Multiple sequence alignment - TraesCS2B01G122700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G122700 chr2B 100.000 6364 0 0 1 6364 90006582 90012945 0.000000e+00 11753.0
1 TraesCS2B01G122700 chr2B 84.028 576 62 12 4953 5525 90027916 90028464 1.570000e-145 527.0
2 TraesCS2B01G122700 chr2B 85.526 380 42 7 4953 5330 90016989 90017357 1.000000e-102 385.0
3 TraesCS2B01G122700 chr2B 93.805 226 8 2 6131 6351 90018549 90018773 1.020000e-87 335.0
4 TraesCS2B01G122700 chr2B 92.889 225 11 2 6131 6351 90029808 90030031 7.960000e-84 322.0
5 TraesCS2B01G122700 chr2B 90.000 100 7 3 5433 5529 90017414 90017513 6.700000e-25 126.0
6 TraesCS2B01G122700 chr2B 88.172 93 3 6 1 93 353573552 353573468 3.140000e-18 104.0
7 TraesCS2B01G122700 chr2B 80.159 126 25 0 1149 1274 90027761 90027886 1.890000e-15 95.3
8 TraesCS2B01G122700 chr2D 92.431 2246 110 20 3607 5849 56798487 56800675 0.000000e+00 3151.0
9 TraesCS2B01G122700 chr2D 92.574 1818 84 13 87 1864 56794913 56796719 0.000000e+00 2562.0
10 TraesCS2B01G122700 chr2D 92.081 745 34 9 2884 3605 56797705 56798447 0.000000e+00 1026.0
11 TraesCS2B01G122700 chr2D 91.724 580 36 7 2266 2842 56797121 56797691 0.000000e+00 795.0
12 TraesCS2B01G122700 chr2D 94.062 421 21 3 1805 2222 56796700 56797119 2.500000e-178 636.0
13 TraesCS2B01G122700 chr2D 84.865 555 31 20 5846 6351 56800761 56801311 1.580000e-140 510.0
14 TraesCS2B01G122700 chr2D 91.509 212 18 0 5644 5855 38200308 38200097 6.240000e-75 292.0
15 TraesCS2B01G122700 chr2D 84.426 244 27 7 5847 6080 38200016 38199774 4.960000e-56 230.0
16 TraesCS2B01G122700 chr2D 80.498 241 35 10 1034 1273 56805269 56805498 2.360000e-39 174.0
17 TraesCS2B01G122700 chr2D 91.667 96 8 0 6256 6351 56786807 56786902 4.000000e-27 134.0
18 TraesCS2B01G122700 chr2D 89.796 98 9 1 2825 2921 97219647 97219744 2.410000e-24 124.0
19 TraesCS2B01G122700 chr2D 97.222 72 1 1 21 92 622920563 622920633 3.120000e-23 121.0
20 TraesCS2B01G122700 chr2A 93.029 2037 117 13 3609 5639 58127805 58129822 0.000000e+00 2952.0
21 TraesCS2B01G122700 chr2A 93.584 1434 59 7 798 2223 58124858 58126266 0.000000e+00 2108.0
22 TraesCS2B01G122700 chr2A 88.360 1366 82 26 2265 3606 58126266 58127578 0.000000e+00 1570.0
23 TraesCS2B01G122700 chr2A 82.990 582 69 13 4953 5529 58132234 58132790 3.430000e-137 499.0
24 TraesCS2B01G122700 chr2A 83.661 508 44 18 87 577 58123659 58124144 5.860000e-120 442.0
25 TraesCS2B01G122700 chr2A 83.871 186 19 3 5897 6072 319021049 319020865 3.950000e-37 167.0
26 TraesCS2B01G122700 chr2A 83.333 138 16 5 579 709 9056229 9056092 3.120000e-23 121.0
27 TraesCS2B01G122700 chr2A 88.764 89 3 4 1 89 623081363 623081444 1.130000e-17 102.0
28 TraesCS2B01G122700 chr5B 85.714 238 28 3 5847 6080 642830096 642830331 4.930000e-61 246.0
29 TraesCS2B01G122700 chr5B 82.609 115 18 2 587 700 708186673 708186786 4.060000e-17 100.0
30 TraesCS2B01G122700 chr6A 85.356 239 29 4 5847 6080 54079119 54078882 6.370000e-60 243.0
31 TraesCS2B01G122700 chr6A 83.041 171 15 7 5699 5855 54079370 54079200 6.650000e-30 143.0
32 TraesCS2B01G122700 chr6B 85.294 238 30 4 5847 6080 151200013 151199777 2.290000e-59 241.0
33 TraesCS2B01G122700 chr6B 85.859 99 7 2 1 92 603147407 603147309 1.460000e-16 99.0
34 TraesCS2B01G122700 chr3D 84.293 191 26 3 5878 6064 603351583 603351393 3.920000e-42 183.0
35 TraesCS2B01G122700 chr3D 84.167 120 16 3 579 697 104212803 104212920 5.210000e-21 113.0
36 TraesCS2B01G122700 chr7B 94.186 86 5 0 2824 2909 684403308 684403223 1.440000e-26 132.0
37 TraesCS2B01G122700 chr7B 84.091 132 19 2 580 709 41027351 41027220 6.700000e-25 126.0
38 TraesCS2B01G122700 chr7B 95.890 73 2 1 17 89 714509755 714509684 4.030000e-22 117.0
39 TraesCS2B01G122700 chr7B 83.621 116 17 2 595 709 640867611 640867497 2.430000e-19 108.0
40 TraesCS2B01G122700 chr7B 87.692 65 7 1 4087 4150 645425561 645425625 2.460000e-09 75.0
41 TraesCS2B01G122700 chr7B 93.182 44 2 1 705 748 734427971 734427929 5.330000e-06 63.9
42 TraesCS2B01G122700 chr4D 94.186 86 5 0 2825 2910 467755794 467755879 1.440000e-26 132.0
43 TraesCS2B01G122700 chr4D 74.926 339 51 17 1196 1508 298542222 298541892 2.410000e-24 124.0
44 TraesCS2B01G122700 chr7D 94.118 85 5 0 2825 2909 103820620 103820536 5.180000e-26 130.0
45 TraesCS2B01G122700 chr7D 84.677 124 17 2 578 700 63707242 63707364 8.660000e-24 122.0
46 TraesCS2B01G122700 chr7D 95.000 40 2 0 701 740 237403065 237403026 5.330000e-06 63.9
47 TraesCS2B01G122700 chr7A 93.103 87 6 0 2823 2909 33885896 33885810 1.860000e-25 128.0
48 TraesCS2B01G122700 chr7A 82.677 127 16 6 586 709 65523675 65523552 2.430000e-19 108.0
49 TraesCS2B01G122700 chr5A 93.023 86 6 0 2824 2909 476958980 476958895 6.700000e-25 126.0
50 TraesCS2B01G122700 chr5A 92.308 78 3 2 31 106 46616256 46616332 2.430000e-19 108.0
51 TraesCS2B01G122700 chr1A 89.362 94 8 2 2819 2910 474384840 474384747 4.030000e-22 117.0
52 TraesCS2B01G122700 chr1A 88.542 96 10 1 2820 2914 251695790 251695695 1.450000e-21 115.0
53 TraesCS2B01G122700 chr1A 86.667 60 3 3 721 776 45549113 45549055 1.920000e-05 62.1
54 TraesCS2B01G122700 chr1A 90.909 44 4 0 705 748 557879902 557879859 6.890000e-05 60.2
55 TraesCS2B01G122700 chr4B 83.607 122 20 0 588 709 653438751 653438630 1.450000e-21 115.0
56 TraesCS2B01G122700 chr4B 86.408 103 7 3 1196 1295 370426311 370426213 8.730000e-19 106.0
57 TraesCS2B01G122700 chr4B 84.884 86 13 0 5668 5753 128528316 128528401 3.160000e-13 87.9
58 TraesCS2B01G122700 chr4A 98.485 66 0 1 32 97 223857892 223857828 1.450000e-21 115.0
59 TraesCS2B01G122700 chr4A 74.462 325 52 15 1207 1508 187261249 187261565 1.880000e-20 111.0
60 TraesCS2B01G122700 chr4A 82.883 111 16 3 5644 5753 504184206 504184314 5.250000e-16 97.1
61 TraesCS2B01G122700 chr1B 85.321 109 13 3 2808 2916 125755087 125755192 6.750000e-20 110.0
62 TraesCS2B01G122700 chr3B 88.764 89 6 4 1 89 302364776 302364692 8.730000e-19 106.0
63 TraesCS2B01G122700 chr3B 88.764 89 3 5 2 90 814840218 814840137 1.130000e-17 102.0
64 TraesCS2B01G122700 chr3B 86.364 66 8 1 4087 4151 669100997 669101062 3.180000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G122700 chr2B 90006582 90012945 6363 False 11753.000000 11753 100.000000 1 6364 1 chr2B.!!$F1 6363
1 TraesCS2B01G122700 chr2B 90027761 90030031 2270 False 314.766667 527 85.692000 1149 6351 3 chr2B.!!$F3 5202
2 TraesCS2B01G122700 chr2B 90016989 90018773 1784 False 282.000000 385 89.777000 4953 6351 3 chr2B.!!$F2 1398
3 TraesCS2B01G122700 chr2D 56794913 56805498 10585 False 1264.857143 3151 89.747857 87 6351 7 chr2D.!!$F4 6264
4 TraesCS2B01G122700 chr2D 38199774 38200308 534 True 261.000000 292 87.967500 5644 6080 2 chr2D.!!$R1 436
5 TraesCS2B01G122700 chr2A 58123659 58132790 9131 False 1514.200000 2952 88.324800 87 5639 5 chr2A.!!$F2 5552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
584 622 0.319211 AATTCGGTGTCTCGCGAACA 60.319 50.000 11.33 14.64 33.94 3.18 F
881 1552 0.391130 TTGCACCCACTATGAGCGTC 60.391 55.000 0.00 0.00 0.00 5.19 F
1077 1751 2.283173 CTCAACCCCAACCCCAGC 60.283 66.667 0.00 0.00 0.00 4.85 F
1953 2668 0.310854 CGGCTCGGGCATTTAATTCC 59.689 55.000 10.74 0.00 40.87 3.01 F
2288 3005 1.154488 CATTGTTTCCACGTCGCCG 60.154 57.895 0.00 0.00 40.83 6.46 F
3675 4646 0.375106 GCTGCTGTAGTTGCGAATCC 59.625 55.000 0.00 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1491 2165 0.320421 GTCACCTCTTGGCACGCTTA 60.320 55.0 0.00 0.00 36.63 3.09 R
1822 2496 1.157585 GAAACGTCAGAAGGAAGCCC 58.842 55.0 0.00 0.00 0.00 5.19 R
2244 2961 1.446016 ACTGCTACAGGGAAAACCCT 58.554 50.0 1.53 1.53 41.63 4.34 R
3635 4606 0.118346 ATACAGTCACCCCAGGACCA 59.882 55.0 0.00 0.00 35.89 4.02 R
4120 5092 0.250901 AATGAGGGTGTGTGACCTGC 60.251 55.0 0.00 0.00 45.33 4.85 R
5373 6347 0.732571 ACGAGTGTTGTTTGCAGGTG 59.267 50.0 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.934023 AGAAGTTCTAGATACATCCCTTCTAG 57.066 38.462 2.75 0.00 40.09 2.43
36 37 8.729047 AGAAGTTCTAGATACATCCCTTCTAGA 58.271 37.037 2.75 5.10 43.74 2.43
37 38 9.528489 GAAGTTCTAGATACATCCCTTCTAGAT 57.472 37.037 9.10 0.00 44.41 1.98
39 40 9.969001 AGTTCTAGATACATCCCTTCTAGATAC 57.031 37.037 9.10 9.82 44.41 2.24
40 41 9.742144 GTTCTAGATACATCCCTTCTAGATACA 57.258 37.037 9.10 0.00 44.41 2.29
43 44 9.349713 CTAGATACATCCCTTCTAGATACATCC 57.650 40.741 0.00 0.00 40.84 3.51
44 45 7.129425 AGATACATCCCTTCTAGATACATCCC 58.871 42.308 0.00 0.00 0.00 3.85
45 46 4.430441 ACATCCCTTCTAGATACATCCCC 58.570 47.826 0.00 0.00 0.00 4.81
46 47 4.110426 ACATCCCTTCTAGATACATCCCCT 59.890 45.833 0.00 0.00 0.00 4.79
47 48 4.852991 TCCCTTCTAGATACATCCCCTT 57.147 45.455 0.00 0.00 0.00 3.95
48 49 5.171541 TCCCTTCTAGATACATCCCCTTT 57.828 43.478 0.00 0.00 0.00 3.11
49 50 5.548573 TCCCTTCTAGATACATCCCCTTTT 58.451 41.667 0.00 0.00 0.00 2.27
50 51 6.699688 TCCCTTCTAGATACATCCCCTTTTA 58.300 40.000 0.00 0.00 0.00 1.52
51 52 7.321530 TCCCTTCTAGATACATCCCCTTTTAT 58.678 38.462 0.00 0.00 0.00 1.40
52 53 7.458170 TCCCTTCTAGATACATCCCCTTTTATC 59.542 40.741 0.00 0.00 0.00 1.75
53 54 7.311360 CCCTTCTAGATACATCCCCTTTTATCC 60.311 44.444 0.00 0.00 0.00 2.59
54 55 7.237679 CCTTCTAGATACATCCCCTTTTATCCA 59.762 40.741 0.00 0.00 0.00 3.41
55 56 8.757307 TTCTAGATACATCCCCTTTTATCCAT 57.243 34.615 0.00 0.00 0.00 3.41
56 57 8.757307 TCTAGATACATCCCCTTTTATCCATT 57.243 34.615 0.00 0.00 0.00 3.16
57 58 9.182642 TCTAGATACATCCCCTTTTATCCATTT 57.817 33.333 0.00 0.00 0.00 2.32
58 59 9.813826 CTAGATACATCCCCTTTTATCCATTTT 57.186 33.333 0.00 0.00 0.00 1.82
59 60 8.482852 AGATACATCCCCTTTTATCCATTTTG 57.517 34.615 0.00 0.00 0.00 2.44
60 61 8.288812 AGATACATCCCCTTTTATCCATTTTGA 58.711 33.333 0.00 0.00 0.00 2.69
61 62 9.093458 GATACATCCCCTTTTATCCATTTTGAT 57.907 33.333 0.00 0.00 0.00 2.57
62 63 7.128234 ACATCCCCTTTTATCCATTTTGATG 57.872 36.000 0.00 0.00 33.80 3.07
63 64 6.902416 ACATCCCCTTTTATCCATTTTGATGA 59.098 34.615 0.00 0.00 32.39 2.92
64 65 6.790232 TCCCCTTTTATCCATTTTGATGAC 57.210 37.500 0.00 0.00 0.00 3.06
65 66 6.259893 TCCCCTTTTATCCATTTTGATGACA 58.740 36.000 0.00 0.00 0.00 3.58
66 67 6.728164 TCCCCTTTTATCCATTTTGATGACAA 59.272 34.615 0.00 0.00 0.00 3.18
67 68 7.043565 CCCCTTTTATCCATTTTGATGACAAG 58.956 38.462 0.00 0.00 37.32 3.16
68 69 7.310609 CCCCTTTTATCCATTTTGATGACAAGT 60.311 37.037 0.00 0.00 37.32 3.16
69 70 8.748412 CCCTTTTATCCATTTTGATGACAAGTA 58.252 33.333 0.00 0.00 37.32 2.24
75 76 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
76 77 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
77 78 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
78 79 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
79 80 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
80 81 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
81 82 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
82 83 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
83 84 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
84 85 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
85 86 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
156 157 2.153645 TGCATTGATTTCGAGCTGTGT 58.846 42.857 0.00 0.00 0.00 3.72
157 158 2.160219 TGCATTGATTTCGAGCTGTGTC 59.840 45.455 0.00 0.00 0.00 3.67
158 159 2.160219 GCATTGATTTCGAGCTGTGTCA 59.840 45.455 0.00 0.00 0.00 3.58
210 230 4.373116 CCGTCACACGACCCCCTG 62.373 72.222 0.00 0.00 46.05 4.45
214 235 4.742201 CACACGACCCCCTGCTCG 62.742 72.222 0.00 0.00 35.96 5.03
219 240 3.083997 GACCCCCTGCTCGTGGAT 61.084 66.667 0.00 0.00 0.00 3.41
242 263 2.282745 GCCCCAGGATGCCATAGC 60.283 66.667 0.00 0.00 40.48 2.97
267 288 2.186644 CCACGTCGGATCCATGCA 59.813 61.111 13.41 0.00 36.56 3.96
377 399 3.935456 TAAGCCGCCCTGGGAGGAA 62.935 63.158 36.29 18.86 45.77 3.36
381 403 2.434331 CGCCCTGGGAGGAAAACA 59.566 61.111 19.27 0.00 37.67 2.83
393 415 3.540367 GAAAACACGGGGGCTCGGA 62.540 63.158 0.00 0.00 0.00 4.55
394 416 3.122727 AAAACACGGGGGCTCGGAA 62.123 57.895 0.00 0.00 0.00 4.30
523 561 8.905702 CACTGCTTAAGAACAAATTGTTATCAC 58.094 33.333 11.71 0.00 41.28 3.06
567 605 8.655935 ATCACCTCTCATTCTTTAAACCAAAT 57.344 30.769 0.00 0.00 0.00 2.32
577 615 6.308371 TCTTTAAACCAAATTCGGTGTCTC 57.692 37.500 0.00 0.00 39.95 3.36
584 622 0.319211 AATTCGGTGTCTCGCGAACA 60.319 50.000 11.33 14.64 33.94 3.18
604 642 3.226777 CAAACCTGTGGTTGGATGGTTA 58.773 45.455 2.49 0.00 46.20 2.85
605 643 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
621 659 6.268847 GGATGGTTAGAAGGACAGTGATATCT 59.731 42.308 3.98 0.00 0.00 1.98
627 665 1.335182 AGGACAGTGATATCTCGTGCG 59.665 52.381 3.98 0.00 0.00 5.34
663 701 4.278419 AGTTTCAAACCTACATTGGTGCTC 59.722 41.667 0.00 0.00 40.73 4.26
675 713 2.107950 TGGTGCTCGTATTTTCCTGG 57.892 50.000 0.00 0.00 0.00 4.45
683 721 7.132863 GTGCTCGTATTTTCCTGGATTTATTC 58.867 38.462 0.00 0.00 0.00 1.75
694 732 2.230660 GGATTTATTCCAGGCCTTCCG 58.769 52.381 0.00 0.00 44.74 4.30
708 746 1.472552 CCTTCCGGCGATATGTGTTCA 60.473 52.381 9.30 0.00 0.00 3.18
713 751 3.319689 TCCGGCGATATGTGTTCATAGAA 59.680 43.478 9.30 0.00 39.49 2.10
719 757 6.302615 GCGATATGTGTTCATAGAAATGAGC 58.697 40.000 0.00 0.00 42.97 4.26
745 783 1.404035 TGCGTATGTATGAGCGTCTGT 59.596 47.619 0.00 0.00 0.00 3.41
751 789 1.067846 TGTATGAGCGTCTGTGTCACC 60.068 52.381 0.00 0.00 0.00 4.02
761 799 3.062369 CGTCTGTGTCACCGTGTTTAAAA 59.938 43.478 0.00 0.00 0.00 1.52
881 1552 0.391130 TTGCACCCACTATGAGCGTC 60.391 55.000 0.00 0.00 0.00 5.19
923 1597 2.657237 GTGCACCGAGTGTAGGCT 59.343 61.111 5.22 0.00 35.75 4.58
1075 1749 3.909651 GCCTCAACCCCAACCCCA 61.910 66.667 0.00 0.00 0.00 4.96
1076 1750 2.440599 CCTCAACCCCAACCCCAG 59.559 66.667 0.00 0.00 0.00 4.45
1077 1751 2.283173 CTCAACCCCAACCCCAGC 60.283 66.667 0.00 0.00 0.00 4.85
1078 1752 3.886550 CTCAACCCCAACCCCAGCC 62.887 68.421 0.00 0.00 0.00 4.85
1177 1851 4.212913 GCCGCGCCAGATCTGAGA 62.213 66.667 24.62 0.00 0.00 3.27
1541 2215 2.558350 CCTGAGGCTCCCTTGGATTTTT 60.558 50.000 12.86 0.00 31.76 1.94
1738 2412 2.609350 GCAATCAAATCACGGCACATT 58.391 42.857 0.00 0.00 0.00 2.71
1822 2496 3.004106 GCCAGCTTAATTAGGCATCACAG 59.996 47.826 20.30 4.72 46.26 3.66
1949 2664 0.963355 AAAGCGGCTCGGGCATTTAA 60.963 50.000 10.74 0.00 40.87 1.52
1953 2668 0.310854 CGGCTCGGGCATTTAATTCC 59.689 55.000 10.74 0.00 40.87 3.01
2075 2790 9.753674 TTCTTTGTTATCATTTTCTATGGGTCT 57.246 29.630 0.00 0.00 0.00 3.85
2156 2871 6.884472 TGGATTAACCATTTCCTACTCTCA 57.116 37.500 0.00 0.00 44.64 3.27
2223 2940 8.885693 ACAGTGATCTATCTATGCAATACCTA 57.114 34.615 0.00 0.00 0.00 3.08
2224 2941 8.965819 ACAGTGATCTATCTATGCAATACCTAG 58.034 37.037 0.00 0.00 0.00 3.02
2225 2942 8.965819 CAGTGATCTATCTATGCAATACCTAGT 58.034 37.037 0.00 0.00 0.00 2.57
2226 2943 9.184523 AGTGATCTATCTATGCAATACCTAGTC 57.815 37.037 0.00 0.00 0.00 2.59
2227 2944 8.961634 GTGATCTATCTATGCAATACCTAGTCA 58.038 37.037 0.00 0.00 0.00 3.41
2228 2945 9.706529 TGATCTATCTATGCAATACCTAGTCAT 57.293 33.333 0.00 0.00 0.00 3.06
2229 2946 9.964303 GATCTATCTATGCAATACCTAGTCATG 57.036 37.037 0.00 0.00 0.00 3.07
2230 2947 8.885693 TCTATCTATGCAATACCTAGTCATGT 57.114 34.615 0.00 0.00 0.00 3.21
2231 2948 8.743714 TCTATCTATGCAATACCTAGTCATGTG 58.256 37.037 0.00 0.00 0.00 3.21
2232 2949 6.731292 TCTATGCAATACCTAGTCATGTGT 57.269 37.500 0.00 0.00 0.00 3.72
2233 2950 7.833285 TCTATGCAATACCTAGTCATGTGTA 57.167 36.000 0.00 0.00 0.00 2.90
2234 2951 8.422577 TCTATGCAATACCTAGTCATGTGTAT 57.577 34.615 0.00 0.00 0.00 2.29
2235 2952 8.870116 TCTATGCAATACCTAGTCATGTGTATT 58.130 33.333 0.00 0.00 34.99 1.89
2236 2953 9.494271 CTATGCAATACCTAGTCATGTGTATTT 57.506 33.333 0.00 0.00 32.97 1.40
2237 2954 7.552458 TGCAATACCTAGTCATGTGTATTTG 57.448 36.000 0.00 0.00 32.97 2.32
2238 2955 7.109501 TGCAATACCTAGTCATGTGTATTTGT 58.890 34.615 0.00 0.00 32.97 2.83
2239 2956 7.065683 TGCAATACCTAGTCATGTGTATTTGTG 59.934 37.037 0.00 0.00 32.97 3.33
2240 2957 7.279981 GCAATACCTAGTCATGTGTATTTGTGA 59.720 37.037 0.00 0.00 32.97 3.58
2241 2958 9.330063 CAATACCTAGTCATGTGTATTTGTGAT 57.670 33.333 0.00 0.00 32.97 3.06
2246 2963 9.645059 CCTAGTCATGTGTATTTGTGATATAGG 57.355 37.037 0.00 0.00 31.99 2.57
2247 2964 9.645059 CTAGTCATGTGTATTTGTGATATAGGG 57.355 37.037 0.00 0.00 0.00 3.53
2248 2965 8.034313 AGTCATGTGTATTTGTGATATAGGGT 57.966 34.615 0.00 0.00 0.00 4.34
2249 2966 8.494433 AGTCATGTGTATTTGTGATATAGGGTT 58.506 33.333 0.00 0.00 0.00 4.11
2250 2967 9.120538 GTCATGTGTATTTGTGATATAGGGTTT 57.879 33.333 0.00 0.00 0.00 3.27
2251 2968 9.693739 TCATGTGTATTTGTGATATAGGGTTTT 57.306 29.630 0.00 0.00 0.00 2.43
2252 2969 9.950680 CATGTGTATTTGTGATATAGGGTTTTC 57.049 33.333 0.00 0.00 0.00 2.29
2253 2970 8.514330 TGTGTATTTGTGATATAGGGTTTTCC 57.486 34.615 0.00 0.00 39.75 3.13
2285 3002 2.544686 TGGTTACATTGTTTCCACGTCG 59.455 45.455 0.00 0.00 0.00 5.12
2288 3005 1.154488 CATTGTTTCCACGTCGCCG 60.154 57.895 0.00 0.00 40.83 6.46
2404 3124 9.268268 TCGTATGTTATTATCTTAGCCCAAAAG 57.732 33.333 0.00 0.00 0.00 2.27
2409 3129 9.528489 TGTTATTATCTTAGCCCAAAAGTCTTT 57.472 29.630 0.00 0.00 0.00 2.52
2414 3134 6.327279 TCTTAGCCCAAAAGTCTTTTTAGC 57.673 37.500 16.32 16.32 34.81 3.09
2420 3140 3.674753 CCAAAAGTCTTTTTAGCGCCATG 59.325 43.478 2.29 0.00 34.81 3.66
2483 3203 1.961180 AAAGAGTCCGGAGATGGCGG 61.961 60.000 3.06 0.00 0.00 6.13
2512 3232 2.169832 TGTTGCTTAGGTCTGCACTC 57.830 50.000 0.00 0.00 39.05 3.51
2593 3313 6.486320 TGCAAGATGTTCAATGAAGTTACTGA 59.514 34.615 0.00 0.00 0.00 3.41
2594 3314 6.798959 GCAAGATGTTCAATGAAGTTACTGAC 59.201 38.462 0.00 0.00 0.00 3.51
2595 3315 7.308229 GCAAGATGTTCAATGAAGTTACTGACT 60.308 37.037 0.00 0.00 41.47 3.41
2645 3365 9.290483 GTTCTTTATTTTGGAATAACTAGCTGC 57.710 33.333 0.00 0.00 37.43 5.25
2654 3374 8.980143 TTGGAATAACTAGCTGCAATTTAAAC 57.020 30.769 1.02 0.00 0.00 2.01
2674 3394 4.811969 ACATATCCCTGTTTCGTGTACA 57.188 40.909 0.00 0.00 0.00 2.90
2766 3486 8.765219 CCTATATTTCTCGTGTAGGTTTCATTG 58.235 37.037 0.00 0.00 0.00 2.82
2786 3506 7.038048 TCATTGACACAGCTTTCTAGTATCAG 58.962 38.462 0.00 0.00 0.00 2.90
2789 3509 3.119291 CACAGCTTTCTAGTATCAGGCG 58.881 50.000 0.00 0.00 0.00 5.52
2795 3515 4.683781 GCTTTCTAGTATCAGGCGATCTTG 59.316 45.833 0.00 0.00 32.73 3.02
2850 3570 5.850278 TCCCTCCGTCCCATAATATAAGAT 58.150 41.667 0.00 0.00 0.00 2.40
2851 3571 5.661312 TCCCTCCGTCCCATAATATAAGATG 59.339 44.000 0.00 0.00 0.00 2.90
2852 3572 5.425539 CCCTCCGTCCCATAATATAAGATGT 59.574 44.000 0.00 0.00 0.00 3.06
2857 3577 9.062524 TCCGTCCCATAATATAAGATGTTTTTG 57.937 33.333 0.00 0.00 0.00 2.44
2858 3578 7.807907 CCGTCCCATAATATAAGATGTTTTTGC 59.192 37.037 0.00 0.00 0.00 3.68
2871 3591 7.003939 AGATGTTTTTGCAAGTTGTTTTAGC 57.996 32.000 4.48 0.00 0.00 3.09
2872 3592 6.818142 AGATGTTTTTGCAAGTTGTTTTAGCT 59.182 30.769 4.48 0.00 0.00 3.32
2874 3594 6.597614 TGTTTTTGCAAGTTGTTTTAGCTTG 58.402 32.000 4.48 0.00 46.68 4.01
2881 3601 5.257864 CAAGTTGTTTTAGCTTGCAAAAGC 58.742 37.500 0.00 0.40 40.08 3.51
3054 3781 2.821378 CAATCAGTCTGCCCATGTGAAA 59.179 45.455 0.00 0.00 0.00 2.69
3112 3839 7.012515 GCATTGAATGATGGCCAATTTTATTCA 59.987 33.333 10.96 14.93 32.94 2.57
3121 3848 6.002704 TGGCCAATTTTATTCATGTGCTTTT 58.997 32.000 0.61 0.00 0.00 2.27
3181 3908 2.226674 CGGTCAAAGGAAAGAAAGGCTC 59.773 50.000 0.00 0.00 0.00 4.70
3250 3977 3.522553 GCTACTACTCTTTCGGCACAAT 58.477 45.455 0.00 0.00 0.00 2.71
3254 3981 4.579869 ACTACTCTTTCGGCACAATTGAT 58.420 39.130 13.59 0.00 0.00 2.57
3291 4018 4.154942 ACTTTCATCCATCTGTTTGCCTT 58.845 39.130 0.00 0.00 0.00 4.35
3352 4079 1.888436 CTCAGCAGGGCCGTCTACAA 61.888 60.000 0.00 0.00 0.00 2.41
3367 4094 2.823154 TCTACAAAAATTTGGGGCCTCG 59.177 45.455 0.84 0.00 42.34 4.63
3437 4168 5.001232 TGCAACTAAGTGTACCCTCATTTC 58.999 41.667 0.00 0.00 0.00 2.17
3443 4174 8.964476 ACTAAGTGTACCCTCATTTCATTATG 57.036 34.615 0.00 0.00 0.00 1.90
3555 4302 8.961294 ACATACCTAACTGAGTAGTACTACTG 57.039 38.462 34.67 24.36 45.63 2.74
3567 4314 4.156455 AGTACTACTGGGGATTGCATTG 57.844 45.455 0.00 0.00 0.00 2.82
3582 4329 4.320608 TGCATTGAAAAGAACCAGGAAC 57.679 40.909 0.00 0.00 0.00 3.62
3619 4590 4.808414 AAAAGAAAGGGCTTATGGCTTC 57.192 40.909 2.11 0.00 41.46 3.86
3631 4602 4.792068 CTTATGGCTTCCCTTGGAATGTA 58.208 43.478 0.00 0.00 41.23 2.29
3632 4603 3.979501 ATGGCTTCCCTTGGAATGTAT 57.020 42.857 0.00 0.00 41.23 2.29
3633 4604 3.297134 TGGCTTCCCTTGGAATGTATC 57.703 47.619 0.00 0.00 41.23 2.24
3675 4646 0.375106 GCTGCTGTAGTTGCGAATCC 59.625 55.000 0.00 0.00 0.00 3.01
3678 4649 2.006772 CTGTAGTTGCGAATCCGGC 58.993 57.895 0.00 0.00 36.06 6.13
3681 4652 2.712944 TAGTTGCGAATCCGGCGGA 61.713 57.895 33.10 33.10 35.55 5.54
3682 4653 2.023414 TAGTTGCGAATCCGGCGGAT 62.023 55.000 34.54 34.54 45.46 4.18
3683 4654 2.587753 TTGCGAATCCGGCGGATC 60.588 61.111 38.76 28.54 42.27 3.36
3685 4656 3.338676 GCGAATCCGGCGGATCAC 61.339 66.667 38.76 31.05 42.27 3.06
3775 4746 2.196295 GCGACTCACTATTCTCGCTT 57.804 50.000 3.74 0.00 46.28 4.68
3786 4757 3.885484 ATTCTCGCTTGTGAAGTTGTG 57.115 42.857 0.00 0.00 0.00 3.33
3799 4770 1.885850 GTTGTGGAGGAACGCACGT 60.886 57.895 0.00 0.00 0.00 4.49
3809 4780 2.142418 GAACGCACGTTCGACCAGTG 62.142 60.000 15.92 9.07 43.82 3.66
3816 4787 1.227853 GTTCGACCAGTGGGCTGTT 60.228 57.895 14.67 0.00 41.02 3.16
3831 4802 2.820037 GTTGCGAGTAGGCCCAGC 60.820 66.667 0.00 0.00 0.00 4.85
3970 4942 2.022764 TAACATGTGTCCGCATCTGG 57.977 50.000 0.00 0.00 0.00 3.86
3989 4961 0.714439 GCGCGTCCTTCTACAGTTTC 59.286 55.000 8.43 0.00 0.00 2.78
3993 4965 2.029290 GCGTCCTTCTACAGTTTCCTCA 60.029 50.000 0.00 0.00 0.00 3.86
3994 4966 3.839293 CGTCCTTCTACAGTTTCCTCAG 58.161 50.000 0.00 0.00 0.00 3.35
3999 4971 6.606395 GTCCTTCTACAGTTTCCTCAGGTATA 59.394 42.308 0.00 0.00 0.00 1.47
4000 4972 7.288158 GTCCTTCTACAGTTTCCTCAGGTATAT 59.712 40.741 0.00 0.00 0.00 0.86
4001 4973 8.508601 TCCTTCTACAGTTTCCTCAGGTATATA 58.491 37.037 0.00 0.00 0.00 0.86
4002 4974 9.144298 CCTTCTACAGTTTCCTCAGGTATATAA 57.856 37.037 0.00 0.00 0.00 0.98
4011 4983 3.119919 CCTCAGGTATATAAGCGGACGAC 60.120 52.174 0.00 0.00 0.00 4.34
4013 4985 2.094854 CAGGTATATAAGCGGACGACCC 60.095 54.545 0.00 0.00 0.00 4.46
4069 5041 4.461198 AGGAACTGGACGTCTTTTTCATT 58.539 39.130 16.46 5.11 37.18 2.57
4086 5058 5.772825 TTCATTGTCTTTTCCTCTGGTTG 57.227 39.130 0.00 0.00 0.00 3.77
4182 5154 7.224557 AGTGCACAAAAGAAAACACATTAATCC 59.775 33.333 21.04 0.00 0.00 3.01
4183 5155 6.481644 TGCACAAAAGAAAACACATTAATCCC 59.518 34.615 0.00 0.00 0.00 3.85
4218 5190 4.823989 ACCATGCATAGTAATTCTGCCTTC 59.176 41.667 0.00 0.00 35.02 3.46
4250 5222 0.964358 AGAAGCCAGCTGCATCCAAC 60.964 55.000 8.66 0.00 44.83 3.77
4281 5253 2.422276 GGTGTCAACCAAACTGCATC 57.578 50.000 0.00 0.00 46.75 3.91
4308 5280 6.350612 GCTCTAGACTTAGTGAATCACCAGTT 60.351 42.308 14.70 9.02 34.49 3.16
4323 5295 6.449635 TCACCAGTTGCCATGATATTTTAC 57.550 37.500 0.00 0.00 0.00 2.01
4342 5314 2.511659 ACTTGAACTGATGCACATGCT 58.488 42.857 5.31 0.00 42.66 3.79
4372 5344 9.352784 GAAGCTATAGCACATATAAGTTCTCTG 57.647 37.037 26.07 0.00 45.16 3.35
4474 5447 4.970860 ATATGAGGTCTGAAGGGTGATG 57.029 45.455 0.00 0.00 0.00 3.07
4475 5448 2.030027 TGAGGTCTGAAGGGTGATGT 57.970 50.000 0.00 0.00 0.00 3.06
4496 5469 2.101783 CCTGCACCATGAGGCAATAAA 58.898 47.619 11.53 0.00 39.93 1.40
4502 5475 4.116961 CACCATGAGGCAATAAAATGCTG 58.883 43.478 0.00 0.00 45.68 4.41
4534 5507 6.262273 TGTTTACCAGAAATCCAGAACTGTTC 59.738 38.462 12.54 12.54 0.00 3.18
4549 5522 2.029964 TTCGGTTCTGGTGTCCGC 59.970 61.111 0.00 0.00 43.35 5.54
4565 5538 4.033587 GTGTCCGCGATGTTTATGTTGTAT 59.966 41.667 8.23 0.00 0.00 2.29
4570 5543 6.144886 TCCGCGATGTTTATGTTGTATGTATC 59.855 38.462 8.23 0.00 0.00 2.24
4582 5555 5.867174 TGTTGTATGTATCAAGTTCTGACCG 59.133 40.000 0.00 0.00 36.69 4.79
4585 5558 1.553248 TGTATCAAGTTCTGACCGGGG 59.447 52.381 6.32 0.00 36.69 5.73
4587 5560 1.201429 ATCAAGTTCTGACCGGGGCT 61.201 55.000 6.32 0.00 36.69 5.19
4588 5561 1.672356 CAAGTTCTGACCGGGGCTG 60.672 63.158 6.32 0.00 0.00 4.85
4658 5631 8.476064 TTGCATAAATTTGCTGGATATCCTTA 57.524 30.769 22.35 10.90 43.18 2.69
4659 5632 8.654485 TGCATAAATTTGCTGGATATCCTTAT 57.346 30.769 22.35 12.56 43.18 1.73
4660 5633 9.752228 TGCATAAATTTGCTGGATATCCTTATA 57.248 29.630 22.35 1.23 43.18 0.98
4707 5680 0.037590 ATACAACAGGCCTTTCCGCA 59.962 50.000 0.00 0.00 40.77 5.69
5018 5991 4.107820 AGGAACTGGAGAGGCTTAAGATT 58.892 43.478 6.67 0.00 37.18 2.40
5162 6135 0.396695 AGCTGCCATCCCAATTCCAG 60.397 55.000 0.00 0.00 0.00 3.86
5240 6214 3.429207 CAGATATGATGCAGCAAGACTCG 59.571 47.826 9.54 0.00 0.00 4.18
5373 6347 4.439253 AGCACCTTCTAATTATGGACCC 57.561 45.455 6.38 0.00 0.00 4.46
5660 7948 2.452600 ATGTTTGGTTGGGACACTGT 57.547 45.000 0.00 0.00 39.29 3.55
5666 7954 2.645802 TGGTTGGGACACTGTTAACAC 58.354 47.619 3.59 0.00 39.29 3.32
5690 7978 6.315393 ACATTCGGTGTTGTAATGAGAATACC 59.685 38.462 0.00 0.00 38.01 2.73
5717 8005 2.044123 AGATTGGGGTTTGAGCGATC 57.956 50.000 0.00 0.00 0.00 3.69
5895 8272 0.684479 CTCACGGTGGAGGGAGATCA 60.684 60.000 8.50 0.00 0.00 2.92
5904 8281 3.458163 GGGAGATCACCGGCGTCA 61.458 66.667 6.01 0.00 0.00 4.35
5932 8309 2.042435 CGGAGAAGGGAGAGGGCT 60.042 66.667 0.00 0.00 0.00 5.19
6017 8405 3.551890 TGAAGAAAATATCTGACGAGCGC 59.448 43.478 0.00 0.00 38.79 5.92
6024 8412 2.126914 ATCTGACGAGCGCAGAATAC 57.873 50.000 11.47 0.00 44.71 1.89
6080 8468 0.179059 CATACCAGTGCGTATGGGCA 60.179 55.000 17.42 0.00 41.21 5.36
6081 8469 0.544223 ATACCAGTGCGTATGGGCAA 59.456 50.000 6.61 0.00 45.93 4.52
6082 8470 0.325272 TACCAGTGCGTATGGGCAAA 59.675 50.000 6.61 0.00 45.93 3.68
6083 8471 0.538516 ACCAGTGCGTATGGGCAAAA 60.539 50.000 6.61 0.00 45.93 2.44
6084 8472 0.171007 CCAGTGCGTATGGGCAAAAG 59.829 55.000 0.00 0.00 45.93 2.27
6085 8473 1.164411 CAGTGCGTATGGGCAAAAGA 58.836 50.000 0.00 0.00 45.93 2.52
6086 8474 1.539388 CAGTGCGTATGGGCAAAAGAA 59.461 47.619 0.00 0.00 45.93 2.52
6087 8475 2.030363 CAGTGCGTATGGGCAAAAGAAA 60.030 45.455 0.00 0.00 45.93 2.52
6088 8476 2.030274 AGTGCGTATGGGCAAAAGAAAC 60.030 45.455 0.00 0.00 45.93 2.78
6092 8498 1.890489 GTATGGGCAAAAGAAACGGGT 59.110 47.619 0.00 0.00 0.00 5.28
6119 8525 1.247567 CCAGCCCGACTCAAACAAAT 58.752 50.000 0.00 0.00 0.00 2.32
6120 8526 2.224670 ACCAGCCCGACTCAAACAAATA 60.225 45.455 0.00 0.00 0.00 1.40
6129 8535 5.050904 CCGACTCAAACAAATACACGTAACA 60.051 40.000 0.00 0.00 0.00 2.41
6242 8668 5.189928 TGTTGTAGAACTGTGGTGTTTCAT 58.810 37.500 4.21 0.00 32.79 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 8.934023 AGAAGGGATGTATCTAGAACTTCTAG 57.066 38.462 16.91 16.91 45.99 2.43
10 11 8.729047 TCTAGAAGGGATGTATCTAGAACTTCT 58.271 37.037 8.80 16.27 45.21 2.85
11 12 8.927675 TCTAGAAGGGATGTATCTAGAACTTC 57.072 38.462 8.80 4.77 45.21 3.01
17 18 9.349713 GGATGTATCTAGAAGGGATGTATCTAG 57.650 40.741 0.00 3.26 42.52 2.43
18 19 8.282982 GGGATGTATCTAGAAGGGATGTATCTA 58.717 40.741 0.00 0.00 0.00 1.98
19 20 7.129425 GGGATGTATCTAGAAGGGATGTATCT 58.871 42.308 0.00 0.00 0.00 1.98
20 21 6.325286 GGGGATGTATCTAGAAGGGATGTATC 59.675 46.154 0.00 0.00 0.00 2.24
21 22 6.009388 AGGGGATGTATCTAGAAGGGATGTAT 60.009 42.308 0.00 0.00 0.00 2.29
22 23 5.318889 AGGGGATGTATCTAGAAGGGATGTA 59.681 44.000 0.00 0.00 0.00 2.29
23 24 4.110426 AGGGGATGTATCTAGAAGGGATGT 59.890 45.833 0.00 0.00 0.00 3.06
24 25 4.693420 AGGGGATGTATCTAGAAGGGATG 58.307 47.826 0.00 0.00 0.00 3.51
25 26 5.376653 AAGGGGATGTATCTAGAAGGGAT 57.623 43.478 0.00 0.00 0.00 3.85
26 27 4.852991 AAGGGGATGTATCTAGAAGGGA 57.147 45.455 0.00 0.00 0.00 4.20
27 28 5.913946 AAAAGGGGATGTATCTAGAAGGG 57.086 43.478 0.00 0.00 0.00 3.95
28 29 7.237679 TGGATAAAAGGGGATGTATCTAGAAGG 59.762 40.741 0.00 0.00 0.00 3.46
29 30 8.207350 TGGATAAAAGGGGATGTATCTAGAAG 57.793 38.462 0.00 0.00 0.00 2.85
30 31 8.757307 ATGGATAAAAGGGGATGTATCTAGAA 57.243 34.615 0.00 0.00 0.00 2.10
31 32 8.757307 AATGGATAAAAGGGGATGTATCTAGA 57.243 34.615 0.00 0.00 0.00 2.43
32 33 9.813826 AAAATGGATAAAAGGGGATGTATCTAG 57.186 33.333 0.00 0.00 0.00 2.43
33 34 9.586732 CAAAATGGATAAAAGGGGATGTATCTA 57.413 33.333 0.00 0.00 0.00 1.98
34 35 8.288812 TCAAAATGGATAAAAGGGGATGTATCT 58.711 33.333 0.00 0.00 0.00 1.98
35 36 8.477419 TCAAAATGGATAAAAGGGGATGTATC 57.523 34.615 0.00 0.00 0.00 2.24
36 37 8.873144 CATCAAAATGGATAAAAGGGGATGTAT 58.127 33.333 0.00 0.00 0.00 2.29
37 38 8.064389 TCATCAAAATGGATAAAAGGGGATGTA 58.936 33.333 0.00 0.00 33.42 2.29
38 39 6.902416 TCATCAAAATGGATAAAAGGGGATGT 59.098 34.615 0.00 0.00 33.42 3.06
39 40 7.147689 TGTCATCAAAATGGATAAAAGGGGATG 60.148 37.037 0.00 0.00 33.42 3.51
40 41 6.902416 TGTCATCAAAATGGATAAAAGGGGAT 59.098 34.615 0.00 0.00 33.42 3.85
41 42 6.259893 TGTCATCAAAATGGATAAAAGGGGA 58.740 36.000 0.00 0.00 33.42 4.81
42 43 6.543430 TGTCATCAAAATGGATAAAAGGGG 57.457 37.500 0.00 0.00 33.42 4.79
43 44 7.614494 ACTTGTCATCAAAATGGATAAAAGGG 58.386 34.615 0.00 0.00 33.42 3.95
50 51 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
51 52 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
52 53 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
53 54 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
54 55 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
55 56 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
56 57 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
57 58 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
58 59 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
59 60 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
60 61 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
61 62 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
62 63 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
63 64 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
64 65 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
65 66 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
66 67 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
67 68 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
68 69 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
69 70 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
70 71 1.753073 GATACTCCCTCCGTCCGAAAA 59.247 52.381 0.00 0.00 0.00 2.29
71 72 1.064166 AGATACTCCCTCCGTCCGAAA 60.064 52.381 0.00 0.00 0.00 3.46
72 73 0.549950 AGATACTCCCTCCGTCCGAA 59.450 55.000 0.00 0.00 0.00 4.30
73 74 0.549950 AAGATACTCCCTCCGTCCGA 59.450 55.000 0.00 0.00 0.00 4.55
74 75 2.152830 CTAAGATACTCCCTCCGTCCG 58.847 57.143 0.00 0.00 0.00 4.79
75 76 2.107901 TCCTAAGATACTCCCTCCGTCC 59.892 54.545 0.00 0.00 0.00 4.79
76 77 3.505480 TCCTAAGATACTCCCTCCGTC 57.495 52.381 0.00 0.00 0.00 4.79
77 78 3.768878 CATCCTAAGATACTCCCTCCGT 58.231 50.000 0.00 0.00 0.00 4.69
78 79 2.494073 GCATCCTAAGATACTCCCTCCG 59.506 54.545 0.00 0.00 0.00 4.63
79 80 3.767131 GAGCATCCTAAGATACTCCCTCC 59.233 52.174 0.00 0.00 37.05 4.30
80 81 4.672899 AGAGCATCCTAAGATACTCCCTC 58.327 47.826 0.00 0.00 41.98 4.30
81 82 4.757997 AGAGCATCCTAAGATACTCCCT 57.242 45.455 0.00 0.00 41.98 4.20
82 83 4.020662 CCAAGAGCATCCTAAGATACTCCC 60.021 50.000 0.00 0.00 41.98 4.30
83 84 4.562552 GCCAAGAGCATCCTAAGATACTCC 60.563 50.000 0.00 0.00 41.98 3.85
84 85 4.562552 GGCCAAGAGCATCCTAAGATACTC 60.563 50.000 0.00 0.00 46.50 2.59
85 86 3.326297 GGCCAAGAGCATCCTAAGATACT 59.674 47.826 0.00 0.00 46.50 2.12
151 152 4.321452 CCCATTTGACCAAAGATGACACAG 60.321 45.833 1.57 0.00 33.32 3.66
156 157 2.178580 GGCCCATTTGACCAAAGATGA 58.821 47.619 0.00 0.00 33.32 2.92
157 158 1.207811 GGGCCCATTTGACCAAAGATG 59.792 52.381 19.95 0.00 33.32 2.90
158 159 1.079323 AGGGCCCATTTGACCAAAGAT 59.921 47.619 27.56 0.00 33.32 2.40
214 235 4.864334 CTGGGGCGGCTCATCCAC 62.864 72.222 13.83 0.00 34.01 4.02
253 274 2.930385 AAGCCTGCATGGATCCGACG 62.930 60.000 7.39 0.00 38.35 5.12
276 297 0.108186 TGTCACATGGCCTTCGCTAG 60.108 55.000 3.32 0.00 34.44 3.42
278 299 1.073025 TTGTCACATGGCCTTCGCT 59.927 52.632 3.32 0.00 34.44 4.93
377 399 2.627839 TTTTCCGAGCCCCCGTGTTT 62.628 55.000 0.00 0.00 0.00 2.83
496 518 8.845227 TGATAACAATTTGTTCTTAAGCAGTGA 58.155 29.630 17.64 0.00 40.22 3.41
497 519 8.905702 GTGATAACAATTTGTTCTTAAGCAGTG 58.094 33.333 17.64 0.00 40.22 3.66
498 520 8.629158 TGTGATAACAATTTGTTCTTAAGCAGT 58.371 29.630 17.64 0.00 40.22 4.40
499 521 9.462174 TTGTGATAACAATTTGTTCTTAAGCAG 57.538 29.630 17.64 0.00 40.22 4.24
500 522 9.243637 GTTGTGATAACAATTTGTTCTTAAGCA 57.756 29.630 17.64 7.26 40.22 3.91
523 561 9.565213 GAGGTGATTAGAATTCAAAGATTGTTG 57.435 33.333 8.44 0.00 0.00 3.33
525 563 9.171877 GAGAGGTGATTAGAATTCAAAGATTGT 57.828 33.333 8.44 0.00 0.00 2.71
567 605 0.528033 TTTGTTCGCGAGACACCGAA 60.528 50.000 19.07 11.23 41.84 4.30
577 615 0.591236 CAACCACAGGTTTGTTCGCG 60.591 55.000 0.00 0.00 44.33 5.87
584 622 2.470057 AACCATCCAACCACAGGTTT 57.530 45.000 0.00 0.00 44.33 3.27
604 642 3.067461 GCACGAGATATCACTGTCCTTCT 59.933 47.826 5.32 0.00 0.00 2.85
605 643 3.376540 GCACGAGATATCACTGTCCTTC 58.623 50.000 5.32 0.00 0.00 3.46
621 659 2.355837 GAACTCTGGTGCGCACGA 60.356 61.111 32.35 28.25 0.00 4.35
627 665 4.105486 GTTTGAAACTTGAACTCTGGTGC 58.895 43.478 0.00 0.00 0.00 5.01
694 732 6.619446 GCTCATTTCTATGAACACATATCGCC 60.619 42.308 0.00 0.00 40.17 5.54
703 741 5.006649 GCACATACGCTCATTTCTATGAACA 59.993 40.000 0.00 0.00 40.17 3.18
708 746 3.717707 ACGCACATACGCTCATTTCTAT 58.282 40.909 0.00 0.00 36.19 1.98
713 751 2.821546 ACATACGCACATACGCTCATT 58.178 42.857 0.00 0.00 36.19 2.57
719 757 2.338520 CGCTCATACATACGCACATACG 59.661 50.000 0.00 0.00 39.50 3.06
761 799 9.942850 ATTTGGAGACCGAATTTGAATTATTTT 57.057 25.926 0.00 0.00 34.17 1.82
765 803 7.609918 TCTGATTTGGAGACCGAATTTGAATTA 59.390 33.333 4.96 0.00 37.71 1.40
768 806 5.181245 GTCTGATTTGGAGACCGAATTTGAA 59.819 40.000 4.96 0.00 37.71 2.69
769 807 4.695455 GTCTGATTTGGAGACCGAATTTGA 59.305 41.667 4.96 4.44 37.71 2.69
774 813 1.616865 ACGTCTGATTTGGAGACCGAA 59.383 47.619 0.00 0.00 37.18 4.30
881 1552 4.376413 GCTATGAAAAGTCGTCACACACTG 60.376 45.833 0.00 0.00 0.00 3.66
961 1635 3.767230 CGCGCGTGTTCCTGTCTG 61.767 66.667 24.19 0.00 0.00 3.51
1177 1851 4.489771 CGGGAAGCGGAAGGGCAT 62.490 66.667 0.00 0.00 34.64 4.40
1491 2165 0.320421 GTCACCTCTTGGCACGCTTA 60.320 55.000 0.00 0.00 36.63 3.09
1541 2215 1.619827 CTACCGACCAACCACCAACTA 59.380 52.381 0.00 0.00 0.00 2.24
1738 2412 5.300792 GGATTCAAGACCACTAACACCAAAA 59.699 40.000 0.00 0.00 0.00 2.44
1815 2489 1.280133 TCAGAAGGAAGCCCTGTGATG 59.720 52.381 0.00 0.00 43.48 3.07
1822 2496 1.157585 GAAACGTCAGAAGGAAGCCC 58.842 55.000 0.00 0.00 0.00 5.19
1908 2622 5.743026 TTCGAACAATGACAGCAACTTAA 57.257 34.783 0.00 0.00 0.00 1.85
1949 2664 4.164843 TGCCCTTCGCTTATTTAGGAAT 57.835 40.909 0.00 0.00 38.78 3.01
1953 2668 2.554032 CCCATGCCCTTCGCTTATTTAG 59.446 50.000 0.00 0.00 38.78 1.85
2075 2790 8.081633 CACACAAGCTTTATTGAATAAGTTGGA 58.918 33.333 0.00 0.00 34.20 3.53
2090 2805 4.523943 TCAAAGATATGCCACACAAGCTTT 59.476 37.500 0.00 0.00 30.44 3.51
2134 2849 6.890293 AGTGAGAGTAGGAAATGGTTAATCC 58.110 40.000 0.00 0.00 0.00 3.01
2200 2917 9.184523 GACTAGGTATTGCATAGATAGATCACT 57.815 37.037 0.37 0.00 35.25 3.41
2223 2940 8.034313 ACCCTATATCACAAATACACATGACT 57.966 34.615 0.00 0.00 0.00 3.41
2224 2941 8.677148 AACCCTATATCACAAATACACATGAC 57.323 34.615 0.00 0.00 0.00 3.06
2225 2942 9.693739 AAAACCCTATATCACAAATACACATGA 57.306 29.630 0.00 0.00 0.00 3.07
2226 2943 9.950680 GAAAACCCTATATCACAAATACACATG 57.049 33.333 0.00 0.00 0.00 3.21
2227 2944 9.131791 GGAAAACCCTATATCACAAATACACAT 57.868 33.333 0.00 0.00 0.00 3.21
2228 2945 7.558444 GGGAAAACCCTATATCACAAATACACA 59.442 37.037 0.00 0.00 34.51 3.72
2229 2946 7.778382 AGGGAAAACCCTATATCACAAATACAC 59.222 37.037 5.97 0.00 41.63 2.90
2230 2947 7.777910 CAGGGAAAACCCTATATCACAAATACA 59.222 37.037 7.53 0.00 41.63 2.29
2231 2948 7.778382 ACAGGGAAAACCCTATATCACAAATAC 59.222 37.037 7.53 0.00 41.63 1.89
2232 2949 7.878495 ACAGGGAAAACCCTATATCACAAATA 58.122 34.615 7.53 0.00 41.63 1.40
2233 2950 6.741724 ACAGGGAAAACCCTATATCACAAAT 58.258 36.000 7.53 0.00 41.63 2.32
2234 2951 6.147437 ACAGGGAAAACCCTATATCACAAA 57.853 37.500 7.53 0.00 41.63 2.83
2235 2952 5.789574 ACAGGGAAAACCCTATATCACAA 57.210 39.130 7.53 0.00 41.63 3.33
2236 2953 5.163237 GCTACAGGGAAAACCCTATATCACA 60.163 44.000 7.53 0.00 41.63 3.58
2237 2954 5.163237 TGCTACAGGGAAAACCCTATATCAC 60.163 44.000 7.53 0.00 41.63 3.06
2238 2955 4.972568 TGCTACAGGGAAAACCCTATATCA 59.027 41.667 7.53 0.52 41.63 2.15
2239 2956 5.071923 ACTGCTACAGGGAAAACCCTATATC 59.928 44.000 7.53 0.00 41.63 1.63
2240 2957 4.975794 ACTGCTACAGGGAAAACCCTATAT 59.024 41.667 7.53 0.10 41.63 0.86
2241 2958 4.368067 ACTGCTACAGGGAAAACCCTATA 58.632 43.478 7.53 0.25 41.63 1.31
2242 2959 3.190439 ACTGCTACAGGGAAAACCCTAT 58.810 45.455 7.53 0.00 41.63 2.57
2243 2960 2.627933 ACTGCTACAGGGAAAACCCTA 58.372 47.619 7.53 0.00 41.63 3.53
2244 2961 1.446016 ACTGCTACAGGGAAAACCCT 58.554 50.000 1.53 1.53 41.63 4.34
2245 2962 1.886542 CAACTGCTACAGGGAAAACCC 59.113 52.381 0.00 0.00 41.63 4.11
2246 2963 1.886542 CCAACTGCTACAGGGAAAACC 59.113 52.381 0.00 0.00 35.51 3.27
2247 2964 2.583143 ACCAACTGCTACAGGGAAAAC 58.417 47.619 0.00 0.00 35.51 2.43
2248 2965 3.306472 AACCAACTGCTACAGGGAAAA 57.694 42.857 0.00 0.00 35.51 2.29
2249 2966 3.136809 TGTAACCAACTGCTACAGGGAAA 59.863 43.478 0.00 0.00 35.51 3.13
2250 2967 2.706723 TGTAACCAACTGCTACAGGGAA 59.293 45.455 0.00 0.00 35.51 3.97
2251 2968 2.331166 TGTAACCAACTGCTACAGGGA 58.669 47.619 0.00 0.00 35.51 4.20
2252 2969 2.851263 TGTAACCAACTGCTACAGGG 57.149 50.000 0.00 0.00 35.51 4.45
2253 2970 4.072131 ACAATGTAACCAACTGCTACAGG 58.928 43.478 0.00 0.00 35.51 4.00
2254 2971 5.689383 AACAATGTAACCAACTGCTACAG 57.311 39.130 0.00 0.00 37.52 2.74
2255 2972 5.009210 GGAAACAATGTAACCAACTGCTACA 59.991 40.000 4.38 0.00 0.00 2.74
2256 2973 5.009210 TGGAAACAATGTAACCAACTGCTAC 59.991 40.000 8.55 0.00 37.44 3.58
2257 2974 5.009210 GTGGAAACAATGTAACCAACTGCTA 59.991 40.000 11.71 0.00 46.06 3.49
2258 2975 3.957497 TGGAAACAATGTAACCAACTGCT 59.043 39.130 8.55 0.00 37.44 4.24
2259 2976 4.048504 GTGGAAACAATGTAACCAACTGC 58.951 43.478 11.71 0.00 46.06 4.40
2260 2977 4.201970 ACGTGGAAACAATGTAACCAACTG 60.202 41.667 11.71 8.38 46.06 3.16
2261 2978 3.949113 ACGTGGAAACAATGTAACCAACT 59.051 39.130 11.71 0.30 46.06 3.16
2262 2979 4.284485 GACGTGGAAACAATGTAACCAAC 58.716 43.478 11.71 6.98 46.06 3.77
2263 2980 3.002451 CGACGTGGAAACAATGTAACCAA 59.998 43.478 11.71 0.00 46.06 3.67
2264 2981 2.544686 CGACGTGGAAACAATGTAACCA 59.455 45.455 0.00 7.23 46.06 3.67
2404 3124 4.680171 AACTACATGGCGCTAAAAAGAC 57.320 40.909 7.64 0.00 0.00 3.01
2413 3133 6.899114 AGCTTATTAAATAACTACATGGCGC 58.101 36.000 0.00 0.00 0.00 6.53
2414 3134 8.311650 AGAGCTTATTAAATAACTACATGGCG 57.688 34.615 0.00 0.00 0.00 5.69
2472 3192 1.501741 CAACAAACCGCCATCTCCG 59.498 57.895 0.00 0.00 0.00 4.63
2512 3232 1.762708 ATGGGGCGACACCATAAAAG 58.237 50.000 11.30 0.00 46.52 2.27
2555 3275 2.245159 TCTTGCAGATCATTAGCGGG 57.755 50.000 0.00 0.00 0.00 6.13
2593 3313 9.878599 CAAATTAAAAAGTCGATCACAGTAAGT 57.121 29.630 0.00 0.00 0.00 2.24
2594 3314 9.878599 ACAAATTAAAAAGTCGATCACAGTAAG 57.121 29.630 0.00 0.00 0.00 2.34
2597 3317 8.621286 AGAACAAATTAAAAAGTCGATCACAGT 58.379 29.630 0.00 0.00 0.00 3.55
2598 3318 9.450807 AAGAACAAATTAAAAAGTCGATCACAG 57.549 29.630 0.00 0.00 0.00 3.66
2599 3319 9.796120 AAAGAACAAATTAAAAAGTCGATCACA 57.204 25.926 0.00 0.00 0.00 3.58
2654 3374 7.780008 TTAATGTACACGAAACAGGGATATG 57.220 36.000 0.00 0.00 0.00 1.78
2766 3486 4.116238 GCCTGATACTAGAAAGCTGTGTC 58.884 47.826 0.00 0.00 0.00 3.67
2786 3506 6.486253 TTATCTATTGCAATCAAGATCGCC 57.514 37.500 22.30 0.00 35.37 5.54
2850 3570 6.597614 CAAGCTAAAACAACTTGCAAAAACA 58.402 32.000 0.00 0.00 34.90 2.83
2874 3594 7.411588 CCGTCCTATAATATAAGACGCTTTTGC 60.412 40.741 20.19 0.00 46.66 3.68
2875 3595 7.811236 TCCGTCCTATAATATAAGACGCTTTTG 59.189 37.037 20.19 10.37 46.66 2.44
2880 3600 5.221009 CCCTCCGTCCTATAATATAAGACGC 60.221 48.000 20.19 0.00 46.66 5.19
2882 3602 7.118060 ACTCCCTCCGTCCTATAATATAAGAC 58.882 42.308 0.12 0.12 0.00 3.01
2890 3610 4.803329 AAGTACTCCCTCCGTCCTATAA 57.197 45.455 0.00 0.00 0.00 0.98
2894 3614 2.322339 AAAAGTACTCCCTCCGTCCT 57.678 50.000 0.00 0.00 0.00 3.85
2953 3675 7.660030 TCCTATGTGAAGTTCTGATACATCA 57.340 36.000 9.21 0.00 34.22 3.07
3121 3848 7.011950 TCTGTTCGCTAGAATTCTGAAACAAAA 59.988 33.333 18.47 10.05 38.80 2.44
3181 3908 9.227490 CTTCCGCTCTAATTCTGTTATATATCG 57.773 37.037 0.00 0.00 0.00 2.92
3250 3977 8.402798 TGAAAGTTTACCTGAAATAGCATCAA 57.597 30.769 0.00 0.00 0.00 2.57
3254 3981 6.945435 TGGATGAAAGTTTACCTGAAATAGCA 59.055 34.615 0.00 0.00 0.00 3.49
3352 4079 1.826340 GCACCGAGGCCCCAAATTTT 61.826 55.000 0.00 0.00 0.00 1.82
3492 4224 3.634397 ATGCAGCACACTACCTGTAAT 57.366 42.857 0.00 0.00 0.00 1.89
3553 4300 4.248058 GTTCTTTTCAATGCAATCCCCAG 58.752 43.478 0.00 0.00 0.00 4.45
3555 4302 3.007831 TGGTTCTTTTCAATGCAATCCCC 59.992 43.478 0.00 0.00 0.00 4.81
3567 4314 6.641169 ATCTTTCTGTTCCTGGTTCTTTTC 57.359 37.500 0.00 0.00 0.00 2.29
3631 4602 1.616628 GTCACCCCAGGACCAGGAT 60.617 63.158 4.06 0.00 0.00 3.24
3632 4603 2.203938 GTCACCCCAGGACCAGGA 60.204 66.667 4.06 0.00 0.00 3.86
3633 4604 2.203998 AGTCACCCCAGGACCAGG 60.204 66.667 0.00 0.00 35.89 4.45
3634 4605 0.544357 TACAGTCACCCCAGGACCAG 60.544 60.000 0.00 0.00 35.89 4.00
3635 4606 0.118346 ATACAGTCACCCCAGGACCA 59.882 55.000 0.00 0.00 35.89 4.02
3636 4607 0.541863 CATACAGTCACCCCAGGACC 59.458 60.000 0.00 0.00 35.89 4.46
3678 4649 4.570663 GTCTCCGGCCGTGATCCG 62.571 72.222 26.12 7.54 46.05 4.18
3681 4652 2.501128 CATGTCTCCGGCCGTGAT 59.499 61.111 26.12 5.05 0.00 3.06
3682 4653 3.770040 CCATGTCTCCGGCCGTGA 61.770 66.667 26.12 18.88 0.00 4.35
3708 4679 2.572095 TAGATTGCAGTCGCCCACCG 62.572 60.000 3.29 0.00 37.32 4.94
3757 4728 2.848887 CACAAGCGAGAATAGTGAGTCG 59.151 50.000 0.00 0.00 35.51 4.18
3759 4730 4.021894 ACTTCACAAGCGAGAATAGTGAGT 60.022 41.667 0.00 0.00 39.97 3.41
3775 4746 1.948104 CGTTCCTCCACAACTTCACA 58.052 50.000 0.00 0.00 0.00 3.58
3799 4770 1.227823 CAACAGCCCACTGGTCGAA 60.228 57.895 0.00 0.00 41.03 3.71
3809 4780 2.820037 GCCTACTCGCAACAGCCC 60.820 66.667 0.00 0.00 0.00 5.19
3816 4787 3.774528 CTGCTGGGCCTACTCGCA 61.775 66.667 4.53 1.27 0.00 5.10
3831 4802 1.463674 AGGAAAATAAGGCGGCACTG 58.536 50.000 13.08 0.00 0.00 3.66
3970 4942 0.714439 GAAACTGTAGAAGGACGCGC 59.286 55.000 5.73 0.00 0.00 6.86
3979 4951 7.040617 CGCTTATATACCTGAGGAAACTGTAGA 60.041 40.741 4.99 0.00 44.43 2.59
3989 4961 3.079578 TCGTCCGCTTATATACCTGAGG 58.920 50.000 0.00 0.00 0.00 3.86
3993 4965 2.165998 GGGTCGTCCGCTTATATACCT 58.834 52.381 0.00 0.00 33.83 3.08
3994 4966 1.888512 TGGGTCGTCCGCTTATATACC 59.111 52.381 0.00 0.00 38.76 2.73
3999 4971 3.090219 GCCTGGGTCGTCCGCTTAT 62.090 63.158 0.00 0.00 38.76 1.73
4000 4972 3.766691 GCCTGGGTCGTCCGCTTA 61.767 66.667 0.00 0.00 38.76 3.09
4060 5032 6.809869 ACCAGAGGAAAAGACAATGAAAAAG 58.190 36.000 0.00 0.00 0.00 2.27
4069 5041 1.144913 CCCCAACCAGAGGAAAAGACA 59.855 52.381 0.00 0.00 0.00 3.41
4086 5058 1.455032 CCCAAAATCGTAGGGCCCC 60.455 63.158 21.43 2.17 35.44 5.80
4120 5092 0.250901 AATGAGGGTGTGTGACCTGC 60.251 55.000 0.00 0.00 45.33 4.85
4127 5099 1.374947 CCCGACAATGAGGGTGTGT 59.625 57.895 9.64 0.00 42.67 3.72
4139 5111 2.525629 TGAGAACCAGGCCCGACA 60.526 61.111 0.00 0.00 0.00 4.35
4218 5190 3.929610 GCTGGCTTCTCAGTACAGTTTAG 59.070 47.826 0.00 0.00 37.12 1.85
4250 5222 1.531149 GTTGACACCGACTTCCATGTG 59.469 52.381 0.00 0.00 34.92 3.21
4281 5253 5.126222 TGGTGATTCACTAAGTCTAGAGCAG 59.874 44.000 16.02 0.00 34.40 4.24
4308 5280 7.936496 TCAGTTCAAGTAAAATATCATGGCA 57.064 32.000 0.00 0.00 0.00 4.92
4323 5295 4.552184 CGATAGCATGTGCATCAGTTCAAG 60.552 45.833 7.83 0.00 45.16 3.02
4386 5358 8.190784 GGCACTAACACTTCATATGCTTTATTT 58.809 33.333 0.00 0.00 0.00 1.40
4461 5434 0.615331 GCAGGACATCACCCTTCAGA 59.385 55.000 0.00 0.00 0.00 3.27
4474 5447 0.682209 ATTGCCTCATGGTGCAGGAC 60.682 55.000 9.48 0.00 38.95 3.85
4475 5448 0.918258 TATTGCCTCATGGTGCAGGA 59.082 50.000 9.48 0.00 38.95 3.86
4565 5538 1.553248 CCCCGGTCAGAACTTGATACA 59.447 52.381 0.00 0.00 38.29 2.29
4570 5543 1.672356 CAGCCCCGGTCAGAACTTG 60.672 63.158 0.00 0.00 0.00 3.16
4582 5555 1.639722 AATGTAAAACCCACAGCCCC 58.360 50.000 0.00 0.00 0.00 5.80
4585 5558 4.877282 TGCTAAAATGTAAAACCCACAGC 58.123 39.130 0.00 0.00 0.00 4.40
4587 5560 6.412362 ACATGCTAAAATGTAAAACCCACA 57.588 33.333 0.00 0.00 39.01 4.17
4588 5561 7.151976 AGAACATGCTAAAATGTAAAACCCAC 58.848 34.615 0.00 0.00 39.89 4.61
4658 5631 8.448008 TCTGCCACCAAGATATTATTCCTTTAT 58.552 33.333 0.00 0.00 0.00 1.40
4659 5632 7.811282 TCTGCCACCAAGATATTATTCCTTTA 58.189 34.615 0.00 0.00 0.00 1.85
4660 5633 6.672593 TCTGCCACCAAGATATTATTCCTTT 58.327 36.000 0.00 0.00 0.00 3.11
4707 5680 7.856415 ACCTAATCTTGAGCTCTGTATTTTCT 58.144 34.615 16.19 0.00 0.00 2.52
4937 5910 9.965824 TGTTATTTCTGTTCAGATTCTTTTTCC 57.034 29.630 3.28 0.00 0.00 3.13
4950 5923 9.143631 AGCTGCAAAAATATGTTATTTCTGTTC 57.856 29.630 1.02 0.00 0.00 3.18
5018 5991 3.866066 GCTTTGTCATCTCACCTGTAGCA 60.866 47.826 0.00 0.00 0.00 3.49
5162 6135 0.753111 GGACATTGGGATGAGGTGGC 60.753 60.000 0.00 0.00 36.73 5.01
5373 6347 0.732571 ACGAGTGTTGTTTGCAGGTG 59.267 50.000 0.00 0.00 0.00 4.00
5623 6605 6.091986 CCAAACATTCGTAAATTCCAAATGGG 59.908 38.462 0.00 0.00 32.83 4.00
5666 7954 6.315144 TGGTATTCTCATTACAACACCGAATG 59.685 38.462 0.00 0.00 32.85 2.67
5690 7978 5.277974 CGCTCAAACCCCAATCTAATACATG 60.278 44.000 0.00 0.00 0.00 3.21
5702 7990 0.605319 GTGTGATCGCTCAAACCCCA 60.605 55.000 7.94 0.00 34.05 4.96
5837 8125 4.899239 CCGCCGTGAGAGGATGGC 62.899 72.222 0.00 0.00 43.64 4.40
5950 8338 0.472044 GAGATCTTCCTTGGCCTCCC 59.528 60.000 3.32 0.00 0.00 4.30
6092 8498 0.034896 GAGTCGGGCTGGTTTCAGAA 59.965 55.000 0.00 0.00 43.49 3.02
6119 8525 6.260377 CCGTCTTCTGATTATGTTACGTGTA 58.740 40.000 0.00 0.00 0.00 2.90
6120 8526 5.100259 CCGTCTTCTGATTATGTTACGTGT 58.900 41.667 0.00 0.00 0.00 4.49
6151 8573 1.283487 GTAACGTTTGGTTGGCGGG 59.717 57.895 5.91 0.00 39.75 6.13
6153 8575 2.409152 AATGTAACGTTTGGTTGGCG 57.591 45.000 5.91 0.00 39.75 5.69
6154 8576 4.806775 AGAAAAATGTAACGTTTGGTTGGC 59.193 37.500 5.91 0.00 39.75 4.52
6155 8577 5.808030 ACAGAAAAATGTAACGTTTGGTTGG 59.192 36.000 5.91 0.00 39.75 3.77
6156 8578 6.879188 ACAGAAAAATGTAACGTTTGGTTG 57.121 33.333 5.91 0.00 39.75 3.77
6158 8580 6.528774 GTCAACAGAAAAATGTAACGTTTGGT 59.471 34.615 5.91 0.00 31.70 3.67
6160 8582 7.499438 TGTCAACAGAAAAATGTAACGTTTG 57.501 32.000 5.91 0.00 31.70 2.93
6163 8585 5.685511 GCATGTCAACAGAAAAATGTAACGT 59.314 36.000 0.00 0.00 31.70 3.99
6198 8624 5.883661 ACAATTTGATGCTTGTAGATTCCG 58.116 37.500 2.79 0.00 33.96 4.30
6285 8711 8.774586 AGTTGTAGACATGTGTAAATTGTCTTC 58.225 33.333 1.15 6.14 45.88 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.