Multiple sequence alignment - TraesCS2B01G121200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G121200 chr2B 100.000 3908 0 0 1 3908 88844837 88848744 0.000000e+00 7217.0
1 TraesCS2B01G121200 chr2D 91.667 1308 79 11 1293 2582 56109533 56110828 0.000000e+00 1784.0
2 TraesCS2B01G121200 chr2D 90.993 755 41 13 3159 3908 56111449 56112181 0.000000e+00 992.0
3 TraesCS2B01G121200 chr2D 94.632 503 17 6 2578 3072 56110949 56111449 0.000000e+00 771.0
4 TraesCS2B01G121200 chr2D 86.111 504 34 18 694 1180 56109002 56109486 9.690000e-141 510.0
5 TraesCS2B01G121200 chr2D 74.294 354 62 29 81 415 74784337 74784680 5.300000e-24 122.0
6 TraesCS2B01G121200 chr2D 95.238 63 2 1 1202 1264 605918813 605918874 8.940000e-17 99.0
7 TraesCS2B01G121200 chr2D 84.507 71 6 4 2873 2938 56190706 56190776 9.060000e-07 65.8
8 TraesCS2B01G121200 chr2A 88.100 1479 113 27 1254 2693 57697971 57699425 0.000000e+00 1698.0
9 TraesCS2B01G121200 chr2A 90.433 763 33 11 3159 3908 57699767 57700502 0.000000e+00 968.0
10 TraesCS2B01G121200 chr2A 91.092 348 19 7 2734 3072 57699423 57699767 9.890000e-126 460.0
11 TraesCS2B01G121200 chr2A 80.936 598 45 24 555 1113 57696986 57697553 3.630000e-110 409.0
12 TraesCS2B01G121200 chr2A 95.745 94 4 0 3068 3161 777289167 777289260 6.760000e-33 152.0
13 TraesCS2B01G121200 chr2A 94.737 95 4 1 3065 3159 207651875 207651968 3.150000e-31 147.0
14 TraesCS2B01G121200 chr2A 92.233 103 8 0 3063 3165 694863809 694863707 3.150000e-31 147.0
15 TraesCS2B01G121200 chr2A 82.558 86 9 5 298 377 590789121 590789036 1.950000e-08 71.3
16 TraesCS2B01G121200 chr7B 81.549 710 101 17 1998 2688 495171602 495172300 3.410000e-155 558.0
17 TraesCS2B01G121200 chr7B 76.585 205 30 18 201 392 368429870 368429671 3.210000e-16 97.1
18 TraesCS2B01G121200 chr7D 80.635 315 39 13 1302 1600 471236491 471236799 1.410000e-54 224.0
19 TraesCS2B01G121200 chr5A 97.753 89 2 0 3066 3154 38143951 38144039 1.880000e-33 154.0
20 TraesCS2B01G121200 chr5A 96.667 90 3 0 3069 3158 332947291 332947202 2.430000e-32 150.0
21 TraesCS2B01G121200 chr5A 95.652 92 4 0 3069 3160 640431569 640431660 8.750000e-32 148.0
22 TraesCS2B01G121200 chr7A 92.308 104 8 0 3060 3163 209406221 209406118 8.750000e-32 148.0
23 TraesCS2B01G121200 chr7A 96.667 60 2 0 1202 1261 2582058 2581999 2.480000e-17 100.0
24 TraesCS2B01G121200 chr7A 95.082 61 3 0 1196 1256 657371916 657371976 3.210000e-16 97.1
25 TraesCS2B01G121200 chr3B 92.857 98 6 1 3062 3159 22211117 22211213 1.460000e-29 141.0
26 TraesCS2B01G121200 chr1A 89.286 112 9 2 3055 3163 40555750 40555861 1.890000e-28 137.0
27 TraesCS2B01G121200 chr4D 98.246 57 1 0 1202 1258 106514758 106514814 2.480000e-17 100.0
28 TraesCS2B01G121200 chr4D 93.750 64 3 1 1202 1265 289342882 289342820 1.160000e-15 95.3
29 TraesCS2B01G121200 chr1D 95.161 62 3 0 1202 1263 44645313 44645374 8.940000e-17 99.0
30 TraesCS2B01G121200 chr3D 93.846 65 2 2 1202 1264 496172830 496172894 3.210000e-16 97.1
31 TraesCS2B01G121200 chr3D 90.000 70 6 1 1202 1271 600658215 600658283 5.380000e-14 89.8
32 TraesCS2B01G121200 chr3D 81.651 109 13 6 291 393 540221238 540221345 2.500000e-12 84.2
33 TraesCS2B01G121200 chr5B 92.424 66 4 1 1202 1266 659762041 659761976 4.160000e-15 93.5
34 TraesCS2B01G121200 chr6B 74.689 241 36 22 195 416 63388321 63388087 2.500000e-12 84.2
35 TraesCS2B01G121200 chr6A 89.231 65 6 1 308 372 185235961 185235898 3.240000e-11 80.5
36 TraesCS2B01G121200 chr6A 80.000 105 15 6 319 417 574565629 574565733 5.420000e-09 73.1
37 TraesCS2B01G121200 chr6D 81.000 100 15 4 298 393 389611697 389611598 4.190000e-10 76.8
38 TraesCS2B01G121200 chr3A 76.259 139 26 7 280 412 669561439 669561302 2.520000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G121200 chr2B 88844837 88848744 3907 False 7217.00 7217 100.00000 1 3908 1 chr2B.!!$F1 3907
1 TraesCS2B01G121200 chr2D 56109002 56112181 3179 False 1014.25 1784 90.85075 694 3908 4 chr2D.!!$F4 3214
2 TraesCS2B01G121200 chr2A 57696986 57700502 3516 False 883.75 1698 87.64025 555 3908 4 chr2A.!!$F3 3353
3 TraesCS2B01G121200 chr7B 495171602 495172300 698 False 558.00 558 81.54900 1998 2688 1 chr7B.!!$F1 690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
492 493 0.164217 CAGCGCGGCTACGTTTTAAA 59.836 50.0 8.83 0.00 43.45 1.52 F
1404 1785 0.037232 CGGGAACTGAACTGAGGGTC 60.037 60.0 0.00 0.00 36.31 4.46 F
1617 2019 0.401395 TTGGAGGGGGAACTGACAGT 60.401 55.0 1.07 1.07 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1447 1828 0.181114 TCTCCCATGCCAGAAATCGG 59.819 55.0 0.00 0.00 0.00 4.18 R
2828 3392 0.394192 TGAAGACCCACACTGCAGAG 59.606 55.0 23.35 16.23 0.00 3.35 R
3404 3980 0.035056 ATGAACCGAAGCCCTCAAGG 60.035 55.0 0.00 0.00 39.47 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.766404 CCTCGCCAGTTTTGATTACTTT 57.234 40.909 0.00 0.00 0.00 2.66
22 23 5.121221 CCTCGCCAGTTTTGATTACTTTT 57.879 39.130 0.00 0.00 0.00 2.27
23 24 5.154222 CCTCGCCAGTTTTGATTACTTTTC 58.846 41.667 0.00 0.00 0.00 2.29
24 25 5.116069 TCGCCAGTTTTGATTACTTTTCC 57.884 39.130 0.00 0.00 0.00 3.13
25 26 4.825085 TCGCCAGTTTTGATTACTTTTCCT 59.175 37.500 0.00 0.00 0.00 3.36
26 27 5.300792 TCGCCAGTTTTGATTACTTTTCCTT 59.699 36.000 0.00 0.00 0.00 3.36
27 28 5.402270 CGCCAGTTTTGATTACTTTTCCTTG 59.598 40.000 0.00 0.00 0.00 3.61
28 29 6.280643 GCCAGTTTTGATTACTTTTCCTTGT 58.719 36.000 0.00 0.00 0.00 3.16
29 30 6.761242 GCCAGTTTTGATTACTTTTCCTTGTT 59.239 34.615 0.00 0.00 0.00 2.83
30 31 7.279981 GCCAGTTTTGATTACTTTTCCTTGTTT 59.720 33.333 0.00 0.00 0.00 2.83
31 32 9.161629 CCAGTTTTGATTACTTTTCCTTGTTTT 57.838 29.630 0.00 0.00 0.00 2.43
132 133 7.138692 AGATGTACTTCTTTTGATTGTGAGC 57.861 36.000 5.47 0.00 0.00 4.26
133 134 6.939163 AGATGTACTTCTTTTGATTGTGAGCT 59.061 34.615 5.47 0.00 0.00 4.09
134 135 6.942532 TGTACTTCTTTTGATTGTGAGCTT 57.057 33.333 0.00 0.00 0.00 3.74
135 136 7.333528 TGTACTTCTTTTGATTGTGAGCTTT 57.666 32.000 0.00 0.00 0.00 3.51
136 137 7.771183 TGTACTTCTTTTGATTGTGAGCTTTT 58.229 30.769 0.00 0.00 0.00 2.27
137 138 8.250332 TGTACTTCTTTTGATTGTGAGCTTTTT 58.750 29.630 0.00 0.00 0.00 1.94
192 193 9.940166 AGATTTTGTTTGAAAATCAATGAAAGC 57.060 25.926 17.69 2.00 44.74 3.51
193 194 9.940166 GATTTTGTTTGAAAATCAATGAAAGCT 57.060 25.926 12.76 0.00 42.91 3.74
197 198 9.771915 TTGTTTGAAAATCAATGAAAGCTTTTC 57.228 25.926 14.05 10.98 36.11 2.29
198 199 8.944029 TGTTTGAAAATCAATGAAAGCTTTTCA 58.056 25.926 14.05 14.74 41.49 2.69
199 200 9.429600 GTTTGAAAATCAATGAAAGCTTTTCAG 57.570 29.630 14.05 4.49 43.02 3.02
200 201 8.945481 TTGAAAATCAATGAAAGCTTTTCAGA 57.055 26.923 14.05 9.71 43.02 3.27
201 202 8.945481 TGAAAATCAATGAAAGCTTTTCAGAA 57.055 26.923 14.05 0.14 39.55 3.02
202 203 9.550406 TGAAAATCAATGAAAGCTTTTCAGAAT 57.450 25.926 14.05 2.60 39.55 2.40
206 207 9.774413 AATCAATGAAAGCTTTTCAGAATTTCT 57.226 25.926 14.05 0.00 32.40 2.52
207 208 8.583810 TCAATGAAAGCTTTTCAGAATTTCTG 57.416 30.769 18.49 18.49 45.59 3.02
250 251 9.581099 TGAACTTTTTCTAAAATCAAGGAACAC 57.419 29.630 0.00 0.00 32.36 3.32
251 252 9.803315 GAACTTTTTCTAAAATCAAGGAACACT 57.197 29.630 0.00 0.00 0.00 3.55
264 265 9.810545 AATCAAGGAACACTTTTTAAAAATCGA 57.189 25.926 13.55 0.00 37.29 3.59
265 266 9.981114 ATCAAGGAACACTTTTTAAAAATCGAT 57.019 25.926 13.55 0.00 37.29 3.59
266 267 9.243637 TCAAGGAACACTTTTTAAAAATCGATG 57.756 29.630 13.55 11.67 37.29 3.84
267 268 9.243637 CAAGGAACACTTTTTAAAAATCGATGA 57.756 29.630 13.55 0.00 37.29 2.92
268 269 9.463443 AAGGAACACTTTTTAAAAATCGATGAG 57.537 29.630 13.55 3.27 35.35 2.90
269 270 8.630037 AGGAACACTTTTTAAAAATCGATGAGT 58.370 29.630 13.55 3.87 0.00 3.41
270 271 9.887406 GGAACACTTTTTAAAAATCGATGAGTA 57.113 29.630 13.55 0.00 0.00 2.59
285 286 9.784531 AATCGATGAGTATATCTTCCAATTTGT 57.215 29.630 0.00 0.00 0.00 2.83
286 287 8.593492 TCGATGAGTATATCTTCCAATTTGTG 57.407 34.615 0.00 0.00 0.00 3.33
287 288 8.421002 TCGATGAGTATATCTTCCAATTTGTGA 58.579 33.333 0.00 0.00 0.00 3.58
288 289 9.212641 CGATGAGTATATCTTCCAATTTGTGAT 57.787 33.333 0.00 0.01 0.00 3.06
324 325 9.447157 AAATTGACAAACTTTTCTCCAAATTGA 57.553 25.926 0.00 0.00 0.00 2.57
325 326 9.617523 AATTGACAAACTTTTCTCCAAATTGAT 57.382 25.926 0.00 0.00 0.00 2.57
326 327 8.422973 TTGACAAACTTTTCTCCAAATTGATG 57.577 30.769 0.00 0.00 0.00 3.07
327 328 7.780064 TGACAAACTTTTCTCCAAATTGATGA 58.220 30.769 0.00 0.00 0.00 2.92
328 329 8.256605 TGACAAACTTTTCTCCAAATTGATGAA 58.743 29.630 0.00 0.00 0.00 2.57
329 330 8.424274 ACAAACTTTTCTCCAAATTGATGAAC 57.576 30.769 0.00 0.00 0.00 3.18
330 331 8.040132 ACAAACTTTTCTCCAAATTGATGAACA 58.960 29.630 0.00 0.00 0.00 3.18
331 332 9.048446 CAAACTTTTCTCCAAATTGATGAACAT 57.952 29.630 0.00 0.00 0.00 2.71
332 333 9.617523 AAACTTTTCTCCAAATTGATGAACATT 57.382 25.926 0.00 0.00 0.00 2.71
333 334 9.617523 AACTTTTCTCCAAATTGATGAACATTT 57.382 25.926 0.00 0.00 0.00 2.32
334 335 9.617523 ACTTTTCTCCAAATTGATGAACATTTT 57.382 25.926 0.00 0.00 33.97 1.82
337 338 9.610705 TTTCTCCAAATTGATGAACATTTTTCA 57.389 25.926 0.00 0.00 32.18 2.69
338 339 9.610705 TTCTCCAAATTGATGAACATTTTTCAA 57.389 25.926 0.00 0.00 32.18 2.69
339 340 9.610705 TCTCCAAATTGATGAACATTTTTCAAA 57.389 25.926 0.00 0.00 32.18 2.69
347 348 9.473640 TTGATGAACATTTTTCAAAATCGATGA 57.526 25.926 0.00 0.00 36.52 2.92
348 349 9.473640 TGATGAACATTTTTCAAAATCGATGAA 57.526 25.926 0.00 0.00 36.52 2.57
349 350 9.731519 GATGAACATTTTTCAAAATCGATGAAC 57.268 29.630 0.00 0.00 36.52 3.18
350 351 8.870160 TGAACATTTTTCAAAATCGATGAACT 57.130 26.923 0.00 0.00 36.52 3.01
351 352 9.311916 TGAACATTTTTCAAAATCGATGAACTT 57.688 25.926 0.00 0.00 36.52 2.66
352 353 9.571804 GAACATTTTTCAAAATCGATGAACTTG 57.428 29.630 0.00 1.15 36.52 3.16
353 354 8.647143 ACATTTTTCAAAATCGATGAACTTGT 57.353 26.923 0.00 1.48 36.52 3.16
354 355 9.097257 ACATTTTTCAAAATCGATGAACTTGTT 57.903 25.926 0.00 0.00 36.52 2.83
355 356 9.919348 CATTTTTCAAAATCGATGAACTTGTTT 57.081 25.926 0.00 0.00 36.52 2.83
357 358 8.925161 TTTTCAAAATCGATGAACTTGTTTCT 57.075 26.923 0.00 0.00 36.57 2.52
363 364 8.880768 AAATCGATGAACTTGTTTCTAATTCG 57.119 30.769 0.00 0.00 34.97 3.34
364 365 7.596749 ATCGATGAACTTGTTTCTAATTCGT 57.403 32.000 0.00 0.00 34.97 3.85
365 366 6.817396 TCGATGAACTTGTTTCTAATTCGTG 58.183 36.000 0.00 0.00 34.97 4.35
366 367 6.643360 TCGATGAACTTGTTTCTAATTCGTGA 59.357 34.615 0.00 0.00 34.97 4.35
367 368 7.330946 TCGATGAACTTGTTTCTAATTCGTGAT 59.669 33.333 0.00 0.00 34.97 3.06
368 369 7.957484 CGATGAACTTGTTTCTAATTCGTGATT 59.043 33.333 0.00 0.00 34.97 2.57
369 370 9.612620 GATGAACTTGTTTCTAATTCGTGATTT 57.387 29.630 0.00 0.00 34.97 2.17
370 371 9.965824 ATGAACTTGTTTCTAATTCGTGATTTT 57.034 25.926 0.00 0.00 34.97 1.82
371 372 9.796120 TGAACTTGTTTCTAATTCGTGATTTTT 57.204 25.926 0.00 0.00 34.97 1.94
424 425 9.855361 CGTGATTTGTTTTAAATTATGTTTGCA 57.145 25.926 0.00 0.00 0.00 4.08
470 471 5.369685 TTTTCTGAAATGTATGCGCAAGA 57.630 34.783 17.11 7.20 43.02 3.02
471 472 5.369685 TTTCTGAAATGTATGCGCAAGAA 57.630 34.783 17.11 13.72 43.02 2.52
472 473 5.369685 TTCTGAAATGTATGCGCAAGAAA 57.630 34.783 17.11 0.00 43.02 2.52
473 474 4.722194 TCTGAAATGTATGCGCAAGAAAC 58.278 39.130 17.11 11.40 43.02 2.78
474 475 4.215185 TCTGAAATGTATGCGCAAGAAACA 59.785 37.500 17.11 17.00 43.02 2.83
475 476 4.475028 TGAAATGTATGCGCAAGAAACAG 58.525 39.130 17.11 0.00 43.02 3.16
476 477 2.549633 ATGTATGCGCAAGAAACAGC 57.450 45.000 17.11 0.00 43.02 4.40
482 483 4.030452 GCAAGAAACAGCGCGGCT 62.030 61.111 8.83 2.05 40.77 5.52
483 484 2.677003 GCAAGAAACAGCGCGGCTA 61.677 57.895 8.83 0.00 36.40 3.93
484 485 1.132640 CAAGAAACAGCGCGGCTAC 59.867 57.895 8.83 0.00 36.40 3.58
485 486 2.380410 AAGAAACAGCGCGGCTACG 61.380 57.895 8.83 0.00 36.40 3.51
486 487 3.110178 GAAACAGCGCGGCTACGT 61.110 61.111 8.83 0.00 43.45 3.57
487 488 2.663852 AAACAGCGCGGCTACGTT 60.664 55.556 8.83 4.46 43.45 3.99
488 489 2.166584 GAAACAGCGCGGCTACGTTT 62.167 55.000 8.83 12.52 43.45 3.60
489 490 1.778027 AAACAGCGCGGCTACGTTTT 61.778 50.000 8.83 0.00 43.45 2.43
490 491 0.945265 AACAGCGCGGCTACGTTTTA 60.945 50.000 8.83 0.00 43.45 1.52
491 492 0.945265 ACAGCGCGGCTACGTTTTAA 60.945 50.000 8.83 0.00 43.45 1.52
492 493 0.164217 CAGCGCGGCTACGTTTTAAA 59.836 50.000 8.83 0.00 43.45 1.52
493 494 0.164432 AGCGCGGCTACGTTTTAAAC 59.836 50.000 8.83 0.00 43.45 2.01
494 495 0.164432 GCGCGGCTACGTTTTAAACT 59.836 50.000 8.83 0.00 43.45 2.66
495 496 1.398832 GCGCGGCTACGTTTTAAACTT 60.399 47.619 8.83 0.00 43.45 2.66
496 497 2.489059 CGCGGCTACGTTTTAAACTTC 58.511 47.619 0.00 0.00 43.45 3.01
497 498 2.156310 CGCGGCTACGTTTTAAACTTCT 59.844 45.455 0.00 0.00 43.45 2.85
498 499 3.720051 CGCGGCTACGTTTTAAACTTCTC 60.720 47.826 0.00 0.00 43.45 2.87
499 500 3.720051 GCGGCTACGTTTTAAACTTCTCG 60.720 47.826 6.27 5.07 43.45 4.04
500 501 3.720051 CGGCTACGTTTTAAACTTCTCGC 60.720 47.826 6.27 1.48 34.81 5.03
501 502 3.393022 GCTACGTTTTAAACTTCTCGCG 58.607 45.455 0.00 0.00 0.00 5.87
502 503 2.289890 ACGTTTTAAACTTCTCGCGC 57.710 45.000 0.00 0.00 0.00 6.86
503 504 1.862827 ACGTTTTAAACTTCTCGCGCT 59.137 42.857 5.56 0.00 0.00 5.92
504 505 2.222624 CGTTTTAAACTTCTCGCGCTG 58.777 47.619 5.56 0.00 0.00 5.18
505 506 2.348218 CGTTTTAAACTTCTCGCGCTGT 60.348 45.455 5.56 0.00 0.00 4.40
506 507 2.941891 TTTAAACTTCTCGCGCTGTG 57.058 45.000 5.56 0.05 0.00 3.66
507 508 2.143008 TTAAACTTCTCGCGCTGTGA 57.857 45.000 5.56 2.75 0.00 3.58
508 509 1.415374 TAAACTTCTCGCGCTGTGAC 58.585 50.000 5.56 0.00 0.00 3.67
509 510 0.529773 AAACTTCTCGCGCTGTGACA 60.530 50.000 5.56 0.00 0.00 3.58
510 511 1.215655 AACTTCTCGCGCTGTGACAC 61.216 55.000 5.56 0.00 0.00 3.67
511 512 1.372251 CTTCTCGCGCTGTGACACT 60.372 57.895 5.56 0.00 0.00 3.55
512 513 1.612469 CTTCTCGCGCTGTGACACTG 61.612 60.000 5.56 7.65 0.00 3.66
513 514 2.050077 CTCGCGCTGTGACACTGA 60.050 61.111 15.90 1.66 0.00 3.41
514 515 2.354656 TCGCGCTGTGACACTGAC 60.355 61.111 15.90 6.31 0.00 3.51
515 516 2.355126 CGCGCTGTGACACTGACT 60.355 61.111 15.90 0.00 0.00 3.41
516 517 1.081442 CGCGCTGTGACACTGACTA 60.081 57.895 15.90 0.00 0.00 2.59
517 518 0.663269 CGCGCTGTGACACTGACTAA 60.663 55.000 15.90 0.00 0.00 2.24
518 519 1.497991 GCGCTGTGACACTGACTAAA 58.502 50.000 15.90 0.00 0.00 1.85
519 520 1.457303 GCGCTGTGACACTGACTAAAG 59.543 52.381 15.90 0.00 0.00 1.85
520 521 1.457303 CGCTGTGACACTGACTAAAGC 59.543 52.381 15.90 8.88 0.00 3.51
521 522 2.760374 GCTGTGACACTGACTAAAGCT 58.240 47.619 15.90 0.00 0.00 3.74
522 523 3.611766 CGCTGTGACACTGACTAAAGCTA 60.612 47.826 15.90 0.00 0.00 3.32
523 524 3.675698 GCTGTGACACTGACTAAAGCTAC 59.324 47.826 15.90 0.00 0.00 3.58
524 525 4.559704 GCTGTGACACTGACTAAAGCTACT 60.560 45.833 15.90 0.00 0.00 2.57
525 526 5.335740 GCTGTGACACTGACTAAAGCTACTA 60.336 44.000 15.90 0.00 0.00 1.82
526 527 6.255596 TGTGACACTGACTAAAGCTACTAG 57.744 41.667 7.20 0.00 0.00 2.57
527 528 5.183331 TGTGACACTGACTAAAGCTACTAGG 59.817 44.000 7.20 0.00 0.00 3.02
528 529 4.158025 TGACACTGACTAAAGCTACTAGGC 59.842 45.833 7.49 5.01 0.00 3.93
529 530 4.087182 ACACTGACTAAAGCTACTAGGCA 58.913 43.478 10.19 10.19 33.28 4.75
530 531 4.527038 ACACTGACTAAAGCTACTAGGCAA 59.473 41.667 11.45 0.00 33.96 4.52
531 532 5.187967 ACACTGACTAAAGCTACTAGGCAAT 59.812 40.000 11.45 0.56 33.96 3.56
532 533 5.751028 CACTGACTAAAGCTACTAGGCAATC 59.249 44.000 11.45 0.44 33.96 2.67
533 534 5.659079 ACTGACTAAAGCTACTAGGCAATCT 59.341 40.000 11.45 0.00 33.96 2.40
534 535 6.834451 ACTGACTAAAGCTACTAGGCAATCTA 59.166 38.462 11.45 0.00 33.96 1.98
535 536 7.507616 ACTGACTAAAGCTACTAGGCAATCTAT 59.492 37.037 11.45 0.00 33.96 1.98
536 537 7.887381 TGACTAAAGCTACTAGGCAATCTATC 58.113 38.462 8.53 0.00 31.24 2.08
537 538 7.505923 TGACTAAAGCTACTAGGCAATCTATCA 59.494 37.037 8.53 0.00 31.24 2.15
538 539 8.251383 ACTAAAGCTACTAGGCAATCTATCAA 57.749 34.615 7.49 0.00 34.17 2.57
539 540 8.705594 ACTAAAGCTACTAGGCAATCTATCAAA 58.294 33.333 7.49 0.00 34.17 2.69
540 541 9.547753 CTAAAGCTACTAGGCAATCTATCAAAA 57.452 33.333 0.00 0.00 34.17 2.44
541 542 8.807948 AAAGCTACTAGGCAATCTATCAAAAA 57.192 30.769 0.00 0.00 34.17 1.94
568 569 0.179108 CTACTAGGCAACGGGAGCAC 60.179 60.000 0.00 0.00 46.39 4.40
593 595 1.512156 TTGGGAGGTTTTTCGCGCTC 61.512 55.000 5.56 0.02 33.11 5.03
596 598 1.497722 GAGGTTTTTCGCGCTCCAG 59.502 57.895 5.56 0.00 0.00 3.86
600 602 1.062148 GGTTTTTCGCGCTCCAGATAC 59.938 52.381 5.56 0.00 0.00 2.24
612 614 2.202703 AGATACGCGCCGTGTTCC 60.203 61.111 9.22 1.02 41.39 3.62
670 672 3.195041 TCGTGAGGCAAACGAAGAG 57.805 52.632 11.55 0.00 46.30 2.85
671 673 0.387929 TCGTGAGGCAAACGAAGAGT 59.612 50.000 11.55 0.00 46.30 3.24
791 800 1.617755 CGCGCTACCATATTCCGCTG 61.618 60.000 5.56 0.00 42.21 5.18
830 845 1.154727 CGACGTACCGCAAAACTGC 60.155 57.895 0.00 0.00 0.00 4.40
831 846 1.823260 CGACGTACCGCAAAACTGCA 61.823 55.000 0.00 0.00 34.41 4.41
833 848 0.733729 ACGTACCGCAAAACTGCAAA 59.266 45.000 0.00 0.00 34.41 3.68
889 904 2.257974 TCGATTTGACGACGGAGAAG 57.742 50.000 0.00 0.00 37.37 2.85
893 908 0.320374 TTTGACGACGGAGAAGCCAT 59.680 50.000 0.00 0.00 35.94 4.40
972 1006 2.909965 GTGCCGTGCCTTGGGAAA 60.910 61.111 0.00 0.00 0.00 3.13
973 1007 2.123683 TGCCGTGCCTTGGGAAAA 60.124 55.556 0.00 0.00 0.00 2.29
1027 1061 1.134037 CCTCCGAGGTGAGCTACTAGT 60.134 57.143 6.24 0.00 0.00 2.57
1028 1062 2.215196 CTCCGAGGTGAGCTACTAGTC 58.785 57.143 0.00 0.00 0.00 2.59
1040 1079 7.308049 GGTGAGCTACTAGTCTTTTCTTTTTGG 60.308 40.741 0.00 0.00 0.00 3.28
1075 1118 2.875786 GAGCTTAGATGCACGCGCC 61.876 63.158 5.73 0.00 37.32 6.53
1185 1566 4.463186 TGTGAACTTCTTCTAGGCCTCTAC 59.537 45.833 9.68 0.00 0.00 2.59
1186 1567 4.024670 TGAACTTCTTCTAGGCCTCTACC 58.975 47.826 9.68 0.00 0.00 3.18
1187 1568 3.759815 ACTTCTTCTAGGCCTCTACCA 57.240 47.619 9.68 0.00 0.00 3.25
1188 1569 4.062490 ACTTCTTCTAGGCCTCTACCAA 57.938 45.455 9.68 0.00 0.00 3.67
1189 1570 4.027437 ACTTCTTCTAGGCCTCTACCAAG 58.973 47.826 9.68 10.35 0.00 3.61
1190 1571 3.033659 TCTTCTAGGCCTCTACCAAGG 57.966 52.381 9.68 0.00 39.62 3.61
1194 1575 2.250273 TCTAGGCCTCTACCAAGGGAAT 59.750 50.000 9.68 0.00 36.88 3.01
1195 1576 1.987080 AGGCCTCTACCAAGGGAATT 58.013 50.000 0.00 0.00 36.88 2.17
1196 1577 1.566231 AGGCCTCTACCAAGGGAATTG 59.434 52.381 0.00 0.00 36.88 2.32
1197 1578 1.285078 GGCCTCTACCAAGGGAATTGT 59.715 52.381 0.00 0.00 37.17 2.71
1198 1579 2.508300 GGCCTCTACCAAGGGAATTGTA 59.492 50.000 0.00 0.00 37.17 2.41
1199 1580 3.138468 GGCCTCTACCAAGGGAATTGTAT 59.862 47.826 0.00 0.00 37.17 2.29
1200 1581 4.390264 GCCTCTACCAAGGGAATTGTATC 58.610 47.826 0.00 0.00 37.17 2.24
1201 1582 4.141482 GCCTCTACCAAGGGAATTGTATCA 60.141 45.833 0.00 0.00 37.17 2.15
1202 1583 5.456763 GCCTCTACCAAGGGAATTGTATCAT 60.457 44.000 0.00 0.00 37.17 2.45
1203 1584 6.239887 GCCTCTACCAAGGGAATTGTATCATA 60.240 42.308 0.00 0.00 37.17 2.15
1204 1585 7.162082 CCTCTACCAAGGGAATTGTATCATAC 58.838 42.308 0.00 0.00 37.17 2.39
1205 1586 7.202093 CCTCTACCAAGGGAATTGTATCATACA 60.202 40.741 0.00 0.00 37.17 2.29
1206 1587 8.275187 TCTACCAAGGGAATTGTATCATACAT 57.725 34.615 0.00 0.00 38.68 2.29
1207 1588 8.375506 TCTACCAAGGGAATTGTATCATACATC 58.624 37.037 0.00 0.00 38.68 3.06
1208 1589 6.306987 ACCAAGGGAATTGTATCATACATCC 58.693 40.000 8.47 8.47 38.68 3.51
1209 1590 5.412594 CCAAGGGAATTGTATCATACATCCG 59.587 44.000 10.22 0.00 38.26 4.18
1210 1591 5.825593 AGGGAATTGTATCATACATCCGT 57.174 39.130 10.22 8.51 38.26 4.69
1211 1592 6.928348 AGGGAATTGTATCATACATCCGTA 57.072 37.500 9.88 0.00 38.26 4.02
1212 1593 7.496346 AGGGAATTGTATCATACATCCGTAT 57.504 36.000 9.88 0.00 38.26 3.06
1213 1594 7.918076 AGGGAATTGTATCATACATCCGTATT 58.082 34.615 9.88 2.04 38.26 1.89
1214 1595 8.383175 AGGGAATTGTATCATACATCCGTATTT 58.617 33.333 9.88 0.00 38.26 1.40
1215 1596 9.661563 GGGAATTGTATCATACATCCGTATTTA 57.338 33.333 10.22 0.00 38.26 1.40
1229 1610 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
1230 1611 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
1232 1613 9.932207 TCCGTATTTAGACAAATCTAAGACAAA 57.068 29.630 9.81 0.00 45.93 2.83
1241 1622 9.546428 AGACAAATCTAAGACAAAAATTTTGGG 57.454 29.630 20.79 5.88 31.46 4.12
1242 1623 9.541143 GACAAATCTAAGACAAAAATTTTGGGA 57.459 29.630 20.79 11.34 0.00 4.37
1245 1626 9.506018 AAATCTAAGACAAAAATTTTGGGATGG 57.494 29.630 20.79 9.24 0.00 3.51
1246 1627 7.847711 TCTAAGACAAAAATTTTGGGATGGA 57.152 32.000 20.79 11.07 0.00 3.41
1247 1628 7.895759 TCTAAGACAAAAATTTTGGGATGGAG 58.104 34.615 20.79 10.76 0.00 3.86
1248 1629 5.488262 AGACAAAAATTTTGGGATGGAGG 57.512 39.130 20.79 0.00 0.00 4.30
1250 1631 4.238669 ACAAAAATTTTGGGATGGAGGGA 58.761 39.130 20.79 0.00 0.00 4.20
1288 1669 7.251704 AGCGTTCCTTCATTTATATCAGTTG 57.748 36.000 0.00 0.00 0.00 3.16
1299 1680 8.611757 TCATTTATATCAGTTGATTTGGTCACG 58.388 33.333 0.00 0.00 36.32 4.35
1300 1681 6.918892 TTATATCAGTTGATTTGGTCACGG 57.081 37.500 0.00 0.00 36.32 4.94
1318 1699 2.101249 ACGGAAGTGTCGTCCAAAAGTA 59.899 45.455 3.11 0.00 46.97 2.24
1330 1711 4.559704 CGTCCAAAAGTAGAAGTGAGCTCT 60.560 45.833 16.19 0.00 0.00 4.09
1331 1712 5.335740 CGTCCAAAAGTAGAAGTGAGCTCTA 60.336 44.000 16.19 0.00 0.00 2.43
1360 1741 2.486548 CCGGGGTGAAGAAGAAACAAGA 60.487 50.000 0.00 0.00 0.00 3.02
1367 1748 5.817816 GGTGAAGAAGAAACAAGAGAACTCA 59.182 40.000 4.64 0.00 0.00 3.41
1368 1749 6.484977 GGTGAAGAAGAAACAAGAGAACTCAT 59.515 38.462 4.64 0.00 0.00 2.90
1388 1769 5.424757 TCATATAAACACTTGAAGACCGGG 58.575 41.667 6.32 0.00 0.00 5.73
1404 1785 0.037232 CGGGAACTGAACTGAGGGTC 60.037 60.000 0.00 0.00 36.31 4.46
1446 1827 1.165907 TTCAGGTTCAGCTTGGCACG 61.166 55.000 0.00 0.00 0.00 5.34
1447 1828 2.980233 AGGTTCAGCTTGGCACGC 60.980 61.111 8.05 8.05 0.00 5.34
1453 1834 2.672996 AGCTTGGCACGCCGATTT 60.673 55.556 12.80 0.00 39.42 2.17
1457 1838 2.257286 CTTGGCACGCCGATTTCTGG 62.257 60.000 3.13 0.00 39.42 3.86
1548 1947 2.614481 GGCCTCTGTTTTGACGTATCCA 60.614 50.000 0.00 0.00 0.00 3.41
1617 2019 0.401395 TTGGAGGGGGAACTGACAGT 60.401 55.000 1.07 1.07 0.00 3.55
1641 2043 3.570550 ACTATCAAGAGGTGCCTCGATAC 59.429 47.826 12.10 0.00 46.90 2.24
1644 2046 2.427453 TCAAGAGGTGCCTCGATACTTC 59.573 50.000 12.10 0.00 46.90 3.01
1645 2047 2.145397 AGAGGTGCCTCGATACTTCA 57.855 50.000 12.10 0.00 46.90 3.02
1650 2058 4.694339 AGGTGCCTCGATACTTCATTTAC 58.306 43.478 0.00 0.00 0.00 2.01
1651 2059 4.406003 AGGTGCCTCGATACTTCATTTACT 59.594 41.667 0.00 0.00 0.00 2.24
1655 2063 7.441458 GGTGCCTCGATACTTCATTTACTTATT 59.559 37.037 0.00 0.00 0.00 1.40
1807 2224 5.307196 GGTTATGTGCCCTCCTAAGATTCTA 59.693 44.000 0.00 0.00 0.00 2.10
1930 2347 6.458210 CAGATTTTGGCAAACTAACCATCTT 58.542 36.000 13.10 0.28 35.42 2.40
2030 2447 2.677524 TTGATGGGCAGCACAGGC 60.678 61.111 2.40 0.00 41.61 4.85
2121 2538 4.534168 CCTCATGCTATTTCATTGCTTCG 58.466 43.478 0.00 0.00 32.18 3.79
2170 2587 4.022329 ACAAATGGTTTCCTGAATTCGGTC 60.022 41.667 13.23 6.86 0.00 4.79
2189 2606 2.614983 GTCGGCTGTTTGTGACCTTTTA 59.385 45.455 0.00 0.00 0.00 1.52
2234 2651 4.143030 GCGTATGTCATCTGTAATGGATGC 60.143 45.833 0.00 0.00 40.02 3.91
2362 2791 5.599732 TGTTTCCTTCCACATGATTTGTTG 58.400 37.500 0.00 0.00 36.00 3.33
2386 2815 5.389859 TCCCATGTCAAACATTTTGCTAG 57.610 39.130 0.00 0.00 36.53 3.42
2391 2820 7.276218 CCCATGTCAAACATTTTGCTAGTTATG 59.724 37.037 0.00 0.00 36.53 1.90
2457 2894 1.477700 CAACATGCCATAACCCACCTG 59.522 52.381 0.00 0.00 0.00 4.00
2474 2911 3.798337 CACCTGTTGTTTCTGCAAATGAC 59.202 43.478 0.00 0.00 0.00 3.06
2733 3297 6.610075 AGGCTAAAATGGTTGTGATCATTT 57.390 33.333 0.00 0.00 43.05 2.32
2789 3353 5.360714 TGTATCCTTTTCCATCATCCAAAGC 59.639 40.000 0.00 0.00 0.00 3.51
2812 3376 4.110036 ACTTTTGGTTGCAACTCTGAAC 57.890 40.909 27.64 11.49 0.00 3.18
2823 3387 3.241530 TCTGAACGTGCCCTGCCT 61.242 61.111 0.00 0.00 0.00 4.75
2828 3392 0.318699 GAACGTGCCCTGCCTTTTTC 60.319 55.000 0.00 0.00 0.00 2.29
2833 3405 1.181098 TGCCCTGCCTTTTTCTCTGC 61.181 55.000 0.00 0.00 0.00 4.26
2939 3511 6.093771 GTCAAAACTCTAGATCGTCTACCTCA 59.906 42.308 0.00 0.00 0.00 3.86
2943 3515 6.092955 ACTCTAGATCGTCTACCTCACTAG 57.907 45.833 0.00 0.00 0.00 2.57
2978 3550 4.119136 ACATGCGTTTCCTTTTTCCTTTG 58.881 39.130 0.00 0.00 0.00 2.77
2990 3562 2.879002 TTCCTTTGTGCATCGCAAAA 57.121 40.000 6.93 0.00 42.10 2.44
3005 3577 6.582295 GCATCGCAAAAGAGTTTCAGATTAAA 59.418 34.615 0.00 0.00 0.00 1.52
3009 3581 7.011950 TCGCAAAAGAGTTTCAGATTAAACAGA 59.988 33.333 0.00 0.00 40.97 3.41
3043 3615 4.997395 GGCACATAATGGAATCACGACTAT 59.003 41.667 0.00 0.00 0.00 2.12
3044 3616 5.470098 GGCACATAATGGAATCACGACTATT 59.530 40.000 0.00 0.00 0.00 1.73
3076 3649 9.682465 AGGTTTATTAAAAGATTGTACTCCCTC 57.318 33.333 0.00 0.00 0.00 4.30
3077 3650 9.682465 GGTTTATTAAAAGATTGTACTCCCTCT 57.318 33.333 0.00 0.00 0.00 3.69
3130 3703 9.819267 AGCTAAAATAGTAATCTAAACGCTCTT 57.181 29.630 0.00 0.00 0.00 2.85
3144 3717 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
3145 3718 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
3146 3719 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
3147 3720 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
3148 3721 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
3149 3722 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
3150 3723 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
3151 3724 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
3152 3725 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
3153 3726 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
3154 3727 9.294614 CTTATATTAGTTTACGGAGGGAGTACT 57.705 37.037 0.00 0.00 0.00 2.73
3237 3810 4.051237 GACAAATGTTGCAGTCCCTTTTC 58.949 43.478 0.00 0.00 0.00 2.29
3244 3817 1.946768 TGCAGTCCCTTTTCTGTTTCG 59.053 47.619 0.00 0.00 34.57 3.46
3247 3820 3.304057 GCAGTCCCTTTTCTGTTTCGAAG 60.304 47.826 0.00 0.00 34.57 3.79
3252 3825 5.066117 GTCCCTTTTCTGTTTCGAAGTTTCT 59.934 40.000 0.00 0.00 0.00 2.52
3278 3853 3.502211 ACCTTGATAAAACAAGACGCCAG 59.498 43.478 9.55 0.00 46.85 4.85
3286 3861 0.753262 ACAAGACGCCAGAGAGTTGT 59.247 50.000 0.00 0.00 0.00 3.32
3287 3862 1.143305 CAAGACGCCAGAGAGTTGTG 58.857 55.000 0.00 0.00 0.00 3.33
3289 3864 1.115930 AGACGCCAGAGAGTTGTGGT 61.116 55.000 0.00 0.00 39.87 4.16
3290 3865 0.601558 GACGCCAGAGAGTTGTGGTA 59.398 55.000 0.00 0.00 39.87 3.25
3291 3866 1.204941 GACGCCAGAGAGTTGTGGTAT 59.795 52.381 0.00 0.00 39.87 2.73
3292 3867 1.066858 ACGCCAGAGAGTTGTGGTATG 60.067 52.381 0.00 0.00 39.87 2.39
3293 3868 1.066858 CGCCAGAGAGTTGTGGTATGT 60.067 52.381 0.00 0.00 39.87 2.29
3294 3869 2.165641 CGCCAGAGAGTTGTGGTATGTA 59.834 50.000 0.00 0.00 39.87 2.29
3295 3870 3.181475 CGCCAGAGAGTTGTGGTATGTAT 60.181 47.826 0.00 0.00 39.87 2.29
3296 3871 4.037565 CGCCAGAGAGTTGTGGTATGTATA 59.962 45.833 0.00 0.00 39.87 1.47
3297 3872 5.290386 GCCAGAGAGTTGTGGTATGTATAC 58.710 45.833 0.00 0.00 39.87 1.47
3298 3873 5.069251 GCCAGAGAGTTGTGGTATGTATACT 59.931 44.000 4.17 0.00 39.87 2.12
3364 3940 0.529555 AAAATGCGCGCACTGGTTTT 60.530 45.000 39.05 32.34 0.00 2.43
3489 4069 2.930562 GTGAGGAGGGTGGTGGCT 60.931 66.667 0.00 0.00 0.00 4.75
3506 4086 2.997315 TGGGGAGTCCAGCGTGAG 60.997 66.667 12.30 0.00 41.46 3.51
3586 4185 1.786937 TGGATCTCTCCAGCTTCCTC 58.213 55.000 0.34 0.00 46.95 3.71
3587 4186 1.047801 GGATCTCTCCAGCTTCCTCC 58.952 60.000 0.00 0.00 41.64 4.30
3588 4187 0.673437 GATCTCTCCAGCTTCCTCCG 59.327 60.000 0.00 0.00 0.00 4.63
3589 4188 0.758685 ATCTCTCCAGCTTCCTCCGG 60.759 60.000 0.00 0.00 0.00 5.14
3590 4189 1.684049 CTCTCCAGCTTCCTCCGGT 60.684 63.158 0.00 0.00 0.00 5.28
3591 4190 1.229209 TCTCCAGCTTCCTCCGGTT 60.229 57.895 0.00 0.00 0.00 4.44
3592 4191 1.078848 CTCCAGCTTCCTCCGGTTG 60.079 63.158 0.00 0.00 0.00 3.77
3593 4192 1.535444 TCCAGCTTCCTCCGGTTGA 60.535 57.895 0.00 0.00 0.00 3.18
3594 4193 1.376037 CCAGCTTCCTCCGGTTGAC 60.376 63.158 0.00 0.00 0.00 3.18
3621 4220 0.031857 TGCCACAAAGAAACATGCCG 59.968 50.000 0.00 0.00 0.00 5.69
3648 4250 5.001232 TCTTTGTGGAGCAACTGGTAATAC 58.999 41.667 0.00 0.00 36.72 1.89
3764 4367 4.602995 TGTTTGAATTGTAACCGAAGTGC 58.397 39.130 0.00 0.00 0.00 4.40
3774 4377 1.527034 ACCGAAGTGCGTACTCTACA 58.473 50.000 6.63 0.00 35.69 2.74
3775 4378 1.881973 ACCGAAGTGCGTACTCTACAA 59.118 47.619 6.63 0.00 35.69 2.41
3776 4379 2.294233 ACCGAAGTGCGTACTCTACAAA 59.706 45.455 6.63 0.00 35.69 2.83
3828 4431 5.338300 GGATTTATTTGGATGGTTGCCAACT 60.338 40.000 7.62 0.00 44.58 3.16
3877 4480 6.051717 CCATCTGATCAAAACTAGAACCGAT 58.948 40.000 0.00 0.00 0.00 4.18
3881 4484 3.695830 TCAAAACTAGAACCGATGGCT 57.304 42.857 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.766404 AAAGTAATCAAAACTGGCGAGG 57.234 40.909 0.00 0.00 0.00 4.63
1 2 5.048713 AGGAAAAGTAATCAAAACTGGCGAG 60.049 40.000 0.00 0.00 0.00 5.03
2 3 4.825085 AGGAAAAGTAATCAAAACTGGCGA 59.175 37.500 0.00 0.00 0.00 5.54
3 4 5.121221 AGGAAAAGTAATCAAAACTGGCG 57.879 39.130 0.00 0.00 0.00 5.69
4 5 6.280643 ACAAGGAAAAGTAATCAAAACTGGC 58.719 36.000 0.00 0.00 0.00 4.85
5 6 8.716646 AAACAAGGAAAAGTAATCAAAACTGG 57.283 30.769 0.00 0.00 0.00 4.00
106 107 8.887717 GCTCACAATCAAAAGAAGTACATCTAT 58.112 33.333 0.17 0.00 0.00 1.98
107 108 8.097038 AGCTCACAATCAAAAGAAGTACATCTA 58.903 33.333 0.17 0.00 0.00 1.98
108 109 6.939163 AGCTCACAATCAAAAGAAGTACATCT 59.061 34.615 0.00 0.00 0.00 2.90
109 110 7.138692 AGCTCACAATCAAAAGAAGTACATC 57.861 36.000 0.00 0.00 0.00 3.06
110 111 7.516198 AAGCTCACAATCAAAAGAAGTACAT 57.484 32.000 0.00 0.00 0.00 2.29
111 112 6.942532 AAGCTCACAATCAAAAGAAGTACA 57.057 33.333 0.00 0.00 0.00 2.90
112 113 8.634475 AAAAAGCTCACAATCAAAAGAAGTAC 57.366 30.769 0.00 0.00 0.00 2.73
166 167 9.940166 GCTTTCATTGATTTTCAAACAAAATCT 57.060 25.926 16.74 0.49 43.46 2.40
167 168 9.940166 AGCTTTCATTGATTTTCAAACAAAATC 57.060 25.926 11.31 11.31 40.12 2.17
171 172 9.771915 GAAAAGCTTTCATTGATTTTCAAACAA 57.228 25.926 13.10 0.00 44.34 2.83
180 181 9.774413 AGAAATTCTGAAAAGCTTTCATTGATT 57.226 25.926 13.10 7.99 0.00 2.57
224 225 9.581099 GTGTTCCTTGATTTTAGAAAAAGTTCA 57.419 29.630 0.00 0.00 36.09 3.18
225 226 9.803315 AGTGTTCCTTGATTTTAGAAAAAGTTC 57.197 29.630 0.00 0.00 0.00 3.01
238 239 9.810545 TCGATTTTTAAAAAGTGTTCCTTGATT 57.189 25.926 17.72 0.00 32.32 2.57
239 240 9.981114 ATCGATTTTTAAAAAGTGTTCCTTGAT 57.019 25.926 17.72 10.89 32.32 2.57
240 241 9.243637 CATCGATTTTTAAAAAGTGTTCCTTGA 57.756 29.630 17.72 9.31 32.32 3.02
241 242 9.243637 TCATCGATTTTTAAAAAGTGTTCCTTG 57.756 29.630 17.72 9.67 32.32 3.61
242 243 9.463443 CTCATCGATTTTTAAAAAGTGTTCCTT 57.537 29.630 17.72 0.00 33.79 3.36
243 244 8.630037 ACTCATCGATTTTTAAAAAGTGTTCCT 58.370 29.630 17.72 0.43 0.00 3.36
244 245 8.797266 ACTCATCGATTTTTAAAAAGTGTTCC 57.203 30.769 17.72 3.66 0.00 3.62
259 260 9.784531 ACAAATTGGAAGATATACTCATCGATT 57.215 29.630 0.00 0.00 0.00 3.34
260 261 9.212641 CACAAATTGGAAGATATACTCATCGAT 57.787 33.333 0.00 0.00 0.00 3.59
261 262 8.421002 TCACAAATTGGAAGATATACTCATCGA 58.579 33.333 0.00 0.00 0.00 3.59
262 263 8.593492 TCACAAATTGGAAGATATACTCATCG 57.407 34.615 0.00 0.00 0.00 3.84
298 299 9.447157 TCAATTTGGAGAAAAGTTTGTCAATTT 57.553 25.926 3.66 0.00 32.58 1.82
299 300 9.617523 ATCAATTTGGAGAAAAGTTTGTCAATT 57.382 25.926 3.66 0.18 32.58 2.32
300 301 9.048446 CATCAATTTGGAGAAAAGTTTGTCAAT 57.952 29.630 3.66 0.00 32.58 2.57
301 302 8.256605 TCATCAATTTGGAGAAAAGTTTGTCAA 58.743 29.630 3.66 0.00 32.58 3.18
302 303 7.780064 TCATCAATTTGGAGAAAAGTTTGTCA 58.220 30.769 3.66 0.00 32.58 3.58
303 304 8.542953 GTTCATCAATTTGGAGAAAAGTTTGTC 58.457 33.333 0.00 0.00 0.00 3.18
304 305 8.040132 TGTTCATCAATTTGGAGAAAAGTTTGT 58.960 29.630 0.00 0.00 0.00 2.83
305 306 8.422973 TGTTCATCAATTTGGAGAAAAGTTTG 57.577 30.769 0.00 0.00 0.00 2.93
306 307 9.617523 AATGTTCATCAATTTGGAGAAAAGTTT 57.382 25.926 0.00 0.00 0.00 2.66
307 308 9.617523 AAATGTTCATCAATTTGGAGAAAAGTT 57.382 25.926 0.00 0.34 0.00 2.66
308 309 9.617523 AAAATGTTCATCAATTTGGAGAAAAGT 57.382 25.926 0.00 0.00 29.27 2.66
311 312 9.610705 TGAAAAATGTTCATCAATTTGGAGAAA 57.389 25.926 0.00 0.00 30.65 2.52
312 313 9.610705 TTGAAAAATGTTCATCAATTTGGAGAA 57.389 25.926 0.00 0.00 30.65 2.87
313 314 9.610705 TTTGAAAAATGTTCATCAATTTGGAGA 57.389 25.926 0.00 0.00 30.65 3.71
321 322 9.473640 TCATCGATTTTGAAAAATGTTCATCAA 57.526 25.926 5.76 0.00 38.64 2.57
322 323 9.473640 TTCATCGATTTTGAAAAATGTTCATCA 57.526 25.926 5.76 0.00 38.64 3.07
323 324 9.731519 GTTCATCGATTTTGAAAAATGTTCATC 57.268 29.630 5.76 0.00 38.64 2.92
324 325 9.480053 AGTTCATCGATTTTGAAAAATGTTCAT 57.520 25.926 5.76 0.00 38.64 2.57
325 326 8.870160 AGTTCATCGATTTTGAAAAATGTTCA 57.130 26.923 5.76 0.00 38.64 3.18
326 327 9.571804 CAAGTTCATCGATTTTGAAAAATGTTC 57.428 29.630 5.76 0.00 38.64 3.18
327 328 9.097257 ACAAGTTCATCGATTTTGAAAAATGTT 57.903 25.926 5.76 0.00 38.64 2.71
328 329 8.647143 ACAAGTTCATCGATTTTGAAAAATGT 57.353 26.923 5.76 10.02 38.64 2.71
329 330 9.919348 AAACAAGTTCATCGATTTTGAAAAATG 57.081 25.926 5.76 9.57 38.64 2.32
331 332 9.364989 AGAAACAAGTTCATCGATTTTGAAAAA 57.635 25.926 12.84 0.00 38.86 1.94
332 333 8.925161 AGAAACAAGTTCATCGATTTTGAAAA 57.075 26.923 12.84 0.00 38.86 2.29
337 338 9.329913 CGAATTAGAAACAAGTTCATCGATTTT 57.670 29.630 0.00 0.00 38.86 1.82
338 339 8.504005 ACGAATTAGAAACAAGTTCATCGATTT 58.496 29.630 0.00 0.00 38.86 2.17
339 340 7.957484 CACGAATTAGAAACAAGTTCATCGATT 59.043 33.333 0.00 0.00 38.86 3.34
340 341 7.330946 TCACGAATTAGAAACAAGTTCATCGAT 59.669 33.333 0.00 0.00 38.86 3.59
341 342 6.643360 TCACGAATTAGAAACAAGTTCATCGA 59.357 34.615 0.00 0.00 38.86 3.59
342 343 6.817396 TCACGAATTAGAAACAAGTTCATCG 58.183 36.000 0.00 0.00 38.86 3.84
343 344 9.612620 AAATCACGAATTAGAAACAAGTTCATC 57.387 29.630 0.00 0.00 38.86 2.92
344 345 9.965824 AAAATCACGAATTAGAAACAAGTTCAT 57.034 25.926 0.00 0.00 38.86 2.57
345 346 9.796120 AAAAATCACGAATTAGAAACAAGTTCA 57.204 25.926 0.00 0.00 38.86 3.18
398 399 9.855361 TGCAAACATAATTTAAAACAAATCACG 57.145 25.926 0.00 0.00 0.00 4.35
447 448 5.767269 TCTTGCGCATACATTTCAGAAAAA 58.233 33.333 12.75 0.00 0.00 1.94
448 449 5.369685 TCTTGCGCATACATTTCAGAAAA 57.630 34.783 12.75 0.00 0.00 2.29
449 450 5.369685 TTCTTGCGCATACATTTCAGAAA 57.630 34.783 12.75 0.00 0.00 2.52
450 451 5.153513 GTTTCTTGCGCATACATTTCAGAA 58.846 37.500 12.75 12.09 0.00 3.02
451 452 4.215185 TGTTTCTTGCGCATACATTTCAGA 59.785 37.500 12.75 5.31 0.00 3.27
452 453 4.475028 TGTTTCTTGCGCATACATTTCAG 58.525 39.130 12.75 2.34 0.00 3.02
453 454 4.475028 CTGTTTCTTGCGCATACATTTCA 58.525 39.130 12.75 4.54 0.00 2.69
454 455 3.301642 GCTGTTTCTTGCGCATACATTTC 59.698 43.478 12.75 0.00 0.00 2.17
455 456 3.244976 GCTGTTTCTTGCGCATACATTT 58.755 40.909 12.75 0.00 0.00 2.32
456 457 2.728846 CGCTGTTTCTTGCGCATACATT 60.729 45.455 12.75 0.00 45.50 2.71
457 458 1.202065 CGCTGTTTCTTGCGCATACAT 60.202 47.619 12.75 0.00 45.50 2.29
458 459 0.165727 CGCTGTTTCTTGCGCATACA 59.834 50.000 12.75 12.59 45.50 2.29
459 460 2.916583 CGCTGTTTCTTGCGCATAC 58.083 52.632 12.75 8.23 45.50 2.39
465 466 2.677003 TAGCCGCGCTGTTTCTTGC 61.677 57.895 5.56 0.00 40.10 4.01
466 467 1.132640 GTAGCCGCGCTGTTTCTTG 59.867 57.895 5.56 0.00 40.10 3.02
467 468 2.380410 CGTAGCCGCGCTGTTTCTT 61.380 57.895 5.56 0.00 40.10 2.52
468 469 2.809601 CGTAGCCGCGCTGTTTCT 60.810 61.111 5.56 0.00 40.10 2.52
469 470 2.166584 AAACGTAGCCGCGCTGTTTC 62.167 55.000 5.56 0.00 40.10 2.78
470 471 1.778027 AAAACGTAGCCGCGCTGTTT 61.778 50.000 5.56 6.86 40.10 2.83
471 472 0.945265 TAAAACGTAGCCGCGCTGTT 60.945 50.000 5.56 0.00 40.10 3.16
472 473 0.945265 TTAAAACGTAGCCGCGCTGT 60.945 50.000 5.56 0.00 40.10 4.40
473 474 0.164217 TTTAAAACGTAGCCGCGCTG 59.836 50.000 5.56 0.00 40.10 5.18
474 475 0.164432 GTTTAAAACGTAGCCGCGCT 59.836 50.000 5.56 4.15 43.41 5.92
475 476 0.164432 AGTTTAAAACGTAGCCGCGC 59.836 50.000 0.00 0.00 37.70 6.86
476 477 2.156310 AGAAGTTTAAAACGTAGCCGCG 59.844 45.455 0.00 0.00 37.70 6.46
477 478 3.720051 CGAGAAGTTTAAAACGTAGCCGC 60.720 47.826 0.00 0.00 37.70 6.53
478 479 3.720051 GCGAGAAGTTTAAAACGTAGCCG 60.720 47.826 0.00 0.00 40.83 5.52
479 480 3.720051 CGCGAGAAGTTTAAAACGTAGCC 60.720 47.826 0.00 0.00 36.23 3.93
480 481 3.393022 CGCGAGAAGTTTAAAACGTAGC 58.607 45.455 0.00 0.00 36.23 3.58
481 482 3.120782 AGCGCGAGAAGTTTAAAACGTAG 59.879 43.478 12.10 0.00 36.23 3.51
482 483 3.052036 AGCGCGAGAAGTTTAAAACGTA 58.948 40.909 12.10 0.00 36.23 3.57
483 484 1.862827 AGCGCGAGAAGTTTAAAACGT 59.137 42.857 12.10 0.00 36.23 3.99
484 485 2.222624 CAGCGCGAGAAGTTTAAAACG 58.777 47.619 12.10 0.00 36.23 3.60
485 486 2.964768 CACAGCGCGAGAAGTTTAAAAC 59.035 45.455 12.10 0.00 0.00 2.43
486 487 2.867368 TCACAGCGCGAGAAGTTTAAAA 59.133 40.909 12.10 0.00 0.00 1.52
487 488 2.220133 GTCACAGCGCGAGAAGTTTAAA 59.780 45.455 12.10 0.00 0.00 1.52
488 489 1.790623 GTCACAGCGCGAGAAGTTTAA 59.209 47.619 12.10 0.00 0.00 1.52
489 490 1.269361 TGTCACAGCGCGAGAAGTTTA 60.269 47.619 12.10 0.00 0.00 2.01
490 491 0.529773 TGTCACAGCGCGAGAAGTTT 60.530 50.000 12.10 0.00 0.00 2.66
491 492 1.067416 TGTCACAGCGCGAGAAGTT 59.933 52.632 12.10 0.00 0.00 2.66
492 493 1.661821 GTGTCACAGCGCGAGAAGT 60.662 57.895 12.10 0.00 0.00 3.01
493 494 1.372251 AGTGTCACAGCGCGAGAAG 60.372 57.895 12.10 0.00 0.00 2.85
494 495 1.661509 CAGTGTCACAGCGCGAGAA 60.662 57.895 12.10 0.00 0.00 2.87
495 496 2.050077 CAGTGTCACAGCGCGAGA 60.050 61.111 12.10 0.00 0.00 4.04
496 497 2.050077 TCAGTGTCACAGCGCGAG 60.050 61.111 12.10 3.23 0.00 5.03
497 498 1.512156 TAGTCAGTGTCACAGCGCGA 61.512 55.000 12.10 0.00 0.00 5.87
498 499 0.663269 TTAGTCAGTGTCACAGCGCG 60.663 55.000 0.00 0.00 0.00 6.86
499 500 1.457303 CTTTAGTCAGTGTCACAGCGC 59.543 52.381 0.00 0.00 0.00 5.92
500 501 1.457303 GCTTTAGTCAGTGTCACAGCG 59.543 52.381 5.62 0.00 0.00 5.18
501 502 2.760374 AGCTTTAGTCAGTGTCACAGC 58.240 47.619 5.62 3.49 0.00 4.40
502 503 5.127693 AGTAGCTTTAGTCAGTGTCACAG 57.872 43.478 5.62 0.00 0.00 3.66
503 504 5.183331 CCTAGTAGCTTTAGTCAGTGTCACA 59.817 44.000 5.62 0.00 0.00 3.58
504 505 5.642686 CCTAGTAGCTTTAGTCAGTGTCAC 58.357 45.833 0.00 0.00 0.00 3.67
505 506 4.158025 GCCTAGTAGCTTTAGTCAGTGTCA 59.842 45.833 0.00 0.00 0.00 3.58
506 507 4.158025 TGCCTAGTAGCTTTAGTCAGTGTC 59.842 45.833 0.00 0.00 0.00 3.67
507 508 4.087182 TGCCTAGTAGCTTTAGTCAGTGT 58.913 43.478 0.00 0.00 0.00 3.55
508 509 4.720649 TGCCTAGTAGCTTTAGTCAGTG 57.279 45.455 0.00 0.00 0.00 3.66
509 510 5.659079 AGATTGCCTAGTAGCTTTAGTCAGT 59.341 40.000 0.00 0.00 0.00 3.41
510 511 6.155475 AGATTGCCTAGTAGCTTTAGTCAG 57.845 41.667 0.00 0.00 0.00 3.51
511 512 7.505923 TGATAGATTGCCTAGTAGCTTTAGTCA 59.494 37.037 0.00 0.00 0.00 3.41
512 513 7.887381 TGATAGATTGCCTAGTAGCTTTAGTC 58.113 38.462 0.00 0.00 0.00 2.59
513 514 7.841282 TGATAGATTGCCTAGTAGCTTTAGT 57.159 36.000 0.00 0.00 0.00 2.24
514 515 9.547753 TTTTGATAGATTGCCTAGTAGCTTTAG 57.452 33.333 0.00 0.00 0.00 1.85
515 516 9.899661 TTTTTGATAGATTGCCTAGTAGCTTTA 57.100 29.630 0.00 0.00 0.00 1.85
516 517 8.807948 TTTTTGATAGATTGCCTAGTAGCTTT 57.192 30.769 0.00 0.00 0.00 3.51
543 544 2.039348 TCCCGTTGCCTAGTAGCTTTTT 59.961 45.455 0.00 0.00 0.00 1.94
544 545 1.626825 TCCCGTTGCCTAGTAGCTTTT 59.373 47.619 0.00 0.00 0.00 2.27
545 546 1.207329 CTCCCGTTGCCTAGTAGCTTT 59.793 52.381 0.00 0.00 0.00 3.51
546 547 0.824759 CTCCCGTTGCCTAGTAGCTT 59.175 55.000 0.00 0.00 0.00 3.74
547 548 1.677637 GCTCCCGTTGCCTAGTAGCT 61.678 60.000 0.00 0.00 0.00 3.32
548 549 1.227292 GCTCCCGTTGCCTAGTAGC 60.227 63.158 0.00 0.00 0.00 3.58
549 550 0.179108 GTGCTCCCGTTGCCTAGTAG 60.179 60.000 0.00 0.00 0.00 2.57
550 551 0.901114 TGTGCTCCCGTTGCCTAGTA 60.901 55.000 0.00 0.00 0.00 1.82
551 552 1.553690 ATGTGCTCCCGTTGCCTAGT 61.554 55.000 0.00 0.00 0.00 2.57
552 553 0.392998 AATGTGCTCCCGTTGCCTAG 60.393 55.000 0.00 0.00 0.00 3.02
553 554 0.037590 AAATGTGCTCCCGTTGCCTA 59.962 50.000 0.00 0.00 0.00 3.93
576 578 2.687805 GGAGCGCGAAAAACCTCCC 61.688 63.158 12.10 0.00 38.31 4.30
578 580 0.949105 TCTGGAGCGCGAAAAACCTC 60.949 55.000 12.10 5.30 0.00 3.85
593 595 2.508439 AACACGGCGCGTATCTGG 60.508 61.111 6.90 0.00 38.32 3.86
596 598 2.202703 AGGAACACGGCGCGTATC 60.203 61.111 6.90 4.29 38.32 2.24
652 654 0.387929 ACTCTTCGTTTGCCTCACGA 59.612 50.000 0.00 0.00 44.75 4.35
654 656 1.865865 TCACTCTTCGTTTGCCTCAC 58.134 50.000 0.00 0.00 0.00 3.51
692 697 2.281762 CGTAAAGCAGCAGGATACGTTC 59.718 50.000 0.00 0.00 46.39 3.95
730 735 7.552330 CCTGAACCTTTTTCCTTTTTGATTGAA 59.448 33.333 0.00 0.00 0.00 2.69
826 841 2.282462 CCGGCCTCCTTTTGCAGT 60.282 61.111 0.00 0.00 0.00 4.40
827 842 2.034066 TCCGGCCTCCTTTTGCAG 59.966 61.111 0.00 0.00 0.00 4.41
828 843 2.034066 CTCCGGCCTCCTTTTGCA 59.966 61.111 0.00 0.00 0.00 4.08
830 845 0.881796 GTTTCTCCGGCCTCCTTTTG 59.118 55.000 0.00 0.00 0.00 2.44
831 846 0.476771 TGTTTCTCCGGCCTCCTTTT 59.523 50.000 0.00 0.00 0.00 2.27
833 848 0.698818 ATTGTTTCTCCGGCCTCCTT 59.301 50.000 0.00 0.00 0.00 3.36
889 904 3.199891 GGACGCGTTGGGTATGGC 61.200 66.667 15.53 0.00 0.00 4.40
893 908 2.283388 AGAGGGACGCGTTGGGTA 60.283 61.111 15.53 0.00 0.00 3.69
961 995 0.831711 GGCTCCTTTTTCCCAAGGCA 60.832 55.000 0.00 0.00 42.97 4.75
965 999 0.887387 CGTCGGCTCCTTTTTCCCAA 60.887 55.000 0.00 0.00 0.00 4.12
966 1000 1.302192 CGTCGGCTCCTTTTTCCCA 60.302 57.895 0.00 0.00 0.00 4.37
1027 1061 0.391228 GCCCCGCCAAAAAGAAAAGA 59.609 50.000 0.00 0.00 0.00 2.52
1028 1062 2.912986 GCCCCGCCAAAAAGAAAAG 58.087 52.632 0.00 0.00 0.00 2.27
1075 1118 4.269603 CGAATCATGAAAGTGGAGCTACAG 59.730 45.833 0.00 0.00 0.00 2.74
1139 1478 9.696917 CACAGTTCAAAGCCTAGAAATTAAATT 57.303 29.630 0.00 0.00 0.00 1.82
1140 1479 9.077885 TCACAGTTCAAAGCCTAGAAATTAAAT 57.922 29.630 0.00 0.00 0.00 1.40
1141 1480 8.458573 TCACAGTTCAAAGCCTAGAAATTAAA 57.541 30.769 0.00 0.00 0.00 1.52
1142 1481 8.349983 GTTCACAGTTCAAAGCCTAGAAATTAA 58.650 33.333 0.00 0.00 0.00 1.40
1143 1482 7.719633 AGTTCACAGTTCAAAGCCTAGAAATTA 59.280 33.333 0.00 0.00 0.00 1.40
1144 1483 6.547510 AGTTCACAGTTCAAAGCCTAGAAATT 59.452 34.615 0.00 0.00 0.00 1.82
1151 1490 3.891049 AGAAGTTCACAGTTCAAAGCCT 58.109 40.909 5.50 0.00 35.06 4.58
1185 1566 5.412594 CGGATGTATGATACAATTCCCTTGG 59.587 44.000 15.88 2.93 42.76 3.61
1186 1567 5.997746 ACGGATGTATGATACAATTCCCTTG 59.002 40.000 15.88 7.82 42.76 3.61
1187 1568 6.187727 ACGGATGTATGATACAATTCCCTT 57.812 37.500 15.88 4.65 42.76 3.95
1188 1569 5.825593 ACGGATGTATGATACAATTCCCT 57.174 39.130 15.88 5.63 42.76 4.20
1189 1570 8.561738 AAATACGGATGTATGATACAATTCCC 57.438 34.615 15.88 11.09 40.42 3.97
1203 1584 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
1204 1585 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
1206 1587 9.932207 TTTGTCTTAGATTTGTCTAAATACGGA 57.068 29.630 0.26 0.00 36.66 4.69
1215 1596 9.546428 CCCAAAATTTTTGTCTTAGATTTGTCT 57.454 29.630 18.05 0.00 0.00 3.41
1216 1597 9.541143 TCCCAAAATTTTTGTCTTAGATTTGTC 57.459 29.630 18.05 0.00 0.00 3.18
1219 1600 9.506018 CCATCCCAAAATTTTTGTCTTAGATTT 57.494 29.630 18.05 0.00 0.00 2.17
1220 1601 8.879227 TCCATCCCAAAATTTTTGTCTTAGATT 58.121 29.630 18.05 0.00 0.00 2.40
1221 1602 8.434589 TCCATCCCAAAATTTTTGTCTTAGAT 57.565 30.769 18.05 10.28 0.00 1.98
1222 1603 7.039082 CCTCCATCCCAAAATTTTTGTCTTAGA 60.039 37.037 18.05 9.75 0.00 2.10
1223 1604 7.099120 CCTCCATCCCAAAATTTTTGTCTTAG 58.901 38.462 18.05 9.07 0.00 2.18
1224 1605 6.013812 CCCTCCATCCCAAAATTTTTGTCTTA 60.014 38.462 18.05 3.92 0.00 2.10
1225 1606 5.221904 CCCTCCATCCCAAAATTTTTGTCTT 60.222 40.000 18.05 2.53 0.00 3.01
1226 1607 4.286808 CCCTCCATCCCAAAATTTTTGTCT 59.713 41.667 18.05 2.68 0.00 3.41
1227 1608 4.285775 TCCCTCCATCCCAAAATTTTTGTC 59.714 41.667 18.05 0.00 0.00 3.18
1228 1609 4.238669 TCCCTCCATCCCAAAATTTTTGT 58.761 39.130 18.05 0.31 0.00 2.83
1229 1610 4.286808 ACTCCCTCCATCCCAAAATTTTTG 59.713 41.667 13.76 13.76 0.00 2.44
1230 1611 4.502415 ACTCCCTCCATCCCAAAATTTTT 58.498 39.130 0.00 0.00 0.00 1.94
1231 1612 4.146245 ACTCCCTCCATCCCAAAATTTT 57.854 40.909 0.00 0.00 0.00 1.82
1232 1613 3.852858 ACTCCCTCCATCCCAAAATTT 57.147 42.857 0.00 0.00 0.00 1.82
1233 1614 3.858638 AGTACTCCCTCCATCCCAAAATT 59.141 43.478 0.00 0.00 0.00 1.82
1234 1615 3.474920 AGTACTCCCTCCATCCCAAAAT 58.525 45.455 0.00 0.00 0.00 1.82
1235 1616 2.929301 AGTACTCCCTCCATCCCAAAA 58.071 47.619 0.00 0.00 0.00 2.44
1236 1617 2.661176 AGTACTCCCTCCATCCCAAA 57.339 50.000 0.00 0.00 0.00 3.28
1237 1618 2.661176 AAGTACTCCCTCCATCCCAA 57.339 50.000 0.00 0.00 0.00 4.12
1238 1619 2.661176 AAAGTACTCCCTCCATCCCA 57.339 50.000 0.00 0.00 0.00 4.37
1262 1643 8.826710 CAACTGATATAAATGAAGGAACGCTAA 58.173 33.333 0.00 0.00 0.00 3.09
1274 1655 7.857389 CCGTGACCAAATCAACTGATATAAATG 59.143 37.037 0.00 0.00 39.72 2.32
1278 1659 6.228616 TCCGTGACCAAATCAACTGATATA 57.771 37.500 0.00 0.00 39.72 0.86
1279 1660 5.097742 TCCGTGACCAAATCAACTGATAT 57.902 39.130 0.00 0.00 39.72 1.63
1280 1661 4.545208 TCCGTGACCAAATCAACTGATA 57.455 40.909 0.00 0.00 39.72 2.15
1288 1669 1.459592 CGACACTTCCGTGACCAAATC 59.540 52.381 0.00 0.00 43.97 2.17
1299 1680 3.986277 TCTACTTTTGGACGACACTTCC 58.014 45.455 0.00 0.00 0.00 3.46
1300 1681 5.048507 ACTTCTACTTTTGGACGACACTTC 58.951 41.667 0.00 0.00 0.00 3.01
1318 1699 5.242838 CCGGAAGAATATAGAGCTCACTTCT 59.757 44.000 17.77 14.09 34.61 2.85
1360 1741 7.545965 CGGTCTTCAAGTGTTTATATGAGTTCT 59.454 37.037 0.00 0.00 0.00 3.01
1367 1748 5.687166 TCCCGGTCTTCAAGTGTTTATAT 57.313 39.130 0.00 0.00 0.00 0.86
1368 1749 5.012354 AGTTCCCGGTCTTCAAGTGTTTATA 59.988 40.000 0.00 0.00 0.00 0.98
1388 1769 4.875561 AGTAAGACCCTCAGTTCAGTTC 57.124 45.455 0.00 0.00 0.00 3.01
1404 1785 6.991485 AATTTGCATGACGAACAAAGTAAG 57.009 33.333 0.00 0.00 36.78 2.34
1447 1828 0.181114 TCTCCCATGCCAGAAATCGG 59.819 55.000 0.00 0.00 0.00 4.18
1453 1834 1.689243 CGTCCATCTCCCATGCCAGA 61.689 60.000 0.00 0.00 0.00 3.86
1457 1838 2.111878 CCCGTCCATCTCCCATGC 59.888 66.667 0.00 0.00 0.00 4.06
1617 2019 1.751351 CGAGGCACCTCTTGATAGTCA 59.249 52.381 14.58 0.00 40.69 3.41
1644 2046 9.651913 AGGTGCATGGTTTAAAATAAGTAAATG 57.348 29.630 0.00 0.00 0.00 2.32
1650 2058 9.651913 ACATAAAGGTGCATGGTTTAAAATAAG 57.348 29.630 0.00 0.00 0.00 1.73
1655 2063 9.429359 CAAATACATAAAGGTGCATGGTTTAAA 57.571 29.630 0.00 0.00 0.00 1.52
1689 2106 4.333926 GCAACAACAAAAGTGCCCAATAAA 59.666 37.500 0.00 0.00 0.00 1.40
1698 2115 1.325338 GCAGCTGCAACAACAAAAGTG 59.675 47.619 33.36 0.00 41.59 3.16
1807 2224 2.203938 TTCCTCGTGCCCTCCCTT 60.204 61.111 0.00 0.00 0.00 3.95
1915 2332 7.816640 TGTAGATTTGAAGATGGTTAGTTTGC 58.183 34.615 0.00 0.00 0.00 3.68
1930 2347 4.517285 GCAACCTGGAGATGTAGATTTGA 58.483 43.478 0.00 0.00 0.00 2.69
2030 2447 3.129988 GCAAATCTCCCTTTCATCACCAG 59.870 47.826 0.00 0.00 0.00 4.00
2121 2538 1.111277 AAGGGCACACTTCAAACACC 58.889 50.000 0.00 0.00 0.00 4.16
2170 2587 2.356382 TGTAAAAGGTCACAAACAGCCG 59.644 45.455 0.00 0.00 0.00 5.52
2189 2606 5.920273 CGCATCTGAAAGGTTTACAAAATGT 59.080 36.000 0.00 0.00 0.00 2.71
2225 2642 1.217436 TCATGGCCCTTGCATCCATTA 59.783 47.619 0.00 0.00 38.46 1.90
2234 2651 3.795688 ATAGTGGTATCATGGCCCTTG 57.204 47.619 0.00 0.00 0.00 3.61
2362 2791 4.824289 AGCAAAATGTTTGACATGGGATC 58.176 39.130 4.93 0.00 37.97 3.36
2386 2815 8.064336 ACGGAGGAACTATATATGGTCATAAC 57.936 38.462 1.78 0.00 41.55 1.89
2391 2820 6.837471 AGAACGGAGGAACTATATATGGTC 57.163 41.667 1.78 0.00 41.55 4.02
2457 2894 3.952535 AGTCGTCATTTGCAGAAACAAC 58.047 40.909 0.00 0.00 0.00 3.32
2812 3376 0.890996 AGAGAAAAAGGCAGGGCACG 60.891 55.000 0.00 0.00 0.00 5.34
2823 3387 2.092429 AGACCCACACTGCAGAGAAAAA 60.092 45.455 23.35 0.00 0.00 1.94
2828 3392 0.394192 TGAAGACCCACACTGCAGAG 59.606 55.000 23.35 16.23 0.00 3.35
2833 3405 1.543429 GGACCTTGAAGACCCACACTG 60.543 57.143 0.00 0.00 0.00 3.66
2978 3550 2.975851 CTGAAACTCTTTTGCGATGCAC 59.024 45.455 0.00 0.00 38.71 4.57
2990 3562 6.426328 CACAGCTCTGTTTAATCTGAAACTCT 59.574 38.462 0.00 0.00 42.83 3.24
3104 3677 9.819267 AAGAGCGTTTAGATTACTATTTTAGCT 57.181 29.630 0.00 0.00 0.00 3.32
3118 3691 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
3119 3692 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
3120 3693 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
3121 3694 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
3122 3695 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
3123 3696 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
3124 3697 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
3125 3698 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
3126 3699 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3127 3700 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
3128 3701 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
3135 3708 9.896645 CATATATAGTACTCCCTCCGTAAACTA 57.103 37.037 0.00 0.00 0.00 2.24
3136 3709 8.389366 ACATATATAGTACTCCCTCCGTAAACT 58.611 37.037 0.00 0.00 0.00 2.66
3137 3710 8.457261 CACATATATAGTACTCCCTCCGTAAAC 58.543 40.741 0.00 0.00 0.00 2.01
3138 3711 8.385491 TCACATATATAGTACTCCCTCCGTAAA 58.615 37.037 0.00 0.00 0.00 2.01
3139 3712 7.921304 TCACATATATAGTACTCCCTCCGTAA 58.079 38.462 0.00 0.00 0.00 3.18
3140 3713 7.365384 CCTCACATATATAGTACTCCCTCCGTA 60.365 44.444 0.00 0.00 0.00 4.02
3141 3714 6.384342 TCACATATATAGTACTCCCTCCGT 57.616 41.667 0.00 0.00 0.00 4.69
3142 3715 5.823570 CCTCACATATATAGTACTCCCTCCG 59.176 48.000 0.00 0.00 0.00 4.63
3143 3716 6.603997 CACCTCACATATATAGTACTCCCTCC 59.396 46.154 0.00 0.00 0.00 4.30
3144 3717 7.403671 TCACCTCACATATATAGTACTCCCTC 58.596 42.308 0.00 0.00 0.00 4.30
3145 3718 7.344599 TCACCTCACATATATAGTACTCCCT 57.655 40.000 0.00 0.00 0.00 4.20
3146 3719 6.095720 GCTCACCTCACATATATAGTACTCCC 59.904 46.154 0.00 0.00 0.00 4.30
3147 3720 6.659668 TGCTCACCTCACATATATAGTACTCC 59.340 42.308 0.00 0.00 0.00 3.85
3148 3721 7.689446 TGCTCACCTCACATATATAGTACTC 57.311 40.000 0.00 0.00 0.00 2.59
3149 3722 7.671819 ACATGCTCACCTCACATATATAGTACT 59.328 37.037 0.00 0.00 0.00 2.73
3150 3723 7.831753 ACATGCTCACCTCACATATATAGTAC 58.168 38.462 0.00 0.00 0.00 2.73
3151 3724 7.669722 TGACATGCTCACCTCACATATATAGTA 59.330 37.037 0.00 0.00 0.00 1.82
3152 3725 6.494835 TGACATGCTCACCTCACATATATAGT 59.505 38.462 0.00 0.00 0.00 2.12
3153 3726 6.928520 TGACATGCTCACCTCACATATATAG 58.071 40.000 0.00 0.00 0.00 1.31
3154 3727 6.916360 TGACATGCTCACCTCACATATATA 57.084 37.500 0.00 0.00 0.00 0.86
3155 3728 5.813513 TGACATGCTCACCTCACATATAT 57.186 39.130 0.00 0.00 0.00 0.86
3156 3729 5.511888 CCATGACATGCTCACCTCACATATA 60.512 44.000 10.10 0.00 0.00 0.86
3157 3730 4.386711 CATGACATGCTCACCTCACATAT 58.613 43.478 1.71 0.00 0.00 1.78
3158 3731 3.432608 CCATGACATGCTCACCTCACATA 60.433 47.826 10.10 0.00 0.00 2.29
3209 3782 5.304101 AGGGACTGCAACATTTGTCATTTTA 59.696 36.000 4.20 0.00 37.18 1.52
3219 3792 3.299503 ACAGAAAAGGGACTGCAACATT 58.700 40.909 0.00 0.00 40.86 2.71
3237 3810 8.306680 TCAAGGTAATAGAAACTTCGAAACAG 57.693 34.615 0.00 0.00 0.00 3.16
3252 3825 6.879993 TGGCGTCTTGTTTTATCAAGGTAATA 59.120 34.615 6.60 0.00 43.25 0.98
3286 3861 9.017509 GCCTGTACTATACAAGTATACATACCA 57.982 37.037 5.50 0.00 42.63 3.25
3287 3862 8.465201 GGCCTGTACTATACAAGTATACATACC 58.535 40.741 5.50 6.18 42.63 2.73
3289 3864 7.884877 ACGGCCTGTACTATACAAGTATACATA 59.115 37.037 5.50 0.00 42.63 2.29
3290 3865 6.718454 ACGGCCTGTACTATACAAGTATACAT 59.282 38.462 5.50 0.00 42.63 2.29
3291 3866 6.016860 CACGGCCTGTACTATACAAGTATACA 60.017 42.308 5.50 0.00 42.63 2.29
3292 3867 6.376978 CACGGCCTGTACTATACAAGTATAC 58.623 44.000 0.00 0.00 42.63 1.47
3293 3868 5.048504 GCACGGCCTGTACTATACAAGTATA 60.049 44.000 0.00 0.49 42.63 1.47
3294 3869 4.261909 GCACGGCCTGTACTATACAAGTAT 60.262 45.833 0.00 0.00 42.63 2.12
3295 3870 3.067180 GCACGGCCTGTACTATACAAGTA 59.933 47.826 0.00 0.00 39.80 2.24
3296 3871 2.159142 GCACGGCCTGTACTATACAAGT 60.159 50.000 0.00 0.00 42.62 3.16
3297 3872 2.159156 TGCACGGCCTGTACTATACAAG 60.159 50.000 0.00 0.00 38.38 3.16
3298 3873 1.826096 TGCACGGCCTGTACTATACAA 59.174 47.619 0.00 0.00 38.38 2.41
3348 3924 2.050168 CAAAACCAGTGCGCGCAT 60.050 55.556 38.62 22.74 0.00 4.73
3364 3940 0.764890 AGCTAAGTTCAGTGCACCCA 59.235 50.000 14.63 0.00 0.00 4.51
3404 3980 0.035056 ATGAACCGAAGCCCTCAAGG 60.035 55.000 0.00 0.00 39.47 3.61
3417 3997 2.040544 CGCCACACCTCCATGAACC 61.041 63.158 0.00 0.00 0.00 3.62
3489 4069 2.997315 CTCACGCTGGACTCCCCA 60.997 66.667 0.00 0.00 44.25 4.96
3548 4128 3.142393 CCGATCTTCCGGCCTGAT 58.858 61.111 0.00 0.00 43.25 2.90
3584 4183 1.502231 CACAAGACTGTCAACCGGAG 58.498 55.000 9.46 0.00 31.64 4.63
3585 4184 0.531974 GCACAAGACTGTCAACCGGA 60.532 55.000 9.46 0.00 31.64 5.14
3586 4185 1.507141 GGCACAAGACTGTCAACCGG 61.507 60.000 10.88 0.00 31.64 5.28
3587 4186 0.813610 TGGCACAAGACTGTCAACCG 60.814 55.000 10.88 0.00 31.64 4.44
3588 4187 0.663153 GTGGCACAAGACTGTCAACC 59.337 55.000 13.86 4.36 44.16 3.77
3589 4188 1.378531 TGTGGCACAAGACTGTCAAC 58.621 50.000 19.74 0.00 44.16 3.18
3590 4189 2.121291 TTGTGGCACAAGACTGTCAA 57.879 45.000 28.09 3.70 44.16 3.18
3591 4190 2.016318 CTTTGTGGCACAAGACTGTCA 58.984 47.619 29.58 14.63 44.16 3.58
3592 4191 2.288666 TCTTTGTGGCACAAGACTGTC 58.711 47.619 29.58 0.00 44.16 3.51
3593 4192 2.418368 TCTTTGTGGCACAAGACTGT 57.582 45.000 29.58 0.00 44.16 3.55
3594 4193 3.119531 TGTTTCTTTGTGGCACAAGACTG 60.120 43.478 29.58 20.79 44.16 3.51
3621 4220 2.291741 CCAGTTGCTCCACAAAGAAGTC 59.708 50.000 0.00 0.00 40.82 3.01
3648 4250 2.480419 GGTCTGATTAATCGCAATCCCG 59.520 50.000 10.80 0.00 34.59 5.14
3828 4431 2.098614 AGTGTGTTGTCATGCCAAACA 58.901 42.857 0.00 0.00 0.00 2.83
3839 4442 4.085357 TCAGATGGCTAAAGTGTGTTGT 57.915 40.909 0.00 0.00 0.00 3.32
3877 4480 4.124351 CGACCGCCTTCGTAGCCA 62.124 66.667 0.00 0.00 34.16 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.