Multiple sequence alignment - TraesCS2B01G122000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G122000 chr2B 100.000 2384 0 0 1 2384 89490389 89492772 0.000000e+00 4403.0
1 TraesCS2B01G122000 chr2B 79.206 1260 191 42 979 2209 709569013 709567796 0.000000e+00 809.0
2 TraesCS2B01G122000 chr2B 85.861 389 43 6 237 619 89499903 89500285 1.030000e-108 403.0
3 TraesCS2B01G122000 chr2B 84.767 407 54 5 1602 2008 709252397 709251999 3.690000e-108 401.0
4 TraesCS2B01G122000 chr2B 85.030 167 21 4 780 944 54043491 54043327 1.470000e-37 167.0
5 TraesCS2B01G122000 chr6D 80.790 1291 187 24 944 2209 33895755 33897009 0.000000e+00 953.0
6 TraesCS2B01G122000 chr6D 79.459 998 166 23 944 1917 8552080 8551098 0.000000e+00 671.0
7 TraesCS2B01G122000 chr6D 84.228 596 58 14 1615 2209 8567269 8566709 4.480000e-152 547.0
8 TraesCS2B01G122000 chr6D 87.719 342 33 8 283 623 8899516 8899849 7.990000e-105 390.0
9 TraesCS2B01G122000 chr6D 85.630 341 40 7 289 622 8552801 8552463 1.360000e-92 350.0
10 TraesCS2B01G122000 chr6D 79.065 492 63 16 1880 2364 8917031 8917489 3.850000e-78 302.0
11 TraesCS2B01G122000 chr6D 76.774 465 97 9 945 1403 7404258 7403799 1.410000e-62 250.0
12 TraesCS2B01G122000 chr6D 73.958 672 130 28 759 1393 34001571 34002234 1.840000e-56 230.0
13 TraesCS2B01G122000 chr6D 95.122 41 1 1 1 40 90133486 90133526 1.980000e-06 63.9
14 TraesCS2B01G122000 chr5B 80.918 1263 172 29 979 2218 556794993 556793777 0.000000e+00 933.0
15 TraesCS2B01G122000 chr5B 78.452 840 143 23 982 1795 621237523 621236696 4.540000e-142 514.0
16 TraesCS2B01G122000 chr5B 83.482 448 53 12 1933 2375 621236571 621236140 4.770000e-107 398.0
17 TraesCS2B01G122000 chr5B 77.532 316 62 7 631 946 621237906 621237600 5.230000e-42 182.0
18 TraesCS2B01G122000 chr5B 76.899 316 62 9 631 945 556795373 556795068 4.080000e-38 169.0
19 TraesCS2B01G122000 chr5B 100.000 37 0 0 1 37 576275967 576276003 4.250000e-08 69.4
20 TraesCS2B01G122000 chr6B 80.367 1309 184 36 940 2218 15397238 15395973 0.000000e+00 926.0
21 TraesCS2B01G122000 chr6B 79.005 1286 190 40 945 2218 670591982 670590765 0.000000e+00 806.0
22 TraesCS2B01G122000 chr6B 80.313 1087 178 19 944 2008 15714501 15713429 0.000000e+00 789.0
23 TraesCS2B01G122000 chr6B 79.053 993 172 21 944 1914 16433863 16434841 0.000000e+00 649.0
24 TraesCS2B01G122000 chr6B 78.246 878 152 24 944 1795 16321301 16322165 5.840000e-146 527.0
25 TraesCS2B01G122000 chr6B 79.487 780 99 26 1599 2363 90940915 90941648 4.580000e-137 497.0
26 TraesCS2B01G122000 chr6B 81.609 609 84 12 1599 2194 15215453 15214860 1.660000e-131 479.0
27 TraesCS2B01G122000 chr6B 87.179 351 38 4 279 623 52568259 52567910 2.220000e-105 392.0
28 TraesCS2B01G122000 chr6B 76.684 772 131 32 950 1695 15234130 15233382 1.340000e-102 383.0
29 TraesCS2B01G122000 chr6B 84.262 413 42 19 219 623 16428943 16429340 4.810000e-102 381.0
30 TraesCS2B01G122000 chr6B 86.095 338 38 7 286 623 65175122 65174794 2.910000e-94 355.0
31 TraesCS2B01G122000 chr6B 78.043 460 97 4 945 1402 41409665 41409208 1.080000e-73 287.0
32 TraesCS2B01G122000 chr6B 79.052 401 78 5 965 1362 65158340 65157943 1.090000e-68 270.0
33 TraesCS2B01G122000 chr6B 76.940 464 95 10 944 1401 14622019 14621562 1.090000e-63 254.0
34 TraesCS2B01G122000 chr6B 76.489 319 57 15 631 946 15381158 15380855 8.820000e-35 158.0
35 TraesCS2B01G122000 chr6B 75.915 328 66 12 622 946 14323905 14324222 3.170000e-34 156.0
36 TraesCS2B01G122000 chr6A 78.672 994 170 26 944 1914 9474795 9475769 7.240000e-175 623.0
37 TraesCS2B01G122000 chr6A 83.565 432 45 12 198 623 35581674 35581263 4.810000e-102 381.0
38 TraesCS2B01G122000 chr6A 79.044 272 51 6 1094 1362 35568283 35568015 5.230000e-42 182.0
39 TraesCS2B01G122000 chr6A 78.182 220 45 2 660 879 8201915 8201699 1.150000e-28 137.0
40 TraesCS2B01G122000 chr6A 97.222 36 1 0 1 36 45745396 45745431 7.120000e-06 62.1
41 TraesCS2B01G122000 chr5D 85.476 420 45 8 1959 2375 499863241 499862835 7.880000e-115 424.0
42 TraesCS2B01G122000 chr5D 77.215 316 63 7 631 946 499864713 499864407 2.440000e-40 176.0
43 TraesCS2B01G122000 chr7A 76.269 788 149 16 626 1384 162578220 162578998 3.720000e-103 385.0
44 TraesCS2B01G122000 chr7D 75.888 788 152 17 626 1384 161391026 161391804 3.740000e-98 368.0
45 TraesCS2B01G122000 chr7D 90.196 51 4 1 2 52 443160659 443160708 5.500000e-07 65.8
46 TraesCS2B01G122000 chr1B 85.278 360 43 8 273 623 630644726 630645084 1.740000e-96 363.0
47 TraesCS2B01G122000 chr3A 85.112 356 39 12 279 623 45937989 45937637 3.770000e-93 351.0
48 TraesCS2B01G122000 chr7B 75.508 788 152 25 626 1384 123655949 123656724 4.880000e-92 348.0
49 TraesCS2B01G122000 chr7B 97.727 44 1 0 2 45 695503214 695503171 2.540000e-10 76.8
50 TraesCS2B01G122000 chr3D 85.315 286 33 3 2091 2375 582881304 582881581 1.080000e-73 287.0
51 TraesCS2B01G122000 chr3D 78.014 282 60 2 944 1224 582880565 582880845 2.440000e-40 176.0
52 TraesCS2B01G122000 chr3B 75.851 323 62 12 629 946 761047363 761047052 1.480000e-32 150.0
53 TraesCS2B01G122000 chr4D 100.000 36 0 0 1 36 190570600 190570635 1.530000e-07 67.6
54 TraesCS2B01G122000 chr5A 97.297 37 1 0 1 37 10619408 10619444 1.980000e-06 63.9
55 TraesCS2B01G122000 chr2A 95.000 40 2 0 1 40 583840969 583840930 1.980000e-06 63.9
56 TraesCS2B01G122000 chr1A 94.595 37 2 0 1 37 486338642 486338678 9.200000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G122000 chr2B 89490389 89492772 2383 False 4403.000000 4403 100.0000 1 2384 1 chr2B.!!$F1 2383
1 TraesCS2B01G122000 chr2B 709567796 709569013 1217 True 809.000000 809 79.2060 979 2209 1 chr2B.!!$R3 1230
2 TraesCS2B01G122000 chr6D 33895755 33897009 1254 False 953.000000 953 80.7900 944 2209 1 chr6D.!!$F3 1265
3 TraesCS2B01G122000 chr6D 8566709 8567269 560 True 547.000000 547 84.2280 1615 2209 1 chr6D.!!$R2 594
4 TraesCS2B01G122000 chr6D 8551098 8552801 1703 True 510.500000 671 82.5445 289 1917 2 chr6D.!!$R3 1628
5 TraesCS2B01G122000 chr6D 34001571 34002234 663 False 230.000000 230 73.9580 759 1393 1 chr6D.!!$F4 634
6 TraesCS2B01G122000 chr5B 556793777 556795373 1596 True 551.000000 933 78.9085 631 2218 2 chr5B.!!$R1 1587
7 TraesCS2B01G122000 chr5B 621236140 621237906 1766 True 364.666667 514 79.8220 631 2375 3 chr5B.!!$R2 1744
8 TraesCS2B01G122000 chr6B 15395973 15397238 1265 True 926.000000 926 80.3670 940 2218 1 chr6B.!!$R5 1278
9 TraesCS2B01G122000 chr6B 670590765 670591982 1217 True 806.000000 806 79.0050 945 2218 1 chr6B.!!$R11 1273
10 TraesCS2B01G122000 chr6B 15713429 15714501 1072 True 789.000000 789 80.3130 944 2008 1 chr6B.!!$R6 1064
11 TraesCS2B01G122000 chr6B 16433863 16434841 978 False 649.000000 649 79.0530 944 1914 1 chr6B.!!$F4 970
12 TraesCS2B01G122000 chr6B 16321301 16322165 864 False 527.000000 527 78.2460 944 1795 1 chr6B.!!$F2 851
13 TraesCS2B01G122000 chr6B 90940915 90941648 733 False 497.000000 497 79.4870 1599 2363 1 chr6B.!!$F5 764
14 TraesCS2B01G122000 chr6B 15214860 15215453 593 True 479.000000 479 81.6090 1599 2194 1 chr6B.!!$R2 595
15 TraesCS2B01G122000 chr6B 15233382 15234130 748 True 383.000000 383 76.6840 950 1695 1 chr6B.!!$R3 745
16 TraesCS2B01G122000 chr6A 9474795 9475769 974 False 623.000000 623 78.6720 944 1914 1 chr6A.!!$F1 970
17 TraesCS2B01G122000 chr5D 499862835 499864713 1878 True 300.000000 424 81.3455 631 2375 2 chr5D.!!$R1 1744
18 TraesCS2B01G122000 chr7A 162578220 162578998 778 False 385.000000 385 76.2690 626 1384 1 chr7A.!!$F1 758
19 TraesCS2B01G122000 chr7D 161391026 161391804 778 False 368.000000 368 75.8880 626 1384 1 chr7D.!!$F1 758
20 TraesCS2B01G122000 chr7B 123655949 123656724 775 False 348.000000 348 75.5080 626 1384 1 chr7B.!!$F1 758
21 TraesCS2B01G122000 chr3D 582880565 582881581 1016 False 231.500000 287 81.6645 944 2375 2 chr3D.!!$F1 1431

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.246635 TTAGGCGGCAGACAGAGAAC 59.753 55.0 13.08 0.0 0.00 3.01 F
807 852 0.251341 GGTGGTCAAGCCCAATGTCT 60.251 55.0 0.00 0.0 35.92 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1176 1262 0.040058 TGTAGTGTCGGGGCCTAAGA 59.960 55.0 0.84 0.0 0.0 2.10 R
1793 1964 0.323725 AGCCAGGCGAATTGACCATT 60.324 50.0 5.55 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.549078 GAAAGACTTATATTTAGGAACTGAGGG 57.451 37.037 0.00 0.00 41.52 4.30
32 33 8.855804 AAGACTTATATTTAGGAACTGAGGGA 57.144 34.615 0.00 0.00 41.52 4.20
33 34 8.485578 AGACTTATATTTAGGAACTGAGGGAG 57.514 38.462 0.00 0.00 41.52 4.30
34 35 8.068733 AGACTTATATTTAGGAACTGAGGGAGT 58.931 37.037 0.00 0.00 41.52 3.85
35 36 9.364653 GACTTATATTTAGGAACTGAGGGAGTA 57.635 37.037 0.00 0.00 41.52 2.59
36 37 9.725206 ACTTATATTTAGGAACTGAGGGAGTAA 57.275 33.333 0.00 0.00 41.52 2.24
40 41 6.945636 TTTAGGAACTGAGGGAGTAAATGA 57.054 37.500 0.00 0.00 41.52 2.57
41 42 7.510675 TTTAGGAACTGAGGGAGTAAATGAT 57.489 36.000 0.00 0.00 41.52 2.45
42 43 7.510675 TTAGGAACTGAGGGAGTAAATGATT 57.489 36.000 0.00 0.00 41.52 2.57
43 44 6.394345 AGGAACTGAGGGAGTAAATGATTT 57.606 37.500 0.00 0.00 37.18 2.17
44 45 6.794534 AGGAACTGAGGGAGTAAATGATTTT 58.205 36.000 0.00 0.00 37.18 1.82
45 46 7.928873 AGGAACTGAGGGAGTAAATGATTTTA 58.071 34.615 0.00 0.00 37.18 1.52
46 47 8.390921 AGGAACTGAGGGAGTAAATGATTTTAA 58.609 33.333 0.00 0.00 37.18 1.52
47 48 8.678199 GGAACTGAGGGAGTAAATGATTTTAAG 58.322 37.037 0.00 0.00 33.09 1.85
48 49 8.581253 AACTGAGGGAGTAAATGATTTTAAGG 57.419 34.615 0.00 0.00 33.09 2.69
49 50 7.699878 ACTGAGGGAGTAAATGATTTTAAGGT 58.300 34.615 0.00 0.00 30.86 3.50
50 51 8.170730 ACTGAGGGAGTAAATGATTTTAAGGTT 58.829 33.333 0.00 0.00 30.86 3.50
51 52 9.681062 CTGAGGGAGTAAATGATTTTAAGGTTA 57.319 33.333 0.00 0.00 0.00 2.85
52 53 9.457436 TGAGGGAGTAAATGATTTTAAGGTTAC 57.543 33.333 0.00 0.00 0.00 2.50
53 54 9.682465 GAGGGAGTAAATGATTTTAAGGTTACT 57.318 33.333 0.00 0.00 35.16 2.24
54 55 9.682465 AGGGAGTAAATGATTTTAAGGTTACTC 57.318 33.333 11.23 11.23 43.23 2.59
55 56 9.457436 GGGAGTAAATGATTTTAAGGTTACTCA 57.543 33.333 18.11 0.00 44.64 3.41
65 66 9.543018 GATTTTAAGGTTACTCAAAATCTGTCG 57.457 33.333 15.35 0.00 41.17 4.35
66 67 8.665643 TTTTAAGGTTACTCAAAATCTGTCGA 57.334 30.769 0.00 0.00 0.00 4.20
67 68 8.842358 TTTAAGGTTACTCAAAATCTGTCGAT 57.158 30.769 0.00 0.00 0.00 3.59
68 69 6.969828 AAGGTTACTCAAAATCTGTCGATC 57.030 37.500 0.00 0.00 0.00 3.69
69 70 5.420409 AGGTTACTCAAAATCTGTCGATCC 58.580 41.667 0.00 0.00 0.00 3.36
70 71 5.046591 AGGTTACTCAAAATCTGTCGATCCA 60.047 40.000 0.00 0.00 0.00 3.41
71 72 5.642063 GGTTACTCAAAATCTGTCGATCCAA 59.358 40.000 0.00 0.00 0.00 3.53
72 73 6.148811 GGTTACTCAAAATCTGTCGATCCAAA 59.851 38.462 0.00 0.00 0.00 3.28
73 74 5.613358 ACTCAAAATCTGTCGATCCAAAC 57.387 39.130 0.00 0.00 0.00 2.93
74 75 5.063204 ACTCAAAATCTGTCGATCCAAACA 58.937 37.500 0.00 0.00 0.00 2.83
75 76 5.530915 ACTCAAAATCTGTCGATCCAAACAA 59.469 36.000 0.00 0.00 0.00 2.83
76 77 6.039270 ACTCAAAATCTGTCGATCCAAACAAA 59.961 34.615 0.00 0.00 0.00 2.83
77 78 6.800543 TCAAAATCTGTCGATCCAAACAAAA 58.199 32.000 0.00 0.00 0.00 2.44
78 79 7.432869 TCAAAATCTGTCGATCCAAACAAAAT 58.567 30.769 0.00 0.00 0.00 1.82
79 80 7.594758 TCAAAATCTGTCGATCCAAACAAAATC 59.405 33.333 0.00 0.00 0.00 2.17
80 81 6.824305 AATCTGTCGATCCAAACAAAATCT 57.176 33.333 0.00 0.00 0.00 2.40
81 82 5.611796 TCTGTCGATCCAAACAAAATCTG 57.388 39.130 0.00 0.00 0.00 2.90
82 83 5.063204 TCTGTCGATCCAAACAAAATCTGT 58.937 37.500 0.00 0.00 41.27 3.41
94 95 6.655078 AACAAAATCTGTTGCATCTAAGGT 57.345 33.333 0.00 0.00 46.80 3.50
95 96 7.759489 AACAAAATCTGTTGCATCTAAGGTA 57.241 32.000 0.00 0.00 46.80 3.08
96 97 7.383102 ACAAAATCTGTTGCATCTAAGGTAG 57.617 36.000 0.00 0.00 32.99 3.18
97 98 6.942576 ACAAAATCTGTTGCATCTAAGGTAGT 59.057 34.615 0.00 0.00 32.99 2.73
98 99 8.100791 ACAAAATCTGTTGCATCTAAGGTAGTA 58.899 33.333 0.00 0.00 32.99 1.82
99 100 9.113838 CAAAATCTGTTGCATCTAAGGTAGTAT 57.886 33.333 0.00 0.00 0.00 2.12
109 110 9.769677 TGCATCTAAGGTAGTATAATATGAGGT 57.230 33.333 0.00 0.00 0.00 3.85
112 113 8.591114 TCTAAGGTAGTATAATATGAGGTGGC 57.409 38.462 0.00 0.00 0.00 5.01
113 114 8.174757 TCTAAGGTAGTATAATATGAGGTGGCA 58.825 37.037 0.00 0.00 0.00 4.92
114 115 7.814693 AAGGTAGTATAATATGAGGTGGCAT 57.185 36.000 0.00 0.00 0.00 4.40
115 116 7.187824 AGGTAGTATAATATGAGGTGGCATG 57.812 40.000 0.00 0.00 0.00 4.06
116 117 6.959954 AGGTAGTATAATATGAGGTGGCATGA 59.040 38.462 0.00 0.00 0.00 3.07
117 118 7.124901 AGGTAGTATAATATGAGGTGGCATGAG 59.875 40.741 0.00 0.00 0.00 2.90
118 119 7.124298 GGTAGTATAATATGAGGTGGCATGAGA 59.876 40.741 0.00 0.00 0.00 3.27
119 120 7.180322 AGTATAATATGAGGTGGCATGAGAG 57.820 40.000 0.00 0.00 0.00 3.20
120 121 6.956435 AGTATAATATGAGGTGGCATGAGAGA 59.044 38.462 0.00 0.00 0.00 3.10
121 122 4.620589 AATATGAGGTGGCATGAGAGAG 57.379 45.455 0.00 0.00 0.00 3.20
122 123 2.171568 ATGAGGTGGCATGAGAGAGA 57.828 50.000 0.00 0.00 0.00 3.10
123 124 1.189752 TGAGGTGGCATGAGAGAGAC 58.810 55.000 0.00 0.00 0.00 3.36
124 125 1.272928 TGAGGTGGCATGAGAGAGACT 60.273 52.381 0.00 0.00 0.00 3.24
125 126 1.136695 GAGGTGGCATGAGAGAGACTG 59.863 57.143 0.00 0.00 0.00 3.51
126 127 1.189752 GGTGGCATGAGAGAGACTGA 58.810 55.000 0.00 0.00 0.00 3.41
127 128 1.761784 GGTGGCATGAGAGAGACTGAT 59.238 52.381 0.00 0.00 0.00 2.90
128 129 2.483363 GGTGGCATGAGAGAGACTGATG 60.483 54.545 0.00 0.00 41.83 3.07
129 130 1.761198 TGGCATGAGAGAGACTGATGG 59.239 52.381 0.00 0.00 39.87 3.51
130 131 1.070445 GGCATGAGAGAGACTGATGGG 59.930 57.143 0.00 0.00 39.87 4.00
131 132 1.761784 GCATGAGAGAGACTGATGGGT 59.238 52.381 0.00 0.00 39.87 4.51
132 133 2.483363 GCATGAGAGAGACTGATGGGTG 60.483 54.545 0.00 0.00 39.87 4.61
133 134 1.857965 TGAGAGAGACTGATGGGTGG 58.142 55.000 0.00 0.00 0.00 4.61
134 135 1.118838 GAGAGAGACTGATGGGTGGG 58.881 60.000 0.00 0.00 0.00 4.61
135 136 0.712979 AGAGAGACTGATGGGTGGGA 59.287 55.000 0.00 0.00 0.00 4.37
136 137 1.118838 GAGAGACTGATGGGTGGGAG 58.881 60.000 0.00 0.00 0.00 4.30
137 138 0.980231 AGAGACTGATGGGTGGGAGC 60.980 60.000 0.00 0.00 0.00 4.70
138 139 1.977293 GAGACTGATGGGTGGGAGCC 61.977 65.000 0.00 0.00 36.00 4.70
161 162 2.608988 CCACCTGGGTCTCTGGCT 60.609 66.667 0.00 0.00 37.94 4.75
162 163 2.227036 CCACCTGGGTCTCTGGCTT 61.227 63.158 0.00 0.00 37.94 4.35
163 164 0.909610 CCACCTGGGTCTCTGGCTTA 60.910 60.000 0.00 0.00 37.94 3.09
164 165 0.539051 CACCTGGGTCTCTGGCTTAG 59.461 60.000 0.00 0.00 37.94 2.18
165 166 0.618968 ACCTGGGTCTCTGGCTTAGG 60.619 60.000 0.00 0.00 37.94 2.69
166 167 1.524482 CTGGGTCTCTGGCTTAGGC 59.476 63.158 0.00 0.00 37.82 3.93
167 168 2.303549 CTGGGTCTCTGGCTTAGGCG 62.304 65.000 0.40 0.00 39.81 5.52
168 169 2.501610 GGTCTCTGGCTTAGGCGG 59.498 66.667 8.43 8.43 39.81 6.13
169 170 2.202946 GTCTCTGGCTTAGGCGGC 60.203 66.667 9.95 0.00 39.81 6.53
170 171 2.683572 TCTCTGGCTTAGGCGGCA 60.684 61.111 13.08 0.00 39.81 5.69
174 175 3.318384 TGGCTTAGGCGGCAGACA 61.318 61.111 13.08 6.19 39.81 3.41
175 176 2.512515 GGCTTAGGCGGCAGACAG 60.513 66.667 13.08 1.83 39.81 3.51
176 177 2.579201 GCTTAGGCGGCAGACAGA 59.421 61.111 13.08 0.00 0.00 3.41
177 178 1.520342 GCTTAGGCGGCAGACAGAG 60.520 63.158 13.08 0.35 0.00 3.35
178 179 1.949847 GCTTAGGCGGCAGACAGAGA 61.950 60.000 13.08 0.00 0.00 3.10
179 180 0.532573 CTTAGGCGGCAGACAGAGAA 59.467 55.000 13.08 0.00 0.00 2.87
180 181 0.246635 TTAGGCGGCAGACAGAGAAC 59.753 55.000 13.08 0.00 0.00 3.01
181 182 1.605058 TAGGCGGCAGACAGAGAACC 61.605 60.000 13.08 0.00 0.00 3.62
182 183 2.343758 GCGGCAGACAGAGAACCA 59.656 61.111 0.00 0.00 0.00 3.67
183 184 2.029844 GCGGCAGACAGAGAACCAC 61.030 63.158 0.00 0.00 0.00 4.16
184 185 1.734477 CGGCAGACAGAGAACCACG 60.734 63.158 0.00 0.00 0.00 4.94
185 186 2.029844 GGCAGACAGAGAACCACGC 61.030 63.158 0.00 0.00 0.00 5.34
186 187 2.029844 GCAGACAGAGAACCACGCC 61.030 63.158 0.00 0.00 0.00 5.68
187 188 1.374758 CAGACAGAGAACCACGCCC 60.375 63.158 0.00 0.00 0.00 6.13
188 189 1.534235 AGACAGAGAACCACGCCCT 60.534 57.895 0.00 0.00 0.00 5.19
189 190 1.122019 AGACAGAGAACCACGCCCTT 61.122 55.000 0.00 0.00 0.00 3.95
190 191 0.670854 GACAGAGAACCACGCCCTTC 60.671 60.000 0.00 0.00 0.00 3.46
191 192 1.371183 CAGAGAACCACGCCCTTCA 59.629 57.895 0.00 0.00 0.00 3.02
192 193 0.951040 CAGAGAACCACGCCCTTCAC 60.951 60.000 0.00 0.00 0.00 3.18
193 194 1.122019 AGAGAACCACGCCCTTCACT 61.122 55.000 0.00 0.00 0.00 3.41
194 195 0.670854 GAGAACCACGCCCTTCACTC 60.671 60.000 0.00 0.00 0.00 3.51
195 196 1.671379 GAACCACGCCCTTCACTCC 60.671 63.158 0.00 0.00 0.00 3.85
196 197 2.391724 GAACCACGCCCTTCACTCCA 62.392 60.000 0.00 0.00 0.00 3.86
197 198 2.358737 CCACGCCCTTCACTCCAC 60.359 66.667 0.00 0.00 0.00 4.02
198 199 2.358737 CACGCCCTTCACTCCACC 60.359 66.667 0.00 0.00 0.00 4.61
199 200 2.847234 ACGCCCTTCACTCCACCA 60.847 61.111 0.00 0.00 0.00 4.17
200 201 2.358737 CGCCCTTCACTCCACCAC 60.359 66.667 0.00 0.00 0.00 4.16
201 202 2.034221 GCCCTTCACTCCACCACC 59.966 66.667 0.00 0.00 0.00 4.61
202 203 2.347490 CCCTTCACTCCACCACCG 59.653 66.667 0.00 0.00 0.00 4.94
203 204 2.347490 CCTTCACTCCACCACCGG 59.653 66.667 0.00 0.00 0.00 5.28
204 205 2.358737 CTTCACTCCACCACCGGC 60.359 66.667 0.00 0.00 0.00 6.13
205 206 3.901797 CTTCACTCCACCACCGGCC 62.902 68.421 0.00 0.00 0.00 6.13
220 221 4.313675 GCCGGCCATCGCGATTTC 62.314 66.667 21.14 13.64 37.59 2.17
221 222 3.649986 CCGGCCATCGCGATTTCC 61.650 66.667 21.14 20.89 37.59 3.13
222 223 3.649986 CGGCCATCGCGATTTCCC 61.650 66.667 21.14 17.81 35.02 3.97
223 224 3.287520 GGCCATCGCGATTTCCCC 61.288 66.667 21.14 13.11 35.02 4.81
224 225 2.515991 GCCATCGCGATTTCCCCA 60.516 61.111 21.14 0.00 0.00 4.96
225 226 1.898574 GCCATCGCGATTTCCCCAT 60.899 57.895 21.14 0.00 0.00 4.00
226 227 1.455383 GCCATCGCGATTTCCCCATT 61.455 55.000 21.14 0.00 0.00 3.16
227 228 0.593128 CCATCGCGATTTCCCCATTC 59.407 55.000 21.14 0.00 0.00 2.67
228 229 0.593128 CATCGCGATTTCCCCATTCC 59.407 55.000 21.14 0.00 0.00 3.01
229 230 0.537371 ATCGCGATTTCCCCATTCCC 60.537 55.000 17.62 0.00 0.00 3.97
230 231 1.152963 CGCGATTTCCCCATTCCCT 60.153 57.895 0.00 0.00 0.00 4.20
231 232 1.166531 CGCGATTTCCCCATTCCCTC 61.167 60.000 0.00 0.00 0.00 4.30
232 233 1.166531 GCGATTTCCCCATTCCCTCG 61.167 60.000 0.00 0.00 0.00 4.63
233 234 1.166531 CGATTTCCCCATTCCCTCGC 61.167 60.000 0.00 0.00 0.00 5.03
234 235 0.823769 GATTTCCCCATTCCCTCGCC 60.824 60.000 0.00 0.00 0.00 5.54
235 236 2.624674 ATTTCCCCATTCCCTCGCCG 62.625 60.000 0.00 0.00 0.00 6.46
266 267 3.818787 CGCCACCCAAGCTGCATC 61.819 66.667 1.02 0.00 0.00 3.91
267 268 2.677524 GCCACCCAAGCTGCATCA 60.678 61.111 1.02 0.00 0.00 3.07
268 269 2.277591 GCCACCCAAGCTGCATCAA 61.278 57.895 1.02 0.00 0.00 2.57
269 270 1.610554 GCCACCCAAGCTGCATCAAT 61.611 55.000 1.02 0.00 0.00 2.57
270 271 0.458669 CCACCCAAGCTGCATCAATC 59.541 55.000 1.02 0.00 0.00 2.67
271 272 1.471119 CACCCAAGCTGCATCAATCT 58.529 50.000 1.02 0.00 0.00 2.40
272 273 1.404391 CACCCAAGCTGCATCAATCTC 59.596 52.381 1.02 0.00 0.00 2.75
273 274 1.030457 CCCAAGCTGCATCAATCTCC 58.970 55.000 1.02 0.00 0.00 3.71
274 275 1.409802 CCCAAGCTGCATCAATCTCCT 60.410 52.381 1.02 0.00 0.00 3.69
275 276 2.376109 CCAAGCTGCATCAATCTCCTT 58.624 47.619 1.02 0.00 0.00 3.36
276 277 2.358267 CCAAGCTGCATCAATCTCCTTC 59.642 50.000 1.02 0.00 0.00 3.46
277 278 3.280295 CAAGCTGCATCAATCTCCTTCT 58.720 45.455 1.02 0.00 0.00 2.85
278 279 3.196939 AGCTGCATCAATCTCCTTCTC 57.803 47.619 1.02 0.00 0.00 2.87
279 280 2.158784 AGCTGCATCAATCTCCTTCTCC 60.159 50.000 1.02 0.00 0.00 3.71
280 281 2.481854 CTGCATCAATCTCCTTCTCCG 58.518 52.381 0.00 0.00 0.00 4.63
281 282 2.102084 CTGCATCAATCTCCTTCTCCGA 59.898 50.000 0.00 0.00 0.00 4.55
282 283 2.159043 TGCATCAATCTCCTTCTCCGAC 60.159 50.000 0.00 0.00 0.00 4.79
283 284 2.736978 CATCAATCTCCTTCTCCGACG 58.263 52.381 0.00 0.00 0.00 5.12
284 285 1.103803 TCAATCTCCTTCTCCGACGG 58.896 55.000 7.84 7.84 0.00 4.79
285 286 0.528684 CAATCTCCTTCTCCGACGGC 60.529 60.000 9.66 0.00 0.00 5.68
286 287 2.005960 AATCTCCTTCTCCGACGGCG 62.006 60.000 9.66 1.94 37.24 6.46
333 334 4.106925 GGCCTCACCCAGCTCCTG 62.107 72.222 0.00 0.00 0.00 3.86
338 339 1.821061 CTCACCCAGCTCCTGTCGTT 61.821 60.000 0.00 0.00 0.00 3.85
341 342 1.738099 CCCAGCTCCTGTCGTTTCG 60.738 63.158 0.00 0.00 0.00 3.46
351 352 4.430765 TCGTTTCGCTCCGCCTCC 62.431 66.667 0.00 0.00 0.00 4.30
352 353 4.735132 CGTTTCGCTCCGCCTCCA 62.735 66.667 0.00 0.00 0.00 3.86
357 358 4.899239 CGCTCCGCCTCCACCATC 62.899 72.222 0.00 0.00 0.00 3.51
362 363 3.083349 CGCCTCCACCATCTCCCA 61.083 66.667 0.00 0.00 0.00 4.37
363 364 2.914289 GCCTCCACCATCTCCCAG 59.086 66.667 0.00 0.00 0.00 4.45
365 366 2.750657 CCTCCACCATCTCCCAGCC 61.751 68.421 0.00 0.00 0.00 4.85
367 368 3.016971 CCACCATCTCCCAGCCCA 61.017 66.667 0.00 0.00 0.00 5.36
368 369 2.593978 CACCATCTCCCAGCCCAG 59.406 66.667 0.00 0.00 0.00 4.45
423 430 2.126031 GGCTTCGTCGTGGAGGAC 60.126 66.667 0.00 0.00 0.00 3.85
454 461 4.135153 CCTGCGACCTCACCCGAG 62.135 72.222 0.00 0.00 39.16 4.63
495 502 0.401738 CCAAGCTCTCCCACCTCAAA 59.598 55.000 0.00 0.00 0.00 2.69
502 509 1.151474 TCCCACCTCAAATCCCCCA 60.151 57.895 0.00 0.00 0.00 4.96
591 598 3.365265 GCCAAGGACCCGCAGTTG 61.365 66.667 0.00 0.00 0.00 3.16
622 629 1.492993 AAGTGGAGAGAACCCTGGCC 61.493 60.000 0.00 0.00 0.00 5.36
623 630 1.920835 GTGGAGAGAACCCTGGCCT 60.921 63.158 3.32 0.00 0.00 5.19
624 631 1.151810 TGGAGAGAACCCTGGCCTT 60.152 57.895 3.32 0.00 0.00 4.35
626 633 0.912006 GGAGAGAACCCTGGCCTTCT 60.912 60.000 3.32 4.15 0.00 2.85
657 702 2.033602 TCGTCTCGCTCTCCCACA 59.966 61.111 0.00 0.00 0.00 4.17
668 713 1.812571 CTCTCCCACAACAAATTCCGG 59.187 52.381 0.00 0.00 0.00 5.14
689 734 1.764723 TGCAGATCCATCGTCTCCAAT 59.235 47.619 0.00 0.00 0.00 3.16
729 774 1.971357 TCTTCGGCTCCTTTGAGAACT 59.029 47.619 0.00 0.00 41.42 3.01
733 778 1.827681 GGCTCCTTTGAGAACTTCCC 58.172 55.000 0.00 0.00 41.42 3.97
738 783 0.960861 CTTTGAGAACTTCCCCCGGC 60.961 60.000 0.00 0.00 0.00 6.13
740 785 3.009714 GAGAACTTCCCCCGGCCT 61.010 66.667 0.00 0.00 0.00 5.19
743 788 2.531942 AACTTCCCCCGGCCTCTT 60.532 61.111 0.00 0.00 0.00 2.85
747 792 2.610532 CTTCCCCCGGCCTCTTAAGC 62.611 65.000 0.00 0.00 0.00 3.09
752 797 3.255379 CGGCCTCTTAAGCGCGAC 61.255 66.667 12.10 0.04 0.00 5.19
753 798 2.890961 GGCCTCTTAAGCGCGACC 60.891 66.667 12.10 0.00 0.00 4.79
807 852 0.251341 GGTGGTCAAGCCCAATGTCT 60.251 55.000 0.00 0.00 35.92 3.41
818 863 0.670546 CCAATGTCTCGTTCCTGCGT 60.671 55.000 0.00 0.00 0.00 5.24
852 897 2.358898 GGTGATTGCGATATTGCCAAGT 59.641 45.455 12.54 0.00 0.00 3.16
855 900 3.693578 TGATTGCGATATTGCCAAGTTGA 59.306 39.130 12.54 0.00 0.00 3.18
881 926 2.515290 CAGCCATGGATGCTCGCA 60.515 61.111 18.60 0.00 36.81 5.10
890 935 4.349503 ATGCTCGCAGCCAACCCA 62.350 61.111 0.00 0.00 41.51 4.51
920 965 2.567569 GCAATGGTGTCATGCGCA 59.432 55.556 14.96 14.96 34.55 6.09
936 981 0.391661 CGCAGAAGGCATAGGTGTGT 60.392 55.000 0.00 0.00 45.17 3.72
962 1036 0.671781 GCTGTCGCATTCCTCAGTGT 60.672 55.000 0.00 0.00 35.78 3.55
977 1063 1.546029 CAGTGTGGAGAAGATCACCGA 59.454 52.381 0.00 0.00 33.29 4.69
1034 1120 1.693034 ATGCTGAGGTGGGCATTGA 59.307 52.632 0.00 0.00 45.41 2.57
1043 1129 3.624777 AGGTGGGCATTGATGTTTCTAG 58.375 45.455 0.00 0.00 0.00 2.43
1052 1138 3.634397 TGATGTTTCTAGGGCTCCAAG 57.366 47.619 0.00 0.00 0.00 3.61
1059 1145 1.541368 TAGGGCTCCAAGGGTGCTT 60.541 57.895 8.95 1.88 41.35 3.91
1082 1168 1.734465 GATGTCCAAGGACTTTCTGCG 59.266 52.381 19.20 0.00 44.80 5.18
1083 1169 0.884704 TGTCCAAGGACTTTCTGCGC 60.885 55.000 19.20 0.00 44.80 6.09
1122 1208 0.687757 TCTCCGAGGTGGGATTGGAG 60.688 60.000 3.23 3.23 46.14 3.86
1141 1227 1.312371 GCCGGCCTACATTGCTCAAA 61.312 55.000 18.11 0.00 0.00 2.69
1215 1354 9.388506 CACTACATTATGAAGTTTCTCAAGGAT 57.611 33.333 0.00 0.00 0.00 3.24
1227 1366 8.970859 AGTTTCTCAAGGATAATGGATTACTG 57.029 34.615 0.00 0.00 0.00 2.74
1231 1370 7.075797 TCTCAAGGATAATGGATTACTGGAGA 58.924 38.462 0.00 0.00 33.10 3.71
1250 1389 4.461081 GGAGAATGATCGGAGCTACTATGT 59.539 45.833 0.00 0.00 0.00 2.29
1260 1399 2.543012 GAGCTACTATGTCGCAGTCGTA 59.457 50.000 0.00 0.00 36.96 3.43
1303 1442 5.925509 TGAAGAAGTACATATGCCCTTACC 58.074 41.667 1.58 0.00 0.00 2.85
1367 1506 1.065418 CAAAGGGGAAGTGCCGACTAT 60.065 52.381 0.00 0.00 37.63 2.12
1420 1559 4.344359 TGATGTAACTGTGTGCTGGTTA 57.656 40.909 0.00 0.00 0.00 2.85
1426 1565 1.089920 CTGTGTGCTGGTTATCTGCC 58.910 55.000 0.00 0.00 39.24 4.85
1429 1574 0.391130 TGTGCTGGTTATCTGCCGTC 60.391 55.000 0.00 0.00 39.24 4.79
1447 1592 3.043586 CGTCGTATGTCTGTTAGATGCC 58.956 50.000 0.00 0.00 0.00 4.40
1465 1610 1.033574 CCGGGTTGGTTGTTGCTAAA 58.966 50.000 0.00 0.00 0.00 1.85
1478 1623 4.843147 TGTTGCTAAAGTGTGATGAAACG 58.157 39.130 0.00 0.00 0.00 3.60
1490 1635 8.055279 AGTGTGATGAAACGGATAATTTGATT 57.945 30.769 0.00 0.00 0.00 2.57
1515 1663 3.955551 TGAATACTGTGCAATGCCATCAT 59.044 39.130 1.53 0.00 33.53 2.45
1516 1664 4.037089 TGAATACTGTGCAATGCCATCATC 59.963 41.667 1.53 0.00 31.27 2.92
1519 1667 1.478916 CTGTGCAATGCCATCATCCAA 59.521 47.619 1.53 0.00 31.27 3.53
1541 1689 3.760684 ACAGAGAAGAAACCATGGATTGC 59.239 43.478 21.47 7.85 0.00 3.56
1546 1694 6.894103 AGAGAAGAAACCATGGATTGCTTATT 59.106 34.615 21.47 10.49 0.00 1.40
1549 1697 9.034800 AGAAGAAACCATGGATTGCTTATTAAA 57.965 29.630 21.47 0.00 0.00 1.52
1593 1745 9.539825 TGTTTTTAAACACATGTATTGATTGCT 57.460 25.926 0.00 0.00 43.45 3.91
1594 1746 9.796062 GTTTTTAAACACATGTATTGATTGCTG 57.204 29.630 0.00 0.00 38.74 4.41
1596 1748 3.788333 ACACATGTATTGATTGCTGGC 57.212 42.857 0.00 0.00 0.00 4.85
1604 1771 4.463539 TGTATTGATTGCTGGCACATTCTT 59.536 37.500 0.00 4.73 38.20 2.52
1607 1774 3.093814 TGATTGCTGGCACATTCTTCAT 58.906 40.909 0.00 0.00 38.20 2.57
1610 1777 2.241160 TGCTGGCACATTCTTCATTGT 58.759 42.857 0.00 0.00 38.20 2.71
1653 1821 5.482908 AGTTAGTTGCTGGTGTATTGAGAG 58.517 41.667 0.00 0.00 0.00 3.20
1654 1822 5.246203 AGTTAGTTGCTGGTGTATTGAGAGA 59.754 40.000 0.00 0.00 0.00 3.10
1655 1823 4.833478 AGTTGCTGGTGTATTGAGAGAT 57.167 40.909 0.00 0.00 0.00 2.75
1656 1824 4.511527 AGTTGCTGGTGTATTGAGAGATG 58.488 43.478 0.00 0.00 0.00 2.90
1661 1829 5.059161 GCTGGTGTATTGAGAGATGCAATA 58.941 41.667 0.00 0.00 37.22 1.90
1709 1880 5.719085 TGTGGGTAATGCATTCCTAATGTTT 59.281 36.000 16.86 0.00 41.01 2.83
1805 1976 5.772521 AGTCTTTTTGGAATGGTCAATTCG 58.227 37.500 0.00 0.00 44.95 3.34
1874 2195 6.594788 AGTCATTTTGGTTTGCTCATATGT 57.405 33.333 1.90 0.00 0.00 2.29
1964 2344 4.770795 AGTAAGTGTCTGCAAGTGAGTTT 58.229 39.130 0.00 0.00 33.76 2.66
1965 2345 4.572389 AGTAAGTGTCTGCAAGTGAGTTTG 59.428 41.667 0.00 0.00 33.76 2.93
1995 2375 6.962182 AGTTGGATCAGAGGTAATGATTTGA 58.038 36.000 0.00 0.00 37.52 2.69
2008 2388 2.358957 TGATTTGAAGCCATCGGTCAG 58.641 47.619 0.00 0.00 0.00 3.51
2017 2397 1.401905 GCCATCGGTCAGATTGGAAAC 59.598 52.381 0.00 0.00 37.52 2.78
2119 2504 0.908198 AACTCTCACATGGAGGAGGC 59.092 55.000 13.05 0.00 44.19 4.70
2166 2559 9.322773 GTAAGTAAACTTAGGTGGATATGTTCC 57.677 37.037 2.83 0.00 40.71 3.62
2175 2568 9.408648 CTTAGGTGGATATGTTCCTTTTTATGT 57.591 33.333 0.00 0.00 45.68 2.29
2202 2595 7.552687 TGGTAATGTTATTGAGACAATGGAGAC 59.447 37.037 7.16 2.70 0.00 3.36
2209 2602 2.560981 TGAGACAATGGAGACGCACTTA 59.439 45.455 0.00 0.00 0.00 2.24
2214 2607 0.108138 ATGGAGACGCACTTACTGCC 60.108 55.000 0.00 0.00 43.84 4.85
2228 2621 5.412594 CACTTACTGCCAGTGATGTTATTGT 59.587 40.000 7.83 0.00 43.90 2.71
2229 2622 5.643777 ACTTACTGCCAGTGATGTTATTGTC 59.356 40.000 7.83 0.00 0.00 3.18
2230 2623 4.019792 ACTGCCAGTGATGTTATTGTCA 57.980 40.909 0.00 0.00 0.00 3.58
2231 2624 4.592942 ACTGCCAGTGATGTTATTGTCAT 58.407 39.130 0.00 0.00 0.00 3.06
2232 2625 5.012239 ACTGCCAGTGATGTTATTGTCATT 58.988 37.500 0.00 0.00 0.00 2.57
2233 2626 5.106038 ACTGCCAGTGATGTTATTGTCATTG 60.106 40.000 0.00 0.00 33.43 2.82
2249 2642 4.781071 GTCATTGAGACAAAGAAGCACTG 58.219 43.478 0.00 0.00 46.77 3.66
2258 2651 6.729187 AGACAAAGAAGCACTGATTTTGTAC 58.271 36.000 1.40 0.00 40.78 2.90
2292 2686 2.416431 GGATTTTCATGCTCTGCACCAC 60.416 50.000 0.00 0.00 43.04 4.16
2293 2687 1.689984 TTTTCATGCTCTGCACCACA 58.310 45.000 0.00 0.00 43.04 4.17
2302 2696 2.161855 CTCTGCACCACAGCCATAAAA 58.838 47.619 0.00 0.00 46.76 1.52
2303 2697 2.557924 CTCTGCACCACAGCCATAAAAA 59.442 45.455 0.00 0.00 46.76 1.94
2304 2698 2.295909 TCTGCACCACAGCCATAAAAAC 59.704 45.455 0.00 0.00 46.76 2.43
2309 2703 2.028203 ACCACAGCCATAAAAACCATGC 60.028 45.455 0.00 0.00 0.00 4.06
2330 2724 2.223340 CGTTTATTGTGGATGGCAGCTC 60.223 50.000 1.50 0.00 0.00 4.09
2365 2759 4.808558 TCATTATTGTGTTTTGCTCCTGC 58.191 39.130 0.00 0.00 40.20 4.85
2370 2764 1.454847 TGTTTTGCTCCTGCGGGTT 60.455 52.632 12.43 0.00 43.34 4.11
2375 2769 0.326595 TTGCTCCTGCGGGTTATTCA 59.673 50.000 12.43 0.83 43.34 2.57
2376 2770 0.107703 TGCTCCTGCGGGTTATTCAG 60.108 55.000 12.43 0.85 43.34 3.02
2377 2771 1.440145 GCTCCTGCGGGTTATTCAGC 61.440 60.000 12.43 8.28 0.00 4.26
2378 2772 0.179000 CTCCTGCGGGTTATTCAGCT 59.821 55.000 12.43 0.00 0.00 4.24
2379 2773 1.412710 CTCCTGCGGGTTATTCAGCTA 59.587 52.381 12.43 0.00 0.00 3.32
2380 2774 1.412710 TCCTGCGGGTTATTCAGCTAG 59.587 52.381 12.43 0.00 0.00 3.42
2381 2775 1.139058 CCTGCGGGTTATTCAGCTAGT 59.861 52.381 2.29 0.00 0.00 2.57
2382 2776 2.420129 CCTGCGGGTTATTCAGCTAGTT 60.420 50.000 2.29 0.00 0.00 2.24
2383 2777 2.609459 CTGCGGGTTATTCAGCTAGTTG 59.391 50.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.549078 CCCTCAGTTCCTAAATATAAGTCTTTC 57.451 37.037 0.00 0.00 0.00 2.62
6 7 9.280456 TCCCTCAGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
7 8 8.855804 TCCCTCAGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
8 9 8.068733 ACTCCCTCAGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 26.56 3.24
9 10 8.252624 ACTCCCTCAGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 26.56 3.01
10 11 9.725206 TTACTCCCTCAGTTCCTAAATATAAGT 57.275 33.333 0.00 0.00 36.43 2.24
14 15 9.225682 TCATTTACTCCCTCAGTTCCTAAATAT 57.774 33.333 0.00 0.00 36.43 1.28
15 16 8.618240 TCATTTACTCCCTCAGTTCCTAAATA 57.382 34.615 0.00 0.00 36.43 1.40
16 17 7.510675 TCATTTACTCCCTCAGTTCCTAAAT 57.489 36.000 0.00 0.00 36.43 1.40
17 18 6.945636 TCATTTACTCCCTCAGTTCCTAAA 57.054 37.500 0.00 0.00 36.43 1.85
18 19 7.510675 AATCATTTACTCCCTCAGTTCCTAA 57.489 36.000 0.00 0.00 36.43 2.69
19 20 7.510675 AAATCATTTACTCCCTCAGTTCCTA 57.489 36.000 0.00 0.00 36.43 2.94
20 21 6.394345 AAATCATTTACTCCCTCAGTTCCT 57.606 37.500 0.00 0.00 36.43 3.36
21 22 8.575649 TTAAAATCATTTACTCCCTCAGTTCC 57.424 34.615 0.00 0.00 36.43 3.62
22 23 8.678199 CCTTAAAATCATTTACTCCCTCAGTTC 58.322 37.037 0.00 0.00 36.43 3.01
23 24 8.170730 ACCTTAAAATCATTTACTCCCTCAGTT 58.829 33.333 0.00 0.00 36.43 3.16
24 25 7.699878 ACCTTAAAATCATTTACTCCCTCAGT 58.300 34.615 0.00 0.00 39.41 3.41
25 26 8.581253 AACCTTAAAATCATTTACTCCCTCAG 57.419 34.615 0.00 0.00 30.86 3.35
26 27 9.457436 GTAACCTTAAAATCATTTACTCCCTCA 57.543 33.333 0.00 0.00 30.86 3.86
27 28 9.682465 AGTAACCTTAAAATCATTTACTCCCTC 57.318 33.333 0.00 0.00 30.86 4.30
28 29 9.682465 GAGTAACCTTAAAATCATTTACTCCCT 57.318 33.333 7.72 0.00 39.24 4.20
29 30 9.457436 TGAGTAACCTTAAAATCATTTACTCCC 57.543 33.333 13.86 0.00 42.22 4.30
40 41 9.280174 TCGACAGATTTTGAGTAACCTTAAAAT 57.720 29.630 5.27 5.27 44.77 1.82
41 42 8.665643 TCGACAGATTTTGAGTAACCTTAAAA 57.334 30.769 0.00 0.00 39.56 1.52
42 43 8.842358 ATCGACAGATTTTGAGTAACCTTAAA 57.158 30.769 0.00 0.00 32.03 1.52
43 44 7.548075 GGATCGACAGATTTTGAGTAACCTTAA 59.452 37.037 0.00 0.00 37.19 1.85
44 45 7.039882 GGATCGACAGATTTTGAGTAACCTTA 58.960 38.462 0.00 0.00 37.19 2.69
45 46 5.875359 GGATCGACAGATTTTGAGTAACCTT 59.125 40.000 0.00 0.00 37.19 3.50
46 47 5.046591 TGGATCGACAGATTTTGAGTAACCT 60.047 40.000 0.00 0.00 37.19 3.50
47 48 5.175859 TGGATCGACAGATTTTGAGTAACC 58.824 41.667 0.00 0.00 37.19 2.85
48 49 6.721571 TTGGATCGACAGATTTTGAGTAAC 57.278 37.500 0.00 0.00 37.19 2.50
49 50 6.708502 TGTTTGGATCGACAGATTTTGAGTAA 59.291 34.615 0.00 0.00 37.19 2.24
50 51 6.227522 TGTTTGGATCGACAGATTTTGAGTA 58.772 36.000 0.00 0.00 37.19 2.59
51 52 5.063204 TGTTTGGATCGACAGATTTTGAGT 58.937 37.500 0.00 0.00 37.19 3.41
52 53 5.611796 TGTTTGGATCGACAGATTTTGAG 57.388 39.130 0.00 0.00 37.19 3.02
53 54 6.384258 TTTGTTTGGATCGACAGATTTTGA 57.616 33.333 0.00 0.00 37.19 2.69
54 55 7.596248 AGATTTTGTTTGGATCGACAGATTTTG 59.404 33.333 0.00 0.00 37.19 2.44
55 56 7.596248 CAGATTTTGTTTGGATCGACAGATTTT 59.404 33.333 0.00 0.00 37.19 1.82
56 57 7.086376 CAGATTTTGTTTGGATCGACAGATTT 58.914 34.615 0.00 0.00 37.19 2.17
57 58 6.207417 ACAGATTTTGTTTGGATCGACAGATT 59.793 34.615 0.00 0.00 36.31 2.40
58 59 5.707298 ACAGATTTTGTTTGGATCGACAGAT 59.293 36.000 0.00 0.00 36.31 2.90
59 60 5.063204 ACAGATTTTGTTTGGATCGACAGA 58.937 37.500 0.00 0.00 36.31 3.41
60 61 5.362556 ACAGATTTTGTTTGGATCGACAG 57.637 39.130 0.00 0.00 36.31 3.51
72 73 6.942576 ACTACCTTAGATGCAACAGATTTTGT 59.057 34.615 0.00 0.00 43.45 2.83
73 74 7.383102 ACTACCTTAGATGCAACAGATTTTG 57.617 36.000 0.00 0.00 0.00 2.44
83 84 9.769677 ACCTCATATTATACTACCTTAGATGCA 57.230 33.333 0.00 0.00 0.00 3.96
86 87 9.203163 GCCACCTCATATTATACTACCTTAGAT 57.797 37.037 0.00 0.00 0.00 1.98
87 88 8.174757 TGCCACCTCATATTATACTACCTTAGA 58.825 37.037 0.00 0.00 0.00 2.10
88 89 8.362464 TGCCACCTCATATTATACTACCTTAG 57.638 38.462 0.00 0.00 0.00 2.18
89 90 8.758829 CATGCCACCTCATATTATACTACCTTA 58.241 37.037 0.00 0.00 0.00 2.69
90 91 7.457852 TCATGCCACCTCATATTATACTACCTT 59.542 37.037 0.00 0.00 0.00 3.50
91 92 6.959954 TCATGCCACCTCATATTATACTACCT 59.040 38.462 0.00 0.00 0.00 3.08
92 93 7.124298 TCTCATGCCACCTCATATTATACTACC 59.876 40.741 0.00 0.00 0.00 3.18
93 94 8.067751 TCTCATGCCACCTCATATTATACTAC 57.932 38.462 0.00 0.00 0.00 2.73
94 95 8.116026 TCTCTCATGCCACCTCATATTATACTA 58.884 37.037 0.00 0.00 0.00 1.82
95 96 6.956435 TCTCTCATGCCACCTCATATTATACT 59.044 38.462 0.00 0.00 0.00 2.12
96 97 7.123397 TCTCTCTCATGCCACCTCATATTATAC 59.877 40.741 0.00 0.00 0.00 1.47
97 98 7.123397 GTCTCTCTCATGCCACCTCATATTATA 59.877 40.741 0.00 0.00 0.00 0.98
98 99 6.021672 TCTCTCTCATGCCACCTCATATTAT 58.978 40.000 0.00 0.00 0.00 1.28
99 100 5.244851 GTCTCTCTCATGCCACCTCATATTA 59.755 44.000 0.00 0.00 0.00 0.98
100 101 4.040217 GTCTCTCTCATGCCACCTCATATT 59.960 45.833 0.00 0.00 0.00 1.28
101 102 3.577848 GTCTCTCTCATGCCACCTCATAT 59.422 47.826 0.00 0.00 0.00 1.78
102 103 2.961741 GTCTCTCTCATGCCACCTCATA 59.038 50.000 0.00 0.00 0.00 2.15
103 104 1.761784 GTCTCTCTCATGCCACCTCAT 59.238 52.381 0.00 0.00 0.00 2.90
104 105 1.189752 GTCTCTCTCATGCCACCTCA 58.810 55.000 0.00 0.00 0.00 3.86
105 106 1.136695 CAGTCTCTCTCATGCCACCTC 59.863 57.143 0.00 0.00 0.00 3.85
106 107 1.193323 CAGTCTCTCTCATGCCACCT 58.807 55.000 0.00 0.00 0.00 4.00
107 108 1.189752 TCAGTCTCTCTCATGCCACC 58.810 55.000 0.00 0.00 0.00 4.61
108 109 2.483363 CCATCAGTCTCTCTCATGCCAC 60.483 54.545 0.00 0.00 0.00 5.01
109 110 1.761198 CCATCAGTCTCTCTCATGCCA 59.239 52.381 0.00 0.00 0.00 4.92
110 111 1.070445 CCCATCAGTCTCTCTCATGCC 59.930 57.143 0.00 0.00 0.00 4.40
111 112 1.761784 ACCCATCAGTCTCTCTCATGC 59.238 52.381 0.00 0.00 0.00 4.06
112 113 2.102757 CCACCCATCAGTCTCTCTCATG 59.897 54.545 0.00 0.00 0.00 3.07
113 114 2.396608 CCACCCATCAGTCTCTCTCAT 58.603 52.381 0.00 0.00 0.00 2.90
114 115 1.620798 CCCACCCATCAGTCTCTCTCA 60.621 57.143 0.00 0.00 0.00 3.27
115 116 1.118838 CCCACCCATCAGTCTCTCTC 58.881 60.000 0.00 0.00 0.00 3.20
116 117 0.712979 TCCCACCCATCAGTCTCTCT 59.287 55.000 0.00 0.00 0.00 3.10
117 118 1.118838 CTCCCACCCATCAGTCTCTC 58.881 60.000 0.00 0.00 0.00 3.20
118 119 0.980231 GCTCCCACCCATCAGTCTCT 60.980 60.000 0.00 0.00 0.00 3.10
119 120 1.524482 GCTCCCACCCATCAGTCTC 59.476 63.158 0.00 0.00 0.00 3.36
120 121 1.997874 GGCTCCCACCCATCAGTCT 60.998 63.158 0.00 0.00 0.00 3.24
121 122 2.592308 GGCTCCCACCCATCAGTC 59.408 66.667 0.00 0.00 0.00 3.51
144 145 0.909610 TAAGCCAGAGACCCAGGTGG 60.910 60.000 0.00 0.00 41.37 4.61
145 146 0.539051 CTAAGCCAGAGACCCAGGTG 59.461 60.000 0.00 0.00 0.00 4.00
146 147 0.618968 CCTAAGCCAGAGACCCAGGT 60.619 60.000 0.00 0.00 0.00 4.00
147 148 1.977293 GCCTAAGCCAGAGACCCAGG 61.977 65.000 0.00 0.00 0.00 4.45
148 149 1.524482 GCCTAAGCCAGAGACCCAG 59.476 63.158 0.00 0.00 0.00 4.45
149 150 2.359169 CGCCTAAGCCAGAGACCCA 61.359 63.158 0.00 0.00 34.57 4.51
150 151 2.501610 CGCCTAAGCCAGAGACCC 59.498 66.667 0.00 0.00 34.57 4.46
151 152 2.501610 CCGCCTAAGCCAGAGACC 59.498 66.667 0.00 0.00 34.57 3.85
152 153 2.202946 GCCGCCTAAGCCAGAGAC 60.203 66.667 0.00 0.00 34.57 3.36
153 154 2.683572 TGCCGCCTAAGCCAGAGA 60.684 61.111 0.00 0.00 34.57 3.10
154 155 2.202987 CTGCCGCCTAAGCCAGAG 60.203 66.667 0.00 0.00 31.91 3.35
155 156 2.683572 TCTGCCGCCTAAGCCAGA 60.684 61.111 0.00 0.00 35.65 3.86
156 157 2.512515 GTCTGCCGCCTAAGCCAG 60.513 66.667 0.00 0.00 34.57 4.85
157 158 3.315142 CTGTCTGCCGCCTAAGCCA 62.315 63.158 0.00 0.00 34.57 4.75
158 159 2.512515 CTGTCTGCCGCCTAAGCC 60.513 66.667 0.00 0.00 34.57 4.35
159 160 1.520342 CTCTGTCTGCCGCCTAAGC 60.520 63.158 0.00 0.00 0.00 3.09
160 161 0.532573 TTCTCTGTCTGCCGCCTAAG 59.467 55.000 0.00 0.00 0.00 2.18
161 162 0.246635 GTTCTCTGTCTGCCGCCTAA 59.753 55.000 0.00 0.00 0.00 2.69
162 163 1.605058 GGTTCTCTGTCTGCCGCCTA 61.605 60.000 0.00 0.00 0.00 3.93
163 164 2.659610 GTTCTCTGTCTGCCGCCT 59.340 61.111 0.00 0.00 0.00 5.52
164 165 2.435059 GGTTCTCTGTCTGCCGCC 60.435 66.667 0.00 0.00 0.00 6.13
165 166 2.029844 GTGGTTCTCTGTCTGCCGC 61.030 63.158 0.00 0.00 0.00 6.53
166 167 1.734477 CGTGGTTCTCTGTCTGCCG 60.734 63.158 0.00 0.00 0.00 5.69
167 168 2.029844 GCGTGGTTCTCTGTCTGCC 61.030 63.158 0.00 0.00 0.00 4.85
168 169 2.029844 GGCGTGGTTCTCTGTCTGC 61.030 63.158 0.00 0.00 0.00 4.26
169 170 1.374758 GGGCGTGGTTCTCTGTCTG 60.375 63.158 0.00 0.00 0.00 3.51
170 171 1.122019 AAGGGCGTGGTTCTCTGTCT 61.122 55.000 0.00 0.00 0.00 3.41
171 172 0.670854 GAAGGGCGTGGTTCTCTGTC 60.671 60.000 0.00 0.00 0.00 3.51
172 173 1.371558 GAAGGGCGTGGTTCTCTGT 59.628 57.895 0.00 0.00 0.00 3.41
173 174 0.951040 GTGAAGGGCGTGGTTCTCTG 60.951 60.000 0.00 0.00 0.00 3.35
174 175 1.122019 AGTGAAGGGCGTGGTTCTCT 61.122 55.000 0.00 0.00 0.00 3.10
175 176 0.670854 GAGTGAAGGGCGTGGTTCTC 60.671 60.000 0.00 0.00 0.00 2.87
176 177 1.371558 GAGTGAAGGGCGTGGTTCT 59.628 57.895 0.00 0.00 0.00 3.01
177 178 1.671379 GGAGTGAAGGGCGTGGTTC 60.671 63.158 0.00 0.00 0.00 3.62
178 179 2.430367 GGAGTGAAGGGCGTGGTT 59.570 61.111 0.00 0.00 0.00 3.67
179 180 2.847234 TGGAGTGAAGGGCGTGGT 60.847 61.111 0.00 0.00 0.00 4.16
180 181 2.358737 GTGGAGTGAAGGGCGTGG 60.359 66.667 0.00 0.00 0.00 4.94
181 182 2.358737 GGTGGAGTGAAGGGCGTG 60.359 66.667 0.00 0.00 0.00 5.34
182 183 2.847234 TGGTGGAGTGAAGGGCGT 60.847 61.111 0.00 0.00 0.00 5.68
183 184 2.358737 GTGGTGGAGTGAAGGGCG 60.359 66.667 0.00 0.00 0.00 6.13
184 185 2.034221 GGTGGTGGAGTGAAGGGC 59.966 66.667 0.00 0.00 0.00 5.19
185 186 2.347490 CGGTGGTGGAGTGAAGGG 59.653 66.667 0.00 0.00 0.00 3.95
186 187 2.347490 CCGGTGGTGGAGTGAAGG 59.653 66.667 0.00 0.00 0.00 3.46
187 188 2.358737 GCCGGTGGTGGAGTGAAG 60.359 66.667 1.90 0.00 0.00 3.02
188 189 3.948719 GGCCGGTGGTGGAGTGAA 61.949 66.667 1.90 0.00 0.00 3.18
203 204 4.313675 GAAATCGCGATGGCCGGC 62.314 66.667 24.47 21.18 39.04 6.13
204 205 3.649986 GGAAATCGCGATGGCCGG 61.650 66.667 24.47 0.00 39.04 6.13
205 206 3.649986 GGGAAATCGCGATGGCCG 61.650 66.667 24.47 0.00 42.21 6.13
206 207 3.287520 GGGGAAATCGCGATGGCC 61.288 66.667 24.47 24.57 35.02 5.36
207 208 1.455383 AATGGGGAAATCGCGATGGC 61.455 55.000 24.47 17.05 0.00 4.40
208 209 0.593128 GAATGGGGAAATCGCGATGG 59.407 55.000 24.47 0.00 0.00 3.51
209 210 0.593128 GGAATGGGGAAATCGCGATG 59.407 55.000 24.47 0.00 0.00 3.84
210 211 0.537371 GGGAATGGGGAAATCGCGAT 60.537 55.000 17.62 17.62 0.00 4.58
211 212 1.153046 GGGAATGGGGAAATCGCGA 60.153 57.895 13.09 13.09 0.00 5.87
212 213 1.152963 AGGGAATGGGGAAATCGCG 60.153 57.895 0.00 0.00 0.00 5.87
213 214 1.166531 CGAGGGAATGGGGAAATCGC 61.167 60.000 0.00 0.00 0.00 4.58
214 215 1.166531 GCGAGGGAATGGGGAAATCG 61.167 60.000 0.00 0.00 0.00 3.34
215 216 0.823769 GGCGAGGGAATGGGGAAATC 60.824 60.000 0.00 0.00 0.00 2.17
216 217 1.230212 GGCGAGGGAATGGGGAAAT 59.770 57.895 0.00 0.00 0.00 2.17
217 218 2.680965 GGCGAGGGAATGGGGAAA 59.319 61.111 0.00 0.00 0.00 3.13
218 219 3.792736 CGGCGAGGGAATGGGGAA 61.793 66.667 0.00 0.00 0.00 3.97
249 250 3.818787 GATGCAGCTTGGGTGGCG 61.819 66.667 0.00 0.00 34.52 5.69
250 251 1.610554 ATTGATGCAGCTTGGGTGGC 61.611 55.000 2.53 0.00 0.00 5.01
251 252 0.458669 GATTGATGCAGCTTGGGTGG 59.541 55.000 2.53 0.00 0.00 4.61
252 253 1.404391 GAGATTGATGCAGCTTGGGTG 59.596 52.381 2.53 0.00 0.00 4.61
253 254 1.684248 GGAGATTGATGCAGCTTGGGT 60.684 52.381 2.53 0.00 0.00 4.51
254 255 1.030457 GGAGATTGATGCAGCTTGGG 58.970 55.000 2.53 0.00 0.00 4.12
255 256 2.054232 AGGAGATTGATGCAGCTTGG 57.946 50.000 2.53 0.00 0.00 3.61
256 257 3.280295 AGAAGGAGATTGATGCAGCTTG 58.720 45.455 2.53 0.00 0.00 4.01
257 258 3.543665 GAGAAGGAGATTGATGCAGCTT 58.456 45.455 2.53 0.00 0.00 3.74
258 259 2.158784 GGAGAAGGAGATTGATGCAGCT 60.159 50.000 2.53 0.00 0.00 4.24
259 260 2.220313 GGAGAAGGAGATTGATGCAGC 58.780 52.381 0.00 0.00 0.00 5.25
260 261 2.102084 TCGGAGAAGGAGATTGATGCAG 59.898 50.000 0.00 0.00 0.00 4.41
261 262 2.110578 TCGGAGAAGGAGATTGATGCA 58.889 47.619 0.00 0.00 0.00 3.96
262 263 2.478831 GTCGGAGAAGGAGATTGATGC 58.521 52.381 0.00 0.00 39.69 3.91
263 264 2.736978 CGTCGGAGAAGGAGATTGATG 58.263 52.381 0.00 0.00 39.69 3.07
317 318 3.322318 GACAGGAGCTGGGTGAGGC 62.322 68.421 0.00 0.00 35.51 4.70
328 329 1.801913 CGGAGCGAAACGACAGGAG 60.802 63.158 0.00 0.00 0.00 3.69
351 352 2.593978 CTGGGCTGGGAGATGGTG 59.406 66.667 0.00 0.00 0.00 4.17
352 353 3.415087 GCTGGGCTGGGAGATGGT 61.415 66.667 0.00 0.00 0.00 3.55
401 408 4.760047 CCACGACGAAGCCAGGGG 62.760 72.222 0.00 0.00 0.00 4.79
406 413 1.310933 TAGTCCTCCACGACGAAGCC 61.311 60.000 0.00 0.00 37.85 4.35
423 430 2.490217 CAGGTGGCGACGAGGTAG 59.510 66.667 0.00 0.00 0.00 3.18
495 502 2.043772 TCGGGATTGGTGGGGGAT 59.956 61.111 0.00 0.00 0.00 3.85
502 509 4.752879 CACGGCGTCGGGATTGGT 62.753 66.667 16.39 0.00 43.65 3.67
558 565 3.032609 GCGACGATGGAGGCGATG 61.033 66.667 0.00 0.00 0.00 3.84
559 566 4.286320 GGCGACGATGGAGGCGAT 62.286 66.667 0.00 0.00 0.00 4.58
565 572 2.577059 GTCCTTGGCGACGATGGA 59.423 61.111 0.00 0.00 0.00 3.41
568 575 4.143333 CGGGTCCTTGGCGACGAT 62.143 66.667 0.00 0.00 33.30 3.73
591 598 0.514691 CTCCACTTTTGTCGCAGAGC 59.485 55.000 0.00 0.00 36.95 4.09
599 606 2.158608 CCAGGGTTCTCTCCACTTTTGT 60.159 50.000 0.00 0.00 0.00 2.83
602 609 0.402121 GCCAGGGTTCTCTCCACTTT 59.598 55.000 0.00 0.00 0.00 2.66
603 610 1.492993 GGCCAGGGTTCTCTCCACTT 61.493 60.000 0.00 0.00 0.00 3.16
604 611 1.920835 GGCCAGGGTTCTCTCCACT 60.921 63.158 0.00 0.00 0.00 4.00
622 629 1.272114 GAGGCGCGCGATCTAAGAAG 61.272 60.000 37.18 0.00 0.00 2.85
623 630 1.299165 GAGGCGCGCGATCTAAGAA 60.299 57.895 37.18 0.00 0.00 2.52
624 631 2.331805 GAGGCGCGCGATCTAAGA 59.668 61.111 37.18 0.00 0.00 2.10
626 633 3.802008 GACGAGGCGCGCGATCTAA 62.802 63.158 37.18 0.00 46.04 2.10
657 702 1.818674 GGATCTGCACCGGAATTTGTT 59.181 47.619 9.46 0.00 0.00 2.83
668 713 0.461548 TGGAGACGATGGATCTGCAC 59.538 55.000 0.00 0.00 39.34 4.57
689 734 6.038382 CGAAGAAGTGCAGGTAGTATTCTAGA 59.962 42.308 0.00 0.00 0.00 2.43
729 774 2.676265 GCTTAAGAGGCCGGGGGAA 61.676 63.158 6.67 0.00 0.00 3.97
738 783 2.158959 CGTGGTCGCGCTTAAGAGG 61.159 63.158 6.67 0.00 0.00 3.69
740 785 2.126228 CCGTGGTCGCGCTTAAGA 60.126 61.111 6.67 0.00 35.54 2.10
743 788 4.789075 GAGCCGTGGTCGCGCTTA 62.789 66.667 5.56 0.00 41.12 3.09
807 852 2.355837 GCACTCACGCAGGAACGA 60.356 61.111 0.00 0.00 36.70 3.85
818 863 1.264749 AATCACCTAGCCCGCACTCA 61.265 55.000 0.00 0.00 0.00 3.41
855 900 1.072489 CATCCATGGCTGAGAGATGCT 59.928 52.381 10.16 0.00 0.00 3.79
912 957 0.533531 CCTATGCCTTCTGCGCATGA 60.534 55.000 12.24 8.13 46.24 3.07
920 965 0.912486 GGGACACACCTATGCCTTCT 59.088 55.000 0.00 0.00 38.98 2.85
936 981 3.950794 GAATGCGACAGCCACGGGA 62.951 63.158 0.00 0.00 44.33 5.14
962 1036 2.095461 CTCTGTCGGTGATCTTCTCCA 58.905 52.381 0.00 0.00 30.74 3.86
977 1063 5.317808 TGCTCTTCAAGTAGTCTACTCTGT 58.682 41.667 12.98 0.00 38.26 3.41
1034 1120 1.566231 CCCTTGGAGCCCTAGAAACAT 59.434 52.381 0.00 0.00 0.00 2.71
1043 1129 2.677875 CAAGCACCCTTGGAGCCC 60.678 66.667 0.00 0.00 43.75 5.19
1052 1138 0.883833 CTTGGACATCACAAGCACCC 59.116 55.000 0.00 0.00 38.89 4.61
1059 1145 3.743521 CAGAAAGTCCTTGGACATCACA 58.256 45.455 20.36 0.00 0.00 3.58
1082 1168 2.487934 TGAGAAACTCTGACTTGCTGC 58.512 47.619 0.00 0.00 0.00 5.25
1083 1169 4.567971 AGATGAGAAACTCTGACTTGCTG 58.432 43.478 0.00 0.00 0.00 4.41
1098 1184 0.558220 ATCCCACCTCGGAGATGAGA 59.442 55.000 6.58 0.00 38.28 3.27
1122 1208 1.312371 TTTGAGCAATGTAGGCCGGC 61.312 55.000 21.18 21.18 0.00 6.13
1141 1227 1.078143 GAGTGAGAATTGCCGGCCT 60.078 57.895 26.77 14.16 0.00 5.19
1176 1262 0.040058 TGTAGTGTCGGGGCCTAAGA 59.960 55.000 0.84 0.00 0.00 2.10
1179 1265 2.457813 TAATGTAGTGTCGGGGCCTA 57.542 50.000 0.84 0.00 0.00 3.93
1215 1354 6.496911 TCCGATCATTCTCCAGTAATCCATTA 59.503 38.462 0.00 0.00 0.00 1.90
1224 1363 1.786937 AGCTCCGATCATTCTCCAGT 58.213 50.000 0.00 0.00 0.00 4.00
1227 1366 4.461081 ACATAGTAGCTCCGATCATTCTCC 59.539 45.833 0.00 0.00 0.00 3.71
1231 1370 3.366476 GCGACATAGTAGCTCCGATCATT 60.366 47.826 0.00 0.00 31.72 2.57
1250 1389 1.450025 ATCACTCACTACGACTGCGA 58.550 50.000 0.00 0.00 41.64 5.10
1260 1399 7.323420 TCTTCATGAAATCGTTATCACTCACT 58.677 34.615 9.88 0.00 0.00 3.41
1272 1411 7.293745 GGCATATGTACTTCTTCATGAAATCG 58.706 38.462 9.88 3.07 33.79 3.34
1274 1413 7.293073 AGGGCATATGTACTTCTTCATGAAAT 58.707 34.615 9.88 0.81 33.79 2.17
1275 1414 6.662755 AGGGCATATGTACTTCTTCATGAAA 58.337 36.000 9.88 0.00 33.79 2.69
1303 1442 3.730761 GTGCGGCACAGCTTCCTG 61.731 66.667 27.10 0.00 44.80 3.86
1327 1466 1.202154 GCAAGCAGCAGCATAGTCTTG 60.202 52.381 3.17 0.00 45.49 3.02
1367 1506 3.760151 CCTGGCTCATGTGAATCTGAAAA 59.240 43.478 0.00 0.00 0.00 2.29
1420 1559 1.103803 ACAGACATACGACGGCAGAT 58.896 50.000 0.00 0.00 0.00 2.90
1426 1565 3.043586 GGCATCTAACAGACATACGACG 58.956 50.000 0.00 0.00 0.00 5.12
1429 1574 2.394708 CCGGCATCTAACAGACATACG 58.605 52.381 0.00 0.00 0.00 3.06
1447 1592 1.679153 ACTTTAGCAACAACCAACCCG 59.321 47.619 0.00 0.00 0.00 5.28
1465 1610 7.630242 ATCAAATTATCCGTTTCATCACACT 57.370 32.000 0.00 0.00 0.00 3.55
1478 1623 8.078596 GCACAGTATTCAGGAATCAAATTATCC 58.921 37.037 0.00 0.00 32.50 2.59
1490 1635 2.290832 TGGCATTGCACAGTATTCAGGA 60.291 45.455 11.39 0.00 0.00 3.86
1515 1663 3.394274 TCCATGGTTTCTTCTCTGTTGGA 59.606 43.478 12.58 0.00 0.00 3.53
1516 1664 3.754965 TCCATGGTTTCTTCTCTGTTGG 58.245 45.455 12.58 0.00 0.00 3.77
1519 1667 3.760684 GCAATCCATGGTTTCTTCTCTGT 59.239 43.478 12.58 0.00 0.00 3.41
1541 1689 9.840427 ATGAACGAGGACAACAAATTTAATAAG 57.160 29.630 0.00 0.00 0.00 1.73
1546 1694 6.627395 ACATGAACGAGGACAACAAATTTA 57.373 33.333 0.00 0.00 0.00 1.40
1549 1697 5.514274 AAACATGAACGAGGACAACAAAT 57.486 34.783 0.00 0.00 0.00 2.32
1553 1703 6.748198 TGTTTAAAAACATGAACGAGGACAAC 59.252 34.615 0.00 0.00 43.45 3.32
1590 1742 2.241160 ACAATGAAGAATGTGCCAGCA 58.759 42.857 0.00 0.00 0.00 4.41
1591 1743 4.644103 ATACAATGAAGAATGTGCCAGC 57.356 40.909 0.00 0.00 0.00 4.85
1592 1744 8.984891 TTTTAATACAATGAAGAATGTGCCAG 57.015 30.769 0.00 0.00 0.00 4.85
1593 1745 9.941325 AATTTTAATACAATGAAGAATGTGCCA 57.059 25.926 0.00 0.00 0.00 4.92
1653 1821 3.954258 ACCTTACCTTGGCTTATTGCATC 59.046 43.478 0.00 0.00 45.15 3.91
1654 1822 3.954258 GACCTTACCTTGGCTTATTGCAT 59.046 43.478 0.00 0.00 45.15 3.96
1655 1823 3.010138 AGACCTTACCTTGGCTTATTGCA 59.990 43.478 0.00 0.00 45.15 4.08
1656 1824 3.621558 AGACCTTACCTTGGCTTATTGC 58.378 45.455 0.00 0.00 41.94 3.56
1661 1829 2.046280 AGGAGACCTTACCTTGGCTT 57.954 50.000 0.00 0.00 31.95 4.35
1735 1906 7.933577 GGTGTCATAGTGATCCTCAAATTATCA 59.066 37.037 0.00 0.00 0.00 2.15
1752 1923 5.594317 CCTAAATTTGGGAAGGGTGTCATAG 59.406 44.000 15.17 0.00 0.00 2.23
1754 1925 4.202781 ACCTAAATTTGGGAAGGGTGTCAT 60.203 41.667 25.78 0.00 33.16 3.06
1788 1959 2.230992 CAGGCGAATTGACCATTCCAAA 59.769 45.455 0.00 0.00 38.54 3.28
1793 1964 0.323725 AGCCAGGCGAATTGACCATT 60.324 50.000 5.55 0.00 0.00 3.16
1795 1966 0.539438 AAAGCCAGGCGAATTGACCA 60.539 50.000 5.55 0.00 0.00 4.02
1852 2173 7.761409 TCTACATATGAGCAAACCAAAATGAC 58.239 34.615 10.38 0.00 0.00 3.06
1964 2344 2.912956 ACCTCTGATCCAACTAAAGGCA 59.087 45.455 0.00 0.00 0.00 4.75
1965 2345 3.636153 ACCTCTGATCCAACTAAAGGC 57.364 47.619 0.00 0.00 0.00 4.35
1995 2375 0.911769 TCCAATCTGACCGATGGCTT 59.088 50.000 0.00 0.00 31.20 4.35
2008 2388 2.092323 GCCCAGTAGGTGTTTCCAATC 58.908 52.381 0.00 0.00 39.02 2.67
2017 2397 2.270205 CCTGCAGCCCAGTAGGTG 59.730 66.667 8.66 0.00 40.06 4.00
2175 2568 8.106462 TCTCCATTGTCTCAATAACATTACCAA 58.894 33.333 0.00 0.00 0.00 3.67
2209 2602 4.019792 TGACAATAACATCACTGGCAGT 57.980 40.909 15.88 15.88 0.00 4.40
2228 2621 4.707105 TCAGTGCTTCTTTGTCTCAATGA 58.293 39.130 0.00 0.00 30.74 2.57
2229 2622 5.624344 ATCAGTGCTTCTTTGTCTCAATG 57.376 39.130 0.00 0.00 0.00 2.82
2230 2623 6.645790 AAATCAGTGCTTCTTTGTCTCAAT 57.354 33.333 0.00 0.00 0.00 2.57
2231 2624 6.127647 ACAAAATCAGTGCTTCTTTGTCTCAA 60.128 34.615 6.11 0.00 35.82 3.02
2232 2625 5.357878 ACAAAATCAGTGCTTCTTTGTCTCA 59.642 36.000 6.11 0.00 35.82 3.27
2233 2626 5.825507 ACAAAATCAGTGCTTCTTTGTCTC 58.174 37.500 6.11 0.00 35.82 3.36
2258 2651 7.709947 AGCATGAAAATCCACAATATACACAG 58.290 34.615 0.00 0.00 0.00 3.66
2292 2686 2.652941 ACGCATGGTTTTTATGGCTG 57.347 45.000 0.00 0.00 0.00 4.85
2293 2687 3.676291 AAACGCATGGTTTTTATGGCT 57.324 38.095 6.51 0.00 46.52 4.75
2302 2696 3.119173 CCATCCACAATAAACGCATGGTT 60.119 43.478 0.00 0.00 41.76 3.67
2303 2697 2.426738 CCATCCACAATAAACGCATGGT 59.573 45.455 0.00 0.00 0.00 3.55
2304 2698 2.799207 GCCATCCACAATAAACGCATGG 60.799 50.000 0.00 0.00 33.72 3.66
2309 2703 1.745087 AGCTGCCATCCACAATAAACG 59.255 47.619 0.00 0.00 0.00 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.