Multiple sequence alignment - TraesCS2B01G119800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G119800 chr2B 100.000 3667 0 0 1 3667 87519290 87515624 0.000000e+00 6772.0
1 TraesCS2B01G119800 chr2B 93.156 1125 67 4 877 1998 87530641 87529524 0.000000e+00 1642.0
2 TraesCS2B01G119800 chr2B 88.987 1017 70 19 2079 3064 87529525 87528520 0.000000e+00 1219.0
3 TraesCS2B01G119800 chr2B 95.866 629 23 2 2897 3523 87416221 87415594 0.000000e+00 1014.0
4 TraesCS2B01G119800 chr2B 92.437 476 33 1 1523 1998 87423459 87422987 0.000000e+00 676.0
5 TraesCS2B01G119800 chr2B 89.366 536 34 12 2089 2604 87422972 87422440 0.000000e+00 652.0
6 TraesCS2B01G119800 chr2B 85.069 576 72 8 200 763 134253140 134253713 3.180000e-160 575.0
7 TraesCS2B01G119800 chr2B 92.568 296 12 2 2603 2897 87422358 87422072 2.040000e-112 416.0
8 TraesCS2B01G119800 chr2B 88.701 354 18 11 1189 1539 87423809 87423475 2.640000e-111 412.0
9 TraesCS2B01G119800 chr2B 92.580 283 18 2 915 1197 87424127 87423848 1.590000e-108 403.0
10 TraesCS2B01G119800 chr2B 98.413 189 3 0 1 189 659874179 659873991 2.110000e-87 333.0
11 TraesCS2B01G119800 chr2B 82.456 285 34 7 918 1190 87776057 87775777 6.120000e-58 235.0
12 TraesCS2B01G119800 chr2B 91.743 109 6 2 3521 3629 87526948 87526843 8.200000e-32 148.0
13 TraesCS2B01G119800 chr2B 90.654 107 10 0 3521 3627 87698273 87698167 3.820000e-30 143.0
14 TraesCS2B01G119800 chr2A 93.867 2038 90 16 1188 3197 56107579 56105549 0.000000e+00 3038.0
15 TraesCS2B01G119800 chr2A 93.557 1583 71 12 1631 3197 55972761 55971194 0.000000e+00 2329.0
16 TraesCS2B01G119800 chr2A 94.242 330 19 0 3194 3523 55971145 55970816 4.230000e-139 505.0
17 TraesCS2B01G119800 chr2A 98.942 189 2 0 1 189 165379661 165379473 4.540000e-89 339.0
18 TraesCS2B01G119800 chr2A 94.030 201 12 0 997 1197 56107817 56107617 4.600000e-79 305.0
19 TraesCS2B01G119800 chr2A 95.161 124 5 1 3194 3316 56105500 56105377 1.040000e-45 195.0
20 TraesCS2B01G119800 chr2A 74.436 532 75 29 2231 2742 55971328 55970838 4.870000e-39 172.0
21 TraesCS2B01G119800 chr2A 90.217 92 7 2 1997 2086 240481652 240481743 6.430000e-23 119.0
22 TraesCS2B01G119800 chr2A 83.962 106 14 1 2434 2536 56105510 56105405 8.380000e-17 99.0
23 TraesCS2B01G119800 chr2A 96.491 57 2 0 3422 3478 56105380 56105324 1.080000e-15 95.3
24 TraesCS2B01G119800 chr2D 90.184 1141 70 17 2079 3194 58639932 58641055 0.000000e+00 1448.0
25 TraesCS2B01G119800 chr2D 90.044 1145 58 18 2079 3197 55248810 55247696 0.000000e+00 1432.0
26 TraesCS2B01G119800 chr2D 89.938 1133 72 11 2089 3197 55246604 55245490 0.000000e+00 1423.0
27 TraesCS2B01G119800 chr2D 91.739 811 56 6 1188 1998 55249608 55248809 0.000000e+00 1116.0
28 TraesCS2B01G119800 chr2D 91.615 811 58 5 1188 1998 58639133 58639933 0.000000e+00 1112.0
29 TraesCS2B01G119800 chr2D 90.356 477 36 3 1522 1998 55247086 55246620 5.200000e-173 617.0
30 TraesCS2B01G119800 chr2D 96.657 329 11 0 3195 3523 55242356 55242028 6.920000e-152 547.0
31 TraesCS2B01G119800 chr2D 93.030 330 23 0 3194 3523 58641107 58641436 1.980000e-132 483.0
32 TraesCS2B01G119800 chr2D 95.880 267 11 0 3197 3463 55247646 55247380 2.020000e-117 433.0
33 TraesCS2B01G119800 chr2D 94.444 270 15 0 3194 3463 55245441 55245172 2.040000e-112 416.0
34 TraesCS2B01G119800 chr2D 94.340 265 12 2 933 1197 55249907 55249646 1.590000e-108 403.0
35 TraesCS2B01G119800 chr2D 94.975 199 9 1 2999 3197 55242601 55242404 9.890000e-81 311.0
36 TraesCS2B01G119800 chr2D 96.133 181 6 1 3448 3627 55244504 55244324 9.960000e-76 294.0
37 TraesCS2B01G119800 chr2D 93.035 201 14 0 997 1197 58638895 58639095 9.960000e-76 294.0
38 TraesCS2B01G119800 chr6A 88.348 575 55 8 200 763 56068695 56069268 0.000000e+00 680.0
39 TraesCS2B01G119800 chr6A 85.069 576 72 8 200 763 591940890 591940317 3.180000e-160 575.0
40 TraesCS2B01G119800 chr7B 85.417 576 70 8 200 763 380072728 380073301 1.470000e-163 586.0
41 TraesCS2B01G119800 chr7B 85.069 576 72 8 200 763 648274092 648273519 3.180000e-160 575.0
42 TraesCS2B01G119800 chr7B 89.583 96 8 2 1996 2089 139983486 139983391 1.790000e-23 121.0
43 TraesCS2B01G119800 chr6B 85.069 576 72 8 200 763 61211604 61212177 3.180000e-160 575.0
44 TraesCS2B01G119800 chr3B 85.069 576 72 8 200 763 463483584 463484157 3.180000e-160 575.0
45 TraesCS2B01G119800 chr3B 98.942 189 2 0 1 189 756717558 756717370 4.540000e-89 339.0
46 TraesCS2B01G119800 chr3B 98.942 189 2 0 1 189 756828552 756828364 4.540000e-89 339.0
47 TraesCS2B01G119800 chr3B 98.413 189 3 0 1 189 756748766 756748578 2.110000e-87 333.0
48 TraesCS2B01G119800 chr3B 97.354 189 5 0 1 189 1459648 1459836 4.570000e-84 322.0
49 TraesCS2B01G119800 chr3B 88.350 103 10 2 1994 2095 478996837 478996938 4.970000e-24 122.0
50 TraesCS2B01G119800 chrUn 84.896 576 73 8 200 763 136394754 136395327 1.480000e-158 569.0
51 TraesCS2B01G119800 chr6D 84.870 575 75 7 200 763 454064726 454064153 1.480000e-158 569.0
52 TraesCS2B01G119800 chr7A 98.942 189 2 0 1 189 78332955 78333143 4.540000e-89 339.0
53 TraesCS2B01G119800 chr7A 98.413 189 3 0 1 189 681568169 681567981 2.110000e-87 333.0
54 TraesCS2B01G119800 chr3D 98.942 189 2 0 1 189 302651586 302651774 4.540000e-89 339.0
55 TraesCS2B01G119800 chr3D 85.841 113 14 2 1983 2094 424006084 424005973 6.430000e-23 119.0
56 TraesCS2B01G119800 chr5D 91.304 92 7 1 1997 2087 56915763 56915672 1.380000e-24 124.0
57 TraesCS2B01G119800 chr5A 91.111 90 6 2 1994 2081 670269926 670270015 1.790000e-23 121.0
58 TraesCS2B01G119800 chr5B 86.538 104 11 3 1994 2095 256921341 256921443 1.080000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G119800 chr2B 87515624 87519290 3666 True 6772.00 6772 100.000000 1 3667 1 chr2B.!!$R2 3666
1 TraesCS2B01G119800 chr2B 87415594 87416221 627 True 1014.00 1014 95.866000 2897 3523 1 chr2B.!!$R1 626
2 TraesCS2B01G119800 chr2B 87526843 87530641 3798 True 1003.00 1642 91.295333 877 3629 3 chr2B.!!$R7 2752
3 TraesCS2B01G119800 chr2B 134253140 134253713 573 False 575.00 575 85.069000 200 763 1 chr2B.!!$F1 563
4 TraesCS2B01G119800 chr2B 87422072 87424127 2055 True 511.80 676 91.130400 915 2897 5 chr2B.!!$R6 1982
5 TraesCS2B01G119800 chr2A 55970816 55972761 1945 True 1002.00 2329 87.411667 1631 3523 3 chr2A.!!$R2 1892
6 TraesCS2B01G119800 chr2A 56105324 56107817 2493 True 746.46 3038 92.702200 997 3478 5 chr2A.!!$R3 2481
7 TraesCS2B01G119800 chr2D 58638895 58641436 2541 False 834.25 1448 91.966000 997 3523 4 chr2D.!!$F1 2526
8 TraesCS2B01G119800 chr2D 55242028 55249907 7879 True 699.20 1432 93.450600 933 3627 10 chr2D.!!$R1 2694
9 TraesCS2B01G119800 chr6A 56068695 56069268 573 False 680.00 680 88.348000 200 763 1 chr6A.!!$F1 563
10 TraesCS2B01G119800 chr6A 591940317 591940890 573 True 575.00 575 85.069000 200 763 1 chr6A.!!$R1 563
11 TraesCS2B01G119800 chr7B 380072728 380073301 573 False 586.00 586 85.417000 200 763 1 chr7B.!!$F1 563
12 TraesCS2B01G119800 chr7B 648273519 648274092 573 True 575.00 575 85.069000 200 763 1 chr7B.!!$R2 563
13 TraesCS2B01G119800 chr6B 61211604 61212177 573 False 575.00 575 85.069000 200 763 1 chr6B.!!$F1 563
14 TraesCS2B01G119800 chr3B 463483584 463484157 573 False 575.00 575 85.069000 200 763 1 chr3B.!!$F2 563
15 TraesCS2B01G119800 chrUn 136394754 136395327 573 False 569.00 569 84.896000 200 763 1 chrUn.!!$F1 563
16 TraesCS2B01G119800 chr6D 454064153 454064726 573 True 569.00 569 84.870000 200 763 1 chr6D.!!$R1 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
798 810 0.250124 ATGCACGTCACCGGAGAAAA 60.250 50.0 9.46 0.0 38.78 2.29 F
1968 4270 0.244994 CTCTTCCAGCGCTACTGTGT 59.755 55.0 10.99 0.0 45.68 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2065 4367 1.053424 AAAACTACTCCTCCGTGCCA 58.947 50.0 0.00 0.0 0.0 4.92 R
3644 9872 0.667993 CTTCAAACTTGGCGGCTTCA 59.332 50.0 11.43 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.274601 CCCGATGGGCCAAGTAAAA 57.725 52.632 11.89 0.00 35.35 1.52
20 21 0.815095 CCCGATGGGCCAAGTAAAAC 59.185 55.000 11.89 0.00 35.35 2.43
21 22 1.615919 CCCGATGGGCCAAGTAAAACT 60.616 52.381 11.89 0.00 35.35 2.66
22 23 2.356330 CCCGATGGGCCAAGTAAAACTA 60.356 50.000 11.89 0.00 35.35 2.24
23 24 3.551846 CCGATGGGCCAAGTAAAACTAT 58.448 45.455 11.89 0.00 0.00 2.12
24 25 4.445162 CCCGATGGGCCAAGTAAAACTATA 60.445 45.833 11.89 0.00 35.35 1.31
25 26 5.313712 CCGATGGGCCAAGTAAAACTATAT 58.686 41.667 11.89 0.00 0.00 0.86
26 27 5.181245 CCGATGGGCCAAGTAAAACTATATG 59.819 44.000 11.89 0.00 0.00 1.78
27 28 5.334879 CGATGGGCCAAGTAAAACTATATGC 60.335 44.000 11.89 0.00 0.00 3.14
28 29 4.861196 TGGGCCAAGTAAAACTATATGCA 58.139 39.130 2.13 0.00 0.00 3.96
29 30 4.642885 TGGGCCAAGTAAAACTATATGCAC 59.357 41.667 2.13 0.00 0.00 4.57
30 31 4.037565 GGGCCAAGTAAAACTATATGCACC 59.962 45.833 4.39 0.00 0.00 5.01
31 32 4.261031 GGCCAAGTAAAACTATATGCACCG 60.261 45.833 0.00 0.00 0.00 4.94
32 33 4.261031 GCCAAGTAAAACTATATGCACCGG 60.261 45.833 0.00 0.00 0.00 5.28
33 34 5.120399 CCAAGTAAAACTATATGCACCGGA 58.880 41.667 9.46 0.00 0.00 5.14
34 35 5.763204 CCAAGTAAAACTATATGCACCGGAT 59.237 40.000 9.46 0.00 0.00 4.18
35 36 6.262273 CCAAGTAAAACTATATGCACCGGATT 59.738 38.462 9.46 0.00 0.00 3.01
36 37 7.201785 CCAAGTAAAACTATATGCACCGGATTT 60.202 37.037 9.46 0.00 0.00 2.17
37 38 7.259290 AGTAAAACTATATGCACCGGATTTG 57.741 36.000 9.46 0.00 0.00 2.32
38 39 6.826741 AGTAAAACTATATGCACCGGATTTGT 59.173 34.615 9.46 0.00 0.00 2.83
39 40 6.524101 AAAACTATATGCACCGGATTTGTT 57.476 33.333 9.46 0.00 0.00 2.83
40 41 6.524101 AAACTATATGCACCGGATTTGTTT 57.476 33.333 9.46 5.49 0.00 2.83
41 42 5.499139 ACTATATGCACCGGATTTGTTTG 57.501 39.130 9.46 0.00 0.00 2.93
42 43 4.947388 ACTATATGCACCGGATTTGTTTGT 59.053 37.500 9.46 0.00 0.00 2.83
43 44 4.799564 ATATGCACCGGATTTGTTTGTT 57.200 36.364 9.46 0.00 0.00 2.83
44 45 2.500509 TGCACCGGATTTGTTTGTTC 57.499 45.000 9.46 0.00 0.00 3.18
45 46 1.751351 TGCACCGGATTTGTTTGTTCA 59.249 42.857 9.46 0.00 0.00 3.18
46 47 2.166459 TGCACCGGATTTGTTTGTTCAA 59.834 40.909 9.46 0.00 0.00 2.69
47 48 2.538037 GCACCGGATTTGTTTGTTCAAC 59.462 45.455 9.46 0.00 35.71 3.18
48 49 3.775202 CACCGGATTTGTTTGTTCAACA 58.225 40.909 9.46 0.00 44.11 3.33
60 61 6.482835 TGTTTGTTCAACAACATTCTAGACG 58.517 36.000 1.28 0.00 42.76 4.18
61 62 6.092944 TGTTTGTTCAACAACATTCTAGACGT 59.907 34.615 1.28 0.00 42.76 4.34
62 63 6.671614 TTGTTCAACAACATTCTAGACGTT 57.328 33.333 0.00 0.00 42.28 3.99
63 64 6.281848 TGTTCAACAACATTCTAGACGTTC 57.718 37.500 4.14 0.00 37.61 3.95
64 65 5.235616 TGTTCAACAACATTCTAGACGTTCC 59.764 40.000 4.14 0.00 37.61 3.62
65 66 5.209818 TCAACAACATTCTAGACGTTCCT 57.790 39.130 4.14 0.00 0.00 3.36
66 67 6.335471 TCAACAACATTCTAGACGTTCCTA 57.665 37.500 4.14 0.00 0.00 2.94
67 68 6.751157 TCAACAACATTCTAGACGTTCCTAA 58.249 36.000 4.14 0.00 0.00 2.69
68 69 7.383687 TCAACAACATTCTAGACGTTCCTAAT 58.616 34.615 4.14 0.00 0.00 1.73
69 70 7.876068 TCAACAACATTCTAGACGTTCCTAATT 59.124 33.333 4.14 0.00 0.00 1.40
70 71 8.504005 CAACAACATTCTAGACGTTCCTAATTT 58.496 33.333 4.14 0.00 0.00 1.82
71 72 8.252964 ACAACATTCTAGACGTTCCTAATTTC 57.747 34.615 4.14 0.00 0.00 2.17
72 73 8.095169 ACAACATTCTAGACGTTCCTAATTTCT 58.905 33.333 4.14 0.00 0.00 2.52
73 74 9.582431 CAACATTCTAGACGTTCCTAATTTCTA 57.418 33.333 4.14 0.00 0.00 2.10
74 75 9.804758 AACATTCTAGACGTTCCTAATTTCTAG 57.195 33.333 0.00 2.84 37.98 2.43
75 76 7.921745 ACATTCTAGACGTTCCTAATTTCTAGC 59.078 37.037 0.00 0.00 37.00 3.42
76 77 7.400599 TTCTAGACGTTCCTAATTTCTAGCA 57.599 36.000 0.00 0.00 37.00 3.49
77 78 7.400599 TCTAGACGTTCCTAATTTCTAGCAA 57.599 36.000 0.00 0.00 37.00 3.91
78 79 8.008513 TCTAGACGTTCCTAATTTCTAGCAAT 57.991 34.615 0.00 0.00 37.00 3.56
79 80 8.136165 TCTAGACGTTCCTAATTTCTAGCAATC 58.864 37.037 0.00 0.00 37.00 2.67
80 81 6.879400 AGACGTTCCTAATTTCTAGCAATCT 58.121 36.000 0.00 0.00 0.00 2.40
81 82 6.758886 AGACGTTCCTAATTTCTAGCAATCTG 59.241 38.462 0.00 0.00 0.00 2.90
82 83 5.817816 ACGTTCCTAATTTCTAGCAATCTGG 59.182 40.000 0.00 0.00 0.00 3.86
83 84 5.817816 CGTTCCTAATTTCTAGCAATCTGGT 59.182 40.000 6.35 0.00 0.00 4.00
84 85 6.238211 CGTTCCTAATTTCTAGCAATCTGGTG 60.238 42.308 6.35 0.00 0.00 4.17
85 86 6.313519 TCCTAATTTCTAGCAATCTGGTGT 57.686 37.500 6.35 0.00 0.00 4.16
86 87 6.115446 TCCTAATTTCTAGCAATCTGGTGTG 58.885 40.000 6.35 0.00 0.00 3.82
87 88 4.708726 AATTTCTAGCAATCTGGTGTGC 57.291 40.909 0.00 0.00 41.22 4.57
88 89 2.857186 TTCTAGCAATCTGGTGTGCA 57.143 45.000 0.00 0.00 43.42 4.57
89 90 3.354948 TTCTAGCAATCTGGTGTGCAT 57.645 42.857 0.00 0.00 43.42 3.96
90 91 2.635714 TCTAGCAATCTGGTGTGCATG 58.364 47.619 0.00 0.00 43.42 4.06
91 92 1.065102 CTAGCAATCTGGTGTGCATGC 59.935 52.381 11.82 11.82 43.42 4.06
92 93 1.153706 GCAATCTGGTGTGCATGCC 60.154 57.895 16.68 7.25 40.58 4.40
93 94 1.138036 CAATCTGGTGTGCATGCCG 59.862 57.895 16.68 0.00 0.00 5.69
94 95 1.002257 AATCTGGTGTGCATGCCGA 60.002 52.632 16.68 0.00 0.00 5.54
95 96 1.028330 AATCTGGTGTGCATGCCGAG 61.028 55.000 16.68 6.67 0.00 4.63
96 97 3.807538 CTGGTGTGCATGCCGAGC 61.808 66.667 16.68 11.60 0.00 5.03
97 98 4.639906 TGGTGTGCATGCCGAGCA 62.640 61.111 16.68 14.20 44.86 4.26
108 109 2.596904 TGCCGAGCATTCCTTACTAC 57.403 50.000 0.00 0.00 31.71 2.73
109 110 2.108168 TGCCGAGCATTCCTTACTACT 58.892 47.619 0.00 0.00 31.71 2.57
110 111 3.293337 TGCCGAGCATTCCTTACTACTA 58.707 45.455 0.00 0.00 31.71 1.82
111 112 3.702548 TGCCGAGCATTCCTTACTACTAA 59.297 43.478 0.00 0.00 31.71 2.24
112 113 4.344102 TGCCGAGCATTCCTTACTACTAAT 59.656 41.667 0.00 0.00 31.71 1.73
113 114 5.163343 TGCCGAGCATTCCTTACTACTAATT 60.163 40.000 0.00 0.00 31.71 1.40
114 115 5.758784 GCCGAGCATTCCTTACTACTAATTT 59.241 40.000 0.00 0.00 0.00 1.82
115 116 6.292919 GCCGAGCATTCCTTACTACTAATTTG 60.293 42.308 0.00 0.00 0.00 2.32
116 117 6.292919 CCGAGCATTCCTTACTACTAATTTGC 60.293 42.308 0.00 0.00 0.00 3.68
117 118 6.257849 CGAGCATTCCTTACTACTAATTTGCA 59.742 38.462 0.00 0.00 0.00 4.08
118 119 7.041780 CGAGCATTCCTTACTACTAATTTGCAT 60.042 37.037 0.00 0.00 0.00 3.96
119 120 7.934457 AGCATTCCTTACTACTAATTTGCATG 58.066 34.615 0.00 0.00 0.00 4.06
120 121 7.775093 AGCATTCCTTACTACTAATTTGCATGA 59.225 33.333 0.00 0.00 0.00 3.07
121 122 8.405531 GCATTCCTTACTACTAATTTGCATGAA 58.594 33.333 0.00 0.00 0.00 2.57
124 125 8.450578 TCCTTACTACTAATTTGCATGAATGG 57.549 34.615 0.00 0.00 0.00 3.16
125 126 8.052748 TCCTTACTACTAATTTGCATGAATGGT 58.947 33.333 0.00 0.00 0.00 3.55
126 127 8.686334 CCTTACTACTAATTTGCATGAATGGTT 58.314 33.333 0.00 0.00 0.00 3.67
129 130 7.693952 ACTACTAATTTGCATGAATGGTTACG 58.306 34.615 0.00 0.00 0.00 3.18
130 131 5.890334 ACTAATTTGCATGAATGGTTACGG 58.110 37.500 0.00 0.00 0.00 4.02
131 132 4.799564 AATTTGCATGAATGGTTACGGT 57.200 36.364 0.00 0.00 0.00 4.83
132 133 4.799564 ATTTGCATGAATGGTTACGGTT 57.200 36.364 0.00 0.00 0.00 4.44
133 134 3.567576 TTGCATGAATGGTTACGGTTG 57.432 42.857 0.00 0.00 0.00 3.77
134 135 1.815613 TGCATGAATGGTTACGGTTGG 59.184 47.619 0.00 0.00 0.00 3.77
135 136 1.469079 GCATGAATGGTTACGGTTGGC 60.469 52.381 0.00 0.00 0.00 4.52
136 137 1.815613 CATGAATGGTTACGGTTGGCA 59.184 47.619 0.00 0.00 0.00 4.92
137 138 1.240256 TGAATGGTTACGGTTGGCAC 58.760 50.000 0.00 0.00 0.00 5.01
138 139 1.202830 TGAATGGTTACGGTTGGCACT 60.203 47.619 0.00 0.00 0.00 4.40
139 140 2.038689 TGAATGGTTACGGTTGGCACTA 59.961 45.455 0.00 0.00 0.00 2.74
140 141 3.275999 GAATGGTTACGGTTGGCACTAT 58.724 45.455 0.00 0.00 0.00 2.12
141 142 2.863132 TGGTTACGGTTGGCACTATT 57.137 45.000 0.00 0.00 0.00 1.73
142 143 2.428491 TGGTTACGGTTGGCACTATTG 58.572 47.619 0.00 0.00 0.00 1.90
143 144 1.741145 GGTTACGGTTGGCACTATTGG 59.259 52.381 0.00 0.00 0.00 3.16
144 145 2.616001 GGTTACGGTTGGCACTATTGGA 60.616 50.000 0.00 0.00 0.00 3.53
145 146 3.275999 GTTACGGTTGGCACTATTGGAT 58.724 45.455 0.00 0.00 0.00 3.41
146 147 4.444536 GTTACGGTTGGCACTATTGGATA 58.555 43.478 0.00 0.00 0.00 2.59
147 148 3.857157 ACGGTTGGCACTATTGGATAT 57.143 42.857 0.00 0.00 0.00 1.63
148 149 3.740115 ACGGTTGGCACTATTGGATATC 58.260 45.455 0.00 0.00 0.00 1.63
149 150 3.074412 CGGTTGGCACTATTGGATATCC 58.926 50.000 15.39 15.39 0.00 2.59
150 151 3.421844 GGTTGGCACTATTGGATATCCC 58.578 50.000 19.34 1.37 34.29 3.85
151 152 3.181434 GGTTGGCACTATTGGATATCCCA 60.181 47.826 19.34 8.80 44.93 4.37
152 153 4.509122 GGTTGGCACTATTGGATATCCCAT 60.509 45.833 19.34 15.78 46.10 4.00
153 154 4.574674 TGGCACTATTGGATATCCCATC 57.425 45.455 19.34 1.87 46.10 3.51
154 155 4.178339 TGGCACTATTGGATATCCCATCT 58.822 43.478 19.34 3.77 46.10 2.90
155 156 5.349690 TGGCACTATTGGATATCCCATCTA 58.650 41.667 19.34 4.70 46.10 1.98
156 157 5.790096 TGGCACTATTGGATATCCCATCTAA 59.210 40.000 19.34 6.61 46.10 2.10
157 158 6.116126 GGCACTATTGGATATCCCATCTAAC 58.884 44.000 19.34 4.26 46.10 2.34
158 159 6.116126 GCACTATTGGATATCCCATCTAACC 58.884 44.000 19.34 0.00 46.10 2.85
159 160 6.069963 GCACTATTGGATATCCCATCTAACCT 60.070 42.308 19.34 0.00 46.10 3.50
160 161 7.529560 GCACTATTGGATATCCCATCTAACCTT 60.530 40.741 19.34 0.00 46.10 3.50
161 162 9.046846 CACTATTGGATATCCCATCTAACCTTA 57.953 37.037 19.34 0.00 46.10 2.69
162 163 9.805204 ACTATTGGATATCCCATCTAACCTTAT 57.195 33.333 19.34 0.00 46.10 1.73
164 165 7.510675 TTGGATATCCCATCTAACCTTATCC 57.489 40.000 19.34 0.00 46.10 2.59
165 166 6.580167 TGGATATCCCATCTAACCTTATCCA 58.420 40.000 19.34 4.98 40.82 3.41
166 167 7.028760 TGGATATCCCATCTAACCTTATCCAA 58.971 38.462 19.34 0.00 40.17 3.53
167 168 7.519355 TGGATATCCCATCTAACCTTATCCAAA 59.481 37.037 19.34 0.00 40.17 3.28
168 169 8.390921 GGATATCCCATCTAACCTTATCCAAAA 58.609 37.037 11.02 0.00 35.67 2.44
169 170 9.454859 GATATCCCATCTAACCTTATCCAAAAG 57.545 37.037 0.00 0.00 0.00 2.27
182 183 2.899303 CCAAAAGGTGGGGAGTACAT 57.101 50.000 0.00 0.00 44.64 2.29
184 185 3.617284 CCAAAAGGTGGGGAGTACATAC 58.383 50.000 0.00 0.00 44.64 2.39
185 186 3.265995 CCAAAAGGTGGGGAGTACATACT 59.734 47.826 0.00 0.00 44.64 2.12
186 187 4.625564 CCAAAAGGTGGGGAGTACATACTC 60.626 50.000 10.11 10.11 44.64 2.59
187 188 6.812037 CCAAAAGGTGGGGAGTACATACTCT 61.812 48.000 16.61 0.00 44.88 3.24
188 189 8.221058 CCAAAAGGTGGGGAGTACATACTCTT 62.221 46.154 16.61 2.08 44.88 2.85
189 190 8.948255 CCAAAAGGTGGGGAGTACATACTCTTA 61.948 44.444 16.61 3.55 44.88 2.10
330 331 3.777910 GGCGGGGGCGACTTCTTA 61.778 66.667 0.00 0.00 0.00 2.10
333 334 0.956902 GCGGGGGCGACTTCTTAAAA 60.957 55.000 0.00 0.00 0.00 1.52
379 380 1.488705 CCCTGTCCTGGTGGTGCTTA 61.489 60.000 0.00 0.00 34.23 3.09
397 398 3.244353 GCTTATAGCATCTTCAGAGGGCA 60.244 47.826 6.16 0.00 41.89 5.36
438 439 1.033574 GATCTCGTGGGATTCGGTCT 58.966 55.000 0.00 0.00 0.00 3.85
441 444 0.458543 CTCGTGGGATTCGGTCTGTG 60.459 60.000 0.00 0.00 0.00 3.66
497 500 4.758165 TGTTCGTCTATGTCAGTGTGTCTA 59.242 41.667 0.00 0.00 0.00 2.59
505 508 6.890268 TCTATGTCAGTGTGTCTACAGGTTAT 59.110 38.462 0.00 0.00 37.52 1.89
521 525 9.179909 CTACAGGTTATATCCTTCGATCTATGT 57.820 37.037 0.00 0.00 35.37 2.29
537 541 5.258456 TCTATGTTTCTCTTTATCGGCGT 57.742 39.130 6.85 0.00 0.00 5.68
539 543 3.306917 TGTTTCTCTTTATCGGCGTCA 57.693 42.857 6.85 0.00 0.00 4.35
540 544 3.655486 TGTTTCTCTTTATCGGCGTCAA 58.345 40.909 6.85 0.00 0.00 3.18
549 553 0.881118 ATCGGCGTCAATTGCTGTTT 59.119 45.000 6.85 0.00 39.73 2.83
579 583 2.959465 GTCCTATTGGGCCTTAGCAT 57.041 50.000 4.53 0.00 42.56 3.79
582 586 2.988859 TCCTATTGGGCCTTAGCATGAT 59.011 45.455 4.53 0.00 42.56 2.45
584 588 2.761786 ATTGGGCCTTAGCATGATGT 57.238 45.000 4.53 0.00 42.56 3.06
592 596 2.487934 CTTAGCATGATGTCTTCCCGG 58.512 52.381 0.00 0.00 0.00 5.73
626 631 2.188469 GTTTGCCCGGCTCCGATA 59.812 61.111 11.61 0.00 42.83 2.92
750 762 9.554395 TTCTTTGTACTGACAGTTGATGAATAA 57.446 29.630 14.50 0.00 36.76 1.40
758 770 8.859090 ACTGACAGTTGATGAATAAATTGGAAA 58.141 29.630 1.07 0.00 0.00 3.13
785 797 9.662545 TTTTGTGAAATATATATGACATGCACG 57.337 29.630 0.00 0.00 0.00 5.34
786 798 7.961325 TGTGAAATATATATGACATGCACGT 57.039 32.000 0.00 0.00 0.00 4.49
787 799 8.017587 TGTGAAATATATATGACATGCACGTC 57.982 34.615 5.84 5.84 36.40 4.34
792 804 2.356913 TGACATGCACGTCACCGG 60.357 61.111 12.31 0.00 40.94 5.28
793 805 2.048597 GACATGCACGTCACCGGA 60.049 61.111 9.46 0.00 38.78 5.14
794 806 2.048222 ACATGCACGTCACCGGAG 60.048 61.111 9.46 0.00 38.78 4.63
795 807 2.261361 CATGCACGTCACCGGAGA 59.739 61.111 9.46 1.33 38.78 3.71
796 808 1.374125 CATGCACGTCACCGGAGAA 60.374 57.895 9.46 0.00 38.78 2.87
797 809 0.948623 CATGCACGTCACCGGAGAAA 60.949 55.000 9.46 0.00 38.78 2.52
798 810 0.250124 ATGCACGTCACCGGAGAAAA 60.250 50.000 9.46 0.00 38.78 2.29
799 811 0.462225 TGCACGTCACCGGAGAAAAA 60.462 50.000 9.46 0.00 38.78 1.94
821 833 8.915871 AAAAAGCATATGACATGTACAATCAC 57.084 30.769 13.71 3.86 0.00 3.06
822 834 6.624352 AAGCATATGACATGTACAATCACC 57.376 37.500 13.71 5.30 0.00 4.02
823 835 5.933617 AGCATATGACATGTACAATCACCT 58.066 37.500 13.71 4.25 0.00 4.00
824 836 6.359804 AGCATATGACATGTACAATCACCTT 58.640 36.000 13.71 3.66 0.00 3.50
825 837 6.484643 AGCATATGACATGTACAATCACCTTC 59.515 38.462 13.71 6.13 0.00 3.46
826 838 6.293626 GCATATGACATGTACAATCACCTTCC 60.294 42.308 13.71 1.65 0.00 3.46
827 839 4.908601 TGACATGTACAATCACCTTCCT 57.091 40.909 0.00 0.00 0.00 3.36
828 840 5.241403 TGACATGTACAATCACCTTCCTT 57.759 39.130 0.00 0.00 0.00 3.36
829 841 6.367374 TGACATGTACAATCACCTTCCTTA 57.633 37.500 0.00 0.00 0.00 2.69
830 842 6.957631 TGACATGTACAATCACCTTCCTTAT 58.042 36.000 0.00 0.00 0.00 1.73
831 843 8.084985 TGACATGTACAATCACCTTCCTTATA 57.915 34.615 0.00 0.00 0.00 0.98
832 844 8.544622 TGACATGTACAATCACCTTCCTTATAA 58.455 33.333 0.00 0.00 0.00 0.98
833 845 9.561069 GACATGTACAATCACCTTCCTTATAAT 57.439 33.333 0.00 0.00 0.00 1.28
872 884 8.966069 ATCACCTTCCTATTAAAGTTAAGCTC 57.034 34.615 0.00 0.00 0.00 4.09
873 885 8.147244 TCACCTTCCTATTAAAGTTAAGCTCT 57.853 34.615 0.00 0.00 0.00 4.09
874 886 8.041323 TCACCTTCCTATTAAAGTTAAGCTCTG 58.959 37.037 0.00 0.00 0.00 3.35
875 887 8.041323 CACCTTCCTATTAAAGTTAAGCTCTGA 58.959 37.037 0.00 0.00 0.00 3.27
912 924 2.879103 AATTGTTCCCATCCGTGTCT 57.121 45.000 0.00 0.00 0.00 3.41
967 983 0.883833 TAACCGTGACGAGGAGGTTC 59.116 55.000 6.54 0.00 44.85 3.62
968 984 0.826672 AACCGTGACGAGGAGGTTCT 60.827 55.000 6.54 0.00 42.74 3.01
969 985 1.242665 ACCGTGACGAGGAGGTTCTC 61.243 60.000 6.54 0.00 32.17 2.87
970 986 0.961358 CCGTGACGAGGAGGTTCTCT 60.961 60.000 6.54 0.00 0.00 3.10
977 993 3.784429 AGGAGGTTCTCTGCTCTGT 57.216 52.632 0.00 0.00 40.29 3.41
1323 1386 1.758862 GGAATTCCTGGGCTTTGGATG 59.241 52.381 17.73 0.00 31.76 3.51
1443 1520 3.825014 CAGAGATTGGGCCCTATTCATTG 59.175 47.826 25.70 13.76 0.00 2.82
1968 4270 0.244994 CTCTTCCAGCGCTACTGTGT 59.755 55.000 10.99 0.00 45.68 3.72
2005 4307 8.602472 ATTATATGAACTCATCTACTCCCTCC 57.398 38.462 0.00 0.00 37.76 4.30
2006 4308 2.656002 TGAACTCATCTACTCCCTCCG 58.344 52.381 0.00 0.00 0.00 4.63
2007 4309 2.025226 TGAACTCATCTACTCCCTCCGT 60.025 50.000 0.00 0.00 0.00 4.69
2008 4310 2.351706 ACTCATCTACTCCCTCCGTC 57.648 55.000 0.00 0.00 0.00 4.79
2009 4311 1.847737 ACTCATCTACTCCCTCCGTCT 59.152 52.381 0.00 0.00 0.00 4.18
2010 4312 2.158726 ACTCATCTACTCCCTCCGTCTC 60.159 54.545 0.00 0.00 0.00 3.36
2011 4313 1.844497 TCATCTACTCCCTCCGTCTCA 59.156 52.381 0.00 0.00 0.00 3.27
2012 4314 2.443632 TCATCTACTCCCTCCGTCTCAT 59.556 50.000 0.00 0.00 0.00 2.90
2013 4315 3.651423 TCATCTACTCCCTCCGTCTCATA 59.349 47.826 0.00 0.00 0.00 2.15
2014 4316 4.104261 TCATCTACTCCCTCCGTCTCATAA 59.896 45.833 0.00 0.00 0.00 1.90
2015 4317 4.726035 TCTACTCCCTCCGTCTCATAAT 57.274 45.455 0.00 0.00 0.00 1.28
2016 4318 4.399219 TCTACTCCCTCCGTCTCATAATG 58.601 47.826 0.00 0.00 0.00 1.90
2017 4319 3.033659 ACTCCCTCCGTCTCATAATGT 57.966 47.619 0.00 0.00 0.00 2.71
2018 4320 4.180377 ACTCCCTCCGTCTCATAATGTA 57.820 45.455 0.00 0.00 0.00 2.29
2019 4321 4.543689 ACTCCCTCCGTCTCATAATGTAA 58.456 43.478 0.00 0.00 0.00 2.41
2020 4322 4.585162 ACTCCCTCCGTCTCATAATGTAAG 59.415 45.833 0.00 0.00 0.00 2.34
2021 4323 4.800023 TCCCTCCGTCTCATAATGTAAGA 58.200 43.478 0.00 0.00 0.00 2.10
2022 4324 4.583489 TCCCTCCGTCTCATAATGTAAGAC 59.417 45.833 0.00 0.00 36.82 3.01
2032 4334 9.474249 GTCTCATAATGTAAGACGCTTTTTAAC 57.526 33.333 0.00 0.00 31.01 2.01
2033 4335 9.210329 TCTCATAATGTAAGACGCTTTTTAACA 57.790 29.630 0.00 0.00 0.00 2.41
2034 4336 9.988350 CTCATAATGTAAGACGCTTTTTAACAT 57.012 29.630 0.00 0.25 0.00 2.71
2044 4346 9.607285 AAGACGCTTTTTAACATTATTGTAGTG 57.393 29.630 0.00 0.00 34.06 2.74
2045 4347 8.780249 AGACGCTTTTTAACATTATTGTAGTGT 58.220 29.630 4.26 4.26 34.49 3.55
2046 4348 9.389570 GACGCTTTTTAACATTATTGTAGTGTT 57.610 29.630 5.58 3.85 40.88 3.32
2073 4375 3.897141 TGTCTTACATTATGGCACGGA 57.103 42.857 0.00 0.00 0.00 4.69
2074 4376 3.792401 TGTCTTACATTATGGCACGGAG 58.208 45.455 0.00 0.00 0.00 4.63
2075 4377 3.131396 GTCTTACATTATGGCACGGAGG 58.869 50.000 0.00 0.00 0.00 4.30
2076 4378 3.035363 TCTTACATTATGGCACGGAGGA 58.965 45.455 0.00 0.00 0.00 3.71
2077 4379 3.069586 TCTTACATTATGGCACGGAGGAG 59.930 47.826 0.00 0.00 0.00 3.69
2291 4686 5.815581 AGGGCATAGAAGTTATTTGTGTGA 58.184 37.500 0.00 0.00 0.00 3.58
2399 4794 8.573885 CATGAGAAACCATACATTGCTCATATT 58.426 33.333 7.70 0.00 38.99 1.28
2466 4867 3.514309 TCCTTTGCTCCTACTACCTTCAC 59.486 47.826 0.00 0.00 0.00 3.18
2486 4887 7.607991 CCTTCACTACTTCATGATAAAACCTGT 59.392 37.037 0.00 0.00 0.00 4.00
2507 4908 8.211629 ACCTGTACTTAGACTCAAAATTTGACT 58.788 33.333 4.03 4.37 35.46 3.41
2558 4959 9.400638 CGTGTAAAACAGAGGCATTTTAAATAA 57.599 29.630 0.00 0.00 33.31 1.40
2679 5196 6.940867 ACCACTAAACTGAGTTTATTTCTCCC 59.059 38.462 17.21 0.00 37.37 4.30
2784 5305 9.617523 ATTCATTAGATTGACACATGTGTATCA 57.382 29.630 30.03 23.37 45.05 2.15
2822 5343 2.597217 CAAGTGCCGCTTTGGGGA 60.597 61.111 4.81 0.00 37.91 4.81
2885 5410 5.095490 GGCAAAATTATGAACTCGTCTTGG 58.905 41.667 0.00 0.00 0.00 3.61
3014 5545 6.944234 AGTGCAGCCCTTAAATAATTACTC 57.056 37.500 0.00 0.00 0.00 2.59
3041 5573 8.662141 GGCAAAACTTATGAACGTCTTCTATTA 58.338 33.333 0.00 0.00 0.00 0.98
3219 5991 9.838339 ATCCTTTGTTCCTACTACATTCATTAG 57.162 33.333 0.00 0.00 0.00 1.73
3259 6032 5.718146 TGCACAAAGACTCAAAATTTGACA 58.282 33.333 4.03 0.00 37.37 3.58
3322 6095 6.412943 CAGACAGTCGCATTTTAAATATGCTG 59.587 38.462 21.90 17.98 44.78 4.41
3337 6189 1.891919 GCTGACTGCCACGGAAACA 60.892 57.895 0.00 0.00 35.15 2.83
3434 9370 5.241662 AGCAGATCACTAAACCAGAGTTTC 58.758 41.667 0.00 0.00 42.67 2.78
3532 9760 2.027192 TGGAAAGCTAGGACATGACACC 60.027 50.000 0.00 0.00 0.00 4.16
3598 9826 7.593825 AGAACTTGTTATGCATGTTTACTTCC 58.406 34.615 10.16 0.00 42.94 3.46
3599 9827 6.892658 ACTTGTTATGCATGTTTACTTCCA 57.107 33.333 10.16 0.00 32.37 3.53
3602 9830 4.704540 TGTTATGCATGTTTACTTCCAGGG 59.295 41.667 10.16 0.00 0.00 4.45
3614 9842 0.850100 TTCCAGGGGAGCTTTGTGAA 59.150 50.000 0.00 0.00 31.21 3.18
3615 9843 0.110486 TCCAGGGGAGCTTTGTGAAC 59.890 55.000 0.00 0.00 0.00 3.18
3617 9845 1.073199 AGGGGAGCTTTGTGAACGG 59.927 57.895 0.00 0.00 0.00 4.44
3618 9846 1.228154 GGGGAGCTTTGTGAACGGT 60.228 57.895 0.00 0.00 0.00 4.83
3619 9847 0.035739 GGGGAGCTTTGTGAACGGTA 59.964 55.000 0.00 0.00 0.00 4.02
3620 9848 1.154197 GGGAGCTTTGTGAACGGTAC 58.846 55.000 0.00 0.00 0.00 3.34
3622 9850 1.798813 GGAGCTTTGTGAACGGTACAG 59.201 52.381 0.00 0.00 0.00 2.74
3624 9852 0.237498 GCTTTGTGAACGGTACAGCC 59.763 55.000 0.00 0.00 0.00 4.85
3625 9853 1.878953 CTTTGTGAACGGTACAGCCT 58.121 50.000 0.00 0.00 34.25 4.58
3626 9854 1.798813 CTTTGTGAACGGTACAGCCTC 59.201 52.381 0.00 0.00 34.25 4.70
3628 9856 0.753867 TGTGAACGGTACAGCCTCAA 59.246 50.000 0.00 0.00 34.25 3.02
3629 9857 1.270094 TGTGAACGGTACAGCCTCAAG 60.270 52.381 0.00 0.00 34.25 3.02
3630 9858 1.000506 GTGAACGGTACAGCCTCAAGA 59.999 52.381 0.00 0.00 34.25 3.02
3631 9859 1.899814 TGAACGGTACAGCCTCAAGAT 59.100 47.619 0.00 0.00 34.25 2.40
3632 9860 2.301870 TGAACGGTACAGCCTCAAGATT 59.698 45.455 0.00 0.00 34.25 2.40
3633 9861 2.386661 ACGGTACAGCCTCAAGATTG 57.613 50.000 0.00 0.00 34.25 2.67
3634 9862 1.066143 ACGGTACAGCCTCAAGATTGG 60.066 52.381 0.00 0.00 34.25 3.16
3639 9867 2.751436 GCCTCAAGATTGGCGCCA 60.751 61.111 29.03 29.03 39.71 5.69
3640 9868 2.342650 GCCTCAAGATTGGCGCCAA 61.343 57.895 41.54 41.54 39.71 4.52
3641 9869 1.508088 CCTCAAGATTGGCGCCAAC 59.492 57.895 42.32 32.27 38.88 3.77
3642 9870 0.962356 CCTCAAGATTGGCGCCAACT 60.962 55.000 42.32 33.75 38.88 3.16
3643 9871 1.678728 CCTCAAGATTGGCGCCAACTA 60.679 52.381 42.32 23.68 38.88 2.24
3644 9872 2.292267 CTCAAGATTGGCGCCAACTAT 58.708 47.619 42.32 28.20 38.88 2.12
3645 9873 2.016318 TCAAGATTGGCGCCAACTATG 58.984 47.619 42.32 34.82 38.88 2.23
3646 9874 2.016318 CAAGATTGGCGCCAACTATGA 58.984 47.619 42.32 21.99 38.88 2.15
3647 9875 2.418368 AGATTGGCGCCAACTATGAA 57.582 45.000 42.32 21.16 38.88 2.57
3648 9876 2.292267 AGATTGGCGCCAACTATGAAG 58.708 47.619 42.32 0.00 38.88 3.02
3649 9877 0.740737 ATTGGCGCCAACTATGAAGC 59.259 50.000 42.32 4.23 38.88 3.86
3650 9878 1.312371 TTGGCGCCAACTATGAAGCC 61.312 55.000 37.30 0.42 44.13 4.35
3651 9879 2.709475 GCGCCAACTATGAAGCCG 59.291 61.111 0.00 0.00 0.00 5.52
3652 9880 2.709475 CGCCAACTATGAAGCCGC 59.291 61.111 0.00 0.00 0.00 6.53
3653 9881 2.823829 CGCCAACTATGAAGCCGCC 61.824 63.158 0.00 0.00 0.00 6.13
3654 9882 1.748879 GCCAACTATGAAGCCGCCA 60.749 57.895 0.00 0.00 0.00 5.69
3655 9883 1.312371 GCCAACTATGAAGCCGCCAA 61.312 55.000 0.00 0.00 0.00 4.52
3656 9884 0.734889 CCAACTATGAAGCCGCCAAG 59.265 55.000 0.00 0.00 0.00 3.61
3657 9885 1.453155 CAACTATGAAGCCGCCAAGT 58.547 50.000 0.00 0.00 0.00 3.16
3658 9886 1.812571 CAACTATGAAGCCGCCAAGTT 59.187 47.619 0.00 0.00 0.00 2.66
3659 9887 2.200373 ACTATGAAGCCGCCAAGTTT 57.800 45.000 0.00 0.00 0.00 2.66
3660 9888 1.812571 ACTATGAAGCCGCCAAGTTTG 59.187 47.619 0.00 0.00 0.00 2.93
3661 9889 2.083774 CTATGAAGCCGCCAAGTTTGA 58.916 47.619 0.00 0.00 0.00 2.69
3662 9890 1.327303 ATGAAGCCGCCAAGTTTGAA 58.673 45.000 0.00 0.00 0.00 2.69
3663 9891 0.667993 TGAAGCCGCCAAGTTTGAAG 59.332 50.000 0.00 0.00 0.00 3.02
3664 9892 0.951558 GAAGCCGCCAAGTTTGAAGA 59.048 50.000 0.00 0.00 0.00 2.87
3665 9893 1.541588 GAAGCCGCCAAGTTTGAAGAT 59.458 47.619 0.00 0.00 0.00 2.40
3666 9894 1.620822 AGCCGCCAAGTTTGAAGATT 58.379 45.000 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.406361 TTTTACTTGGCCCATCGGGT 59.594 50.000 0.00 0.00 46.51 5.28
2 3 1.834188 AGTTTTACTTGGCCCATCGG 58.166 50.000 0.00 0.00 0.00 4.18
3 4 5.334879 GCATATAGTTTTACTTGGCCCATCG 60.335 44.000 0.00 0.00 0.00 3.84
4 5 5.534654 TGCATATAGTTTTACTTGGCCCATC 59.465 40.000 0.00 0.00 0.00 3.51
5 6 5.301805 GTGCATATAGTTTTACTTGGCCCAT 59.698 40.000 0.00 0.00 0.00 4.00
6 7 4.642885 GTGCATATAGTTTTACTTGGCCCA 59.357 41.667 0.00 0.00 0.00 5.36
7 8 4.037565 GGTGCATATAGTTTTACTTGGCCC 59.962 45.833 0.00 0.00 0.00 5.80
8 9 4.261031 CGGTGCATATAGTTTTACTTGGCC 60.261 45.833 0.00 0.00 0.00 5.36
9 10 4.261031 CCGGTGCATATAGTTTTACTTGGC 60.261 45.833 0.00 0.00 0.00 4.52
10 11 5.120399 TCCGGTGCATATAGTTTTACTTGG 58.880 41.667 0.00 0.00 0.00 3.61
11 12 6.861065 ATCCGGTGCATATAGTTTTACTTG 57.139 37.500 0.00 0.00 0.00 3.16
12 13 7.338449 ACAAATCCGGTGCATATAGTTTTACTT 59.662 33.333 0.00 0.00 0.00 2.24
13 14 6.826741 ACAAATCCGGTGCATATAGTTTTACT 59.173 34.615 0.00 0.00 0.00 2.24
14 15 7.023197 ACAAATCCGGTGCATATAGTTTTAC 57.977 36.000 0.00 0.00 0.00 2.01
15 16 7.633193 AACAAATCCGGTGCATATAGTTTTA 57.367 32.000 0.00 0.00 0.00 1.52
16 17 6.524101 AACAAATCCGGTGCATATAGTTTT 57.476 33.333 0.00 0.00 0.00 2.43
17 18 6.071616 ACAAACAAATCCGGTGCATATAGTTT 60.072 34.615 0.00 0.00 0.00 2.66
18 19 5.417580 ACAAACAAATCCGGTGCATATAGTT 59.582 36.000 0.00 0.00 0.00 2.24
19 20 4.947388 ACAAACAAATCCGGTGCATATAGT 59.053 37.500 0.00 0.00 0.00 2.12
20 21 5.499139 ACAAACAAATCCGGTGCATATAG 57.501 39.130 0.00 0.00 0.00 1.31
21 22 5.416013 TGAACAAACAAATCCGGTGCATATA 59.584 36.000 0.00 0.00 0.00 0.86
22 23 4.219507 TGAACAAACAAATCCGGTGCATAT 59.780 37.500 0.00 0.00 0.00 1.78
23 24 3.570125 TGAACAAACAAATCCGGTGCATA 59.430 39.130 0.00 0.00 0.00 3.14
24 25 2.363680 TGAACAAACAAATCCGGTGCAT 59.636 40.909 0.00 0.00 0.00 3.96
25 26 1.751351 TGAACAAACAAATCCGGTGCA 59.249 42.857 0.00 0.00 0.00 4.57
26 27 2.500509 TGAACAAACAAATCCGGTGC 57.499 45.000 0.00 0.00 0.00 5.01
27 28 3.775202 TGTTGAACAAACAAATCCGGTG 58.225 40.909 0.00 0.00 45.85 4.94
36 37 6.092944 ACGTCTAGAATGTTGTTGAACAAACA 59.907 34.615 12.89 12.95 45.23 2.83
37 38 6.483687 ACGTCTAGAATGTTGTTGAACAAAC 58.516 36.000 12.89 7.84 45.23 2.93
38 39 6.671614 ACGTCTAGAATGTTGTTGAACAAA 57.328 33.333 12.89 4.05 45.23 2.83
39 40 6.238266 GGAACGTCTAGAATGTTGTTGAACAA 60.238 38.462 14.48 6.66 45.23 2.83
40 41 5.235616 GGAACGTCTAGAATGTTGTTGAACA 59.764 40.000 14.48 0.00 46.13 3.18
41 42 5.465724 AGGAACGTCTAGAATGTTGTTGAAC 59.534 40.000 14.48 0.00 37.22 3.18
42 43 5.607477 AGGAACGTCTAGAATGTTGTTGAA 58.393 37.500 14.48 0.00 37.22 2.69
43 44 5.209818 AGGAACGTCTAGAATGTTGTTGA 57.790 39.130 14.48 0.00 37.22 3.18
44 45 7.596749 ATTAGGAACGTCTAGAATGTTGTTG 57.403 36.000 14.48 0.00 37.22 3.33
45 46 8.617290 AAATTAGGAACGTCTAGAATGTTGTT 57.383 30.769 14.48 5.97 37.22 2.83
46 47 8.095169 AGAAATTAGGAACGTCTAGAATGTTGT 58.905 33.333 14.48 6.22 37.22 3.32
47 48 8.480643 AGAAATTAGGAACGTCTAGAATGTTG 57.519 34.615 14.48 0.00 37.22 3.33
48 49 9.804758 CTAGAAATTAGGAACGTCTAGAATGTT 57.195 33.333 10.52 10.52 40.04 2.71
49 50 7.921745 GCTAGAAATTAGGAACGTCTAGAATGT 59.078 37.037 10.81 0.00 40.04 2.71
50 51 7.921214 TGCTAGAAATTAGGAACGTCTAGAATG 59.079 37.037 10.81 0.00 40.04 2.67
51 52 8.008513 TGCTAGAAATTAGGAACGTCTAGAAT 57.991 34.615 10.81 0.00 40.04 2.40
52 53 7.400599 TGCTAGAAATTAGGAACGTCTAGAA 57.599 36.000 10.81 0.00 40.04 2.10
53 54 7.400599 TTGCTAGAAATTAGGAACGTCTAGA 57.599 36.000 10.81 0.00 40.04 2.43
54 55 8.138712 AGATTGCTAGAAATTAGGAACGTCTAG 58.861 37.037 0.00 4.42 40.42 2.43
55 56 7.921214 CAGATTGCTAGAAATTAGGAACGTCTA 59.079 37.037 0.00 0.00 0.00 2.59
56 57 6.758886 CAGATTGCTAGAAATTAGGAACGTCT 59.241 38.462 0.00 0.00 0.00 4.18
57 58 6.018669 CCAGATTGCTAGAAATTAGGAACGTC 60.019 42.308 8.71 0.00 0.00 4.34
58 59 5.817816 CCAGATTGCTAGAAATTAGGAACGT 59.182 40.000 8.71 0.00 0.00 3.99
59 60 5.817816 ACCAGATTGCTAGAAATTAGGAACG 59.182 40.000 17.62 0.00 0.00 3.95
60 61 6.599638 ACACCAGATTGCTAGAAATTAGGAAC 59.400 38.462 17.62 0.00 0.00 3.62
61 62 6.599244 CACACCAGATTGCTAGAAATTAGGAA 59.401 38.462 17.62 0.00 0.00 3.36
62 63 6.115446 CACACCAGATTGCTAGAAATTAGGA 58.885 40.000 17.62 0.00 0.00 2.94
63 64 5.220931 GCACACCAGATTGCTAGAAATTAGG 60.221 44.000 11.67 11.67 35.74 2.69
64 65 5.355071 TGCACACCAGATTGCTAGAAATTAG 59.645 40.000 0.00 0.00 39.62 1.73
65 66 5.252547 TGCACACCAGATTGCTAGAAATTA 58.747 37.500 0.00 0.00 39.62 1.40
66 67 4.081406 TGCACACCAGATTGCTAGAAATT 58.919 39.130 0.00 0.00 39.62 1.82
67 68 3.689347 TGCACACCAGATTGCTAGAAAT 58.311 40.909 0.00 0.00 39.62 2.17
68 69 3.138884 TGCACACCAGATTGCTAGAAA 57.861 42.857 0.00 0.00 39.62 2.52
69 70 2.857186 TGCACACCAGATTGCTAGAA 57.143 45.000 0.00 0.00 39.62 2.10
70 71 2.635714 CATGCACACCAGATTGCTAGA 58.364 47.619 0.00 0.00 39.62 2.43
71 72 1.065102 GCATGCACACCAGATTGCTAG 59.935 52.381 14.21 0.00 39.62 3.42
72 73 1.097232 GCATGCACACCAGATTGCTA 58.903 50.000 14.21 0.00 39.62 3.49
73 74 1.601419 GGCATGCACACCAGATTGCT 61.601 55.000 21.36 0.00 39.62 3.91
74 75 1.153706 GGCATGCACACCAGATTGC 60.154 57.895 21.36 0.00 39.33 3.56
75 76 1.138036 CGGCATGCACACCAGATTG 59.862 57.895 21.36 0.00 0.00 2.67
76 77 1.002257 TCGGCATGCACACCAGATT 60.002 52.632 21.36 0.00 0.00 2.40
77 78 1.450848 CTCGGCATGCACACCAGAT 60.451 57.895 21.36 0.00 0.00 2.90
78 79 2.046988 CTCGGCATGCACACCAGA 60.047 61.111 21.36 7.44 0.00 3.86
79 80 3.807538 GCTCGGCATGCACACCAG 61.808 66.667 21.36 8.03 0.00 4.00
80 81 4.639906 TGCTCGGCATGCACACCA 62.640 61.111 21.36 8.11 35.31 4.17
89 90 2.108168 AGTAGTAAGGAATGCTCGGCA 58.892 47.619 1.01 1.01 44.86 5.69
90 91 2.892784 AGTAGTAAGGAATGCTCGGC 57.107 50.000 0.00 0.00 0.00 5.54
91 92 6.292919 GCAAATTAGTAGTAAGGAATGCTCGG 60.293 42.308 10.05 0.00 0.00 4.63
92 93 6.257849 TGCAAATTAGTAGTAAGGAATGCTCG 59.742 38.462 14.91 0.00 0.00 5.03
93 94 7.553881 TGCAAATTAGTAGTAAGGAATGCTC 57.446 36.000 14.91 0.00 0.00 4.26
94 95 7.775093 TCATGCAAATTAGTAGTAAGGAATGCT 59.225 33.333 14.91 0.00 0.00 3.79
95 96 7.930217 TCATGCAAATTAGTAGTAAGGAATGC 58.070 34.615 0.00 10.26 0.00 3.56
98 99 8.902806 CCATTCATGCAAATTAGTAGTAAGGAA 58.097 33.333 0.00 0.00 0.00 3.36
99 100 8.052748 ACCATTCATGCAAATTAGTAGTAAGGA 58.947 33.333 0.00 0.00 0.00 3.36
100 101 8.225603 ACCATTCATGCAAATTAGTAGTAAGG 57.774 34.615 0.00 0.00 0.00 2.69
103 104 8.822855 CGTAACCATTCATGCAAATTAGTAGTA 58.177 33.333 0.00 0.00 0.00 1.82
104 105 7.201696 CCGTAACCATTCATGCAAATTAGTAGT 60.202 37.037 0.00 0.00 0.00 2.73
105 106 7.132213 CCGTAACCATTCATGCAAATTAGTAG 58.868 38.462 0.00 0.00 0.00 2.57
106 107 6.600032 ACCGTAACCATTCATGCAAATTAGTA 59.400 34.615 0.00 0.00 0.00 1.82
107 108 5.417580 ACCGTAACCATTCATGCAAATTAGT 59.582 36.000 0.00 0.00 0.00 2.24
108 109 5.890334 ACCGTAACCATTCATGCAAATTAG 58.110 37.500 0.00 0.00 0.00 1.73
109 110 5.906113 ACCGTAACCATTCATGCAAATTA 57.094 34.783 0.00 0.00 0.00 1.40
110 111 4.799564 ACCGTAACCATTCATGCAAATT 57.200 36.364 0.00 0.00 0.00 1.82
111 112 4.493547 CAACCGTAACCATTCATGCAAAT 58.506 39.130 0.00 0.00 0.00 2.32
112 113 3.305676 CCAACCGTAACCATTCATGCAAA 60.306 43.478 0.00 0.00 0.00 3.68
113 114 2.230025 CCAACCGTAACCATTCATGCAA 59.770 45.455 0.00 0.00 0.00 4.08
114 115 1.815613 CCAACCGTAACCATTCATGCA 59.184 47.619 0.00 0.00 0.00 3.96
115 116 1.469079 GCCAACCGTAACCATTCATGC 60.469 52.381 0.00 0.00 0.00 4.06
116 117 1.815613 TGCCAACCGTAACCATTCATG 59.184 47.619 0.00 0.00 0.00 3.07
117 118 1.816224 GTGCCAACCGTAACCATTCAT 59.184 47.619 0.00 0.00 0.00 2.57
118 119 1.202830 AGTGCCAACCGTAACCATTCA 60.203 47.619 0.00 0.00 0.00 2.57
119 120 1.530323 AGTGCCAACCGTAACCATTC 58.470 50.000 0.00 0.00 0.00 2.67
120 121 2.863132 TAGTGCCAACCGTAACCATT 57.137 45.000 0.00 0.00 0.00 3.16
121 122 3.013921 CAATAGTGCCAACCGTAACCAT 58.986 45.455 0.00 0.00 0.00 3.55
122 123 2.428491 CAATAGTGCCAACCGTAACCA 58.572 47.619 0.00 0.00 0.00 3.67
123 124 1.741145 CCAATAGTGCCAACCGTAACC 59.259 52.381 0.00 0.00 0.00 2.85
124 125 2.702261 TCCAATAGTGCCAACCGTAAC 58.298 47.619 0.00 0.00 0.00 2.50
125 126 3.637911 ATCCAATAGTGCCAACCGTAA 57.362 42.857 0.00 0.00 0.00 3.18
126 127 4.262721 GGATATCCAATAGTGCCAACCGTA 60.263 45.833 17.34 0.00 35.64 4.02
127 128 3.496160 GGATATCCAATAGTGCCAACCGT 60.496 47.826 17.34 0.00 35.64 4.83
128 129 3.074412 GGATATCCAATAGTGCCAACCG 58.926 50.000 17.34 0.00 35.64 4.44
129 130 3.181434 TGGGATATCCAATAGTGCCAACC 60.181 47.826 23.27 1.74 43.84 3.77
130 131 4.098914 TGGGATATCCAATAGTGCCAAC 57.901 45.455 23.27 1.94 43.84 3.77
142 143 7.510675 TTGGATAAGGTTAGATGGGATATCC 57.489 40.000 13.87 13.87 38.40 2.59
143 144 9.454859 CTTTTGGATAAGGTTAGATGGGATATC 57.545 37.037 0.00 0.00 0.00 1.63
144 145 8.394040 CCTTTTGGATAAGGTTAGATGGGATAT 58.606 37.037 0.00 0.00 44.07 1.63
145 146 7.755618 CCTTTTGGATAAGGTTAGATGGGATA 58.244 38.462 0.00 0.00 44.07 2.59
146 147 6.614657 CCTTTTGGATAAGGTTAGATGGGAT 58.385 40.000 0.00 0.00 44.07 3.85
147 148 6.013554 CCTTTTGGATAAGGTTAGATGGGA 57.986 41.667 0.00 0.00 44.07 4.37
160 161 8.786127 GAGTATGTACTCCCCACCTTTTGGATA 61.786 44.444 8.65 0.00 46.10 2.59
161 162 8.053155 GAGTATGTACTCCCCACCTTTTGGAT 62.053 46.154 8.65 0.00 46.10 3.41
162 163 6.808591 GAGTATGTACTCCCCACCTTTTGGA 61.809 48.000 8.65 0.00 46.10 3.53
163 164 2.899303 ATGTACTCCCCACCTTTTGG 57.101 50.000 0.00 0.00 46.47 3.28
164 165 4.514401 GAGTATGTACTCCCCACCTTTTG 58.486 47.826 8.65 0.00 45.33 2.44
165 166 4.838904 GAGTATGTACTCCCCACCTTTT 57.161 45.455 8.65 0.00 45.33 2.27
183 184 9.225682 TCCTAGGACCAAATTTATGATAAGAGT 57.774 33.333 7.62 0.00 0.00 3.24
184 185 9.495572 GTCCTAGGACCAAATTTATGATAAGAG 57.504 37.037 28.87 0.00 39.08 2.85
240 241 3.881019 AACGGAGCCCTCTCACCGA 62.881 63.158 11.27 0.00 46.94 4.69
274 275 4.339814 TGGCACAAACCCTAACAAAACTAG 59.660 41.667 0.00 0.00 31.92 2.57
275 276 4.279145 TGGCACAAACCCTAACAAAACTA 58.721 39.130 0.00 0.00 31.92 2.24
330 331 4.709886 CGGGGAGAACCTTATTCCATTTTT 59.290 41.667 0.00 0.00 40.03 1.94
333 334 2.422945 GCGGGGAGAACCTTATTCCATT 60.423 50.000 0.00 0.00 40.03 3.16
379 380 2.709934 ACATGCCCTCTGAAGATGCTAT 59.290 45.455 0.00 0.00 0.00 2.97
438 439 2.159099 GCGGATCCATCTAAGACACACA 60.159 50.000 13.41 0.00 0.00 3.72
441 444 3.126831 CAAGCGGATCCATCTAAGACAC 58.873 50.000 13.41 0.00 0.00 3.67
469 472 7.097192 ACACACTGACATAGACGAACAAATAT 58.903 34.615 0.00 0.00 0.00 1.28
471 474 5.297547 ACACACTGACATAGACGAACAAAT 58.702 37.500 0.00 0.00 0.00 2.32
497 500 8.423906 AACATAGATCGAAGGATATAACCTGT 57.576 34.615 1.71 0.00 40.49 4.00
521 525 4.436852 GCAATTGACGCCGATAAAGAGAAA 60.437 41.667 10.34 0.00 0.00 2.52
529 533 1.732941 AACAGCAATTGACGCCGATA 58.267 45.000 10.34 0.00 0.00 2.92
537 541 1.850377 CGCACCAAAACAGCAATTGA 58.150 45.000 10.34 0.00 0.00 2.57
539 543 0.104671 AGCGCACCAAAACAGCAATT 59.895 45.000 11.47 0.00 0.00 2.32
540 544 0.598158 CAGCGCACCAAAACAGCAAT 60.598 50.000 11.47 0.00 0.00 3.56
549 553 0.676466 CAATAGGACCAGCGCACCAA 60.676 55.000 11.47 0.00 0.00 3.67
579 583 0.681887 TAGACGCCGGGAAGACATCA 60.682 55.000 2.18 0.00 0.00 3.07
582 586 0.035152 TAGTAGACGCCGGGAAGACA 60.035 55.000 2.18 0.00 0.00 3.41
584 588 0.035152 TGTAGTAGACGCCGGGAAGA 60.035 55.000 2.18 0.00 0.00 2.87
592 596 3.363673 GCAAACCTTGTTGTAGTAGACGC 60.364 47.826 0.00 0.00 0.00 5.19
626 631 3.470888 CGTCATCGCCCCTCCCTT 61.471 66.667 0.00 0.00 0.00 3.95
667 673 2.950309 ACCTAGCGACGACTACAATCAT 59.050 45.455 0.00 0.00 0.00 2.45
763 775 8.017587 TGACGTGCATGTCATATATATTTCAC 57.982 34.615 32.80 7.56 43.62 3.18
796 808 7.975616 GGTGATTGTACATGTCATATGCTTTTT 59.024 33.333 0.00 0.00 0.00 1.94
797 809 7.340232 AGGTGATTGTACATGTCATATGCTTTT 59.660 33.333 0.00 0.00 0.00 2.27
798 810 6.830324 AGGTGATTGTACATGTCATATGCTTT 59.170 34.615 0.00 0.00 0.00 3.51
799 811 6.359804 AGGTGATTGTACATGTCATATGCTT 58.640 36.000 0.00 0.00 0.00 3.91
800 812 5.933617 AGGTGATTGTACATGTCATATGCT 58.066 37.500 0.00 0.00 0.00 3.79
801 813 6.293626 GGAAGGTGATTGTACATGTCATATGC 60.294 42.308 0.00 5.62 0.00 3.14
802 814 6.994496 AGGAAGGTGATTGTACATGTCATATG 59.006 38.462 0.00 0.00 0.00 1.78
803 815 7.141758 AGGAAGGTGATTGTACATGTCATAT 57.858 36.000 0.00 0.00 0.00 1.78
804 816 6.560003 AGGAAGGTGATTGTACATGTCATA 57.440 37.500 0.00 0.00 0.00 2.15
805 817 5.441718 AGGAAGGTGATTGTACATGTCAT 57.558 39.130 0.00 0.00 0.00 3.06
806 818 4.908601 AGGAAGGTGATTGTACATGTCA 57.091 40.909 0.00 1.61 0.00 3.58
807 819 8.958119 TTATAAGGAAGGTGATTGTACATGTC 57.042 34.615 0.00 0.00 0.00 3.06
847 859 8.773216 AGAGCTTAACTTTAATAGGAAGGTGAT 58.227 33.333 0.00 0.00 34.04 3.06
848 860 8.041323 CAGAGCTTAACTTTAATAGGAAGGTGA 58.959 37.037 0.00 0.00 34.04 4.02
849 861 8.041323 TCAGAGCTTAACTTTAATAGGAAGGTG 58.959 37.037 0.00 0.00 34.04 4.00
850 862 8.041919 GTCAGAGCTTAACTTTAATAGGAAGGT 58.958 37.037 0.00 0.00 35.57 3.50
851 863 7.496263 GGTCAGAGCTTAACTTTAATAGGAAGG 59.504 40.741 0.00 0.00 0.00 3.46
852 864 8.041323 TGGTCAGAGCTTAACTTTAATAGGAAG 58.959 37.037 0.38 0.00 0.00 3.46
853 865 7.913789 TGGTCAGAGCTTAACTTTAATAGGAA 58.086 34.615 0.38 0.00 0.00 3.36
854 866 7.490657 TGGTCAGAGCTTAACTTTAATAGGA 57.509 36.000 0.38 0.00 0.00 2.94
855 867 8.561738 TTTGGTCAGAGCTTAACTTTAATAGG 57.438 34.615 0.38 0.00 0.00 2.57
856 868 8.178313 GCTTTGGTCAGAGCTTAACTTTAATAG 58.822 37.037 6.28 0.00 35.84 1.73
857 869 7.148474 CGCTTTGGTCAGAGCTTAACTTTAATA 60.148 37.037 10.94 0.00 36.51 0.98
858 870 6.348540 CGCTTTGGTCAGAGCTTAACTTTAAT 60.349 38.462 10.94 0.00 36.51 1.40
859 871 5.049680 CGCTTTGGTCAGAGCTTAACTTTAA 60.050 40.000 10.94 0.00 36.51 1.52
860 872 4.451096 CGCTTTGGTCAGAGCTTAACTTTA 59.549 41.667 10.94 0.00 36.51 1.85
861 873 3.251004 CGCTTTGGTCAGAGCTTAACTTT 59.749 43.478 10.94 0.00 36.51 2.66
862 874 2.808543 CGCTTTGGTCAGAGCTTAACTT 59.191 45.455 10.94 0.00 36.51 2.66
863 875 2.417719 CGCTTTGGTCAGAGCTTAACT 58.582 47.619 10.94 0.00 36.51 2.24
864 876 1.464997 CCGCTTTGGTCAGAGCTTAAC 59.535 52.381 10.94 0.00 36.51 2.01
865 877 1.808411 CCGCTTTGGTCAGAGCTTAA 58.192 50.000 10.94 0.00 36.51 1.85
866 878 3.532896 CCGCTTTGGTCAGAGCTTA 57.467 52.632 10.94 0.00 36.51 3.09
867 879 4.386413 CCGCTTTGGTCAGAGCTT 57.614 55.556 10.94 0.00 36.51 3.74
912 924 3.635433 CGGAGATCGCGGAAAAGTA 57.365 52.632 6.13 0.00 0.00 2.24
967 983 0.108233 GAGGAGGCAACAGAGCAGAG 60.108 60.000 0.00 0.00 41.41 3.35
968 984 0.833409 TGAGGAGGCAACAGAGCAGA 60.833 55.000 0.00 0.00 41.41 4.26
969 985 0.673022 GTGAGGAGGCAACAGAGCAG 60.673 60.000 0.00 0.00 41.41 4.24
970 986 1.372683 GTGAGGAGGCAACAGAGCA 59.627 57.895 0.00 0.00 41.41 4.26
977 993 1.229082 AGGGTACGTGAGGAGGCAA 60.229 57.895 0.00 0.00 0.00 4.52
1305 1368 2.181975 CACATCCAAAGCCCAGGAATT 58.818 47.619 0.00 0.00 37.48 2.17
1310 1373 2.028748 CCTTTTCACATCCAAAGCCCAG 60.029 50.000 0.00 0.00 0.00 4.45
1323 1386 5.154222 CAAGTAAGGCGAATTCCTTTTCAC 58.846 41.667 3.91 0.00 43.62 3.18
1443 1520 2.283145 ATATGCTTGCCAGATGTCCC 57.717 50.000 0.00 0.00 0.00 4.46
1600 1709 1.404717 CGTCTGCCATTCAGTAGCACT 60.405 52.381 0.00 0.00 43.32 4.40
1996 4298 4.180377 ACATTATGAGACGGAGGGAGTA 57.820 45.455 0.00 0.00 0.00 2.59
1997 4299 3.033659 ACATTATGAGACGGAGGGAGT 57.966 47.619 0.00 0.00 0.00 3.85
1998 4300 4.827835 TCTTACATTATGAGACGGAGGGAG 59.172 45.833 0.00 0.00 0.00 4.30
1999 4301 4.583489 GTCTTACATTATGAGACGGAGGGA 59.417 45.833 0.00 0.00 34.53 4.20
2000 4302 4.872664 GTCTTACATTATGAGACGGAGGG 58.127 47.826 0.00 0.00 34.53 4.30
2006 4308 9.474249 GTTAAAAAGCGTCTTACATTATGAGAC 57.526 33.333 0.00 1.64 39.92 3.36
2007 4309 9.210329 TGTTAAAAAGCGTCTTACATTATGAGA 57.790 29.630 0.00 0.00 0.00 3.27
2008 4310 9.988350 ATGTTAAAAAGCGTCTTACATTATGAG 57.012 29.630 0.00 0.00 0.00 2.90
2018 4320 9.607285 CACTACAATAATGTTAAAAAGCGTCTT 57.393 29.630 0.00 0.00 41.05 3.01
2019 4321 8.780249 ACACTACAATAATGTTAAAAAGCGTCT 58.220 29.630 0.00 0.00 41.05 4.18
2020 4322 8.944212 ACACTACAATAATGTTAAAAAGCGTC 57.056 30.769 0.00 0.00 41.05 5.19
2048 4350 6.151985 TCCGTGCCATAATGTAAGACATTTTT 59.848 34.615 9.92 0.00 45.80 1.94
2049 4351 5.650266 TCCGTGCCATAATGTAAGACATTTT 59.350 36.000 9.92 0.33 45.80 1.82
2050 4352 5.189928 TCCGTGCCATAATGTAAGACATTT 58.810 37.500 9.92 0.00 45.80 2.32
2052 4354 4.380531 CTCCGTGCCATAATGTAAGACAT 58.619 43.478 0.00 0.00 41.31 3.06
2053 4355 3.431626 CCTCCGTGCCATAATGTAAGACA 60.432 47.826 0.00 0.00 0.00 3.41
2054 4356 3.131396 CCTCCGTGCCATAATGTAAGAC 58.869 50.000 0.00 0.00 0.00 3.01
2055 4357 3.035363 TCCTCCGTGCCATAATGTAAGA 58.965 45.455 0.00 0.00 0.00 2.10
2056 4358 3.181465 ACTCCTCCGTGCCATAATGTAAG 60.181 47.826 0.00 0.00 0.00 2.34
2057 4359 2.769663 ACTCCTCCGTGCCATAATGTAA 59.230 45.455 0.00 0.00 0.00 2.41
2058 4360 2.394632 ACTCCTCCGTGCCATAATGTA 58.605 47.619 0.00 0.00 0.00 2.29
2059 4361 1.204146 ACTCCTCCGTGCCATAATGT 58.796 50.000 0.00 0.00 0.00 2.71
2060 4362 2.365617 ACTACTCCTCCGTGCCATAATG 59.634 50.000 0.00 0.00 0.00 1.90
2061 4363 2.679082 ACTACTCCTCCGTGCCATAAT 58.321 47.619 0.00 0.00 0.00 1.28
2062 4364 2.154567 ACTACTCCTCCGTGCCATAA 57.845 50.000 0.00 0.00 0.00 1.90
2063 4365 2.154567 AACTACTCCTCCGTGCCATA 57.845 50.000 0.00 0.00 0.00 2.74
2064 4366 1.276622 AAACTACTCCTCCGTGCCAT 58.723 50.000 0.00 0.00 0.00 4.40
2065 4367 1.053424 AAAACTACTCCTCCGTGCCA 58.947 50.000 0.00 0.00 0.00 4.92
2066 4368 2.180432 AAAAACTACTCCTCCGTGCC 57.820 50.000 0.00 0.00 0.00 5.01
2067 4369 7.549615 AATAATAAAAACTACTCCTCCGTGC 57.450 36.000 0.00 0.00 0.00 5.34
2068 4370 9.983804 GAAAATAATAAAAACTACTCCTCCGTG 57.016 33.333 0.00 0.00 0.00 4.94
2069 4371 9.955102 AGAAAATAATAAAAACTACTCCTCCGT 57.045 29.630 0.00 0.00 0.00 4.69
2291 4686 3.527507 TGGGGATCTAAGTAGCTCGAT 57.472 47.619 0.00 0.00 0.00 3.59
2399 4794 2.816087 GCATCTTCTCTCTGCCAAAACA 59.184 45.455 0.00 0.00 0.00 2.83
2507 4908 5.221165 GGTTGCTACAGAGGCTTTAAAACAA 60.221 40.000 0.00 0.00 0.00 2.83
2517 4918 1.741770 CACGGGTTGCTACAGAGGC 60.742 63.158 0.00 0.00 0.00 4.70
2617 5125 7.710475 CCAGTATTTTCACAATGACAAAACCTT 59.290 33.333 0.00 0.00 0.00 3.50
2679 5196 5.641209 AGCAATGAACAACTACTGCTAGAAG 59.359 40.000 0.00 0.00 38.32 2.85
2822 5343 2.527624 TGCACTGCCTCCTGGACT 60.528 61.111 0.00 0.00 34.57 3.85
3014 5545 3.806316 AGACGTTCATAAGTTTTGCCG 57.194 42.857 0.00 4.55 0.00 5.69
3041 5573 5.301551 TGCAACAGAGTTCACCATAAACAAT 59.698 36.000 0.00 0.00 0.00 2.71
3259 6032 4.046286 TGCTATGGAGGGTTCAAAACAT 57.954 40.909 0.00 0.00 0.00 2.71
3322 6095 1.803334 TGTATGTTTCCGTGGCAGTC 58.197 50.000 0.00 0.00 0.00 3.51
3337 6189 9.034544 GCACTTTTTGAAACTTTGATCTTGTAT 57.965 29.630 0.00 0.00 0.00 2.29
3434 9370 8.336080 GGACAACTACTGTTAGAACAAAGAAAG 58.664 37.037 10.03 1.59 38.84 2.62
3532 9760 2.775911 TCACAGCTGATCCCTTTCAG 57.224 50.000 23.35 0.00 44.87 3.02
3598 9826 1.237285 CCGTTCACAAAGCTCCCCTG 61.237 60.000 0.00 0.00 0.00 4.45
3599 9827 1.073199 CCGTTCACAAAGCTCCCCT 59.927 57.895 0.00 0.00 0.00 4.79
3602 9830 1.798813 CTGTACCGTTCACAAAGCTCC 59.201 52.381 0.00 0.00 0.00 4.70
3614 9842 1.066143 CCAATCTTGAGGCTGTACCGT 60.066 52.381 0.00 0.00 46.52 4.83
3615 9843 1.656652 CCAATCTTGAGGCTGTACCG 58.343 55.000 0.00 0.00 46.52 4.02
3624 9852 1.737838 TAGTTGGCGCCAATCTTGAG 58.262 50.000 41.80 0.00 38.28 3.02
3625 9853 2.016318 CATAGTTGGCGCCAATCTTGA 58.984 47.619 41.80 25.09 38.28 3.02
3626 9854 2.016318 TCATAGTTGGCGCCAATCTTG 58.984 47.619 41.80 33.74 38.28 3.02
3628 9856 2.292267 CTTCATAGTTGGCGCCAATCT 58.708 47.619 41.80 36.03 38.28 2.40
3629 9857 1.268743 GCTTCATAGTTGGCGCCAATC 60.269 52.381 41.80 32.24 38.28 2.67
3630 9858 0.740737 GCTTCATAGTTGGCGCCAAT 59.259 50.000 41.80 30.47 38.28 3.16
3631 9859 1.312371 GGCTTCATAGTTGGCGCCAA 61.312 55.000 37.30 37.30 38.02 4.52
3632 9860 1.748879 GGCTTCATAGTTGGCGCCA 60.749 57.895 29.03 29.03 38.02 5.69
3633 9861 2.823829 CGGCTTCATAGTTGGCGCC 61.824 63.158 22.73 22.73 42.24 6.53
3634 9862 2.709475 CGGCTTCATAGTTGGCGC 59.291 61.111 0.00 0.00 42.24 6.53
3636 9864 1.312371 TTGGCGGCTTCATAGTTGGC 61.312 55.000 11.43 0.00 0.00 4.52
3637 9865 0.734889 CTTGGCGGCTTCATAGTTGG 59.265 55.000 11.43 0.00 0.00 3.77
3638 9866 1.453155 ACTTGGCGGCTTCATAGTTG 58.547 50.000 11.43 0.00 0.00 3.16
3639 9867 2.200373 AACTTGGCGGCTTCATAGTT 57.800 45.000 11.43 9.03 0.00 2.24
3640 9868 1.812571 CAAACTTGGCGGCTTCATAGT 59.187 47.619 11.43 3.13 0.00 2.12
3641 9869 2.083774 TCAAACTTGGCGGCTTCATAG 58.916 47.619 11.43 2.49 0.00 2.23
3642 9870 2.192664 TCAAACTTGGCGGCTTCATA 57.807 45.000 11.43 0.00 0.00 2.15
3643 9871 1.270550 CTTCAAACTTGGCGGCTTCAT 59.729 47.619 11.43 0.00 0.00 2.57
3644 9872 0.667993 CTTCAAACTTGGCGGCTTCA 59.332 50.000 11.43 0.00 0.00 3.02
3645 9873 0.951558 TCTTCAAACTTGGCGGCTTC 59.048 50.000 11.43 0.00 0.00 3.86
3646 9874 1.620822 ATCTTCAAACTTGGCGGCTT 58.379 45.000 11.43 0.00 0.00 4.35
3647 9875 1.620822 AATCTTCAAACTTGGCGGCT 58.379 45.000 11.43 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.