Multiple sequence alignment - TraesCS2B01G120200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G120200 chr2B 100.000 5725 0 0 973 6697 87848268 87842544 0.000000e+00 10573.0
1 TraesCS2B01G120200 chr2B 100.000 671 0 0 1 671 87849240 87848570 0.000000e+00 1240.0
2 TraesCS2B01G120200 chr2B 92.222 90 7 0 2325 2414 354879124 354879213 1.960000e-25 128.0
3 TraesCS2B01G120200 chr2B 91.379 58 3 2 2408 2464 87846608 87846552 2.000000e-10 78.7
4 TraesCS2B01G120200 chr2B 91.379 58 3 2 2633 2689 87846833 87846777 2.000000e-10 78.7
5 TraesCS2B01G120200 chr2D 95.890 2336 62 13 4060 6385 39828239 39830550 0.000000e+00 3751.0
6 TraesCS2B01G120200 chr2D 92.783 2106 89 31 4060 6141 55371471 55369405 0.000000e+00 2988.0
7 TraesCS2B01G120200 chr2D 90.349 1233 65 24 1133 2327 39819594 39820810 0.000000e+00 1568.0
8 TraesCS2B01G120200 chr2D 90.302 1227 73 19 1131 2327 55374790 55373580 0.000000e+00 1565.0
9 TraesCS2B01G120200 chr2D 95.946 814 29 2 3044 3857 39827428 39828237 0.000000e+00 1317.0
10 TraesCS2B01G120200 chr2D 94.365 834 36 4 3031 3857 55372302 55371473 0.000000e+00 1269.0
11 TraesCS2B01G120200 chr2D 95.730 445 13 2 2565 3008 55373278 55372839 0.000000e+00 712.0
12 TraesCS2B01G120200 chr2D 94.131 443 16 5 2546 2986 39821106 39821540 0.000000e+00 665.0
13 TraesCS2B01G120200 chr2D 91.120 259 15 5 6444 6697 39830553 39830808 1.790000e-90 344.0
14 TraesCS2B01G120200 chr2D 95.327 214 7 2 4727 4940 55354905 55354695 2.990000e-88 337.0
15 TraesCS2B01G120200 chr2D 90.189 265 9 7 407 665 55375576 55375323 5.010000e-86 329.0
16 TraesCS2B01G120200 chr2D 96.324 136 5 0 2409 2544 39820809 39820944 2.430000e-54 224.0
17 TraesCS2B01G120200 chr2D 93.478 138 8 1 2409 2546 55373581 55373445 3.170000e-48 204.0
18 TraesCS2B01G120200 chr2D 93.182 132 8 1 6566 6697 55356674 55356804 6.850000e-45 193.0
19 TraesCS2B01G120200 chr2D 92.941 85 6 0 3188 3272 55372384 55372300 2.540000e-24 124.0
20 TraesCS2B01G120200 chr2D 91.765 85 6 1 2428 2512 39821108 39821191 4.240000e-22 117.0
21 TraesCS2B01G120200 chr2D 94.340 53 3 0 2634 2686 39820809 39820861 1.550000e-11 82.4
22 TraesCS2B01G120200 chr2D 100.000 35 0 0 2652 2686 39821107 39821141 1.560000e-06 65.8
23 TraesCS2B01G120200 chr2A 93.919 2401 84 24 4060 6450 56920559 56918211 0.000000e+00 3568.0
24 TraesCS2B01G120200 chr2A 94.407 1323 49 11 2546 3857 56921869 56920561 0.000000e+00 2010.0
25 TraesCS2B01G120200 chr2A 88.467 1396 81 36 973 2327 56923519 56922163 0.000000e+00 1613.0
26 TraesCS2B01G120200 chr2A 87.580 467 16 13 1122 1557 44391858 44392313 2.790000e-138 503.0
27 TraesCS2B01G120200 chr2A 94.964 139 7 0 2409 2547 56922164 56922026 1.130000e-52 219.0
28 TraesCS2B01G120200 chr2A 86.829 205 12 7 407 605 56924390 56924195 1.460000e-51 215.0
29 TraesCS2B01G120200 chr2A 83.028 218 25 6 1 209 56924723 56924509 3.190000e-43 187.0
30 TraesCS2B01G120200 chr2A 86.905 168 6 6 487 648 44391326 44391483 2.480000e-39 174.0
31 TraesCS2B01G120200 chr2A 92.308 91 7 0 2320 2410 699439203 699439293 5.450000e-26 130.0
32 TraesCS2B01G120200 chr2A 98.507 67 1 0 487 553 44390993 44391059 1.180000e-22 119.0
33 TraesCS2B01G120200 chr2A 91.765 85 6 1 2428 2512 56921867 56921784 4.240000e-22 117.0
34 TraesCS2B01G120200 chr2A 91.071 56 5 0 2634 2689 56922164 56922109 7.200000e-10 76.8
35 TraesCS2B01G120200 chr2A 97.368 38 1 0 2652 2689 56921868 56921831 1.560000e-06 65.8
36 TraesCS2B01G120200 chr4A 84.467 1352 148 33 5095 6406 520188859 520190188 0.000000e+00 1277.0
37 TraesCS2B01G120200 chr4A 77.490 1004 205 17 4157 5149 176598069 176597076 3.480000e-162 582.0
38 TraesCS2B01G120200 chr4A 80.679 383 26 16 3720 4086 520188494 520188844 3.100000e-63 254.0
39 TraesCS2B01G120200 chr4A 88.350 103 10 2 2326 2427 472397878 472397979 9.120000e-24 122.0
40 TraesCS2B01G120200 chr4D 84.581 1336 113 36 5101 6405 191269892 191271165 0.000000e+00 1240.0
41 TraesCS2B01G120200 chr4D 77.778 999 209 12 4157 5149 303065740 303066731 2.670000e-168 603.0
42 TraesCS2B01G120200 chr4D 86.612 366 27 8 3720 4084 191269544 191269888 1.050000e-102 385.0
43 TraesCS2B01G120200 chr7D 85.226 1171 121 25 5273 6405 559668816 559667660 0.000000e+00 1157.0
44 TraesCS2B01G120200 chr7D 79.118 340 25 20 3720 4043 559671245 559670936 6.850000e-45 193.0
45 TraesCS2B01G120200 chr7D 91.209 91 8 0 2320 2410 195626092 195626182 2.540000e-24 124.0
46 TraesCS2B01G120200 chr7B 86.154 1040 84 23 5392 6405 620579439 620580444 0.000000e+00 1068.0
47 TraesCS2B01G120200 chr7B 86.594 276 31 5 5101 5373 620573622 620573894 3.930000e-77 300.0
48 TraesCS2B01G120200 chr7B 93.478 92 6 0 3995 4086 620573529 620573620 3.260000e-28 137.0
49 TraesCS2B01G120200 chr7A 83.652 838 99 29 2918 3750 352983478 352982674 0.000000e+00 754.0
50 TraesCS2B01G120200 chr4B 77.988 1004 200 17 4157 5149 377789899 377790892 1.600000e-170 610.0
51 TraesCS2B01G120200 chr5A 91.753 97 7 1 2319 2415 393474472 393474377 4.210000e-27 134.0
52 TraesCS2B01G120200 chr3D 95.122 82 4 0 2329 2410 74446983 74446902 5.450000e-26 130.0
53 TraesCS2B01G120200 chr3D 91.463 82 6 1 3720 3800 12627993 12628074 1.970000e-20 111.0
54 TraesCS2B01G120200 chr3D 89.535 86 7 2 3720 3803 253557853 253557768 2.550000e-19 108.0
55 TraesCS2B01G120200 chr3B 93.103 87 6 0 2326 2412 39349865 39349951 1.960000e-25 128.0
56 TraesCS2B01G120200 chr1D 89.899 99 9 1 2321 2419 42391807 42391710 7.050000e-25 126.0
57 TraesCS2B01G120200 chr5B 86.726 113 11 4 2325 2437 184285350 184285242 9.120000e-24 122.0
58 TraesCS2B01G120200 chr5D 90.244 82 7 1 3720 3800 482214820 482214901 9.190000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G120200 chr2B 87842544 87849240 6696 True 2992.600000 10573 95.689500 1 6697 4 chr2B.!!$R1 6696
1 TraesCS2B01G120200 chr2D 39827428 39830808 3380 False 1804.000000 3751 94.318667 3044 6697 3 chr2D.!!$F3 3653
2 TraesCS2B01G120200 chr2D 55369405 55375576 6171 True 1027.285714 2988 92.826857 407 6141 7 chr2D.!!$R2 5734
3 TraesCS2B01G120200 chr2D 39819594 39821540 1946 False 453.700000 1568 94.484833 1133 2986 6 chr2D.!!$F2 1853
4 TraesCS2B01G120200 chr2A 56918211 56924723 6512 True 896.844444 3568 91.313111 1 6450 9 chr2A.!!$R1 6449
5 TraesCS2B01G120200 chr2A 44390993 44392313 1320 False 265.333333 503 90.997333 487 1557 3 chr2A.!!$F2 1070
6 TraesCS2B01G120200 chr4A 520188494 520190188 1694 False 765.500000 1277 82.573000 3720 6406 2 chr4A.!!$F2 2686
7 TraesCS2B01G120200 chr4A 176597076 176598069 993 True 582.000000 582 77.490000 4157 5149 1 chr4A.!!$R1 992
8 TraesCS2B01G120200 chr4D 191269544 191271165 1621 False 812.500000 1240 85.596500 3720 6405 2 chr4D.!!$F2 2685
9 TraesCS2B01G120200 chr4D 303065740 303066731 991 False 603.000000 603 77.778000 4157 5149 1 chr4D.!!$F1 992
10 TraesCS2B01G120200 chr7D 559667660 559671245 3585 True 675.000000 1157 82.172000 3720 6405 2 chr7D.!!$R1 2685
11 TraesCS2B01G120200 chr7B 620579439 620580444 1005 False 1068.000000 1068 86.154000 5392 6405 1 chr7B.!!$F1 1013
12 TraesCS2B01G120200 chr7A 352982674 352983478 804 True 754.000000 754 83.652000 2918 3750 1 chr7A.!!$R1 832
13 TraesCS2B01G120200 chr4B 377789899 377790892 993 False 610.000000 610 77.988000 4157 5149 1 chr4B.!!$F1 992

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
666 1587 0.107214 GATCAAATCTCCGCACCCCA 60.107 55.000 0.00 0.00 0.00 4.96 F
667 1588 0.394352 ATCAAATCTCCGCACCCCAC 60.394 55.000 0.00 0.00 0.00 4.61 F
1959 3237 0.323451 CCCCCTTTGGCTGTTAGTCC 60.323 60.000 0.00 0.00 0.00 3.85 F
2818 4259 0.692476 TCCTGTATGGTGCAGCTGTT 59.308 50.000 18.08 4.71 37.07 3.16 F
2819 4260 1.073763 TCCTGTATGGTGCAGCTGTTT 59.926 47.619 18.08 2.17 37.07 2.83 F
4028 6029 0.178992 CCTTTTGGTGCCTCAGTGGA 60.179 55.000 0.00 0.00 34.23 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1718 2991 0.420272 TCCCCCTAGTGCTAAGGGTT 59.580 55.000 14.92 0.00 41.19 4.11 R
2591 4030 0.826715 ACCGAGATAGCACATGCACT 59.173 50.000 6.64 2.51 45.16 4.40 R
3532 5496 0.107945 CCTGAGTAAGTGCCTCCTGC 60.108 60.000 0.00 0.00 41.77 4.85 R
3740 5704 1.195448 CCGTTTCAGTCTGATGTGTGC 59.805 52.381 2.68 0.00 0.00 4.57 R
4036 6037 4.668576 AAATGCACAAGACACGTATCAG 57.331 40.909 0.00 0.00 0.00 2.90 R
5828 9887 0.880278 TCCTGTTCAACTGCTGCGTC 60.880 55.000 0.00 0.00 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.450965 CCAAGGACAAATCTCAATATGCCAC 60.451 44.000 0.00 0.00 0.00 5.01
35 36 4.210331 AGGACAAATCTCAATATGCCACC 58.790 43.478 0.00 0.00 0.00 4.61
36 37 3.319122 GGACAAATCTCAATATGCCACCC 59.681 47.826 0.00 0.00 0.00 4.61
38 39 2.951642 CAAATCTCAATATGCCACCCGT 59.048 45.455 0.00 0.00 0.00 5.28
40 41 3.685139 ATCTCAATATGCCACCCGTAG 57.315 47.619 0.00 0.00 0.00 3.51
62 63 0.539986 GGTGAAGCGACCTATGGGAA 59.460 55.000 0.25 0.00 36.25 3.97
63 64 1.141053 GGTGAAGCGACCTATGGGAAT 59.859 52.381 0.25 0.00 36.25 3.01
64 65 2.484889 GTGAAGCGACCTATGGGAATC 58.515 52.381 0.25 0.00 36.25 2.52
66 67 2.503765 TGAAGCGACCTATGGGAATCAA 59.496 45.455 0.25 0.00 36.25 2.57
67 68 3.136443 TGAAGCGACCTATGGGAATCAAT 59.864 43.478 0.25 0.00 36.25 2.57
69 70 1.537202 GCGACCTATGGGAATCAATGC 59.463 52.381 0.25 0.00 36.25 3.56
70 71 2.811873 GCGACCTATGGGAATCAATGCT 60.812 50.000 0.25 0.00 36.25 3.79
72 73 4.641396 CGACCTATGGGAATCAATGCTTA 58.359 43.478 0.25 0.00 36.25 3.09
73 74 4.452455 CGACCTATGGGAATCAATGCTTAC 59.548 45.833 0.25 0.00 36.25 2.34
74 75 5.625150 GACCTATGGGAATCAATGCTTACT 58.375 41.667 0.25 0.00 36.25 2.24
75 76 5.625150 ACCTATGGGAATCAATGCTTACTC 58.375 41.667 0.25 0.00 36.25 2.59
76 77 5.132648 ACCTATGGGAATCAATGCTTACTCA 59.867 40.000 0.25 0.00 36.25 3.41
103 109 3.184541 TCGTAGAGAGCAAAATAACGCC 58.815 45.455 0.00 0.00 0.00 5.68
116 122 1.027792 TAACGCCGGCCATTTCCTTC 61.028 55.000 23.46 0.00 0.00 3.46
117 123 3.876198 CGCCGGCCATTTCCTTCG 61.876 66.667 23.46 0.00 0.00 3.79
125 131 3.367630 CGGCCATTTCCTTCGAAATTTTG 59.632 43.478 2.24 0.00 44.62 2.44
134 140 4.331717 TCCTTCGAAATTTTGATAGGACGC 59.668 41.667 22.58 0.00 30.12 5.19
136 142 5.220854 CCTTCGAAATTTTGATAGGACGCAT 60.221 40.000 20.92 0.00 0.00 4.73
140 146 6.038161 TCGAAATTTTGATAGGACGCATGATT 59.962 34.615 3.86 0.00 0.00 2.57
141 147 6.141211 CGAAATTTTGATAGGACGCATGATTG 59.859 38.462 0.00 0.00 0.00 2.67
145 151 3.466836 TGATAGGACGCATGATTGAACC 58.533 45.455 0.00 0.00 0.00 3.62
158 165 1.464734 TTGAACCGTTGTTGGCTTCA 58.535 45.000 0.00 0.00 33.97 3.02
161 168 1.404035 GAACCGTTGTTGGCTTCACTT 59.596 47.619 0.00 0.00 33.97 3.16
162 169 1.021968 ACCGTTGTTGGCTTCACTTC 58.978 50.000 0.00 0.00 0.00 3.01
173 180 0.246635 CTTCACTTCGGTCCGGACAT 59.753 55.000 34.40 12.36 0.00 3.06
187 194 1.312815 GGACATTGTCCCTAGCATGC 58.687 55.000 23.00 10.51 46.19 4.06
188 195 1.408683 GGACATTGTCCCTAGCATGCA 60.409 52.381 23.00 5.01 46.19 3.96
189 196 1.672881 GACATTGTCCCTAGCATGCAC 59.327 52.381 21.98 9.41 0.00 4.57
209 216 1.610522 CAGGGTTGGACTTTTGAGCTG 59.389 52.381 0.00 0.00 0.00 4.24
210 217 1.494721 AGGGTTGGACTTTTGAGCTGA 59.505 47.619 0.00 0.00 0.00 4.26
211 218 1.882623 GGGTTGGACTTTTGAGCTGAG 59.117 52.381 0.00 0.00 0.00 3.35
212 219 2.576615 GGTTGGACTTTTGAGCTGAGT 58.423 47.619 0.00 0.00 0.00 3.41
213 220 2.952310 GGTTGGACTTTTGAGCTGAGTT 59.048 45.455 0.00 0.00 0.00 3.01
215 222 2.575532 TGGACTTTTGAGCTGAGTTGG 58.424 47.619 0.00 0.00 0.00 3.77
216 223 2.092429 TGGACTTTTGAGCTGAGTTGGT 60.092 45.455 0.00 0.00 0.00 3.67
217 224 2.952310 GGACTTTTGAGCTGAGTTGGTT 59.048 45.455 0.00 0.00 0.00 3.67
218 225 3.003793 GGACTTTTGAGCTGAGTTGGTTC 59.996 47.826 0.00 0.00 0.00 3.62
219 226 3.879892 GACTTTTGAGCTGAGTTGGTTCT 59.120 43.478 0.00 0.00 0.00 3.01
220 227 4.273318 ACTTTTGAGCTGAGTTGGTTCTT 58.727 39.130 0.00 0.00 0.00 2.52
221 228 4.706962 ACTTTTGAGCTGAGTTGGTTCTTT 59.293 37.500 0.00 0.00 0.00 2.52
222 229 5.185828 ACTTTTGAGCTGAGTTGGTTCTTTT 59.814 36.000 0.00 0.00 0.00 2.27
223 230 5.659440 TTTGAGCTGAGTTGGTTCTTTTT 57.341 34.783 0.00 0.00 0.00 1.94
294 326 9.020731 GTATTTTTAAGAAGATTGGGGAACTGA 57.979 33.333 0.00 0.00 0.00 3.41
295 327 7.524717 TTTTTAAGAAGATTGGGGAACTGAG 57.475 36.000 0.00 0.00 0.00 3.35
296 328 5.843019 TTAAGAAGATTGGGGAACTGAGT 57.157 39.130 0.00 0.00 0.00 3.41
297 329 4.731313 AAGAAGATTGGGGAACTGAGTT 57.269 40.909 0.00 0.00 0.00 3.01
298 330 4.731313 AGAAGATTGGGGAACTGAGTTT 57.269 40.909 0.00 0.00 0.00 2.66
299 331 5.066913 AGAAGATTGGGGAACTGAGTTTT 57.933 39.130 0.00 0.00 0.00 2.43
300 332 5.458595 AGAAGATTGGGGAACTGAGTTTTT 58.541 37.500 0.00 0.00 0.00 1.94
325 357 8.746052 TTAATTGAAATGTAGGGAATCGATGT 57.254 30.769 0.00 0.00 0.00 3.06
326 358 7.645058 AATTGAAATGTAGGGAATCGATGTT 57.355 32.000 0.00 0.00 0.00 2.71
327 359 7.645058 ATTGAAATGTAGGGAATCGATGTTT 57.355 32.000 0.00 0.00 0.00 2.83
328 360 7.461182 TTGAAATGTAGGGAATCGATGTTTT 57.539 32.000 0.00 0.00 0.00 2.43
329 361 7.461182 TGAAATGTAGGGAATCGATGTTTTT 57.539 32.000 0.00 0.00 0.00 1.94
351 383 8.950208 TTTTTCGTTTTGAAATGTAGGGAATT 57.050 26.923 0.00 0.00 45.62 2.17
352 384 7.938563 TTTCGTTTTGAAATGTAGGGAATTG 57.061 32.000 0.00 0.00 41.59 2.32
353 385 6.885952 TCGTTTTGAAATGTAGGGAATTGA 57.114 33.333 0.00 0.00 0.00 2.57
354 386 6.908825 TCGTTTTGAAATGTAGGGAATTGAG 58.091 36.000 0.00 0.00 0.00 3.02
355 387 6.488683 TCGTTTTGAAATGTAGGGAATTGAGT 59.511 34.615 0.00 0.00 0.00 3.41
356 388 7.013846 TCGTTTTGAAATGTAGGGAATTGAGTT 59.986 33.333 0.00 0.00 0.00 3.01
357 389 7.114811 CGTTTTGAAATGTAGGGAATTGAGTTG 59.885 37.037 0.00 0.00 0.00 3.16
358 390 6.588719 TTGAAATGTAGGGAATTGAGTTGG 57.411 37.500 0.00 0.00 0.00 3.77
359 391 5.640147 TGAAATGTAGGGAATTGAGTTGGT 58.360 37.500 0.00 0.00 0.00 3.67
360 392 6.074648 TGAAATGTAGGGAATTGAGTTGGTT 58.925 36.000 0.00 0.00 0.00 3.67
361 393 6.208599 TGAAATGTAGGGAATTGAGTTGGTTC 59.791 38.462 0.00 0.00 0.00 3.62
362 394 4.028993 TGTAGGGAATTGAGTTGGTTCC 57.971 45.455 0.00 0.00 40.50 3.62
363 395 3.655777 TGTAGGGAATTGAGTTGGTTCCT 59.344 43.478 3.68 0.00 40.91 3.36
364 396 3.903530 AGGGAATTGAGTTGGTTCCTT 57.096 42.857 3.68 0.00 40.91 3.36
365 397 4.199002 AGGGAATTGAGTTGGTTCCTTT 57.801 40.909 3.68 0.00 40.91 3.11
366 398 4.556697 AGGGAATTGAGTTGGTTCCTTTT 58.443 39.130 3.68 0.00 40.91 2.27
367 399 4.968719 AGGGAATTGAGTTGGTTCCTTTTT 59.031 37.500 3.68 0.00 40.91 1.94
462 494 0.526739 GGCACACAACCCGTTTCAAC 60.527 55.000 0.00 0.00 0.00 3.18
480 512 4.493747 CGGAGCGGACGGACCTTC 62.494 72.222 0.00 0.00 36.31 3.46
481 513 3.069318 GGAGCGGACGGACCTTCT 61.069 66.667 0.00 0.00 36.31 2.85
482 514 2.647158 GGAGCGGACGGACCTTCTT 61.647 63.158 0.00 0.00 36.31 2.52
483 515 1.153804 GAGCGGACGGACCTTCTTC 60.154 63.158 0.00 0.00 36.31 2.87
484 516 2.506438 GCGGACGGACCTTCTTCG 60.506 66.667 0.00 0.00 36.31 3.79
485 517 2.506438 CGGACGGACCTTCTTCGC 60.506 66.667 0.00 0.00 36.31 4.70
594 966 2.182030 CGACTCGCTTCACTCCCC 59.818 66.667 0.00 0.00 0.00 4.81
595 967 2.344203 CGACTCGCTTCACTCCCCT 61.344 63.158 0.00 0.00 0.00 4.79
656 1577 1.592669 CGCCGCTCCGATCAAATCT 60.593 57.895 0.00 0.00 0.00 2.40
662 1583 1.212616 CTCCGATCAAATCTCCGCAC 58.787 55.000 0.00 0.00 0.00 5.34
665 1586 1.160329 CGATCAAATCTCCGCACCCC 61.160 60.000 0.00 0.00 0.00 4.95
666 1587 0.107214 GATCAAATCTCCGCACCCCA 60.107 55.000 0.00 0.00 0.00 4.96
667 1588 0.394352 ATCAAATCTCCGCACCCCAC 60.394 55.000 0.00 0.00 0.00 4.61
668 1589 2.046285 CAAATCTCCGCACCCCACC 61.046 63.158 0.00 0.00 0.00 4.61
1231 2482 4.957296 TCTGGATTATTAACCGCCTCTTC 58.043 43.478 0.00 0.00 0.00 2.87
1265 2516 2.434359 GCAGGCTACGTGACCACC 60.434 66.667 10.85 0.00 0.00 4.61
1354 2605 1.913403 GGCGATTCGTGCTGATTTTTG 59.087 47.619 8.03 0.00 0.00 2.44
1355 2606 2.584791 GCGATTCGTGCTGATTTTTGT 58.415 42.857 8.03 0.00 0.00 2.83
1356 2607 2.339400 GCGATTCGTGCTGATTTTTGTG 59.661 45.455 8.03 0.00 0.00 3.33
1361 2612 6.507771 CGATTCGTGCTGATTTTTGTGTTTTT 60.508 34.615 0.00 0.00 0.00 1.94
1362 2613 5.447478 TCGTGCTGATTTTTGTGTTTTTG 57.553 34.783 0.00 0.00 0.00 2.44
1364 2615 5.014483 CGTGCTGATTTTTGTGTTTTTGTG 58.986 37.500 0.00 0.00 0.00 3.33
1368 2619 5.789512 GCTGATTTTTGTGTTTTTGTGTGTG 59.210 36.000 0.00 0.00 0.00 3.82
1393 2644 5.051153 GGATTTAGGAGGTCGTCTTTCATC 58.949 45.833 0.00 0.00 0.00 2.92
1418 2669 2.311688 GATCCCGTGGAGCCGATTGT 62.312 60.000 0.00 0.00 34.05 2.71
1518 2782 6.253727 CCATGATGTCGACTCTTTTGTAGTAC 59.746 42.308 17.92 0.00 0.00 2.73
1579 2843 6.398095 TGATGTCTAGTCATCATCGTTTGTT 58.602 36.000 23.35 0.00 45.89 2.83
1585 2849 3.187227 AGTCATCATCGTTTGTTGTGCTC 59.813 43.478 0.00 0.00 0.00 4.26
1589 2853 2.948979 TCATCGTTTGTTGTGCTCCTTT 59.051 40.909 0.00 0.00 0.00 3.11
1590 2854 4.130857 TCATCGTTTGTTGTGCTCCTTTA 58.869 39.130 0.00 0.00 0.00 1.85
1594 2858 4.024387 TCGTTTGTTGTGCTCCTTTATGTC 60.024 41.667 0.00 0.00 0.00 3.06
1605 2869 6.258947 GTGCTCCTTTATGTCAAGATTCTACC 59.741 42.308 0.00 0.00 0.00 3.18
1620 2884 6.702329 AGATTCTACCCGGAATTAAGCATAG 58.298 40.000 0.73 0.00 36.24 2.23
1623 2887 5.091552 TCTACCCGGAATTAAGCATAGGAT 58.908 41.667 0.73 0.00 0.00 3.24
1680 2945 1.860676 TTTGGTGTAGTGTCTGTCGC 58.139 50.000 0.00 0.00 0.00 5.19
1683 2956 0.518636 GGTGTAGTGTCTGTCGCGTA 59.481 55.000 5.77 0.00 0.00 4.42
1717 2990 9.132923 TGTTGAGATACCGTTCTCTTCTTATAT 57.867 33.333 8.25 0.00 42.22 0.86
1854 3132 4.270808 TGCATCTGCGATATGTTACACTTG 59.729 41.667 0.00 0.00 45.83 3.16
1856 3134 4.123497 TCTGCGATATGTTACACTTGCT 57.877 40.909 9.46 0.00 0.00 3.91
1958 3236 3.266240 CCCCCTTTGGCTGTTAGTC 57.734 57.895 0.00 0.00 0.00 2.59
1959 3237 0.323451 CCCCCTTTGGCTGTTAGTCC 60.323 60.000 0.00 0.00 0.00 3.85
2014 3293 1.621317 CCCGGTGCCCAGTTAATTTTT 59.379 47.619 0.00 0.00 0.00 1.94
2064 3344 3.947196 AGTGAATCAGTGAAAGTGTTGCA 59.053 39.130 0.00 0.00 38.75 4.08
2084 3364 9.486497 TGTTGCAAATGCTAGAAAATCATTTAA 57.514 25.926 0.00 0.00 38.07 1.52
2164 3445 1.953686 GCTGTTTGTGCCTTTGAGGTA 59.046 47.619 0.00 0.00 37.80 3.08
2165 3446 2.558359 GCTGTTTGTGCCTTTGAGGTAT 59.442 45.455 0.00 0.00 37.80 2.73
2166 3447 3.005791 GCTGTTTGTGCCTTTGAGGTATT 59.994 43.478 0.00 0.00 37.80 1.89
2254 3535 7.212976 GTCTCCAGCTTTCTGATAATGTGATA 58.787 38.462 0.00 0.00 42.95 2.15
2257 3538 9.716531 CTCCAGCTTTCTGATAATGTGATAATA 57.283 33.333 0.00 0.00 42.95 0.98
2261 3542 7.604164 AGCTTTCTGATAATGTGATAATACCCG 59.396 37.037 0.00 0.00 0.00 5.28
2314 3595 1.135333 GGTCTCTACCTCTTGCTTCCG 59.865 57.143 0.00 0.00 43.08 4.30
2325 3606 4.459337 CCTCTTGCTTCCGTTAAAATTCCT 59.541 41.667 0.00 0.00 0.00 3.36
2326 3607 5.646360 CCTCTTGCTTCCGTTAAAATTCCTA 59.354 40.000 0.00 0.00 0.00 2.94
2327 3608 6.318900 CCTCTTGCTTCCGTTAAAATTCCTAT 59.681 38.462 0.00 0.00 0.00 2.57
2328 3609 7.148069 CCTCTTGCTTCCGTTAAAATTCCTATT 60.148 37.037 0.00 0.00 0.00 1.73
2329 3610 7.758495 TCTTGCTTCCGTTAAAATTCCTATTC 58.242 34.615 0.00 0.00 0.00 1.75
2330 3611 6.445357 TGCTTCCGTTAAAATTCCTATTCC 57.555 37.500 0.00 0.00 0.00 3.01
2331 3612 5.358725 TGCTTCCGTTAAAATTCCTATTCCC 59.641 40.000 0.00 0.00 0.00 3.97
2332 3613 5.593095 GCTTCCGTTAAAATTCCTATTCCCT 59.407 40.000 0.00 0.00 0.00 4.20
2333 3614 6.238676 GCTTCCGTTAAAATTCCTATTCCCTC 60.239 42.308 0.00 0.00 0.00 4.30
2334 3615 6.570654 TCCGTTAAAATTCCTATTCCCTCT 57.429 37.500 0.00 0.00 0.00 3.69
2335 3616 6.354130 TCCGTTAAAATTCCTATTCCCTCTG 58.646 40.000 0.00 0.00 0.00 3.35
2336 3617 6.069847 TCCGTTAAAATTCCTATTCCCTCTGT 60.070 38.462 0.00 0.00 0.00 3.41
2337 3618 7.126115 TCCGTTAAAATTCCTATTCCCTCTGTA 59.874 37.037 0.00 0.00 0.00 2.74
2338 3619 7.771826 CCGTTAAAATTCCTATTCCCTCTGTAA 59.228 37.037 0.00 0.00 0.00 2.41
2339 3620 9.169592 CGTTAAAATTCCTATTCCCTCTGTAAA 57.830 33.333 0.00 0.00 0.00 2.01
2343 3624 9.822727 AAAATTCCTATTCCCTCTGTAAAGAAA 57.177 29.630 0.00 0.00 0.00 2.52
2344 3625 9.997172 AAATTCCTATTCCCTCTGTAAAGAAAT 57.003 29.630 0.00 0.00 0.00 2.17
2354 3635 9.268282 TCCCTCTGTAAAGAAATATAAGAGTGT 57.732 33.333 0.00 0.00 0.00 3.55
2355 3636 9.892130 CCCTCTGTAAAGAAATATAAGAGTGTT 57.108 33.333 0.00 0.00 0.00 3.32
2386 3667 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
2387 3668 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
2388 3669 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
2389 3670 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
2401 3682 9.314321 TCTAAACGCTCTTATATTTTCTGAAGG 57.686 33.333 0.00 0.00 0.00 3.46
2402 3683 9.314321 CTAAACGCTCTTATATTTTCTGAAGGA 57.686 33.333 0.00 0.00 0.00 3.36
2403 3684 7.778470 AACGCTCTTATATTTTCTGAAGGAG 57.222 36.000 0.00 0.00 0.00 3.69
2404 3685 6.284459 ACGCTCTTATATTTTCTGAAGGAGG 58.716 40.000 0.00 0.00 0.00 4.30
2405 3686 5.698545 CGCTCTTATATTTTCTGAAGGAGGG 59.301 44.000 0.00 0.00 0.00 4.30
2406 3687 6.463049 CGCTCTTATATTTTCTGAAGGAGGGA 60.463 42.308 0.00 0.00 0.00 4.20
2407 3688 6.934083 GCTCTTATATTTTCTGAAGGAGGGAG 59.066 42.308 0.00 0.00 0.00 4.30
2417 3698 6.398655 TCTGAAGGAGGGAGTAGTTTACTA 57.601 41.667 0.00 0.00 39.59 1.82
2426 3707 9.230122 GGAGGGAGTAGTTTACTATACATAGAC 57.770 40.741 3.27 0.00 39.59 2.59
2483 3764 4.984785 AGACTATAACGTGCATGTGCTATG 59.015 41.667 13.39 5.18 42.66 2.23
2486 3767 1.807139 AACGTGCATGTGCTATGTCA 58.193 45.000 13.39 0.90 42.66 3.58
2490 3771 3.181507 ACGTGCATGTGCTATGTCAATTC 60.182 43.478 11.65 0.00 42.66 2.17
2548 3829 8.998277 ATTCCTAGCTCACTTTACATACTAGA 57.002 34.615 0.00 0.00 0.00 2.43
2549 3830 8.818622 TTCCTAGCTCACTTTACATACTAGAA 57.181 34.615 0.00 0.00 0.00 2.10
2550 3831 8.453238 TCCTAGCTCACTTTACATACTAGAAG 57.547 38.462 0.00 0.00 0.00 2.85
2552 3833 6.531503 AGCTCACTTTACATACTAGAAGCA 57.468 37.500 0.00 0.00 0.00 3.91
2553 3834 6.936279 AGCTCACTTTACATACTAGAAGCAA 58.064 36.000 0.00 0.00 0.00 3.91
2555 3836 8.043710 AGCTCACTTTACATACTAGAAGCAATT 58.956 33.333 0.00 0.00 0.00 2.32
2610 4049 0.826715 AGTGCATGTGCTATCTCGGT 59.173 50.000 6.55 0.00 42.66 4.69
2621 4060 3.678072 TGCTATCTCGGTTTTCTTTGACG 59.322 43.478 0.00 0.00 0.00 4.35
2625 4064 4.572985 TCTCGGTTTTCTTTGACGTCTA 57.427 40.909 17.92 6.32 0.00 2.59
2626 4065 4.293415 TCTCGGTTTTCTTTGACGTCTAC 58.707 43.478 17.92 3.59 0.00 2.59
2674 4113 7.339466 ACGAGAAGCAATTTATTCTACCCAAAT 59.661 33.333 0.00 0.00 35.93 2.32
2735 4175 1.604278 GCTTTCTTTGGACGAGCTGTT 59.396 47.619 0.00 0.00 31.88 3.16
2766 4206 8.680903 TGTTTTGTTTTACGTGGAACCTATTTA 58.319 29.630 0.00 0.00 0.00 1.40
2817 4258 0.914644 ATCCTGTATGGTGCAGCTGT 59.085 50.000 18.08 8.46 37.07 4.40
2818 4259 0.692476 TCCTGTATGGTGCAGCTGTT 59.308 50.000 18.08 4.71 37.07 3.16
2819 4260 1.073763 TCCTGTATGGTGCAGCTGTTT 59.926 47.619 18.08 2.17 37.07 2.83
2820 4261 1.200716 CCTGTATGGTGCAGCTGTTTG 59.799 52.381 18.08 4.79 32.93 2.93
2821 4262 1.881973 CTGTATGGTGCAGCTGTTTGT 59.118 47.619 18.08 0.89 0.00 2.83
2824 4265 3.885901 TGTATGGTGCAGCTGTTTGTTTA 59.114 39.130 18.08 0.00 0.00 2.01
2830 4271 5.068460 TGGTGCAGCTGTTTGTTTAGTTTAT 59.932 36.000 18.08 0.00 0.00 1.40
3195 5159 7.551035 AAGCTAATCTTAAGACAATGCTGAG 57.449 36.000 18.44 3.98 32.10 3.35
3209 5173 1.291877 GCTGAGTGTACTGCAACCCG 61.292 60.000 0.00 0.00 35.40 5.28
3211 5175 2.032071 AGTGTACTGCAACCCGGC 59.968 61.111 0.00 0.00 0.00 6.13
3394 5358 7.153985 CAGATGAAGTGGAAAATTTAAAGGCA 58.846 34.615 0.00 0.00 0.00 4.75
3532 5496 1.345415 AGCATTGCCAAACTTGAAGGG 59.655 47.619 4.70 0.00 0.00 3.95
3584 5548 6.767902 GCAAAATATACAAGACCATGAGAGGA 59.232 38.462 0.00 0.00 0.00 3.71
3804 5775 9.398170 CCTCTGTTTGAAAATACAGTGTATTTG 57.602 33.333 31.96 21.03 41.87 2.32
3815 5786 5.941948 ACAGTGTATTTGCCTGTCTAAAC 57.058 39.130 0.00 0.00 34.44 2.01
3840 5811 8.956426 ACTTGAACTTTGACTGTAAATTTCTCA 58.044 29.630 0.00 0.00 33.17 3.27
3892 5863 6.545504 TCATAAGAAAGTGCTTCTCAACAC 57.454 37.500 0.00 0.00 44.00 3.32
3900 5871 6.893958 AAGTGCTTCTCAACACGAATATAG 57.106 37.500 0.00 0.00 41.72 1.31
3929 5915 8.158445 GTGTCTATTTTGTGTAACGTAAGCTAC 58.842 37.037 0.00 0.00 42.39 3.58
3971 5972 3.196469 TGGTCAAAGCACAAATTTGGACA 59.804 39.130 21.74 6.97 38.04 4.02
3976 5977 3.996150 AGCACAAATTTGGACAGTCAG 57.004 42.857 21.74 3.22 0.00 3.51
3979 5980 4.586001 AGCACAAATTTGGACAGTCAGAAT 59.414 37.500 21.74 0.00 0.00 2.40
3982 5983 6.294176 GCACAAATTTGGACAGTCAGAATACT 60.294 38.462 21.74 0.00 0.00 2.12
4028 6029 0.178992 CCTTTTGGTGCCTCAGTGGA 60.179 55.000 0.00 0.00 34.23 4.02
4036 6037 2.565841 GTGCCTCAGTGGATATGGTTC 58.434 52.381 0.00 0.00 38.35 3.62
4638 8601 7.333528 TGTTTTTCATATCCTAACTGATGCC 57.666 36.000 0.00 0.00 0.00 4.40
4725 8688 9.855361 CATGTCGTAAACTATGAAGAAATGATC 57.145 33.333 0.00 0.00 0.00 2.92
4740 8703 6.744112 AGAAATGATCTTAGAGAAGCTACCG 58.256 40.000 0.00 0.00 33.39 4.02
4754 8717 2.751806 AGCTACCGAAGTTTAGTACGCT 59.248 45.455 0.00 0.00 0.00 5.07
4926 8889 4.011698 TGGATGATGATGTGGTTGTTCAG 58.988 43.478 0.00 0.00 0.00 3.02
4929 8892 0.523072 ATGATGTGGTTGTTCAGCGC 59.477 50.000 0.00 0.00 0.00 5.92
5150 9150 3.746940 TGCTCCTTAAACAGGTTGGTAC 58.253 45.455 0.00 0.00 44.37 3.34
5321 9326 6.617529 GCATTAATTTTTGTTACGGGCAAGTG 60.618 38.462 0.00 0.00 0.00 3.16
5378 9386 6.200286 CGAACAACGGTGCTTCATATAGTTAT 59.800 38.462 0.00 0.00 38.46 1.89
5379 9387 7.380333 CGAACAACGGTGCTTCATATAGTTATA 59.620 37.037 0.00 0.00 38.46 0.98
5382 9390 6.282199 ACGGTGCTTCATATAGTTATAGGG 57.718 41.667 0.00 0.00 0.00 3.53
5390 9398 6.852420 TCATATAGTTATAGGGCACTGGAC 57.148 41.667 0.00 0.00 0.00 4.02
5478 9502 7.010460 CCTTTTCTTTAAGCCTGTTGTCTTTTG 59.990 37.037 0.00 0.00 0.00 2.44
5714 9754 2.191128 AGCACACTTGATCAGAACCC 57.809 50.000 0.00 0.00 0.00 4.11
5759 9800 1.101635 GGCCTCCACCTAAAATCCGC 61.102 60.000 0.00 0.00 0.00 5.54
5761 9802 0.254747 CCTCCACCTAAAATCCGCCA 59.745 55.000 0.00 0.00 0.00 5.69
5792 9851 0.543749 ATGCCTGTAGCTCCCAAGAC 59.456 55.000 0.00 0.00 44.23 3.01
5816 9875 2.292267 CACTGTCATTGGCTACCATCC 58.708 52.381 0.00 0.00 31.53 3.51
5828 9887 3.689649 GGCTACCATCCACAACAAACTAG 59.310 47.826 0.00 0.00 0.00 2.57
5995 10069 2.724977 TGATGTCTCGTTGTCCAGAC 57.275 50.000 0.00 0.00 39.70 3.51
6003 10077 1.483004 TCGTTGTCCAGACTGTTTGGA 59.517 47.619 15.44 15.44 42.30 3.53
6169 10246 8.557029 GTGGATAACCTGTATATTGTTTGCTAC 58.443 37.037 0.00 0.00 37.04 3.58
6174 10251 7.377766 ACCTGTATATTGTTTGCTACACTTG 57.622 36.000 0.00 0.00 36.21 3.16
6293 10370 1.617850 GGTGTGTCCATGATTTGGCAA 59.382 47.619 0.00 0.00 46.01 4.52
6294 10371 2.234414 GGTGTGTCCATGATTTGGCAAT 59.766 45.455 0.00 0.00 46.01 3.56
6295 10372 3.514645 GTGTGTCCATGATTTGGCAATC 58.485 45.455 0.00 1.75 46.01 2.67
6324 10422 5.252547 TCAGTGCACTAAAGGCATGATTAA 58.747 37.500 21.20 0.00 44.11 1.40
6385 10485 1.021968 GCGTGGAACTGAAACTTGGT 58.978 50.000 0.00 0.00 31.75 3.67
6387 10487 2.159296 GCGTGGAACTGAAACTTGGTTT 60.159 45.455 0.00 0.00 34.41 3.27
6409 10509 8.384607 GTTTCTGAGGAATCTGAAACTTTAGT 57.615 34.615 22.74 0.00 46.05 2.24
6414 10514 6.931281 TGAGGAATCTGAAACTTTAGTGACAG 59.069 38.462 9.03 9.03 35.17 3.51
6474 10574 5.468540 AAGCCTGAAGGAACAAATTAACC 57.531 39.130 0.00 0.00 37.39 2.85
6531 10633 5.572511 GTCATCTATTTCAAACGCATGCAAA 59.427 36.000 19.57 10.50 0.00 3.68
6538 10640 5.760193 TTCAAACGCATGCAAATGTATTC 57.240 34.783 19.57 0.00 0.00 1.75
6550 10652 5.007234 TGCAAATGTATTCGAAATACGGGAG 59.993 40.000 0.00 0.31 42.82 4.30
6564 10666 1.831736 ACGGGAGTTCCAACATCCTAG 59.168 52.381 0.00 0.00 43.33 3.02
6567 10669 2.576648 GGGAGTTCCAACATCCTAGGTT 59.423 50.000 9.08 0.00 37.91 3.50
6611 10713 1.971167 GACATGGCCGGCAAAGACA 60.971 57.895 30.85 17.34 0.00 3.41
6648 10750 1.207089 TCCTCCACAATGAAGTAGGCG 59.793 52.381 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.050350 TCGCTTCACCTCCTACGGG 61.050 63.158 0.00 0.00 0.00 5.28
35 36 1.139095 GTCGCTTCACCTCCTACGG 59.861 63.158 0.00 0.00 0.00 4.02
36 37 1.139095 GGTCGCTTCACCTCCTACG 59.861 63.158 0.00 0.00 33.08 3.51
38 39 2.307768 CATAGGTCGCTTCACCTCCTA 58.692 52.381 2.32 0.00 44.08 2.94
40 41 0.105039 CCATAGGTCGCTTCACCTCC 59.895 60.000 2.32 0.00 44.08 4.30
50 51 3.131709 AGCATTGATTCCCATAGGTCG 57.868 47.619 0.00 0.00 0.00 4.79
55 56 9.890629 GTATATGAGTAAGCATTGATTCCCATA 57.109 33.333 0.00 0.00 0.00 2.74
62 63 9.232473 TCTACGAGTATATGAGTAAGCATTGAT 57.768 33.333 0.00 0.00 0.00 2.57
63 64 8.617290 TCTACGAGTATATGAGTAAGCATTGA 57.383 34.615 0.00 0.00 0.00 2.57
64 65 8.722394 TCTCTACGAGTATATGAGTAAGCATTG 58.278 37.037 0.00 0.00 0.00 2.82
66 67 7.065324 GCTCTCTACGAGTATATGAGTAAGCAT 59.935 40.741 0.00 0.00 41.98 3.79
67 68 6.369340 GCTCTCTACGAGTATATGAGTAAGCA 59.631 42.308 0.00 0.00 41.98 3.91
69 70 7.892778 TGCTCTCTACGAGTATATGAGTAAG 57.107 40.000 0.00 0.00 41.98 2.34
70 71 8.672823 TTTGCTCTCTACGAGTATATGAGTAA 57.327 34.615 0.00 0.00 41.98 2.24
72 73 7.569639 TTTTGCTCTCTACGAGTATATGAGT 57.430 36.000 0.00 0.00 41.98 3.41
74 75 9.894783 GTTATTTTGCTCTCTACGAGTATATGA 57.105 33.333 0.00 0.00 41.98 2.15
75 76 8.841822 CGTTATTTTGCTCTCTACGAGTATATG 58.158 37.037 0.00 0.00 41.98 1.78
76 77 7.537991 GCGTTATTTTGCTCTCTACGAGTATAT 59.462 37.037 0.00 0.00 41.98 0.86
95 101 0.395173 AGGAAATGGCCGGCGTTATT 60.395 50.000 22.54 17.55 0.00 1.40
100 106 3.876198 CGAAGGAAATGGCCGGCG 61.876 66.667 22.54 0.00 0.00 6.46
116 122 5.155509 TCATGCGTCCTATCAAAATTTCG 57.844 39.130 0.00 0.00 0.00 3.46
117 123 7.195646 TCAATCATGCGTCCTATCAAAATTTC 58.804 34.615 0.00 0.00 0.00 2.17
125 131 2.476619 CGGTTCAATCATGCGTCCTATC 59.523 50.000 0.00 0.00 0.00 2.08
134 140 2.030007 AGCCAACAACGGTTCAATCATG 60.030 45.455 0.00 0.00 34.21 3.07
136 142 1.686355 AGCCAACAACGGTTCAATCA 58.314 45.000 0.00 0.00 34.21 2.57
140 146 0.736053 GTGAAGCCAACAACGGTTCA 59.264 50.000 0.00 0.00 34.21 3.18
141 147 1.021968 AGTGAAGCCAACAACGGTTC 58.978 50.000 0.00 0.00 34.21 3.62
145 151 0.041312 CCGAAGTGAAGCCAACAACG 60.041 55.000 0.00 0.00 0.00 4.10
158 165 0.037605 GACAATGTCCGGACCGAAGT 60.038 55.000 31.19 22.68 0.00 3.01
161 168 2.975536 GGACAATGTCCGGACCGA 59.024 61.111 31.19 14.90 43.14 4.69
173 180 0.035152 CCTGTGCATGCTAGGGACAA 60.035 55.000 25.11 0.26 36.14 3.18
187 194 1.338020 GCTCAAAAGTCCAACCCTGTG 59.662 52.381 0.00 0.00 0.00 3.66
188 195 1.215423 AGCTCAAAAGTCCAACCCTGT 59.785 47.619 0.00 0.00 0.00 4.00
189 196 1.610522 CAGCTCAAAAGTCCAACCCTG 59.389 52.381 0.00 0.00 0.00 4.45
263 295 9.768215 TCCCCAATCTTCTTAAAAATACTCAAT 57.232 29.630 0.00 0.00 0.00 2.57
270 302 7.730332 ACTCAGTTCCCCAATCTTCTTAAAAAT 59.270 33.333 0.00 0.00 0.00 1.82
276 308 4.731313 AACTCAGTTCCCCAATCTTCTT 57.269 40.909 0.00 0.00 0.00 2.52
277 309 4.731313 AAACTCAGTTCCCCAATCTTCT 57.269 40.909 0.00 0.00 0.00 2.85
278 310 5.791336 AAAAACTCAGTTCCCCAATCTTC 57.209 39.130 0.00 0.00 0.00 2.87
299 331 9.184523 ACATCGATTCCCTACATTTCAATTAAA 57.815 29.630 0.00 0.00 0.00 1.52
300 332 8.746052 ACATCGATTCCCTACATTTCAATTAA 57.254 30.769 0.00 0.00 0.00 1.40
301 333 8.746052 AACATCGATTCCCTACATTTCAATTA 57.254 30.769 0.00 0.00 0.00 1.40
302 334 7.645058 AACATCGATTCCCTACATTTCAATT 57.355 32.000 0.00 0.00 0.00 2.32
303 335 7.645058 AAACATCGATTCCCTACATTTCAAT 57.355 32.000 0.00 0.00 0.00 2.57
304 336 7.461182 AAAACATCGATTCCCTACATTTCAA 57.539 32.000 0.00 0.00 0.00 2.69
305 337 7.461182 AAAAACATCGATTCCCTACATTTCA 57.539 32.000 0.00 0.00 0.00 2.69
326 358 8.821894 CAATTCCCTACATTTCAAAACGAAAAA 58.178 29.630 0.00 0.00 46.48 1.94
327 359 8.198109 TCAATTCCCTACATTTCAAAACGAAAA 58.802 29.630 0.00 0.00 46.48 2.29
329 361 7.013846 ACTCAATTCCCTACATTTCAAAACGAA 59.986 33.333 0.00 0.00 0.00 3.85
330 362 6.488683 ACTCAATTCCCTACATTTCAAAACGA 59.511 34.615 0.00 0.00 0.00 3.85
331 363 6.677913 ACTCAATTCCCTACATTTCAAAACG 58.322 36.000 0.00 0.00 0.00 3.60
332 364 7.384932 CCAACTCAATTCCCTACATTTCAAAAC 59.615 37.037 0.00 0.00 0.00 2.43
333 365 7.070571 ACCAACTCAATTCCCTACATTTCAAAA 59.929 33.333 0.00 0.00 0.00 2.44
334 366 6.553100 ACCAACTCAATTCCCTACATTTCAAA 59.447 34.615 0.00 0.00 0.00 2.69
335 367 6.074648 ACCAACTCAATTCCCTACATTTCAA 58.925 36.000 0.00 0.00 0.00 2.69
336 368 5.640147 ACCAACTCAATTCCCTACATTTCA 58.360 37.500 0.00 0.00 0.00 2.69
337 369 6.350194 GGAACCAACTCAATTCCCTACATTTC 60.350 42.308 0.00 0.00 36.64 2.17
338 370 5.480422 GGAACCAACTCAATTCCCTACATTT 59.520 40.000 0.00 0.00 36.64 2.32
339 371 5.016831 GGAACCAACTCAATTCCCTACATT 58.983 41.667 0.00 0.00 36.64 2.71
340 372 4.292306 AGGAACCAACTCAATTCCCTACAT 59.708 41.667 0.00 0.00 42.53 2.29
341 373 3.655777 AGGAACCAACTCAATTCCCTACA 59.344 43.478 0.00 0.00 42.53 2.74
342 374 4.302559 AGGAACCAACTCAATTCCCTAC 57.697 45.455 0.00 0.00 42.53 3.18
343 375 5.333566 AAAGGAACCAACTCAATTCCCTA 57.666 39.130 0.00 0.00 42.53 3.53
344 376 3.903530 AAGGAACCAACTCAATTCCCT 57.096 42.857 0.00 0.00 42.53 4.20
345 377 4.955811 AAAAGGAACCAACTCAATTCCC 57.044 40.909 0.00 0.00 42.53 3.97
389 421 5.285651 CAACTCAATTTGTCGCCCTAAAAA 58.714 37.500 0.00 0.00 0.00 1.94
390 422 4.261825 CCAACTCAATTTGTCGCCCTAAAA 60.262 41.667 0.00 0.00 0.00 1.52
391 423 3.254657 CCAACTCAATTTGTCGCCCTAAA 59.745 43.478 0.00 0.00 0.00 1.85
392 424 2.817258 CCAACTCAATTTGTCGCCCTAA 59.183 45.455 0.00 0.00 0.00 2.69
393 425 2.224670 ACCAACTCAATTTGTCGCCCTA 60.225 45.455 0.00 0.00 0.00 3.53
394 426 1.247567 CCAACTCAATTTGTCGCCCT 58.752 50.000 0.00 0.00 0.00 5.19
395 427 0.958822 ACCAACTCAATTTGTCGCCC 59.041 50.000 0.00 0.00 0.00 6.13
396 428 2.607038 GGAACCAACTCAATTTGTCGCC 60.607 50.000 0.00 0.00 0.00 5.54
397 429 2.293399 AGGAACCAACTCAATTTGTCGC 59.707 45.455 0.00 0.00 0.00 5.19
398 430 4.755123 ACTAGGAACCAACTCAATTTGTCG 59.245 41.667 0.00 0.00 0.00 4.35
399 431 6.148976 GGTACTAGGAACCAACTCAATTTGTC 59.851 42.308 10.76 0.00 36.96 3.18
400 432 6.002082 GGTACTAGGAACCAACTCAATTTGT 58.998 40.000 10.76 0.00 36.96 2.83
401 433 6.238648 AGGTACTAGGAACCAACTCAATTTG 58.761 40.000 16.38 0.00 39.64 2.32
402 434 6.449830 AGGTACTAGGAACCAACTCAATTT 57.550 37.500 16.38 0.00 39.64 1.82
405 437 4.021719 CGAAGGTACTAGGAACCAACTCAA 60.022 45.833 16.38 0.00 38.49 3.02
437 469 3.605664 GGGTTGTGTGCCTGCCAC 61.606 66.667 4.45 4.45 44.90 5.01
442 474 0.681564 TTGAAACGGGTTGTGTGCCT 60.682 50.000 0.00 0.00 0.00 4.75
443 475 0.526739 GTTGAAACGGGTTGTGTGCC 60.527 55.000 0.00 0.00 0.00 5.01
444 476 0.526739 GGTTGAAACGGGTTGTGTGC 60.527 55.000 0.00 0.00 0.00 4.57
445 477 0.248296 CGGTTGAAACGGGTTGTGTG 60.248 55.000 0.00 0.00 0.00 3.82
473 505 0.889186 TTTGCCAGCGAAGAAGGTCC 60.889 55.000 0.00 0.00 0.00 4.46
474 506 0.519077 CTTTGCCAGCGAAGAAGGTC 59.481 55.000 13.42 0.00 39.23 3.85
475 507 0.108585 TCTTTGCCAGCGAAGAAGGT 59.891 50.000 17.99 0.00 41.85 3.50
477 509 0.164647 CGTCTTTGCCAGCGAAGAAG 59.835 55.000 21.11 19.13 45.03 2.85
478 510 0.249699 TCGTCTTTGCCAGCGAAGAA 60.250 50.000 21.11 6.86 45.03 2.52
480 512 0.095935 CATCGTCTTTGCCAGCGAAG 59.904 55.000 12.62 12.62 38.47 3.79
481 513 1.298157 CCATCGTCTTTGCCAGCGAA 61.298 55.000 0.00 0.00 35.56 4.70
482 514 1.741401 CCATCGTCTTTGCCAGCGA 60.741 57.895 0.00 0.00 36.11 4.93
483 515 2.787249 CCATCGTCTTTGCCAGCG 59.213 61.111 0.00 0.00 0.00 5.18
484 516 2.334946 TGCCATCGTCTTTGCCAGC 61.335 57.895 0.00 0.00 0.00 4.85
485 517 1.503542 GTGCCATCGTCTTTGCCAG 59.496 57.895 0.00 0.00 0.00 4.85
1118 2039 4.825679 GGGGAGGAGGTGGAGGGG 62.826 77.778 0.00 0.00 0.00 4.79
1231 2482 0.592637 TGCATCGCAAACCAGTCAAG 59.407 50.000 0.00 0.00 34.76 3.02
1354 2605 5.518487 CCTAAATCCACACACACAAAAACAC 59.482 40.000 0.00 0.00 0.00 3.32
1355 2606 5.419155 TCCTAAATCCACACACACAAAAACA 59.581 36.000 0.00 0.00 0.00 2.83
1356 2607 5.897050 TCCTAAATCCACACACACAAAAAC 58.103 37.500 0.00 0.00 0.00 2.43
1361 2612 2.708861 ACCTCCTAAATCCACACACACA 59.291 45.455 0.00 0.00 0.00 3.72
1362 2613 3.335579 GACCTCCTAAATCCACACACAC 58.664 50.000 0.00 0.00 0.00 3.82
1364 2615 2.028385 ACGACCTCCTAAATCCACACAC 60.028 50.000 0.00 0.00 0.00 3.82
1368 2619 3.889520 AAGACGACCTCCTAAATCCAC 57.110 47.619 0.00 0.00 0.00 4.02
1393 2644 1.595382 GCTCCACGGGATCGAATGG 60.595 63.158 0.00 2.15 40.11 3.16
1518 2782 6.802608 TCACGGAACCATACAAATCTACTAG 58.197 40.000 0.00 0.00 0.00 2.57
1577 2841 5.886960 ATCTTGACATAAAGGAGCACAAC 57.113 39.130 0.00 0.00 0.00 3.32
1579 2843 5.809001 AGAATCTTGACATAAAGGAGCACA 58.191 37.500 0.00 0.00 0.00 4.57
1585 2849 5.057149 CCGGGTAGAATCTTGACATAAAGG 58.943 45.833 0.00 0.00 0.00 3.11
1589 2853 6.494666 AATTCCGGGTAGAATCTTGACATA 57.505 37.500 0.00 0.00 35.40 2.29
1590 2854 5.373812 AATTCCGGGTAGAATCTTGACAT 57.626 39.130 0.00 0.00 35.40 3.06
1594 2858 5.123227 TGCTTAATTCCGGGTAGAATCTTG 58.877 41.667 0.00 0.00 35.40 3.02
1620 2884 2.109126 GCCGTTCCACTCAGCATCC 61.109 63.158 0.00 0.00 0.00 3.51
1623 2887 1.830587 ATCAGCCGTTCCACTCAGCA 61.831 55.000 0.00 0.00 0.00 4.41
1627 2891 1.086634 GCAGATCAGCCGTTCCACTC 61.087 60.000 0.00 0.00 0.00 3.51
1678 2943 4.778842 ATCTCAACAAAGCTAATACGCG 57.221 40.909 3.53 3.53 34.40 6.01
1680 2945 5.747197 ACGGTATCTCAACAAAGCTAATACG 59.253 40.000 0.00 0.00 0.00 3.06
1683 2956 6.407202 AGAACGGTATCTCAACAAAGCTAAT 58.593 36.000 0.00 0.00 0.00 1.73
1717 2990 1.652843 TCCCCCTAGTGCTAAGGGTTA 59.347 52.381 14.92 3.09 41.19 2.85
1718 2991 0.420272 TCCCCCTAGTGCTAAGGGTT 59.580 55.000 14.92 0.00 41.19 4.11
1786 3064 6.072728 TGCGCTGTCAAAATACTTTGTTATCT 60.073 34.615 9.73 0.00 42.26 1.98
1918 3196 4.261741 GGGCGATCAATTTGCTTATGATGT 60.262 41.667 0.00 0.00 34.10 3.06
1921 3199 2.622942 GGGGCGATCAATTTGCTTATGA 59.377 45.455 0.00 0.00 34.85 2.15
2018 3298 7.821846 ACTCCTATCTCAAAAGCTTAGACAAAG 59.178 37.037 0.00 0.00 38.32 2.77
2164 3445 5.769662 TGATGCACACTTTCCTCAAGTAAAT 59.230 36.000 0.00 0.00 44.60 1.40
2165 3446 5.129634 TGATGCACACTTTCCTCAAGTAAA 58.870 37.500 0.00 0.00 44.60 2.01
2166 3447 4.713553 TGATGCACACTTTCCTCAAGTAA 58.286 39.130 0.00 0.00 44.60 2.24
2183 3464 2.094258 CCACGCGGTATATTCATGATGC 59.906 50.000 12.47 0.00 0.00 3.91
2189 3470 1.069358 TCATGCCACGCGGTATATTCA 59.931 47.619 12.47 0.00 35.02 2.57
2254 3535 1.066430 ACATGCACGTCTTCGGGTATT 60.066 47.619 0.00 0.00 42.60 1.89
2257 3538 1.667830 CACATGCACGTCTTCGGGT 60.668 57.895 0.00 0.00 43.08 5.28
2261 3542 2.537625 GAGATAGCACATGCACGTCTTC 59.462 50.000 6.64 0.00 45.16 2.87
2328 3609 9.268282 ACACTCTTATATTTCTTTACAGAGGGA 57.732 33.333 2.59 0.00 34.50 4.20
2329 3610 9.892130 AACACTCTTATATTTCTTTACAGAGGG 57.108 33.333 0.00 0.00 36.55 4.30
2362 3643 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
2363 3644 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
2375 3656 9.314321 CCTTCAGAAAATATAAGAGCGTTTAGA 57.686 33.333 0.00 0.00 0.00 2.10
2376 3657 9.314321 TCCTTCAGAAAATATAAGAGCGTTTAG 57.686 33.333 0.00 0.00 0.00 1.85
2377 3658 9.314321 CTCCTTCAGAAAATATAAGAGCGTTTA 57.686 33.333 0.00 0.00 0.00 2.01
2378 3659 7.281100 CCTCCTTCAGAAAATATAAGAGCGTTT 59.719 37.037 0.00 0.00 0.00 3.60
2379 3660 6.763610 CCTCCTTCAGAAAATATAAGAGCGTT 59.236 38.462 0.00 0.00 0.00 4.84
2380 3661 6.284459 CCTCCTTCAGAAAATATAAGAGCGT 58.716 40.000 0.00 0.00 0.00 5.07
2381 3662 5.698545 CCCTCCTTCAGAAAATATAAGAGCG 59.301 44.000 0.00 0.00 0.00 5.03
2382 3663 6.831976 TCCCTCCTTCAGAAAATATAAGAGC 58.168 40.000 0.00 0.00 0.00 4.09
2383 3664 8.028652 ACTCCCTCCTTCAGAAAATATAAGAG 57.971 38.462 0.00 0.00 0.00 2.85
2384 3665 7.996758 ACTCCCTCCTTCAGAAAATATAAGA 57.003 36.000 0.00 0.00 0.00 2.10
2385 3666 8.929487 ACTACTCCCTCCTTCAGAAAATATAAG 58.071 37.037 0.00 0.00 0.00 1.73
2386 3667 8.855804 ACTACTCCCTCCTTCAGAAAATATAA 57.144 34.615 0.00 0.00 0.00 0.98
2387 3668 8.855804 AACTACTCCCTCCTTCAGAAAATATA 57.144 34.615 0.00 0.00 0.00 0.86
2388 3669 7.757242 AACTACTCCCTCCTTCAGAAAATAT 57.243 36.000 0.00 0.00 0.00 1.28
2389 3670 7.569599 AAACTACTCCCTCCTTCAGAAAATA 57.430 36.000 0.00 0.00 0.00 1.40
2390 3671 6.455690 AAACTACTCCCTCCTTCAGAAAAT 57.544 37.500 0.00 0.00 0.00 1.82
2391 3672 5.906772 AAACTACTCCCTCCTTCAGAAAA 57.093 39.130 0.00 0.00 0.00 2.29
2392 3673 6.082707 AGTAAACTACTCCCTCCTTCAGAAA 58.917 40.000 0.00 0.00 32.47 2.52
2393 3674 5.652324 AGTAAACTACTCCCTCCTTCAGAA 58.348 41.667 0.00 0.00 32.47 3.02
2394 3675 5.272405 AGTAAACTACTCCCTCCTTCAGA 57.728 43.478 0.00 0.00 32.47 3.27
2395 3676 7.778853 TGTATAGTAAACTACTCCCTCCTTCAG 59.221 40.741 0.00 0.00 40.14 3.02
2396 3677 7.645942 TGTATAGTAAACTACTCCCTCCTTCA 58.354 38.462 0.00 0.00 40.14 3.02
2397 3678 8.709272 ATGTATAGTAAACTACTCCCTCCTTC 57.291 38.462 0.00 0.00 40.14 3.46
2398 3679 9.810870 CTATGTATAGTAAACTACTCCCTCCTT 57.189 37.037 0.00 0.00 40.14 3.36
2399 3680 9.180282 TCTATGTATAGTAAACTACTCCCTCCT 57.820 37.037 0.00 0.00 40.14 3.69
2400 3681 9.230122 GTCTATGTATAGTAAACTACTCCCTCC 57.770 40.741 0.00 0.00 40.14 4.30
2401 3682 8.934825 CGTCTATGTATAGTAAACTACTCCCTC 58.065 40.741 0.00 0.00 40.14 4.30
2402 3683 8.654997 TCGTCTATGTATAGTAAACTACTCCCT 58.345 37.037 0.00 0.00 40.14 4.20
2403 3684 8.839310 TCGTCTATGTATAGTAAACTACTCCC 57.161 38.462 0.00 0.00 40.14 4.30
2405 3686 9.810231 GCTTCGTCTATGTATAGTAAACTACTC 57.190 37.037 0.00 0.00 40.14 2.59
2406 3687 9.334947 TGCTTCGTCTATGTATAGTAAACTACT 57.665 33.333 0.00 0.00 42.68 2.57
2407 3688 9.941664 TTGCTTCGTCTATGTATAGTAAACTAC 57.058 33.333 0.00 0.00 0.00 2.73
2426 3707 9.965824 AATATTTGGGTAGAATAAATTGCTTCG 57.034 29.630 0.00 0.00 0.00 3.79
2483 3764 4.074970 TGAGAGGCCAAAGAAGAATTGAC 58.925 43.478 5.01 0.00 0.00 3.18
2486 3767 4.042684 AGAGTGAGAGGCCAAAGAAGAATT 59.957 41.667 5.01 0.00 0.00 2.17
2490 3771 3.072944 CAAGAGTGAGAGGCCAAAGAAG 58.927 50.000 5.01 0.00 0.00 2.85
2591 4030 0.826715 ACCGAGATAGCACATGCACT 59.173 50.000 6.64 2.51 45.16 4.40
2610 4049 5.667466 ACAAGAGGTAGACGTCAAAGAAAA 58.333 37.500 19.50 0.00 33.52 2.29
2625 4064 9.236006 TCGTATCTAAAGTAAACTACAAGAGGT 57.764 33.333 0.00 0.00 0.00 3.85
2626 4065 9.719279 CTCGTATCTAAAGTAAACTACAAGAGG 57.281 37.037 0.00 0.00 0.00 3.69
2715 4155 1.230324 ACAGCTCGTCCAAAGAAAGC 58.770 50.000 0.00 0.00 34.66 3.51
2735 4175 8.848182 AGGTTCCACGTAAAACAAAACATATAA 58.152 29.630 12.61 0.00 0.00 0.98
2766 4206 6.378280 CCAATAAAGAAAGGACTGCAACCTAT 59.622 38.462 11.72 0.00 36.67 2.57
2830 4271 9.591792 CATCAATTACTGAGTCAGATGTAAAGA 57.408 33.333 26.86 16.01 37.52 2.52
3195 5159 1.644786 GATGCCGGGTTGCAGTACAC 61.645 60.000 2.18 0.00 45.93 2.90
3209 5173 4.323553 ACTATACACTCCGAAAGATGCC 57.676 45.455 0.00 0.00 0.00 4.40
3394 5358 2.494870 GCTCCCAAATTCAAGCTGACAT 59.505 45.455 0.00 0.00 0.00 3.06
3527 5491 0.393132 GTAAGTGCCTCCTGCCCTTC 60.393 60.000 0.00 0.00 38.67 3.46
3532 5496 0.107945 CCTGAGTAAGTGCCTCCTGC 60.108 60.000 0.00 0.00 41.77 4.85
3722 5686 2.428171 GTGCTGGTAAGATACGGTACCA 59.572 50.000 13.54 2.76 45.94 3.25
3723 5687 2.428171 TGTGCTGGTAAGATACGGTACC 59.572 50.000 0.16 0.16 40.28 3.34
3737 5701 2.174363 TTCAGTCTGATGTGTGCTGG 57.826 50.000 2.68 0.00 0.00 4.85
3740 5704 1.195448 CCGTTTCAGTCTGATGTGTGC 59.805 52.381 2.68 0.00 0.00 4.57
3804 5775 5.297029 AGTCAAAGTTCAAGTTTAGACAGGC 59.703 40.000 16.23 0.00 0.00 4.85
3815 5786 9.956720 ATGAGAAATTTACAGTCAAAGTTCAAG 57.043 29.630 10.27 0.00 42.18 3.02
3867 5838 7.063426 CGTGTTGAGAAGCACTTTCTTATGATA 59.937 37.037 0.00 0.00 46.12 2.15
3892 5863 8.420374 ACACAAAATAGACACCACTATATTCG 57.580 34.615 0.00 0.00 33.42 3.34
3900 5871 5.662211 ACGTTACACAAAATAGACACCAC 57.338 39.130 0.00 0.00 0.00 4.16
3939 5940 5.590530 TGTGCTTTGACCAACAATTAGTT 57.409 34.783 0.00 0.00 42.42 2.24
4024 6025 4.945246 ACACGTATCAGAACCATATCCAC 58.055 43.478 0.00 0.00 0.00 4.02
4028 6029 6.042777 CACAAGACACGTATCAGAACCATAT 58.957 40.000 0.00 0.00 0.00 1.78
4036 6037 4.668576 AAATGCACAAGACACGTATCAG 57.331 40.909 0.00 0.00 0.00 2.90
4145 8105 7.602644 TCTTGTTGATACTGAACGAAATAGCTT 59.397 33.333 0.00 0.00 0.00 3.74
4146 8106 7.097192 TCTTGTTGATACTGAACGAAATAGCT 58.903 34.615 0.00 0.00 0.00 3.32
4504 8464 8.723365 TCACCCACATACCTTAGAATTGATAAT 58.277 33.333 0.00 0.00 0.00 1.28
4638 8601 7.703621 CAGTATTTCATGCCATAGAAGTTTTGG 59.296 37.037 0.00 0.00 0.00 3.28
4725 8688 6.854778 ACTAAACTTCGGTAGCTTCTCTAAG 58.145 40.000 0.00 0.00 35.68 2.18
4754 8717 5.265191 ACTCCTCAGACAAATACAGCTCTA 58.735 41.667 0.00 0.00 0.00 2.43
4926 8889 1.071605 ACAAGAAAGACAGATCGCGC 58.928 50.000 0.00 0.00 0.00 6.86
4929 8892 4.752101 AGTTTCCACAAGAAAGACAGATCG 59.248 41.667 0.00 0.00 45.11 3.69
5150 9150 7.025963 GCATGAAACCAAATAGAGAAGACTTG 58.974 38.462 0.00 0.00 0.00 3.16
5219 9223 8.616076 CCACATATAAACTGTCCAAATCTTCTC 58.384 37.037 0.00 0.00 0.00 2.87
5264 9268 4.403432 ACCCATTCCATGCAAGTAATTGAG 59.597 41.667 7.18 0.00 0.00 3.02
5301 9305 4.142138 TGACACTTGCCCGTAACAAAAATT 60.142 37.500 0.00 0.00 0.00 1.82
5373 9381 4.862641 AAATGTCCAGTGCCCTATAACT 57.137 40.909 0.00 0.00 0.00 2.24
5378 9386 4.780815 CAGAATAAATGTCCAGTGCCCTA 58.219 43.478 0.00 0.00 0.00 3.53
5379 9387 3.624777 CAGAATAAATGTCCAGTGCCCT 58.375 45.455 0.00 0.00 0.00 5.19
5382 9390 3.441572 ACAGCAGAATAAATGTCCAGTGC 59.558 43.478 0.00 0.00 0.00 4.40
5390 9398 4.983538 TGCAACACAACAGCAGAATAAATG 59.016 37.500 0.00 0.00 33.75 2.32
5478 9502 5.326200 TCAAGAGGGTAGACGAGATTTTC 57.674 43.478 0.00 0.00 0.00 2.29
5508 9532 0.962489 CCAAGTCCAGACAGAGTCGT 59.038 55.000 0.00 0.00 37.67 4.34
5714 9754 0.927537 TGTCGCAAACTGTTGTCGAG 59.072 50.000 14.71 1.28 40.98 4.04
5759 9800 1.134580 CAGGCATCCAGTAGACAGTGG 60.135 57.143 0.00 0.00 45.49 4.00
5761 9802 1.944177 ACAGGCATCCAGTAGACAGT 58.056 50.000 0.00 0.00 0.00 3.55
5792 9851 1.089920 GTAGCCAATGACAGTGCAGG 58.910 55.000 0.00 0.00 0.00 4.85
5816 9875 1.597195 TGCTGCGTCTAGTTTGTTGTG 59.403 47.619 0.00 0.00 0.00 3.33
5828 9887 0.880278 TCCTGTTCAACTGCTGCGTC 60.880 55.000 0.00 0.00 0.00 5.19
5995 10069 3.484229 GCATCGACGATCTTTCCAAACAG 60.484 47.826 7.54 0.00 0.00 3.16
6003 10077 4.631377 TGAATCTTTGCATCGACGATCTTT 59.369 37.500 7.54 0.00 0.00 2.52
6169 10246 1.136147 GCATTCCAGCGAGCAAGTG 59.864 57.895 0.00 0.00 0.00 3.16
6293 10370 4.818546 GCCTTTAGTGCACTGATACATGAT 59.181 41.667 29.57 0.97 0.00 2.45
6294 10371 4.191544 GCCTTTAGTGCACTGATACATGA 58.808 43.478 29.57 3.27 0.00 3.07
6295 10372 3.940852 TGCCTTTAGTGCACTGATACATG 59.059 43.478 29.57 11.62 32.85 3.21
6324 10422 0.921896 AGCATGGCCATTAGAGGTGT 59.078 50.000 17.92 0.00 0.00 4.16
6385 10485 8.210946 TCACTAAAGTTTCAGATTCCTCAGAAA 58.789 33.333 0.00 0.00 35.33 2.52
6387 10487 7.155328 GTCACTAAAGTTTCAGATTCCTCAGA 58.845 38.462 0.00 0.00 0.00 3.27
6388 10488 6.931281 TGTCACTAAAGTTTCAGATTCCTCAG 59.069 38.462 0.00 0.00 0.00 3.35
6389 10489 6.826668 TGTCACTAAAGTTTCAGATTCCTCA 58.173 36.000 0.00 0.00 0.00 3.86
6406 10506 0.038251 CTGGCTCGTTGCTGTCACTA 60.038 55.000 3.58 0.00 42.39 2.74
6407 10507 1.301244 CTGGCTCGTTGCTGTCACT 60.301 57.895 3.58 0.00 42.39 3.41
6408 10508 2.959357 GCTGGCTCGTTGCTGTCAC 61.959 63.158 3.58 0.00 42.39 3.67
6409 10509 2.666190 GCTGGCTCGTTGCTGTCA 60.666 61.111 3.58 0.00 42.39 3.58
6414 10514 1.084370 ATTACTCGCTGGCTCGTTGC 61.084 55.000 0.33 0.00 41.94 4.17
6430 10530 4.991153 AGTTGATCTGCTCGAGTGATTA 57.009 40.909 15.13 11.76 0.00 1.75
6531 10633 5.163385 TGGAACTCCCGTATTTCGAATACAT 60.163 40.000 0.00 0.00 42.86 2.29
6538 10640 2.690786 TGTTGGAACTCCCGTATTTCG 58.309 47.619 0.00 0.00 37.93 3.46
6550 10652 3.073274 AGCAACCTAGGATGTTGGAAC 57.927 47.619 17.98 0.00 42.58 3.62
6564 10666 3.187700 CCTCGACACAATAGTAGCAACC 58.812 50.000 0.00 0.00 0.00 3.77
6567 10669 2.730382 TCCCTCGACACAATAGTAGCA 58.270 47.619 0.00 0.00 0.00 3.49
6627 10729 2.354704 CGCCTACTTCATTGTGGAGGAA 60.355 50.000 12.62 0.00 0.00 3.36
6630 10732 2.672961 TCGCCTACTTCATTGTGGAG 57.327 50.000 0.00 0.00 0.00 3.86
6648 10750 2.293627 CGTCGCCGATCATCCGTTC 61.294 63.158 0.00 0.00 35.63 3.95
6662 10764 4.245054 CACCAGTGGACTTCGTCG 57.755 61.111 18.40 0.00 32.65 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.