.797051 CTGATTTGAACCCCAATTTGTCAT 58.203 37.500 0.00 0.00 34.23 3.06
3392 4220 4.618489 CCATTTTCAGACATTTCAACGAGC 59.382 41.667 0.00 0.00 0.00 5.03
3565 4395 2.847725 GTGGACACACACACACACA 58.152 52.632 0.00 0.00 46.90 3.72
3566 4396 0.446222 GTGGACACACACACACACAC 59.554 55.000 0.00 0.00 46.90 3.82
3567 4397 0.035458 TGGACACACACACACACACA 59.965 50.000 0.00 0.00 0.00 3.72
3568 4398 0.446222 GGACACACACACACACACAC 59.554 55.000 0.00 0.00 0.00 3.82
3569 4399 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
3570 4400 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3571 4401 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3572 4402 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3573 4403 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3574 4404 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3607 4449 2.552315 CAAGCACAAAATGTACCCGAGT 59.448 45.455 0.00 0.00 0.00 4.18
3734 4595 2.693762 GCGTCCCTTTTTACCGGCC 61.694 63.158 0.00 0.00 0.00 6.13
3736 4597 1.679977 GTCCCTTTTTACCGGCCCC 60.680 63.158 0.00 0.00 0.00 5.80
3738 4599 1.001120 CCCTTTTTACCGGCCCCAT 59.999 57.895 0.00 0.00 0.00 4.00
3805 4676 2.694760 CCAGCCTTTCTGCTTCGCC 61.695 63.158 0.00 0.00 40.32 5.54
3833 4704 4.794439 TCCGCCGTCGCATGACTG 62.794 66.667 0.00 0.00 43.21 3.51
3913 4784 4.819105 TGTCCGTCTACAAGATTTCCAT 57.181 40.909 0.00 0.00 0.00 3.41
3914 4785 4.503910 TGTCCGTCTACAAGATTTCCATG 58.496 43.478 0.00 0.00 0.00 3.66
3915 4786 3.309954 GTCCGTCTACAAGATTTCCATGC 59.690 47.826 0.00 0.00 0.00 4.06
3955 4826 3.126343 GTGCTTCGTACACTTTTATGGGG 59.874 47.826 0.00 0.00 35.12 4.96
4002 4873 6.613755 ACACAAAAATGTGAGTACCACTAC 57.386 37.500 15.26 0.00 45.86 2.73
4005 4876 7.656137 ACACAAAAATGTGAGTACCACTACTAG 59.344 37.037 15.26 0.00 45.86 2.57
4006 4877 7.870954 CACAAAAATGTGAGTACCACTACTAGA 59.129 37.037 13.41 0.00 45.86 2.43
4007 4878 8.426489 ACAAAAATGTGAGTACCACTACTAGAA 58.574 33.333 13.41 0.00 45.86 2.10
4008 4879 9.436957 CAAAAATGTGAGTACCACTACTAGAAT 57.563 33.333 13.41 0.00 45.86 2.40
4035 4906 7.718272 TTTTAAATGTGCTAGTCGTTGTACT 57.282 32.000 0.00 0.00 0.00 2.73
4036 4907 6.939551 TTAAATGTGCTAGTCGTTGTACTC 57.060 37.500 0.00 0.00 0.00 2.59
4037 4908 4.514781 AATGTGCTAGTCGTTGTACTCA 57.485 40.909 0.00 0.00 0.00 3.41
4039 4910 4.310357 TGTGCTAGTCGTTGTACTCAAA 57.690 40.909 0.00 0.00 35.20 2.69
4040 4911 4.878439 TGTGCTAGTCGTTGTACTCAAAT 58.122 39.130 0.00 0.00 35.20 2.32
4041 4912 4.684242 TGTGCTAGTCGTTGTACTCAAATG 59.316 41.667 0.00 0.00 35.20 2.32
4042 4913 3.678072 TGCTAGTCGTTGTACTCAAATGC 59.322 43.478 0.00 0.00 35.20 3.56
4043 4914 3.062234 GCTAGTCGTTGTACTCAAATGCC 59.938 47.826 0.00 0.00 35.20 4.40
4044 4915 2.066262 AGTCGTTGTACTCAAATGCCG 58.934 47.619 0.00 0.00 35.20 5.69
4049 4920 0.604243 TGTACTCAAATGCCGCCGTT 60.604 50.000 0.00 0.00 0.00 4.44
4050 4921 0.179200 GTACTCAAATGCCGCCGTTG 60.179 55.000 0.00 0.00 0.00 4.10
4051 4922 0.604243 TACTCAAATGCCGCCGTTGT 60.604 50.000 3.75 0.00 0.00 3.32
4052 4923 1.285641 CTCAAATGCCGCCGTTGTT 59.714 52.632 3.75 0.00 0.00 2.83
4053 4924 1.003262 CTCAAATGCCGCCGTTGTTG 61.003 55.000 3.75 0.00 0.00 3.33
4054 4925 2.355718 AAATGCCGCCGTTGTTGC 60.356 55.556 0.00 0.00 0.00 4.17
4055 4926 3.144120 AAATGCCGCCGTTGTTGCA 62.144 52.632 0.00 0.00 38.23 4.08
4056 4927 3.839642 AATGCCGCCGTTGTTGCAC 62.840 57.895 0.00 0.00 36.41 4.57
4058 4929 4.683334 GCCGCCGTTGTTGCACTC 62.683 66.667 0.00 0.00 0.00 3.51
4059 4930 3.276091 CCGCCGTTGTTGCACTCA 61.276 61.111 0.00 0.00 0.00 3.41
4060 4931 2.712539 CGCCGTTGTTGCACTCAA 59.287 55.556 0.00 0.00 0.00 3.02
4061 4932 1.063327 CGCCGTTGTTGCACTCAAA 59.937 52.632 5.28 0.00 33.37 2.69
4062 4933 0.317770 CGCCGTTGTTGCACTCAAAT 60.318 50.000 5.28 0.00 33.37 2.32
4063 4934 1.130955 GCCGTTGTTGCACTCAAATG 58.869 50.000 5.28 2.51 33.37 2.32
4064 4935 1.535860 GCCGTTGTTGCACTCAAATGT 60.536 47.619 5.28 0.00 33.37 2.71
4065 4936 2.118683 CCGTTGTTGCACTCAAATGTG 58.881 47.619 5.28 0.00 40.62 3.21
4071 4942 4.517663 CACTCAAATGTGCCCCCA 57.482 55.556 0.00 0.00 0.00 4.96
4072 4943 2.980541 CACTCAAATGTGCCCCCAT 58.019 52.632 0.00 0.00 0.00 4.00
4073 4944 0.533491 CACTCAAATGTGCCCCCATG 59.467 55.000 0.00 0.00 0.00 3.66
4074 4945 1.259840 ACTCAAATGTGCCCCCATGC 61.260 55.000 0.00 0.00 0.00 4.06
4075 4946 1.963464 CTCAAATGTGCCCCCATGCC 61.963 60.000 0.00 0.00 0.00 4.40
4076 4947 3.076278 AAATGTGCCCCCATGCCG 61.076 61.111 0.00 0.00 0.00 5.69
4087 4958 4.465512 CATGCCGCCGTTGCACTC 62.466 66.667 0.00 0.00 42.38 3.51
4090 4961 3.959975 GCCGCCGTTGCACTCAAA 61.960 61.111 0.00 0.00 37.32 2.69
4091 4962 2.953821 CCGCCGTTGCACTCAAAT 59.046 55.556 0.00 0.00 37.32 2.32
4092 4963 1.442520 CCGCCGTTGCACTCAAATG 60.443 57.895 0.00 0.00 37.32 2.32
4093 4964 1.282570 CGCCGTTGCACTCAAATGT 59.717 52.632 0.00 0.00 37.32 2.71
4094 4965 0.998226 CGCCGTTGCACTCAAATGTG 60.998 55.000 0.00 0.00 40.62 3.21
4115 4986 7.979444 TGTGCTAGTCTTGTTAAAAATAGCT 57.021 32.000 9.73 0.00 36.12 3.32
4145 5016 3.787634 TCGTACTGCTTAATTTCTACGCG 59.212 43.478 3.53 3.53 0.00 6.01
4147 5018 1.664151 ACTGCTTAATTTCTACGCGCC 59.336 47.619 5.73 0.00 0.00 6.53
4155 5026 0.593618 TTTCTACGCGCCATTTTGCA 59.406 45.000 5.73 0.00 0.00 4.08
4259 5133 2.525629 TCGGTGCCCCTGAAGACA 60.526 61.111 0.00 0.00 0.00 3.41
4350 5224 0.027455 CGTCTGTTGTTTGCTCGCAA 59.973 50.000 0.00 0.00 0.00 4.85
4409 5283 2.076100 GACATTCAGGTCATCAACGCA 58.924 47.619 0.00 0.00 37.73 5.24
4518 5403 2.785357 TTTGAGGGGTTGTGGGAAAT 57.215 45.000 0.00 0.00 0.00 2.17
4519 5404 2.785357 TTGAGGGGTTGTGGGAAATT 57.215 45.000 0.00 0.00 0.00 1.82
4520 5405 2.785357 TGAGGGGTTGTGGGAAATTT 57.215 45.000 0.00 0.00 0.00 1.82
4521 5406 3.905493 TGAGGGGTTGTGGGAAATTTA 57.095 42.857 0.00 0.00 0.00 1.40
4522 5407 4.412060 TGAGGGGTTGTGGGAAATTTAT 57.588 40.909 0.00 0.00 0.00 1.40
4558 5444 7.045416 GGTTGTGGGAAAGACACTTTTTAAAT 58.955 34.615 0.00 0.00 39.52 1.40
4780 5667 7.852945 GCGATCTGAACTATTCGATTCATTTTT 59.147 33.333 0.00 0.00 34.43 1.94
4828 5715 6.708949 ACATACCCGGCAACTTGTATATAAAG 59.291 38.462 0.00 0.00 31.97 1.85
4971 5858 3.711704 ACGAGGGTAACATTCATGGATCT 59.288 43.478 0.00 0.00 39.74 2.75
5068 5955 2.022718 TGGCCCTTTGCAGGTAATTT 57.977 45.000 0.00 0.00 43.89 1.82
5122 6011 9.979578 AATATGTGCAAATTAAAGTGTTCTGAA 57.020 25.926 0.00 0.00 0.00 3.02
5149 6038 4.142038 TCTTCTTTGTTTAACAGGCCCTC 58.858 43.478 0.00 0.00 0.00 4.30
5207 6096 4.139038 GGACAACCAGTGCCTTACTTTAA 58.861 43.478 0.00 0.00 37.60 1.52
5208 6097 4.581409 GGACAACCAGTGCCTTACTTTAAA 59.419 41.667 0.00 0.00 37.60 1.52
5249 6138 1.807886 GACGCCGGTGAGTCATACT 59.192 57.895 24.59 0.00 40.59 2.12
5342 6231 2.282040 GTGACTTGCAGCTGGGCT 60.282 61.111 17.12 0.00 40.77 5.19
5344 6233 1.900016 TGACTTGCAGCTGGGCTTG 60.900 57.895 17.12 1.86 36.40 4.01
5345 6234 3.278592 GACTTGCAGCTGGGCTTGC 62.279 63.158 17.12 0.29 36.40 4.01
5374 6263 3.920231 ATGAGGAATTACTGCTGAGCA 57.080 42.857 7.05 7.05 36.92 4.26
5463 6352 2.754002 AGACTTACGCCTGAAGTACCTC 59.246 50.000 0.00 0.00 37.27 3.85
5523 6412 3.682858 GCACAAGTATCAGCGAAGGTAAA 59.317 43.478 0.00 0.00 35.08 2.01
5527 6416 6.742718 CACAAGTATCAGCGAAGGTAAAAATG 59.257 38.462 0.00 0.00 35.08 2.32
5621 6510 7.377398 TGGATGATTTGGTTGAACTTAACATG 58.623 34.615 0.00 0.00 32.22 3.21
5655 6544 1.127582 GCAGCAAACTCTCGTGTCATC 59.872 52.381 0.00 0.00 0.00 2.92
5694 6583 1.291877 GCGCAGAGAAGCTCGGAAAA 61.292 55.000 0.30 0.00 35.36 2.29
5702 6591 4.934602 AGAGAAGCTCGGAAAAATTCTCAG 59.065 41.667 13.84 0.00 45.30 3.35
5721 6610 1.644786 GGCTGCCTTGCGAACGTATT 61.645 55.000 12.43 0.00 0.00 1.89
5808 6697 2.498167 CTTGGAGAAAGTGTGTCCCAG 58.502 52.381 0.00 0.00 39.02 4.45
5880 6769 4.142513 GGAACTTCTTGCATGGATGAAGAC 60.143 45.833 34.45 27.41 39.17 3.01
5943 6832 9.577222 TCCAAATCATGCTAAAGATCATATTGA 57.423 29.630 0.00 0.00 0.00 2.57
6011 6900 4.348461 TGGTACCGGAGCCATTAATTCATA 59.652 41.667 9.46 0.00 0.00 2.15
6148 7037 2.289882 TGTCCATCAAGAGAAGGTGCAG 60.290 50.000 0.00 0.00 34.28 4.41
6350 7239 2.348998 CTGCTCCGAGGCCAACTT 59.651 61.111 5.01 0.00 0.00 2.66
6466 7358 1.340600 CGTACCCACATTCCACCCAAT 60.341 52.381 0.00 0.00 0.00 3.16
6614 7506 6.757897 TGTTCATGTTCTGTTCAAGTTTCT 57.242 33.333 0.00 0.00 0.00 2.52
6644 7536 7.830099 ATTGACTTGATGTCTTTTTCTCCTT 57.170 32.000 0.12 0.00 45.54 3.36
6645 7537 8.924511 ATTGACTTGATGTCTTTTTCTCCTTA 57.075 30.769 0.12 0.00 45.54 2.69
6695 7598 1.821332 GATGCTTTCTCCAGCGGGG 60.821 63.158 2.05 0.00 43.37 5.73
6742 7645 1.052617 TCCCTCAATCACGTGGAACA 58.947 50.000 17.00 0.00 35.74 3.18
6784 7687 8.966868 AGAACAGTAAGAAACCTTGAAAAATGA 58.033 29.630 0.00 0.00 0.00 2.57
6814 7718 8.570068 TCCACTTTTTAGTTTACTCTGTTTGT 57.430 30.769 0.00 0.00 0.00 2.83
6846 7750 0.589729 CAATTTCCGATTGCTCGCCG 60.590 55.000 0.00 0.00 43.66 6.46
6893 7805 1.056660 ACAGGGACAAGTCGTGGAAT 58.943 50.000 6.26 0.00 0.00 3.01
6931 7843 2.747460 GCAGCGGCAATCAGACCA 60.747 61.111 3.18 0.00 40.72 4.02
6944 7856 1.203087 TCAGACCAGGGTTACGGAGAA 60.203 52.381 0.00 0.00 0.00 2.87
7022 7934 2.094182 ACTAACATTGACGATGCGAGGT 60.094 45.455 2.31 0.00 39.47 3.85
7025 7937 2.268298 ACATTGACGATGCGAGGTAAC 58.732 47.619 2.31 0.00 39.47 2.50
7046 7958 3.160585 CACCAGGGTGCCTCTTCA 58.839 61.111 5.38 0.00 39.39 3.02
7047 7959 1.455849 CACCAGGGTGCCTCTTCAA 59.544 57.895 5.38 0.00 39.39 2.69
7048 7960 0.607489 CACCAGGGTGCCTCTTCAAG 60.607 60.000 5.38 0.00 39.39 3.02
7049 7961 1.676967 CCAGGGTGCCTCTTCAAGC 60.677 63.158 0.00 0.00 0.00 4.01
7050 7962 1.073722 CAGGGTGCCTCTTCAAGCA 59.926 57.895 0.00 0.00 36.44 3.91
7055 7967 2.719376 TGCCTCTTCAAGCACAACC 58.281 52.632 0.00 0.00 33.08 3.77
7056 7968 0.823356 TGCCTCTTCAAGCACAACCC 60.823 55.000 0.00 0.00 33.08 4.11
7119 8031 7.604545 TCAAACTTGATACCATCGAACAACATA 59.395 33.333 0.00 0.00 31.01 2.29
7174 8086 1.065410 AGAATGGGTGGGTGGTGACA 61.065 55.000 0.00 0.00 38.70 3.58
7237 8149 2.600729 CCAGCCCTCTTCACCTGCT 61.601 63.158 0.00 0.00 0.00 4.24
7259 8171 3.886044 GTGATCACACCTGTCGTCA 57.114 52.632 21.07 0.00 40.74 4.35
7267 8179 4.351938 CCTGTCGTCACGGCGGAA 62.352 66.667 13.53 0.00 40.60 4.30
7275 8187 3.803082 CACGGCGGAACAGCATGG 61.803 66.667 13.24 0.00 43.62 3.66
7280 8192 1.675641 GCGGAACAGCATGGGAACT 60.676 57.895 0.00 0.00 43.62 3.01
7327 8239 0.868406 CAGTGGCTCGTCAAAACTCC 59.132 55.000 0.00 0.00 0.00 3.85
7357 8269 2.108075 TGAACAATTCCCTGCTCTCCAA 59.892 45.455 0.00 0.00 0.00 3.53
7457 8375 1.130054 AGAAGCCTCTGGGTCAGCAA 61.130 55.000 0.00 0.00 30.76 3.91
7471 8389 0.179702 CAGCAATGCAGAGCCCTAGA 59.820 55.000 8.35 0.00 0.00 2.43
7479 8397 2.363925 GAGCCCTAGACCCGGTGT 60.364 66.667 0.00 0.00 0.00 4.16
7677 8595 2.156917 GGCCCAAAACAGGTACAGTAC 58.843 52.381 1.59 1.59 0.00 2.73
7733 8654 6.314648 GTCTCATGTTCATCTTGCACTATGAA 59.685 38.462 15.58 15.58 39.24 2.57
7836 8757 2.610859 TGACTTCCCTCCCCTGGC 60.611 66.667 0.00 0.00 0.00 4.85
7904 8825 3.558411 GCCGCTGACATGACGCTC 61.558 66.667 0.00 0.00 0.00 5.03
7905 8826 3.250323 CCGCTGACATGACGCTCG 61.250 66.667 0.00 0.00 0.00 5.03
7906 8827 3.906649 CGCTGACATGACGCTCGC 61.907 66.667 0.00 0.00 0.00 5.03
7907 8828 2.810887 GCTGACATGACGCTCGCA 60.811 61.111 0.00 0.00 0.00 5.10
7908 8829 2.796425 GCTGACATGACGCTCGCAG 61.796 63.158 0.00 0.00 0.00 5.18
7909 8830 1.445066 CTGACATGACGCTCGCAGT 60.445 57.895 0.00 0.00 0.00 4.40
7910 8831 1.409227 CTGACATGACGCTCGCAGTC 61.409 60.000 0.00 6.85 38.98 3.51
7911 8832 2.500442 GACATGACGCTCGCAGTCG 61.500 63.158 0.00 0.00 41.24 4.18
7912 8833 3.906649 CATGACGCTCGCAGTCGC 61.907 66.667 0.00 0.00 41.24 5.19
7996 8917 2.278245 TCATGACTTGGTTGAGGGGAT 58.722 47.619 0.00 0.00 0.00 3.85
7997 8918 2.025981 TCATGACTTGGTTGAGGGGATG 60.026 50.000 0.00 0.00 0.00 3.51
7998 8919 0.698238 TGACTTGGTTGAGGGGATGG 59.302 55.000 0.00 0.00 0.00 3.51
8052 8976 0.172352 CCGGCGGCATAAACAAACAT 59.828 50.000 15.42 0.00 0.00 2.71
8062 8986 5.637387 GGCATAAACAAACATTTTGGATCGT 59.363 36.000 3.82 0.00 0.00 3.73
8373 9302 3.890756 TGTGGAATGCTGATGTGTTCTTT 59.109 39.130 0.00 0.00 0.00 2.52
8426 9355 0.983467 TGCTCCTCTGCATTGTGGTA 59.017 50.000 0.00 0.00 38.12 3.25
8462 9391 4.588528 GCCTTATTTATGGATTTGCAGGGA 59.411 41.667 0.00 0.00 0.00 4.20
8486 9415 1.366435 AGTCCTCCTCCTATGGTGGTT 59.634 52.381 4.85 0.00 40.56 3.67
8581 9510 1.456331 GGGTGGAGGATGGCATTGG 60.456 63.158 0.00 0.00 0.00 3.16
8606 9535 4.308526 CCAAGTGCTGGCTGGTAG 57.691 61.111 0.00 0.00 38.76 3.18
8608 9537 0.254178 CCAAGTGCTGGCTGGTAGAT 59.746 55.000 0.00 0.00 38.76 1.98
8701 9681 1.043022 AAGGCTTTTGTGGCAGGAAG 58.957 50.000 0.00 0.00 34.73 3.46
8789 9778 1.632589 GGTCTTGGGGTGCTGAATTT 58.367 50.000 0.00 0.00 0.00 1.82
8817 9806 2.803285 AGAATATGAGCCTCCTGGGA 57.197 50.000 0.00 0.00 37.23 4.37
8819 9808 3.606972 AGAATATGAGCCTCCTGGGAAT 58.393 45.455 0.00 0.00 37.23 3.01
8867 9869 9.241317 CATTGATAACCAAATTATGTCTCAAGC 57.759 33.333 0.00 0.00 38.43 4.01
8868 9870 7.333528 TGATAACCAAATTATGTCTCAAGCC 57.666 36.000 0.00 0.00 33.37 4.35
8869 9871 6.889177 TGATAACCAAATTATGTCTCAAGCCA 59.111 34.615 0.00 0.00 33.37 4.75
8870 9872 7.395772 TGATAACCAAATTATGTCTCAAGCCAA 59.604 33.333 0.00 0.00 33.37 4.52
8871 9873 5.649782 ACCAAATTATGTCTCAAGCCAAG 57.350 39.130 0.00 0.00 0.00 3.61
8872 9874 5.324409 ACCAAATTATGTCTCAAGCCAAGA 58.676 37.500 0.00 0.00 0.00 3.02
8873 9875 5.774690 ACCAAATTATGTCTCAAGCCAAGAA 59.225 36.000 0.00 0.00 0.00 2.52
8874 9876 6.095377 CCAAATTATGTCTCAAGCCAAGAAC 58.905 40.000 0.00 0.00 0.00 3.01
8875 9877 6.071728 CCAAATTATGTCTCAAGCCAAGAACT 60.072 38.462 0.00 0.00 0.00 3.01
8876 9878 7.373493 CAAATTATGTCTCAAGCCAAGAACTT 58.627 34.615 0.00 0.00 0.00 2.66
8878 9880 3.845781 TGTCTCAAGCCAAGAACTTCT 57.154 42.857 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.476821 GGTGTGTTATTCGTATCCCCG 58.523 52.381 0.00 0.00 0.00 5.73
51 52 0.913205 TATGTGGGGCGGTGTGTTAT 59.087 50.000 0.00 0.00 0.00 1.89
61 62 2.660258 CTACGGGTGCTATGTGGGGC 62.660 65.000 0.00 0.00 0.00 5.80
74 75 3.887868 GCCCAAATGCGCTACGGG 61.888 66.667 9.73 14.44 40.11 5.28
90 91 1.746470 ATTTTGCCACCTACTACCGC 58.254 50.000 0.00 0.00 0.00 5.68
91 92 3.864243 TGTATTTTGCCACCTACTACCG 58.136 45.455 0.00 0.00 0.00 4.02
92 93 5.941647 TCTTTGTATTTTGCCACCTACTACC 59.058 40.000 0.00 0.00 0.00 3.18
93 94 7.443259 TTCTTTGTATTTTGCCACCTACTAC 57.557 36.000 0.00 0.00 0.00 2.73
94 95 7.940137 TCTTTCTTTGTATTTTGCCACCTACTA 59.060 33.333 0.00 0.00 0.00 1.82
95 96 6.775629 TCTTTCTTTGTATTTTGCCACCTACT 59.224 34.615 0.00 0.00 0.00 2.57
118 119 1.875009 CACACTATGCGCATGGATCT 58.125 50.000 36.30 14.75 0.00 2.75
119 120 0.236711 GCACACTATGCGCATGGATC 59.763 55.000 36.30 18.70 46.55 3.36
120 121 2.324215 GCACACTATGCGCATGGAT 58.676 52.632 36.30 22.10 46.55 3.41
121 122 3.812203 GCACACTATGCGCATGGA 58.188 55.556 36.30 16.45 46.55 3.41
220 223 0.179108 GAGATATACGGGGATGCGCC 60.179 60.000 4.18 0.00 0.00 6.53
229 232 2.707849 CCGCGGGGGAGATATACGG 61.708 68.421 20.10 0.00 38.47 4.02
243 246 0.240945 GGATTAATTGGATGGCCGCG 59.759 55.000 0.00 0.00 36.79 6.46
246 249 2.560105 GAGCAGGATTAATTGGATGGCC 59.440 50.000 0.00 0.00 0.00 5.36
304 327 0.472734 AGGGGCTGCCGATATCTCTT 60.473 55.000 13.40 0.00 0.00 2.85
327 350 0.881118 ATACAGCCAGTGCCAAAACG 59.119 50.000 0.00 0.00 38.69 3.60
342 365 0.986019 AATCAGGTGCCCGGGATACA 60.986 55.000 29.31 10.59 39.74 2.29
382 405 6.944862 AGTTATCTCCTGATGCCCATTTATTC 59.055 38.462 0.00 0.00 34.32 1.75
399 422 6.294675 CCCTGATGAGAGATGTGAGTTATCTC 60.295 46.154 6.84 6.84 46.95 2.75
478 514 0.312102 CACTGCGAGTGTGAGTGAGA 59.688 55.000 7.80 0.00 41.19 3.27
479 515 2.806577 CACTGCGAGTGTGAGTGAG 58.193 57.895 7.80 0.00 41.19 3.51
525 561 1.537814 TACACTGGGTACTGGTGCCG 61.538 60.000 11.25 0.00 36.09 5.69
526 562 2.368591 TACACTGGGTACTGGTGCC 58.631 57.895 11.25 0.00 35.21 5.01
598 634 4.554036 GATGGCTGGAGGGACGGC 62.554 72.222 0.00 0.00 42.02 5.68
600 636 2.187946 GTGATGGCTGGAGGGACG 59.812 66.667 0.00 0.00 0.00 4.79
601 637 2.592308 GGTGATGGCTGGAGGGAC 59.408 66.667 0.00 0.00 0.00 4.46
602 638 2.692368 GGGTGATGGCTGGAGGGA 60.692 66.667 0.00 0.00 0.00 4.20
603 639 3.016971 TGGGTGATGGCTGGAGGG 61.017 66.667 0.00 0.00 0.00 4.30
604 640 2.593978 CTGGGTGATGGCTGGAGG 59.406 66.667 0.00 0.00 0.00 4.30
605 641 2.124403 GCTGGGTGATGGCTGGAG 60.124 66.667 0.00 0.00 0.00 3.86
606 642 2.611800 AGCTGGGTGATGGCTGGA 60.612 61.111 0.00 0.00 34.82 3.86
644 680 1.455959 CGAGGAGGAGGATTCGGGT 60.456 63.158 0.00 0.00 0.00 5.28
697 745 1.077429 GATGGTGGGGCTGGAGTTC 60.077 63.158 0.00 0.00 0.00 3.01
748 796 3.646976 CGCCGGATCTCGCTCGTA 61.647 66.667 5.05 0.00 37.59 3.43
1186 1239 4.197498 CCCGTAGCCGTACCCGTG 62.197 72.222 0.00 0.00 0.00 4.94
1221 1274 2.353610 CCCGTAGCCGTACCCTTGT 61.354 63.158 0.00 0.00 0.00 3.16
1224 1277 4.847367 CCCCCGTAGCCGTACCCT 62.847 72.222 0.00 0.00 0.00 4.34
1672 1788 4.939368 TTTCGCGTGGGGGTGTGG 62.939 66.667 5.77 0.00 0.00 4.17
1673 1789 3.656045 GTTTCGCGTGGGGGTGTG 61.656 66.667 5.77 0.00 0.00 3.82
1674 1790 4.941309 GGTTTCGCGTGGGGGTGT 62.941 66.667 5.77 0.00 0.00 4.16
1768 2107 8.684386 ACCTTTTTGGGTTTGTTATTAATTGG 57.316 30.769 0.00 0.00 41.11 3.16
1776 2117 4.406326 GGGAAGACCTTTTTGGGTTTGTTA 59.594 41.667 0.00 0.00 40.06 2.41
1777 2118 3.199071 GGGAAGACCTTTTTGGGTTTGTT 59.801 43.478 0.00 0.00 40.06 2.83
1779 2120 2.223947 CGGGAAGACCTTTTTGGGTTTG 60.224 50.000 0.00 0.00 40.06 2.93
1780 2121 2.036387 CGGGAAGACCTTTTTGGGTTT 58.964 47.619 0.00 0.00 40.06 3.27
1781 2122 1.063492 ACGGGAAGACCTTTTTGGGTT 60.063 47.619 0.00 0.00 40.06 4.11
1782 2123 0.554305 ACGGGAAGACCTTTTTGGGT 59.446 50.000 0.00 0.00 43.07 4.51
1783 2124 1.699730 AACGGGAAGACCTTTTTGGG 58.300 50.000 0.00 0.00 41.11 4.12
1911 2262 3.066190 CACCTACGAGGGCGGACA 61.066 66.667 0.00 0.00 40.58 4.02
2124 2493 9.537852 AGGTCCGTACAACATTATTATCCTATA 57.462 33.333 0.00 0.00 0.00 1.31
2125 2494 8.431910 AGGTCCGTACAACATTATTATCCTAT 57.568 34.615 0.00 0.00 0.00 2.57
2143 2514 3.452264 GGTATGGGTAACTTTAGGTCCGT 59.548 47.826 0.00 0.00 0.00 4.69
2160 2532 8.873830 CGACTTTATATGCTTAATCCAGGTATG 58.126 37.037 0.00 0.00 0.00 2.39
2198 2570 9.500701 TTTTATGGCCCCTTTCTTTTAATAGAT 57.499 29.630 0.00 0.00 0.00 1.98
2199 2571 8.903059 TTTTATGGCCCCTTTCTTTTAATAGA 57.097 30.769 0.00 0.00 0.00 1.98
2239 2615 7.022055 TGTTTTGTAGTGTAACAGTGAATGG 57.978 36.000 0.00 0.00 41.43 3.16
2275 2651 6.514947 CAAAATTCAGATCAAGTTGGAACCA 58.485 36.000 2.34 0.00 0.00 3.67
2288 2664 4.794278 TCACATGCTGCAAAATTCAGAT 57.206 36.364 6.36 0.00 33.54 2.90
2561 2979 9.052365 AGGCCCCTTTATTTTATTTTGAATGTA 57.948 29.630 0.00 0.00 0.00 2.29
2564 2982 9.821240 AAAAGGCCCCTTTATTTTATTTTGAAT 57.179 25.926 12.39 0.00 44.50 2.57
2603 3021 6.174720 ACAACTCTTGAAGTAGTCATCCAA 57.825 37.500 0.00 0.00 37.17 3.53
2607 3025 9.429359 CATTAGAACAACTCTTGAAGTAGTCAT 57.571 33.333 0.00 0.00 37.17 3.06
2609 3027 8.088981 TCCATTAGAACAACTCTTGAAGTAGTC 58.911 37.037 0.00 0.00 37.17 2.59
2621 3039 7.624549 TGCTCTTCTTATCCATTAGAACAACT 58.375 34.615 0.00 0.00 0.00 3.16
2639 3057 9.113838 TGAAAGAAATATATGTTCCTGCTCTTC 57.886 33.333 0.00 0.00 0.00 2.87
2701 3120 5.534654 CCATGTTGTCTTAAGAAAAGTCCCA 59.465 40.000 8.41 3.87 0.00 4.37
2718 3137 7.496529 ACGATTTAAGTATCCATCCATGTTG 57.503 36.000 0.00 0.00 0.00 3.33
2813 3234 9.719355 GAAAGCCCCTTTCTTTTATTTTGAATA 57.281 29.630 9.76 0.00 44.33 1.75
2816 3237 6.100424 TGGAAAGCCCCTTTCTTTTATTTTGA 59.900 34.615 15.02 0.00 46.20 2.69
2818 3239 6.508030 TGGAAAGCCCCTTTCTTTTATTTT 57.492 33.333 15.02 0.00 46.20 1.82
2819 3240 6.702449 ATGGAAAGCCCCTTTCTTTTATTT 57.298 33.333 15.02 0.00 46.20 1.40
2820 3241 7.678171 TCTTATGGAAAGCCCCTTTCTTTTATT 59.322 33.333 15.02 1.19 46.20 1.40
2822 3243 6.557568 TCTTATGGAAAGCCCCTTTCTTTTA 58.442 36.000 15.02 4.92 46.20 1.52
2823 3244 5.402630 TCTTATGGAAAGCCCCTTTCTTTT 58.597 37.500 15.02 5.65 46.20 2.27
2824 3245 5.010708 TCTTATGGAAAGCCCCTTTCTTT 57.989 39.130 15.02 7.53 46.20 2.52
2826 3247 4.675063 TTCTTATGGAAAGCCCCTTTCT 57.325 40.909 15.02 2.35 46.20 2.52
2827 3248 5.479306 GTTTTCTTATGGAAAGCCCCTTTC 58.521 41.667 8.76 8.76 46.24 2.62
2828 3249 4.021456 CGTTTTCTTATGGAAAGCCCCTTT 60.021 41.667 0.00 0.00 43.68 3.11
2831 3252 2.823747 ACGTTTTCTTATGGAAAGCCCC 59.176 45.455 0.00 0.00 43.68 5.80
2832 3253 3.366985 CCACGTTTTCTTATGGAAAGCCC 60.367 47.826 0.00 0.00 43.68 5.19
2833 3254 3.504520 TCCACGTTTTCTTATGGAAAGCC 59.495 43.478 0.00 0.00 43.68 4.35
2834 3255 4.759516 TCCACGTTTTCTTATGGAAAGC 57.240 40.909 0.00 0.00 43.68 3.51
2835 3256 6.494893 TCATCCACGTTTTCTTATGGAAAG 57.505 37.500 0.00 0.00 44.25 2.62
2836 3257 6.263392 TGTTCATCCACGTTTTCTTATGGAAA 59.737 34.615 0.00 0.00 44.25 3.13
2837 3258 5.765677 TGTTCATCCACGTTTTCTTATGGAA 59.234 36.000 0.00 0.00 44.25 3.53
2838 3259 5.180492 GTGTTCATCCACGTTTTCTTATGGA 59.820 40.000 0.00 0.00 45.12 3.41
2843 3264 4.638421 TGAAGTGTTCATCCACGTTTTCTT 59.362 37.500 0.00 0.00 40.33 2.52
2844 3265 4.196193 TGAAGTGTTCATCCACGTTTTCT 58.804 39.130 0.00 0.00 40.33 2.52
2845 3266 4.545823 TGAAGTGTTCATCCACGTTTTC 57.454 40.909 0.00 0.00 40.33 2.29
2846 3267 4.974368 TTGAAGTGTTCATCCACGTTTT 57.026 36.364 0.00 0.00 39.84 2.43
2848 3269 4.821805 AGATTTGAAGTGTTCATCCACGTT 59.178 37.500 0.00 0.00 39.84 3.99
2849 3270 4.389374 AGATTTGAAGTGTTCATCCACGT 58.611 39.130 0.00 0.00 39.84 4.49
2851 3272 6.317789 TCAAGATTTGAAGTGTTCATCCAC 57.682 37.500 0.00 0.00 39.84 4.02
2852 3273 8.634335 TTATCAAGATTTGAAGTGTTCATCCA 57.366 30.769 0.00 0.00 43.95 3.41
2876 3297 8.046708 GGCCCAAAAATCTATTCCTGTTTTATT 58.953 33.333 0.00 0.00 0.00 1.40
2877 3298 7.402941 AGGCCCAAAAATCTATTCCTGTTTTAT 59.597 33.333 0.00 0.00 0.00 1.40
2878 3299 6.728632 AGGCCCAAAAATCTATTCCTGTTTTA 59.271 34.615 0.00 0.00 0.00 1.52
2879 3300 5.547666 AGGCCCAAAAATCTATTCCTGTTTT 59.452 36.000 0.00 0.00 0.00 2.43
2881 3302 4.687976 AGGCCCAAAAATCTATTCCTGTT 58.312 39.130 0.00 0.00 0.00 3.16
2882 3303 4.337264 AGGCCCAAAAATCTATTCCTGT 57.663 40.909 0.00 0.00 0.00 4.00
2883 3304 4.711355 TGAAGGCCCAAAAATCTATTCCTG 59.289 41.667 0.00 0.00 0.00 3.86
2884 3305 4.946646 TGAAGGCCCAAAAATCTATTCCT 58.053 39.130 0.00 0.00 0.00 3.36
2885 3306 5.876651 ATGAAGGCCCAAAAATCTATTCC 57.123 39.130 0.00 0.00 0.00 3.01
2887 3308 7.015584 GGACATATGAAGGCCCAAAAATCTATT 59.984 37.037 10.38 0.00 0.00 1.73
2888 3309 6.494835 GGACATATGAAGGCCCAAAAATCTAT 59.505 38.462 10.38 0.00 0.00 1.98
2890 3311 4.651045 GGACATATGAAGGCCCAAAAATCT 59.349 41.667 10.38 0.00 0.00 2.40
2891 3312 4.405358 TGGACATATGAAGGCCCAAAAATC 59.595 41.667 10.38 0.00 0.00 2.17
2892 3313 4.162131 GTGGACATATGAAGGCCCAAAAAT 59.838 41.667 10.38 0.00 0.00 1.82
3042 3578 2.030562 CGAGCTTTGGGTGTCGGT 59.969 61.111 0.00 0.00 0.00 4.69
3047 3583 0.250295 TCAGGTTCGAGCTTTGGGTG 60.250 55.000 0.00 0.00 0.00 4.61
3059 3595 2.430694 AGTGCTTGGGTTTTTCAGGTTC 59.569 45.455 0.00 0.00 0.00 3.62
3064 3600 4.211125 TGATGTAGTGCTTGGGTTTTTCA 58.789 39.130 0.00 0.00 0.00 2.69
3188 4015 2.531685 CAGGGTCAGGGTTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
3222 4049 3.383185 GTGGTCTTGTTGTGGGAAATTGA 59.617 43.478 0.00 0.00 0.00 2.57
3241 4068 1.594021 TGCGTGTGCTACTGTGTGG 60.594 57.895 0.00 0.00 43.34 4.17
3265 4092 3.391296 GTGTATGGACATATGGGACACCT 59.609 47.826 7.80 0.00 38.83 4.00
3285 4112 0.511221 GGACAATGTCCGAACGTGTG 59.489 55.000 17.46 0.00 43.14 3.82
3305 4132 1.244019 GGTTCAAATCAGCCACGCCT 61.244 55.000 0.00 0.00 0.00 5.52
3307 4134 1.212751 GGGTTCAAATCAGCCACGC 59.787 57.895 0.00 0.00 0.00 5.34
3312 4139 3.996363 GACAAATTGGGGTTCAAATCAGC 59.004 43.478 0.00 0.00 39.05 4.26
3325 4152 2.801679 GTTGTGTGCCATGACAAATTGG 59.198 45.455 0.00 0.00 33.96 3.16
3335 4163 2.601367 GGCCTGGTTGTGTGCCAT 60.601 61.111 0.00 0.00 43.46 4.40
3336 4164 4.912395 GGGCCTGGTTGTGTGCCA 62.912 66.667 0.84 0.00 45.83 4.92
3350 4178 0.613260 GGGAAGACATTTTTGGGGGC 59.387 55.000 0.00 0.00 0.00 5.80
3557 4387 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3558 4388 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
3559 4389 0.319986 TCGTGTGTGTGTGTGTGTGT 60.320 50.000 0.00 0.00 0.00 3.72
3560 4390 0.369931 CTCGTGTGTGTGTGTGTGTG 59.630 55.000 0.00 0.00 0.00 3.82
3561 4391 1.358725 GCTCGTGTGTGTGTGTGTGT 61.359 55.000 0.00 0.00 0.00 3.72
3562 4392 1.348250 GCTCGTGTGTGTGTGTGTG 59.652 57.895 0.00 0.00 0.00 3.82
3563 4393 0.461870 ATGCTCGTGTGTGTGTGTGT 60.462 50.000 0.00 0.00 0.00 3.72
3564 4394 0.041926 CATGCTCGTGTGTGTGTGTG 60.042 55.000 0.00 0.00 0.00 3.82
3565 4395 0.179086 TCATGCTCGTGTGTGTGTGT 60.179 50.000 0.00 0.00 0.00 3.72
3566 4396 0.509929 CTCATGCTCGTGTGTGTGTG 59.490 55.000 0.00 0.00 0.00 3.82
3567 4397 1.224069 GCTCATGCTCGTGTGTGTGT 61.224 55.000 0.00 0.00 36.03 3.72
3568 4398 1.223417 TGCTCATGCTCGTGTGTGTG 61.223 55.000 0.00 0.00 40.48 3.82
3569 4399 0.532640 TTGCTCATGCTCGTGTGTGT 60.533 50.000 0.00 0.00 40.48 3.72
3570 4400 0.165295 CTTGCTCATGCTCGTGTGTG 59.835 55.000 0.00 0.00 40.48 3.82
3571 4401 1.572085 GCTTGCTCATGCTCGTGTGT 61.572 55.000 0.00 0.00 40.48 3.72
3572 4402 1.134075 GCTTGCTCATGCTCGTGTG 59.866 57.895 0.00 0.00 40.48 3.82
3573 4403 1.301953 TGCTTGCTCATGCTCGTGT 60.302 52.632 8.80 0.00 40.48 4.49
3574 4404 1.134075 GTGCTTGCTCATGCTCGTG 59.866 57.895 8.80 0.00 40.48 4.35
3692 4545 3.911661 GTGATGAGCACTGAAGCTTTT 57.088 42.857 0.00 0.00 46.75 2.27
3704 4565 0.461961 AGGGACGCTAAGTGATGAGC 59.538 55.000 0.00 0.00 35.24 4.26
3717 4578 2.042259 GGGCCGGTAAAAAGGGACG 61.042 63.158 1.90 0.00 0.00 4.79
3734 4595 5.585390 ACGTCGTAATCAGTACTAAATGGG 58.415 41.667 0.00 0.00 0.00 4.00
3736 4597 7.730067 TCAACGTCGTAATCAGTACTAAATG 57.270 36.000 0.00 0.00 0.00 2.32
3738 4599 7.271868 CACATCAACGTCGTAATCAGTACTAAA 59.728 37.037 0.00 0.00 0.00 1.85
3833 4704 3.423154 GTGCAGCTGTACGTGGGC 61.423 66.667 19.38 0.00 0.00 5.36
3914 4785 3.267597 ATTTGAGTGCAACGGCGGC 62.268 57.895 13.24 6.51 45.86 6.53
3915 4786 1.442520 CATTTGAGTGCAACGGCGG 60.443 57.895 13.24 0.00 45.86 6.13
3955 4826 1.648116 TACAGGTACACCCAAGTCCC 58.352 55.000 0.00 0.00 36.42 4.46
3965 4836 9.737427 CACATTTTTGTGTTAAATACAGGTACA 57.263 29.630 0.00 0.00 37.45 2.90
4010 4881 8.145316 AGTACAACGACTAGCACATTTAAAAA 57.855 30.769 0.00 0.00 0.00 1.94
4012 4883 6.924612 TGAGTACAACGACTAGCACATTTAAA 59.075 34.615 0.00 0.00 0.00 1.52
4014 4885 6.016213 TGAGTACAACGACTAGCACATTTA 57.984 37.500 0.00 0.00 0.00 1.40
4015 4886 4.878439 TGAGTACAACGACTAGCACATTT 58.122 39.130 0.00 0.00 0.00 2.32
4016 4887 4.514781 TGAGTACAACGACTAGCACATT 57.485 40.909 0.00 0.00 0.00 2.71
4017 4888 4.514781 TTGAGTACAACGACTAGCACAT 57.485 40.909 0.00 0.00 0.00 3.21
4019 4890 4.434330 GCATTTGAGTACAACGACTAGCAC 60.434 45.833 0.00 0.00 35.63 4.40
4020 4891 3.678072 GCATTTGAGTACAACGACTAGCA 59.322 43.478 0.00 0.00 35.63 3.49
4021 4892 3.062234 GGCATTTGAGTACAACGACTAGC 59.938 47.826 0.00 0.00 35.63 3.42
4022 4893 3.303495 CGGCATTTGAGTACAACGACTAG 59.697 47.826 0.00 0.00 35.63 2.57
4024 4895 2.066262 CGGCATTTGAGTACAACGACT 58.934 47.619 0.00 0.00 35.63 4.18
4026 4897 0.793861 GCGGCATTTGAGTACAACGA 59.206 50.000 0.00 0.00 35.63 3.85
4027 4898 0.179200 GGCGGCATTTGAGTACAACG 60.179 55.000 3.07 0.00 35.63 4.10
4028 4899 0.179200 CGGCGGCATTTGAGTACAAC 60.179 55.000 10.53 0.00 35.63 3.32
4029 4900 0.604243 ACGGCGGCATTTGAGTACAA 60.604 50.000 13.24 0.00 0.00 2.41
4030 4901 0.604243 AACGGCGGCATTTGAGTACA 60.604 50.000 13.24 0.00 0.00 2.90
4033 4904 1.452145 AACAACGGCGGCATTTGAGT 61.452 50.000 22.49 10.14 0.00 3.41
4034 4905 1.003262 CAACAACGGCGGCATTTGAG 61.003 55.000 22.49 12.74 0.00 3.02
4035 4906 1.007964 CAACAACGGCGGCATTTGA 60.008 52.632 22.49 0.00 0.00 2.69
4036 4907 2.656807 GCAACAACGGCGGCATTTG 61.657 57.895 13.24 16.18 0.00 2.32
4037 4908 2.355718 GCAACAACGGCGGCATTT 60.356 55.556 13.24 0.00 0.00 2.32
4039 4910 4.341502 GTGCAACAACGGCGGCAT 62.342 61.111 13.24 0.00 38.68 4.40
4041 4912 4.683334 GAGTGCAACAACGGCGGC 62.683 66.667 13.24 4.77 41.43 6.53
4042 4913 2.329678 TTTGAGTGCAACAACGGCGG 62.330 55.000 13.24 0.00 41.43 6.13
4043 4914 0.317770 ATTTGAGTGCAACAACGGCG 60.318 50.000 4.80 4.80 41.43 6.46
4044 4915 1.130955 CATTTGAGTGCAACAACGGC 58.869 50.000 7.02 0.00 41.43 5.68
4054 4925 0.533491 CATGGGGGCACATTTGAGTG 59.467 55.000 0.00 0.00 42.37 3.51
4055 4926 1.259840 GCATGGGGGCACATTTGAGT 61.260 55.000 0.00 0.00 0.00 3.41
4056 4927 1.518774 GCATGGGGGCACATTTGAG 59.481 57.895 0.00 0.00 0.00 3.02
4057 4928 1.988956 GGCATGGGGGCACATTTGA 60.989 57.895 0.00 0.00 42.77 2.69
4058 4929 2.585698 GGCATGGGGGCACATTTG 59.414 61.111 0.00 0.00 42.77 2.32
4059 4930 3.076278 CGGCATGGGGGCACATTT 61.076 61.111 0.00 0.00 43.60 2.32
4070 4941 4.465512 GAGTGCAACGGCGGCATG 62.466 66.667 13.24 8.68 45.86 4.06
4073 4944 3.267597 ATTTGAGTGCAACGGCGGC 62.268 57.895 13.24 6.51 45.86 6.53
4074 4945 1.442520 CATTTGAGTGCAACGGCGG 60.443 57.895 13.24 0.00 45.86 6.13
4075 4946 0.998226 CACATTTGAGTGCAACGGCG 60.998 55.000 4.80 4.80 45.86 6.46
4076 4947 2.800096 CACATTTGAGTGCAACGGC 58.200 52.632 0.00 0.00 45.86 5.68
4083 4954 5.679734 AACAAGACTAGCACATTTGAGTG 57.320 39.130 0.00 0.00 42.37 3.51
4084 4955 7.801716 TTTAACAAGACTAGCACATTTGAGT 57.198 32.000 0.00 0.00 0.00 3.41
4085 4956 9.683069 ATTTTTAACAAGACTAGCACATTTGAG 57.317 29.630 0.00 0.00 0.00 3.02
4088 4959 9.626045 GCTATTTTTAACAAGACTAGCACATTT 57.374 29.630 0.00 0.00 32.41 2.32
4089 4960 9.014297 AGCTATTTTTAACAAGACTAGCACATT 57.986 29.630 7.74 0.00 34.10 2.71
4090 4961 8.567285 AGCTATTTTTAACAAGACTAGCACAT 57.433 30.769 7.74 0.00 34.10 3.21
4091 4962 7.979444 AGCTATTTTTAACAAGACTAGCACA 57.021 32.000 7.74 0.00 34.10 4.57
4092 4963 8.108782 CGTAGCTATTTTTAACAAGACTAGCAC 58.891 37.037 0.00 4.45 34.10 4.40
4093 4964 8.030692 TCGTAGCTATTTTTAACAAGACTAGCA 58.969 33.333 0.00 0.00 34.10 3.49
4094 4965 8.319585 GTCGTAGCTATTTTTAACAAGACTAGC 58.680 37.037 0.00 0.00 0.00 3.42
4095 4966 9.350357 TGTCGTAGCTATTTTTAACAAGACTAG 57.650 33.333 0.00 0.00 0.00 2.57
4129 5000 1.728068 TGGCGCGTAGAAATTAAGCA 58.272 45.000 8.43 0.00 0.00 3.91
4145 5016 6.677781 TCTAGTAGTGTATTGCAAAATGGC 57.322 37.500 1.71 0.00 0.00 4.40
4147 5018 9.494479 CACATTCTAGTAGTGTATTGCAAAATG 57.506 33.333 1.71 6.86 0.00 2.32
4155 5026 7.036220 GTGTCAGCACATTCTAGTAGTGTATT 58.964 38.462 11.52 0.00 44.64 1.89
4217 5091 1.172180 ACGGGAACACCTGCATTGTG 61.172 55.000 13.34 13.34 39.63 3.33
4250 5124 0.753262 CGGGGAGGTATGTCTTCAGG 59.247 60.000 0.00 0.00 0.00 3.86
4259 5133 1.352083 CATCACCATCGGGGAGGTAT 58.648 55.000 0.84 0.00 39.13 2.73
4350 5224 2.049063 GTCGCTGCTCTGTTCGGT 60.049 61.111 0.00 0.00 0.00 4.69
4409 5283 4.887655 AGTTCAAACGGAGAAATCACCTTT 59.112 37.500 0.00 0.00 0.00 3.11
4417 5291 5.358442 TGATTTGGAAGTTCAAACGGAGAAA 59.642 36.000 5.01 0.00 39.13 2.52
4477 5362 2.035783 GTCTTTCCCACAGCCCCC 59.964 66.667 0.00 0.00 0.00 5.40
4482 5367 4.202050 CCTCAAAAAGTGTCTTTCCCACAG 60.202 45.833 0.00 0.00 35.24 3.66
4518 5403 4.591072 CCCACAACCCCTCAAAAAGATAAA 59.409 41.667 0.00 0.00 0.00 1.40
4519 5404 4.140900 TCCCACAACCCCTCAAAAAGATAA 60.141 41.667 0.00 0.00 0.00 1.75
4520 5405 3.399644 TCCCACAACCCCTCAAAAAGATA 59.600 43.478 0.00 0.00 0.00 1.98
4521 5406 2.178984 TCCCACAACCCCTCAAAAAGAT 59.821 45.455 0.00 0.00 0.00 2.40
4522 5407 1.571457 TCCCACAACCCCTCAAAAAGA 59.429 47.619 0.00 0.00 0.00 2.52
4617 5504 8.819974 CACAAAAACAATGACAAAAGCTTAGAT 58.180 29.630 0.00 0.00 0.00 1.98
4627 5514 5.394663 CCTGGGTACACAAAAACAATGACAA 60.395 40.000 0.00 0.00 0.00 3.18
4797 5684 5.442391 ACAAGTTGCCGGGTATGTATTTAT 58.558 37.500 2.18 0.00 0.00 1.40
4798 5685 4.846040 ACAAGTTGCCGGGTATGTATTTA 58.154 39.130 2.18 0.00 0.00 1.40
4828 5715 7.274603 AGGGATATCTAAGTTACTCGTGTTC 57.725 40.000 2.05 0.00 0.00 3.18
4908 5795 0.942962 GGATGATGCTCCGCTTGAAG 59.057 55.000 0.00 0.00 0.00 3.02
4962 5849 5.449297 TCAACCAATGGTTAGATCCATGA 57.551 39.130 18.29 6.20 45.01 3.07
4971 5858 5.155278 ACGTAGACATCAACCAATGGTTA 57.845 39.130 18.29 7.03 45.01 2.85
5068 5955 5.617252 AGTTACTTGGATTGTTTTCCGAGA 58.383 37.500 13.47 0.00 46.50 4.04
5118 6005 9.831737 CCTGTTAAACAAAGAAGATACATTCAG 57.168 33.333 0.00 0.00 0.00 3.02
5122 6011 6.152831 GGGCCTGTTAAACAAAGAAGATACAT 59.847 38.462 0.84 0.00 0.00 2.29
5149 6038 6.936222 CTGTAGTACAGCAGAAACTTGTAG 57.064 41.667 17.11 0.00 39.62 2.74
5207 6096 3.350163 CAGGGGGACAGGGCCATT 61.350 66.667 6.18 0.00 0.00 3.16
5234 6123 2.688958 AGACTAAGTATGACTCACCGGC 59.311 50.000 0.00 0.00 0.00 6.13
5264 6153 7.970061 CAGGTGATTCACATAACATAACAAAGG 59.030 37.037 18.09 0.00 35.86 3.11
5344 6233 0.174162 AATTCCTCATTTGCGGCAGC 59.826 50.000 1.67 0.31 45.41 5.25
5345 6234 2.684881 AGTAATTCCTCATTTGCGGCAG 59.315 45.455 1.67 0.00 0.00 4.85
5350 6239 4.732938 GCTCAGCAGTAATTCCTCATTTGC 60.733 45.833 0.00 0.00 31.17 3.68
5419 6308 2.131183 GTCACGCCTATCAGAATCTGC 58.869 52.381 5.18 0.00 0.00 4.26
5423 6312 1.414181 CTGGGTCACGCCTATCAGAAT 59.586 52.381 0.00 0.00 37.43 2.40
5463 6352 3.243839 CCTTCAAGGGGTCAACAATGTTG 60.244 47.826 19.23 19.23 0.00 3.33
5523 6412 7.670605 AAATGATGGATCATCTTGGTCATTT 57.329 32.000 2.59 11.13 46.22 2.32
5527 6416 6.461110 ACAAAATGATGGATCATCTTGGTC 57.539 37.500 16.42 0.00 45.13 4.02
5553 6442 8.812972 GTGTGTACCCCATAATCAAGATATAGA 58.187 37.037 0.00 0.00 0.00 1.98
5554 6443 8.816894 AGTGTGTACCCCATAATCAAGATATAG 58.183 37.037 0.00 0.00 0.00 1.31
5567 6456 5.061721 AGAAAGAAAAGTGTGTACCCCAT 57.938 39.130 0.00 0.00 0.00 4.00
5621 6510 9.226345 GAGAGTTTGCTGCATAAAATTATGTAC 57.774 33.333 1.84 6.15 41.92 2.90
5694 6583 1.310933 CGCAAGGCAGCCTGAGAATT 61.311 55.000 17.05 0.00 32.13 2.17
5702 6591 1.644786 AATACGTTCGCAAGGCAGCC 61.645 55.000 1.84 1.84 38.47 4.85
5721 6610 3.678056 AACACATAGACTTCTTCCGCA 57.322 42.857 0.00 0.00 0.00 5.69
5880 6769 5.750547 TGAGATCCGATGAATTCTCTTTTCG 59.249 40.000 7.05 7.48 36.43 3.46
5941 6830 2.053244 ACCCCAATTTTGTGCCAATCA 58.947 42.857 0.00 0.00 0.00 2.57
5942 6831 2.857186 ACCCCAATTTTGTGCCAATC 57.143 45.000 0.00 0.00 0.00 2.67
5943 6832 4.925390 AATACCCCAATTTTGTGCCAAT 57.075 36.364 0.00 0.00 0.00 3.16
5957 6846 8.082242 GCAATAGTAATCATGTCAAAATACCCC 58.918 37.037 0.00 0.00 0.00 4.95
6104 6993 1.946081 GTTCCGGTTTGACCCGTTAAA 59.054 47.619 0.00 0.00 46.66 1.52
6148 7037 2.391389 CGGCGTGAAAGGAGGAAGC 61.391 63.158 0.00 0.00 0.00 3.86
6336 7225 1.372087 GCATGAAGTTGGCCTCGGAG 61.372 60.000 3.32 0.00 0.00 4.63
6466 7358 0.836400 GGGGATAGGCCGAGAATCCA 60.836 60.000 22.75 0.00 40.87 3.41
6627 7519 4.094887 GCGCATAAGGAGAAAAAGACATCA 59.905 41.667 0.30 0.00 0.00 3.07
6637 7529 3.447586 AGTAGTTCTGCGCATAAGGAGAA 59.552 43.478 12.24 7.03 44.40 2.87
6638 7530 3.024547 AGTAGTTCTGCGCATAAGGAGA 58.975 45.455 12.24 0.00 36.80 3.71
6639 7531 3.376540 GAGTAGTTCTGCGCATAAGGAG 58.623 50.000 12.24 0.00 0.00 3.69
6640 7532 2.223502 CGAGTAGTTCTGCGCATAAGGA 60.224 50.000 12.24 0.46 0.00 3.36
6641 7533 2.120232 CGAGTAGTTCTGCGCATAAGG 58.880 52.381 12.24 0.00 0.00 2.69
6642 7534 3.066369 TCGAGTAGTTCTGCGCATAAG 57.934 47.619 12.24 0.00 0.00 1.73
6643 7535 3.372060 CATCGAGTAGTTCTGCGCATAA 58.628 45.455 12.24 7.52 0.00 1.90
6644 7536 2.858646 GCATCGAGTAGTTCTGCGCATA 60.859 50.000 12.24 0.00 0.00 3.14
6645 7537 1.845266 CATCGAGTAGTTCTGCGCAT 58.155 50.000 12.24 0.00 0.00 4.73
6695 7598 3.750130 CACATAGCTGGATAGAATGCCAC 59.250 47.826 0.00 0.00 0.00 5.01
6742 7645 1.212935 GTTCTGGGGATGTATGTGCCT 59.787 52.381 0.00 0.00 0.00 4.75
6814 7718 9.042008 GCAATCGGAAATTGAATTAGTCTACTA 57.958 33.333 2.07 0.00 0.00 1.82
6846 7750 7.041576 CCAACCCTACAAGAGTAAAGTGTAAAC 60.042 40.741 0.00 0.00 0.00 2.01
6893 7805 2.175499 CCTTTGCATCCTTCCCCTATCA 59.825 50.000 0.00 0.00 0.00 2.15
6931 7843 0.708802 TCTCCCTTCTCCGTAACCCT 59.291 55.000 0.00 0.00 0.00 4.34
6944 7856 2.670148 GGCAACATCCGGTCTCCCT 61.670 63.158 0.00 0.00 0.00 4.20
7004 7916 2.665649 TACCTCGCATCGTCAATGTT 57.334 45.000 0.00 0.00 37.71 2.71
7009 7921 1.252215 TGGGTTACCTCGCATCGTCA 61.252 55.000 0.00 0.00 37.76 4.35
7042 7954 1.691196 TGAAGGGGTTGTGCTTGAAG 58.309 50.000 0.00 0.00 0.00 3.02
7043 7955 2.031120 CTTGAAGGGGTTGTGCTTGAA 58.969 47.619 0.00 0.00 0.00 2.69
7044 7956 1.691196 CTTGAAGGGGTTGTGCTTGA 58.309 50.000 0.00 0.00 0.00 3.02
7045 7957 0.032540 GCTTGAAGGGGTTGTGCTTG 59.967 55.000 0.00 0.00 0.00 4.01
7046 7958 0.396974 TGCTTGAAGGGGTTGTGCTT 60.397 50.000 0.00 0.00 0.00 3.91
7047 7959 0.396974 TTGCTTGAAGGGGTTGTGCT 60.397 50.000 0.00 0.00 0.00 4.40
7048 7960 0.249447 GTTGCTTGAAGGGGTTGTGC 60.249 55.000 0.00 0.00 0.00 4.57
7049 7961 1.110442 TGTTGCTTGAAGGGGTTGTG 58.890 50.000 0.00 0.00 0.00 3.33
7050 7962 1.859302 TTGTTGCTTGAAGGGGTTGT 58.141 45.000 0.00 0.00 0.00 3.32
7051 7963 2.364970 TCATTGTTGCTTGAAGGGGTTG 59.635 45.455 0.00 0.00 0.00 3.77
7052 7964 2.629617 CTCATTGTTGCTTGAAGGGGTT 59.370 45.455 0.00 0.00 0.00 4.11
7053 7965 2.242043 CTCATTGTTGCTTGAAGGGGT 58.758 47.619 0.00 0.00 0.00 4.95
7054 7966 1.067354 GCTCATTGTTGCTTGAAGGGG 60.067 52.381 0.00 0.00 0.00 4.79
7055 7967 1.614903 TGCTCATTGTTGCTTGAAGGG 59.385 47.619 0.00 0.00 0.00 3.95
7056 7968 2.555325 TCTGCTCATTGTTGCTTGAAGG 59.445 45.455 0.00 0.00 0.00 3.46
7119 8031 5.355910 ACAACTTCGTCAGTACCAAACAAAT 59.644 36.000 0.00 0.00 32.94 2.32
7196 8108 1.522355 CGCTGCCATGACGAGGAAT 60.522 57.895 0.00 0.00 0.00 3.01
7267 8179 0.773644 ACTCCAAGTTCCCATGCTGT 59.226 50.000 0.00 0.00 0.00 4.40
7280 8192 0.037590 CCCATGGTTCCGAACTCCAA 59.962 55.000 11.73 0.00 34.80 3.53
7342 8254 2.376518 TGTTTCTTGGAGAGCAGGGAAT 59.623 45.455 0.00 0.00 0.00 3.01
7357 8269 1.064017 TGTCCCTGCCTTGTTGTTTCT 60.064 47.619 0.00 0.00 0.00 2.52
7457 8375 2.136878 CGGGTCTAGGGCTCTGCAT 61.137 63.158 0.00 0.00 0.00 3.96
7471 8389 1.614241 GGCTCATAGTCACACCGGGT 61.614 60.000 6.32 0.00 0.00 5.28
7524 8442 4.542075 TTGTACGCACAACAGGCA 57.458 50.000 0.00 0.00 39.75 4.75
7661 8579 5.924825 GGTCTACAGTACTGTACCTGTTTTG 59.075 44.000 29.23 19.03 44.42 2.44
7677 8595 4.646945 TGAGCTAGGAAAGATGGTCTACAG 59.353 45.833 0.00 0.00 0.00 2.74
7836 8757 1.709147 ATCGTACGGGTTCTCGGTCG 61.709 60.000 16.52 1.47 34.11 4.79
7894 8815 2.504899 CGACTGCGAGCGTCATGT 60.505 61.111 15.82 0.89 40.82 3.21
7895 8816 3.906649 GCGACTGCGAGCGTCATG 61.907 66.667 15.82 0.00 40.82 3.07
7906 8827 2.125713 TACCATGTGCCGCGACTG 60.126 61.111 8.23 0.00 0.00 3.51
7907 8828 2.184322 CTACCATGTGCCGCGACT 59.816 61.111 8.23 0.00 0.00 4.18
7908 8829 1.878522 CTCTACCATGTGCCGCGAC 60.879 63.158 8.23 0.00 0.00 5.19
7909 8830 1.884075 AACTCTACCATGTGCCGCGA 61.884 55.000 8.23 0.00 0.00 5.87
7910 8831 1.447838 AACTCTACCATGTGCCGCG 60.448 57.895 0.00 0.00 0.00 6.46
7911 8832 0.391130 TCAACTCTACCATGTGCCGC 60.391 55.000 0.00 0.00 0.00 6.53
7912 8833 1.204704 TCTCAACTCTACCATGTGCCG 59.795 52.381 0.00 0.00 0.00 5.69
7913 8834 3.118629 TCATCTCAACTCTACCATGTGCC 60.119 47.826 0.00 0.00 0.00 5.01
7914 8835 3.868077 GTCATCTCAACTCTACCATGTGC 59.132 47.826 0.00 0.00 0.00 4.57
7915 8836 5.077134 TGTCATCTCAACTCTACCATGTG 57.923 43.478 0.00 0.00 0.00 3.21
7996 8917 2.523168 TCCTCGAGCACACCACCA 60.523 61.111 6.99 0.00 0.00 4.17
7997 8918 1.608717 ATCTCCTCGAGCACACCACC 61.609 60.000 6.99 0.00 0.00 4.61
7998 8919 0.459237 CATCTCCTCGAGCACACCAC 60.459 60.000 6.99 0.00 0.00 4.16
8052 8976 3.126171 CCACGAATAGCAACGATCCAAAA 59.874 43.478 0.00 0.00 0.00 2.44
8062 8986 3.535280 TGCTATCACCACGAATAGCAA 57.465 42.857 13.12 0.25 45.96 3.91
8389 9318 2.620115 AGCAGCAACGCAGCATATAAAT 59.380 40.909 6.13 0.00 43.44 1.40
8414 9343 3.581024 ATTGTTGCTACCACAATGCAG 57.419 42.857 0.00 0.00 38.01 4.41
8426 9355 9.586732 TCCATAAATAAGGCTAATATTGTTGCT 57.413 29.630 0.00 0.00 0.00 3.91
8472 9401 1.153168 CGCCAACCACCATAGGAGG 60.153 63.158 0.00 0.00 39.38 4.30
8486 9415 3.733960 CACGTCTCTCGGTCGCCA 61.734 66.667 0.00 0.00 44.69 5.69
8522 9451 0.179094 TGAGTTGCGTTGGTTCGAGT 60.179 50.000 0.00 0.00 0.00 4.18
8601 9530 6.405842 CGTCATATGCATAGGCTAATCTACCA 60.406 42.308 13.46 0.00 41.91 3.25
8604 9533 6.183360 GGACGTCATATGCATAGGCTAATCTA 60.183 42.308 18.91 0.00 41.91 1.98
8605 9534 5.394663 GGACGTCATATGCATAGGCTAATCT 60.395 44.000 18.91 0.00 41.91 2.40
8606 9535 4.806247 GGACGTCATATGCATAGGCTAATC 59.194 45.833 18.91 8.02 41.91 1.75
8608 9537 3.832490 AGGACGTCATATGCATAGGCTAA 59.168 43.478 18.91 0.00 41.91 3.09
8675 9655 3.034635 TGCCACAAAAGCCTTTTCCTAA 58.965 40.909 0.00 0.00 0.00 2.69
8676 9656 2.627699 CTGCCACAAAAGCCTTTTCCTA 59.372 45.455 0.00 0.00 0.00 2.94
8677 9657 1.413812 CTGCCACAAAAGCCTTTTCCT 59.586 47.619 0.00 0.00 0.00 3.36
8679 9659 1.412343 TCCTGCCACAAAAGCCTTTTC 59.588 47.619 0.00 0.00 0.00 2.29
8680 9660 1.494960 TCCTGCCACAAAAGCCTTTT 58.505 45.000 0.00 0.00 0.00 2.27
8701 9681 9.850628 GGTATTTTATTTTCTGTTACCCAAGTC 57.149 33.333 0.00 0.00 0.00 3.01
8729 9709 7.047271 AGGCAAATTGTGTTCAAGTTAACAAT 58.953 30.769 8.61 0.00 43.28 2.71
8733 9713 6.322712 AGGTAGGCAAATTGTGTTCAAGTTAA 59.677 34.615 0.00 0.00 39.34 2.01
8735 9715 4.649218 AGGTAGGCAAATTGTGTTCAAGTT 59.351 37.500 0.00 0.00 41.51 2.66
8737 9717 4.853924 AGGTAGGCAAATTGTGTTCAAG 57.146 40.909 0.00 0.00 36.97 3.02
8738 9718 6.065374 TCTTAGGTAGGCAAATTGTGTTCAA 58.935 36.000 0.00 0.00 37.98 2.69
8789 9778 5.367937 AGGAGGCTCATATTCTTAAGCTTCA 59.632 40.000 17.69 0.00 41.21 3.02
8842 9844 8.416329 GGCTTGAGACATAATTTGGTTATCAAT 58.584 33.333 9.28 0.00 34.98 2.57
8867 9869 2.276732 TGAAGCCCAGAAGTTCTTGG 57.723 50.000 16.95 16.95 32.77 3.61
8868 9870 3.217626 AGTTGAAGCCCAGAAGTTCTTG 58.782 45.455 1.56 0.00 0.00 3.02
8869 9871 3.584733 AGTTGAAGCCCAGAAGTTCTT 57.415 42.857 1.56 0.00 0.00 2.52
8870 9872 3.648545 ACTAGTTGAAGCCCAGAAGTTCT 59.351 43.478 0.00 0.00 0.00 3.01
8871 9873 4.009370 ACTAGTTGAAGCCCAGAAGTTC 57.991 45.455 0.00 0.00 0.00 3.01
8872 9874 5.763876 ATACTAGTTGAAGCCCAGAAGTT 57.236 39.130 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.