Multiple sequence alignment - TraesCS2B01G119500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G119500 chr2B 100.000 4336 0 0 1 4336 86686927 86691262 0.000000e+00 8008.0
1 TraesCS2B01G119500 chr2B 88.147 599 34 16 3586 4153 86214538 86215130 0.000000e+00 678.0
2 TraesCS2B01G119500 chr2B 84.211 190 19 8 455 641 636136735 636136916 1.600000e-39 174.0
3 TraesCS2B01G119500 chr2B 89.873 79 8 0 379 457 715957847 715957769 7.670000e-18 102.0
4 TraesCS2B01G119500 chr2B 98.214 56 1 0 3571 3626 86690439 86690494 9.920000e-17 99.0
5 TraesCS2B01G119500 chr2B 98.214 56 1 0 3513 3568 86690497 86690552 9.920000e-17 99.0
6 TraesCS2B01G119500 chr2B 88.608 79 9 0 379 457 715946056 715945978 3.570000e-16 97.1
7 TraesCS2B01G119500 chr2B 100.000 41 0 0 3528 3568 86214538 86214578 4.650000e-10 76.8
8 TraesCS2B01G119500 chr2B 96.774 31 1 0 4283 4313 86691119 86691089 8.000000e-03 52.8
9 TraesCS2B01G119500 chr2B 100.000 28 0 0 4166 4193 86691236 86691209 8.000000e-03 52.8
10 TraesCS2B01G119500 chr2D 95.720 2570 80 12 977 3533 55142899 55140347 0.000000e+00 4109.0
11 TraesCS2B01G119500 chr2D 87.040 625 41 19 3586 4180 55060953 55061567 0.000000e+00 669.0
12 TraesCS2B01G119500 chr2D 95.527 313 9 2 645 956 55143274 55142966 3.010000e-136 496.0
13 TraesCS2B01G119500 chr2A 97.295 2255 50 7 1283 3533 55865396 55863149 0.000000e+00 3816.0
14 TraesCS2B01G119500 chr2A 85.597 611 53 16 3586 4183 55854778 55855366 3.710000e-170 608.0
15 TraesCS2B01G119500 chr1D 93.224 1771 70 17 1769 3533 394271200 394272926 0.000000e+00 2560.0
16 TraesCS2B01G119500 chr1D 92.553 470 34 1 994 1463 394269163 394269631 0.000000e+00 673.0
17 TraesCS2B01G119500 chr1D 93.082 318 12 4 1458 1768 394270802 394271116 1.420000e-124 457.0
18 TraesCS2B01G119500 chr1B 93.399 1621 83 18 1769 3386 527834242 527832643 0.000000e+00 2379.0
19 TraesCS2B01G119500 chr1B 93.059 389 26 1 1075 1463 527836249 527835862 6.290000e-158 568.0
20 TraesCS2B01G119500 chr1B 95.455 308 14 0 1461 1768 527834631 527834324 3.900000e-135 492.0
21 TraesCS2B01G119500 chr1B 94.531 128 7 0 3406 3533 527832651 527832524 9.510000e-47 198.0
22 TraesCS2B01G119500 chr1A 92.993 842 35 7 2511 3352 491136168 491135351 0.000000e+00 1206.0
23 TraesCS2B01G119500 chr1A 95.442 746 25 7 1769 2512 491137067 491136329 0.000000e+00 1181.0
24 TraesCS2B01G119500 chr1A 92.340 470 35 1 994 1463 491139202 491138734 0.000000e+00 667.0
25 TraesCS2B01G119500 chr1A 95.779 308 12 1 1461 1768 491137458 491137152 3.010000e-136 496.0
26 TraesCS2B01G119500 chr1A 95.385 130 6 0 3404 3533 491135335 491135206 1.580000e-49 207.0
27 TraesCS2B01G119500 chr1A 92.437 119 8 1 884 1001 491139367 491139249 7.460000e-38 169.0
28 TraesCS2B01G119500 chr1A 87.500 64 6 2 579 641 541540373 541540435 6.010000e-09 73.1
29 TraesCS2B01G119500 chr5A 86.702 376 29 8 269 644 641211970 641212324 8.740000e-107 398.0
30 TraesCS2B01G119500 chr7D 89.028 319 34 1 1990 2307 382365405 382365087 1.130000e-105 394.0
31 TraesCS2B01G119500 chr5D 87.774 319 38 1 1990 2307 32410506 32410824 5.300000e-99 372.0
32 TraesCS2B01G119500 chr5D 82.558 172 19 9 474 641 461454117 461453953 1.630000e-29 141.0
33 TraesCS2B01G119500 chr5D 90.000 70 0 1 799 868 475015051 475015113 2.780000e-12 84.2
34 TraesCS2B01G119500 chr5D 79.130 115 10 9 768 868 384874168 384874282 2.800000e-07 67.6
35 TraesCS2B01G119500 chr5D 100.000 33 0 0 768 800 475014999 475015031 1.300000e-05 62.1
36 TraesCS2B01G119500 chr7A 86.154 195 27 0 1990 2184 121334427 121334233 1.220000e-50 211.0
37 TraesCS2B01G119500 chr7A 84.737 190 18 8 455 641 473614137 473614318 3.450000e-41 180.0
38 TraesCS2B01G119500 chr7A 81.675 191 25 4 452 641 37927300 37927481 2.700000e-32 150.0
39 TraesCS2B01G119500 chr5B 85.641 195 27 1 1990 2183 577886430 577886624 2.040000e-48 204.0
40 TraesCS2B01G119500 chr5B 81.564 179 20 11 474 647 38557538 38557368 7.560000e-28 135.0
41 TraesCS2B01G119500 chr5B 95.385 65 3 0 2632 2696 577886636 577886700 2.130000e-18 104.0
42 TraesCS2B01G119500 chr6B 85.204 196 17 10 455 646 567910999 567911186 1.590000e-44 191.0
43 TraesCS2B01G119500 chr6B 100.000 36 0 0 606 641 706653780 706653745 2.800000e-07 67.6
44 TraesCS2B01G119500 chr3B 84.375 192 18 10 455 641 783966770 783966586 1.240000e-40 178.0
45 TraesCS2B01G119500 chr3B 78.182 220 46 2 1130 1348 602296021 602296239 5.850000e-29 139.0
46 TraesCS2B01G119500 chr3D 79.091 220 44 2 1130 1348 455853553 455853771 2.700000e-32 150.0
47 TraesCS2B01G119500 chr3D 79.130 115 10 9 768 868 75201215 75201329 2.800000e-07 67.6
48 TraesCS2B01G119500 chr3A 77.727 220 47 2 1130 1348 598542941 598543159 2.720000e-27 134.0
49 TraesCS2B01G119500 chrUn 82.979 94 14 2 123 214 353853680 353853587 2.780000e-12 84.2
50 TraesCS2B01G119500 chrUn 82.979 94 14 2 123 214 380048406 380048313 2.780000e-12 84.2
51 TraesCS2B01G119500 chr7B 82.979 94 14 2 123 214 725603001 725602908 2.780000e-12 84.2
52 TraesCS2B01G119500 chr7B 82.979 94 14 2 123 214 725638740 725638647 2.780000e-12 84.2
53 TraesCS2B01G119500 chr6A 90.000 70 0 1 799 868 161159452 161159514 2.780000e-12 84.2
54 TraesCS2B01G119500 chr6A 100.000 33 0 0 768 800 161159400 161159432 1.300000e-05 62.1
55 TraesCS2B01G119500 chr4A 82.051 78 11 3 565 641 119780956 119781031 3.620000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G119500 chr2B 86686927 86691262 4335 False 2735.333333 8008 98.809333 1 4336 3 chr2B.!!$F3 4335
1 TraesCS2B01G119500 chr2B 86214538 86215130 592 False 377.400000 678 94.073500 3528 4153 2 chr2B.!!$F2 625
2 TraesCS2B01G119500 chr2D 55140347 55143274 2927 True 2302.500000 4109 95.623500 645 3533 2 chr2D.!!$R1 2888
3 TraesCS2B01G119500 chr2D 55060953 55061567 614 False 669.000000 669 87.040000 3586 4180 1 chr2D.!!$F1 594
4 TraesCS2B01G119500 chr2A 55863149 55865396 2247 True 3816.000000 3816 97.295000 1283 3533 1 chr2A.!!$R1 2250
5 TraesCS2B01G119500 chr2A 55854778 55855366 588 False 608.000000 608 85.597000 3586 4183 1 chr2A.!!$F1 597
6 TraesCS2B01G119500 chr1D 394269163 394272926 3763 False 1230.000000 2560 92.953000 994 3533 3 chr1D.!!$F1 2539
7 TraesCS2B01G119500 chr1B 527832524 527836249 3725 True 909.250000 2379 94.111000 1075 3533 4 chr1B.!!$R1 2458
8 TraesCS2B01G119500 chr1A 491135206 491139367 4161 True 654.333333 1206 94.062667 884 3533 6 chr1A.!!$R1 2649

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
625 626 0.036306 GGACCACCCTGTCGTCAAAT 59.964 55.0 0.00 0.0 36.07 2.32 F
966 968 0.106719 CTCGGAAGGCTCTCTCCTCT 60.107 60.0 2.43 0.0 34.82 3.69 F
968 970 0.459489 CGGAAGGCTCTCTCCTCTTG 59.541 60.0 2.43 0.0 34.82 3.02 F
2664 4294 1.173043 CTGCCGTGCCTTTTGGATTA 58.827 50.0 0.00 0.0 44.07 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2085 3552 0.749649 CTTGGCAGCGAGACTCCTAT 59.250 55.000 0.0 0.0 0.00 2.57 R
2916 4546 0.250901 AAACAGCAAGATCGCCACCT 60.251 50.000 0.0 0.0 0.00 4.00 R
3006 4636 4.015084 CAAGATTCCCAGCAGTGAGAAAT 58.985 43.478 0.0 0.0 0.00 2.17 R
4284 5986 0.033208 CCTCCTATGGGCAGGCAAAA 60.033 55.000 0.0 0.0 35.49 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.358759 AAAAAGGAACGCAGCCACG 59.641 52.632 0.00 0.00 39.50 4.94
23 24 2.070654 AAAAAGGAACGCAGCCACGG 62.071 55.000 0.77 0.00 37.37 4.94
24 25 3.767630 AAAGGAACGCAGCCACGGT 62.768 57.895 0.77 0.00 37.37 4.83
27 28 3.414700 GAACGCAGCCACGGTCTG 61.415 66.667 6.76 3.90 46.20 3.51
28 29 4.235762 AACGCAGCCACGGTCTGT 62.236 61.111 0.77 0.00 37.37 3.41
29 30 4.664677 ACGCAGCCACGGTCTGTC 62.665 66.667 0.77 2.57 37.37 3.51
31 32 4.314440 GCAGCCACGGTCTGTCCA 62.314 66.667 8.61 0.00 35.57 4.02
32 33 2.357517 CAGCCACGGTCTGTCCAC 60.358 66.667 0.00 0.00 35.57 4.02
33 34 2.842462 AGCCACGGTCTGTCCACA 60.842 61.111 0.00 0.00 35.57 4.17
34 35 2.217038 AGCCACGGTCTGTCCACAT 61.217 57.895 0.00 0.00 35.57 3.21
35 36 1.741770 GCCACGGTCTGTCCACATC 60.742 63.158 0.00 0.00 35.57 3.06
36 37 1.446099 CCACGGTCTGTCCACATCG 60.446 63.158 0.00 0.00 35.57 3.84
37 38 1.584495 CACGGTCTGTCCACATCGA 59.416 57.895 0.00 0.00 35.57 3.59
38 39 0.456824 CACGGTCTGTCCACATCGAG 60.457 60.000 0.00 0.00 35.57 4.04
39 40 1.517257 CGGTCTGTCCACATCGAGC 60.517 63.158 0.00 0.00 35.57 5.03
40 41 1.591703 GGTCTGTCCACATCGAGCA 59.408 57.895 0.00 0.00 35.97 4.26
41 42 0.459237 GGTCTGTCCACATCGAGCAG 60.459 60.000 0.00 0.00 35.97 4.24
42 43 0.528017 GTCTGTCCACATCGAGCAGA 59.472 55.000 0.00 0.00 34.30 4.26
43 44 1.067565 GTCTGTCCACATCGAGCAGAA 60.068 52.381 0.00 0.00 37.84 3.02
44 45 1.067565 TCTGTCCACATCGAGCAGAAC 60.068 52.381 0.00 0.00 33.84 3.01
45 46 0.037326 TGTCCACATCGAGCAGAACC 60.037 55.000 0.00 0.00 0.00 3.62
46 47 0.247736 GTCCACATCGAGCAGAACCT 59.752 55.000 0.00 0.00 0.00 3.50
47 48 0.532573 TCCACATCGAGCAGAACCTC 59.467 55.000 0.00 0.00 0.00 3.85
53 54 4.461784 GAGCAGAACCTCGTCGTC 57.538 61.111 0.00 0.00 0.00 4.20
54 55 1.153997 GAGCAGAACCTCGTCGTCC 60.154 63.158 0.00 0.00 0.00 4.79
55 56 1.587933 GAGCAGAACCTCGTCGTCCT 61.588 60.000 0.00 0.00 0.00 3.85
56 57 1.153997 GCAGAACCTCGTCGTCCTC 60.154 63.158 0.00 0.00 0.00 3.71
57 58 1.134901 CAGAACCTCGTCGTCCTCG 59.865 63.158 0.00 0.00 38.55 4.63
58 59 2.202453 GAACCTCGTCGTCCTCGC 60.202 66.667 0.00 0.00 36.96 5.03
59 60 2.974489 GAACCTCGTCGTCCTCGCA 61.974 63.158 0.00 0.00 36.96 5.10
60 61 3.264866 AACCTCGTCGTCCTCGCAC 62.265 63.158 0.00 0.00 36.96 5.34
61 62 3.733960 CCTCGTCGTCCTCGCACA 61.734 66.667 0.00 0.00 36.96 4.57
62 63 2.202362 CTCGTCGTCCTCGCACAG 60.202 66.667 0.00 0.00 36.96 3.66
63 64 4.400109 TCGTCGTCCTCGCACAGC 62.400 66.667 0.00 0.00 36.96 4.40
83 84 4.452733 CCTCGCCGTCAGTTCCCC 62.453 72.222 0.00 0.00 0.00 4.81
84 85 3.382832 CTCGCCGTCAGTTCCCCT 61.383 66.667 0.00 0.00 0.00 4.79
85 86 3.649277 CTCGCCGTCAGTTCCCCTG 62.649 68.421 0.00 0.00 42.97 4.45
88 89 4.410400 CCGTCAGTTCCCCTGCCC 62.410 72.222 0.00 0.00 41.25 5.36
89 90 4.760047 CGTCAGTTCCCCTGCCCG 62.760 72.222 0.00 0.00 41.25 6.13
90 91 3.319198 GTCAGTTCCCCTGCCCGA 61.319 66.667 0.00 0.00 41.25 5.14
91 92 3.319198 TCAGTTCCCCTGCCCGAC 61.319 66.667 0.00 0.00 41.25 4.79
92 93 4.410400 CAGTTCCCCTGCCCGACC 62.410 72.222 0.00 0.00 33.59 4.79
122 123 4.421479 CAGCGCCTCGTCGTTCCT 62.421 66.667 2.29 0.00 0.00 3.36
123 124 4.117661 AGCGCCTCGTCGTTCCTC 62.118 66.667 2.29 0.00 0.00 3.71
127 128 3.796443 CCTCGTCGTTCCTCGCGA 61.796 66.667 9.26 9.26 42.13 5.87
132 133 3.796443 TCGTTCCTCGCGACCTCG 61.796 66.667 3.71 8.29 43.27 4.63
152 153 3.613689 GGTAGCCGACCGGATCCC 61.614 72.222 9.46 2.05 38.87 3.85
196 197 3.798511 CCTCCCCTTCCCGGCTTC 61.799 72.222 0.00 0.00 0.00 3.86
197 198 3.798511 CTCCCCTTCCCGGCTTCC 61.799 72.222 0.00 0.00 0.00 3.46
224 225 4.760047 CCTACCCTGCGCGCAAGT 62.760 66.667 35.50 33.00 41.68 3.16
225 226 3.188786 CTACCCTGCGCGCAAGTC 61.189 66.667 35.50 4.14 41.68 3.01
226 227 4.752879 TACCCTGCGCGCAAGTCC 62.753 66.667 35.50 3.27 41.68 3.85
230 231 3.349006 CTGCGCGCAAGTCCTGTT 61.349 61.111 35.50 0.00 41.68 3.16
231 232 3.584250 CTGCGCGCAAGTCCTGTTG 62.584 63.158 35.50 16.11 41.68 3.33
236 237 4.043200 GCAAGTCCTGTTGCGCCC 62.043 66.667 4.18 0.00 43.24 6.13
237 238 3.365265 CAAGTCCTGTTGCGCCCC 61.365 66.667 4.18 0.00 0.00 5.80
238 239 3.570212 AAGTCCTGTTGCGCCCCT 61.570 61.111 4.18 0.00 0.00 4.79
239 240 3.850098 AAGTCCTGTTGCGCCCCTG 62.850 63.158 4.18 0.00 0.00 4.45
271 272 4.351054 CCCTCCTGCAAAGCCGGT 62.351 66.667 1.90 0.00 34.54 5.28
272 273 2.282462 CCTCCTGCAAAGCCGGTT 60.282 61.111 1.90 0.00 34.54 4.44
273 274 1.002624 CCTCCTGCAAAGCCGGTTA 60.003 57.895 1.90 0.00 34.54 2.85
274 275 1.026718 CCTCCTGCAAAGCCGGTTAG 61.027 60.000 1.90 0.00 34.54 2.34
275 276 0.321653 CTCCTGCAAAGCCGGTTAGT 60.322 55.000 1.90 0.00 34.54 2.24
276 277 0.321298 TCCTGCAAAGCCGGTTAGTC 60.321 55.000 1.90 0.00 34.54 2.59
277 278 0.605319 CCTGCAAAGCCGGTTAGTCA 60.605 55.000 1.90 0.00 0.00 3.41
278 279 1.453155 CTGCAAAGCCGGTTAGTCAT 58.547 50.000 1.90 0.00 0.00 3.06
279 280 1.398390 CTGCAAAGCCGGTTAGTCATC 59.602 52.381 1.90 0.00 0.00 2.92
280 281 1.003118 TGCAAAGCCGGTTAGTCATCT 59.997 47.619 1.90 0.00 0.00 2.90
281 282 2.084546 GCAAAGCCGGTTAGTCATCTT 58.915 47.619 1.90 0.00 0.00 2.40
282 283 2.096013 GCAAAGCCGGTTAGTCATCTTC 59.904 50.000 1.90 0.00 0.00 2.87
283 284 2.678336 CAAAGCCGGTTAGTCATCTTCC 59.322 50.000 1.90 0.00 0.00 3.46
284 285 0.460311 AGCCGGTTAGTCATCTTCCG 59.540 55.000 1.90 0.00 38.56 4.30
285 286 3.661745 CCGGTTAGTCATCTTCCGG 57.338 57.895 6.55 6.55 45.35 5.14
286 287 0.822164 CCGGTTAGTCATCTTCCGGT 59.178 55.000 12.03 0.00 45.44 5.28
287 288 1.202382 CCGGTTAGTCATCTTCCGGTC 60.202 57.143 12.03 0.00 45.44 4.79
288 289 1.475280 CGGTTAGTCATCTTCCGGTCA 59.525 52.381 0.00 0.00 36.82 4.02
289 290 2.479730 CGGTTAGTCATCTTCCGGTCAG 60.480 54.545 0.00 0.00 36.82 3.51
290 291 2.541556 GTTAGTCATCTTCCGGTCAGC 58.458 52.381 0.00 0.00 0.00 4.26
291 292 0.738975 TAGTCATCTTCCGGTCAGCG 59.261 55.000 0.00 0.00 0.00 5.18
292 293 2.167861 GTCATCTTCCGGTCAGCGC 61.168 63.158 0.00 0.00 0.00 5.92
293 294 3.257561 CATCTTCCGGTCAGCGCG 61.258 66.667 0.00 0.00 0.00 6.86
294 295 4.514577 ATCTTCCGGTCAGCGCGG 62.515 66.667 8.83 0.00 0.00 6.46
303 304 3.997397 TCAGCGCGGCAACCAGTA 61.997 61.111 8.83 0.00 0.00 2.74
304 305 3.490759 CAGCGCGGCAACCAGTAG 61.491 66.667 8.83 0.00 0.00 2.57
307 308 3.047280 CGCGGCAACCAGTAGCAA 61.047 61.111 0.00 0.00 0.00 3.91
308 309 2.561373 GCGGCAACCAGTAGCAAC 59.439 61.111 0.00 0.00 0.00 4.17
309 310 1.966451 GCGGCAACCAGTAGCAACT 60.966 57.895 0.00 0.00 35.91 3.16
321 322 4.803098 AGTAGCAACTGATTTCGTACCT 57.197 40.909 0.00 0.00 33.57 3.08
322 323 5.148651 AGTAGCAACTGATTTCGTACCTT 57.851 39.130 0.00 0.00 33.57 3.50
323 324 6.276832 AGTAGCAACTGATTTCGTACCTTA 57.723 37.500 0.00 0.00 33.57 2.69
324 325 6.694447 AGTAGCAACTGATTTCGTACCTTAA 58.306 36.000 0.00 0.00 33.57 1.85
325 326 7.156673 AGTAGCAACTGATTTCGTACCTTAAA 58.843 34.615 0.00 0.00 33.57 1.52
326 327 6.870971 AGCAACTGATTTCGTACCTTAAAA 57.129 33.333 0.00 0.00 0.00 1.52
327 328 7.448748 AGCAACTGATTTCGTACCTTAAAAT 57.551 32.000 0.00 0.00 0.00 1.82
328 329 8.556213 AGCAACTGATTTCGTACCTTAAAATA 57.444 30.769 0.00 0.00 0.00 1.40
329 330 8.448615 AGCAACTGATTTCGTACCTTAAAATAC 58.551 33.333 0.00 0.00 0.00 1.89
330 331 7.695201 GCAACTGATTTCGTACCTTAAAATACC 59.305 37.037 0.00 0.00 0.00 2.73
331 332 7.854557 ACTGATTTCGTACCTTAAAATACCC 57.145 36.000 0.00 0.00 0.00 3.69
332 333 6.825213 ACTGATTTCGTACCTTAAAATACCCC 59.175 38.462 0.00 0.00 0.00 4.95
333 334 6.719301 TGATTTCGTACCTTAAAATACCCCA 58.281 36.000 0.00 0.00 0.00 4.96
334 335 7.173722 TGATTTCGTACCTTAAAATACCCCAA 58.826 34.615 0.00 0.00 0.00 4.12
335 336 7.835181 TGATTTCGTACCTTAAAATACCCCAAT 59.165 33.333 0.00 0.00 0.00 3.16
336 337 8.598202 ATTTCGTACCTTAAAATACCCCAATT 57.402 30.769 0.00 0.00 0.00 2.32
337 338 8.419922 TTTCGTACCTTAAAATACCCCAATTT 57.580 30.769 0.00 0.00 0.00 1.82
338 339 7.628769 TCGTACCTTAAAATACCCCAATTTC 57.371 36.000 0.00 0.00 0.00 2.17
339 340 7.173722 TCGTACCTTAAAATACCCCAATTTCA 58.826 34.615 0.00 0.00 0.00 2.69
340 341 7.337436 TCGTACCTTAAAATACCCCAATTTCAG 59.663 37.037 0.00 0.00 0.00 3.02
341 342 7.337436 CGTACCTTAAAATACCCCAATTTCAGA 59.663 37.037 0.00 0.00 0.00 3.27
342 343 9.197306 GTACCTTAAAATACCCCAATTTCAGAT 57.803 33.333 0.00 0.00 0.00 2.90
343 344 8.679344 ACCTTAAAATACCCCAATTTCAGATT 57.321 30.769 0.00 0.00 0.00 2.40
344 345 9.111519 ACCTTAAAATACCCCAATTTCAGATTT 57.888 29.630 0.00 0.00 0.00 2.17
348 349 7.675161 AAATACCCCAATTTCAGATTTAGGG 57.325 36.000 0.00 0.00 39.33 3.53
349 350 4.692523 ACCCCAATTTCAGATTTAGGGT 57.307 40.909 0.00 0.00 41.76 4.34
350 351 5.023514 ACCCCAATTTCAGATTTAGGGTT 57.976 39.130 0.00 0.00 44.14 4.11
351 352 5.411493 ACCCCAATTTCAGATTTAGGGTTT 58.589 37.500 0.00 0.00 44.14 3.27
352 353 5.849475 ACCCCAATTTCAGATTTAGGGTTTT 59.151 36.000 0.00 0.00 44.14 2.43
353 354 6.331572 ACCCCAATTTCAGATTTAGGGTTTTT 59.668 34.615 0.00 0.00 44.14 1.94
354 355 6.878923 CCCCAATTTCAGATTTAGGGTTTTTC 59.121 38.462 0.00 0.00 32.90 2.29
355 356 7.256655 CCCCAATTTCAGATTTAGGGTTTTTCT 60.257 37.037 0.00 0.00 32.90 2.52
356 357 8.156820 CCCAATTTCAGATTTAGGGTTTTTCTT 58.843 33.333 0.00 0.00 0.00 2.52
357 358 9.559732 CCAATTTCAGATTTAGGGTTTTTCTTT 57.440 29.630 0.00 0.00 0.00 2.52
378 379 5.359194 TTTTTACCCCAATTTTCTGCACA 57.641 34.783 0.00 0.00 0.00 4.57
379 380 5.559148 TTTTACCCCAATTTTCTGCACAT 57.441 34.783 0.00 0.00 0.00 3.21
380 381 4.533919 TTACCCCAATTTTCTGCACATG 57.466 40.909 0.00 0.00 0.00 3.21
381 382 2.607499 ACCCCAATTTTCTGCACATGA 58.393 42.857 0.00 0.00 0.00 3.07
382 383 2.971330 ACCCCAATTTTCTGCACATGAA 59.029 40.909 0.00 0.00 0.00 2.57
383 384 3.244181 ACCCCAATTTTCTGCACATGAAC 60.244 43.478 0.00 0.00 0.00 3.18
384 385 3.244146 CCCCAATTTTCTGCACATGAACA 60.244 43.478 0.00 0.00 0.00 3.18
385 386 3.742369 CCCAATTTTCTGCACATGAACAC 59.258 43.478 0.00 0.00 0.00 3.32
386 387 3.426191 CCAATTTTCTGCACATGAACACG 59.574 43.478 0.00 0.00 0.00 4.49
387 388 3.988379 ATTTTCTGCACATGAACACGT 57.012 38.095 0.00 0.00 0.00 4.49
388 389 5.211454 CAATTTTCTGCACATGAACACGTA 58.789 37.500 0.00 0.00 0.00 3.57
389 390 3.870723 TTTCTGCACATGAACACGTAC 57.129 42.857 0.00 0.00 0.00 3.67
390 391 2.517650 TCTGCACATGAACACGTACA 57.482 45.000 0.00 0.00 0.00 2.90
391 392 3.038788 TCTGCACATGAACACGTACAT 57.961 42.857 0.00 0.00 0.00 2.29
392 393 4.181309 TCTGCACATGAACACGTACATA 57.819 40.909 0.00 0.00 0.00 2.29
393 394 4.561105 TCTGCACATGAACACGTACATAA 58.439 39.130 0.00 0.00 0.00 1.90
394 395 5.175127 TCTGCACATGAACACGTACATAAT 58.825 37.500 0.00 0.00 0.00 1.28
395 396 5.641636 TCTGCACATGAACACGTACATAATT 59.358 36.000 0.00 0.00 0.00 1.40
396 397 6.148645 TCTGCACATGAACACGTACATAATTT 59.851 34.615 0.00 0.00 0.00 1.82
397 398 6.673106 TGCACATGAACACGTACATAATTTT 58.327 32.000 0.00 0.00 0.00 1.82
398 399 6.580416 TGCACATGAACACGTACATAATTTTG 59.420 34.615 0.00 0.00 0.00 2.44
399 400 6.452350 GCACATGAACACGTACATAATTTTGC 60.452 38.462 0.00 0.00 0.00 3.68
400 401 6.580416 CACATGAACACGTACATAATTTTGCA 59.420 34.615 0.00 0.00 0.00 4.08
401 402 6.580791 ACATGAACACGTACATAATTTTGCAC 59.419 34.615 0.00 0.00 0.00 4.57
402 403 6.061231 TGAACACGTACATAATTTTGCACA 57.939 33.333 0.00 0.00 0.00 4.57
403 404 6.495706 TGAACACGTACATAATTTTGCACAA 58.504 32.000 0.00 0.00 0.00 3.33
404 405 6.415280 TGAACACGTACATAATTTTGCACAAC 59.585 34.615 0.00 0.00 0.00 3.32
405 406 5.822278 ACACGTACATAATTTTGCACAACA 58.178 33.333 0.00 0.00 0.00 3.33
406 407 6.442952 ACACGTACATAATTTTGCACAACAT 58.557 32.000 0.00 0.00 0.00 2.71
407 408 6.920758 ACACGTACATAATTTTGCACAACATT 59.079 30.769 0.00 0.92 0.00 2.71
408 409 7.436673 ACACGTACATAATTTTGCACAACATTT 59.563 29.630 0.53 0.00 0.00 2.32
409 410 8.906693 CACGTACATAATTTTGCACAACATTTA 58.093 29.630 0.53 0.00 0.00 1.40
410 411 9.632807 ACGTACATAATTTTGCACAACATTTAT 57.367 25.926 0.53 0.00 0.00 1.40
411 412 9.884299 CGTACATAATTTTGCACAACATTTATG 57.116 29.630 12.60 12.60 34.89 1.90
412 413 9.687717 GTACATAATTTTGCACAACATTTATGC 57.312 29.630 13.53 0.00 39.88 3.14
413 414 7.750769 ACATAATTTTGCACAACATTTATGCC 58.249 30.769 13.53 0.00 38.63 4.40
414 415 7.607223 ACATAATTTTGCACAACATTTATGCCT 59.393 29.630 13.53 0.00 38.63 4.75
415 416 6.484818 AATTTTGCACAACATTTATGCCTC 57.515 33.333 0.00 0.00 38.63 4.70
416 417 4.597404 TTTGCACAACATTTATGCCTCA 57.403 36.364 0.00 0.00 38.63 3.86
417 418 4.597404 TTGCACAACATTTATGCCTCAA 57.403 36.364 0.00 0.00 38.63 3.02
418 419 4.804868 TGCACAACATTTATGCCTCAAT 57.195 36.364 0.00 0.00 38.63 2.57
419 420 5.149973 TGCACAACATTTATGCCTCAATT 57.850 34.783 0.00 0.00 38.63 2.32
420 421 6.278172 TGCACAACATTTATGCCTCAATTA 57.722 33.333 0.00 0.00 38.63 1.40
421 422 6.331845 TGCACAACATTTATGCCTCAATTAG 58.668 36.000 0.00 0.00 38.63 1.73
422 423 5.232838 GCACAACATTTATGCCTCAATTAGC 59.767 40.000 0.00 0.00 33.06 3.09
423 424 6.567050 CACAACATTTATGCCTCAATTAGCT 58.433 36.000 0.00 0.00 0.00 3.32
424 425 7.037438 CACAACATTTATGCCTCAATTAGCTT 58.963 34.615 0.00 0.00 0.00 3.74
425 426 7.546667 CACAACATTTATGCCTCAATTAGCTTT 59.453 33.333 0.00 0.00 0.00 3.51
426 427 8.748412 ACAACATTTATGCCTCAATTAGCTTTA 58.252 29.630 0.00 0.00 0.00 1.85
427 428 9.754382 CAACATTTATGCCTCAATTAGCTTTAT 57.246 29.630 0.00 0.00 0.00 1.40
429 430 9.754382 ACATTTATGCCTCAATTAGCTTTATTG 57.246 29.630 12.62 12.62 34.94 1.90
430 431 9.970395 CATTTATGCCTCAATTAGCTTTATTGA 57.030 29.630 17.79 17.79 39.12 2.57
483 484 8.525290 AATATGTAGGCTTCTTTATGCAAACT 57.475 30.769 0.00 0.00 0.00 2.66
484 485 5.627499 TGTAGGCTTCTTTATGCAAACTG 57.373 39.130 0.00 0.00 0.00 3.16
485 486 5.312895 TGTAGGCTTCTTTATGCAAACTGA 58.687 37.500 0.00 0.00 0.00 3.41
486 487 5.412594 TGTAGGCTTCTTTATGCAAACTGAG 59.587 40.000 0.00 0.00 0.00 3.35
487 488 4.655963 AGGCTTCTTTATGCAAACTGAGA 58.344 39.130 0.00 0.00 0.00 3.27
488 489 5.259632 AGGCTTCTTTATGCAAACTGAGAT 58.740 37.500 0.00 0.00 0.00 2.75
489 490 5.713861 AGGCTTCTTTATGCAAACTGAGATT 59.286 36.000 0.00 0.00 0.00 2.40
490 491 6.210185 AGGCTTCTTTATGCAAACTGAGATTT 59.790 34.615 0.00 0.00 0.00 2.17
491 492 7.394359 AGGCTTCTTTATGCAAACTGAGATTTA 59.606 33.333 0.00 0.00 0.00 1.40
492 493 8.028938 GGCTTCTTTATGCAAACTGAGATTTAA 58.971 33.333 0.00 0.00 0.00 1.52
493 494 9.578439 GCTTCTTTATGCAAACTGAGATTTAAT 57.422 29.630 0.00 0.00 0.00 1.40
502 503 9.985730 TGCAAACTGAGATTTAATTGAGAATTT 57.014 25.926 0.00 0.00 32.38 1.82
575 576 7.867305 TTGGTAATTTGTTAGAACTGTCACA 57.133 32.000 0.00 0.00 0.00 3.58
576 577 8.458573 TTGGTAATTTGTTAGAACTGTCACAT 57.541 30.769 0.00 0.00 0.00 3.21
577 578 7.870826 TGGTAATTTGTTAGAACTGTCACATG 58.129 34.615 0.00 0.00 0.00 3.21
578 579 7.500892 TGGTAATTTGTTAGAACTGTCACATGT 59.499 33.333 0.00 0.00 0.00 3.21
579 580 8.015658 GGTAATTTGTTAGAACTGTCACATGTC 58.984 37.037 0.00 0.00 0.00 3.06
580 581 7.566760 AATTTGTTAGAACTGTCACATGTCA 57.433 32.000 0.00 0.00 0.00 3.58
581 582 7.750229 ATTTGTTAGAACTGTCACATGTCAT 57.250 32.000 0.00 0.00 0.00 3.06
582 583 6.544038 TTGTTAGAACTGTCACATGTCATG 57.456 37.500 11.41 11.41 0.00 3.07
583 584 5.610398 TGTTAGAACTGTCACATGTCATGT 58.390 37.500 12.87 12.87 46.22 3.21
584 585 6.054941 TGTTAGAACTGTCACATGTCATGTT 58.945 36.000 15.98 0.30 42.70 2.71
585 586 6.202762 TGTTAGAACTGTCACATGTCATGTTC 59.797 38.462 15.98 9.92 42.70 3.18
586 587 4.965814 AGAACTGTCACATGTCATGTTCT 58.034 39.130 15.98 19.02 42.70 3.01
587 588 5.371526 AGAACTGTCACATGTCATGTTCTT 58.628 37.500 15.98 3.39 42.70 2.52
588 589 6.524734 AGAACTGTCACATGTCATGTTCTTA 58.475 36.000 15.98 2.80 42.70 2.10
589 590 7.164122 AGAACTGTCACATGTCATGTTCTTAT 58.836 34.615 15.98 1.62 42.70 1.73
590 591 8.314021 AGAACTGTCACATGTCATGTTCTTATA 58.686 33.333 15.98 0.69 42.70 0.98
591 592 8.846943 AACTGTCACATGTCATGTTCTTATAA 57.153 30.769 15.98 0.00 42.70 0.98
592 593 8.256611 ACTGTCACATGTCATGTTCTTATAAC 57.743 34.615 15.98 6.65 42.70 1.89
593 594 7.877612 ACTGTCACATGTCATGTTCTTATAACA 59.122 33.333 15.98 10.16 42.70 2.41
594 595 8.791327 TGTCACATGTCATGTTCTTATAACAT 57.209 30.769 15.98 0.00 42.70 2.71
595 596 9.230122 TGTCACATGTCATGTTCTTATAACATT 57.770 29.630 15.98 0.00 42.70 2.71
605 606 9.260002 CATGTTCTTATAACATTATTTTGGGGC 57.740 33.333 0.74 0.00 38.69 5.80
606 607 7.484975 TGTTCTTATAACATTATTTTGGGGCG 58.515 34.615 0.00 0.00 0.00 6.13
607 608 6.642707 TCTTATAACATTATTTTGGGGCGG 57.357 37.500 0.00 0.00 0.00 6.13
608 609 6.366340 TCTTATAACATTATTTTGGGGCGGA 58.634 36.000 0.00 0.00 0.00 5.54
609 610 4.929819 ATAACATTATTTTGGGGCGGAC 57.070 40.909 0.00 0.00 0.00 4.79
610 611 1.480789 ACATTATTTTGGGGCGGACC 58.519 50.000 0.00 0.00 39.11 4.46
611 612 1.272760 ACATTATTTTGGGGCGGACCA 60.273 47.619 0.36 0.00 42.91 4.02
612 613 1.136110 CATTATTTTGGGGCGGACCAC 59.864 52.381 0.36 0.00 41.03 4.16
613 614 0.612453 TTATTTTGGGGCGGACCACC 60.612 55.000 0.36 0.00 39.41 4.61
621 622 4.736896 GCGGACCACCCTGTCGTC 62.737 72.222 0.00 0.00 36.07 4.20
622 623 3.299977 CGGACCACCCTGTCGTCA 61.300 66.667 0.00 0.00 36.07 4.35
623 624 2.863346 CGGACCACCCTGTCGTCAA 61.863 63.158 0.00 0.00 36.07 3.18
624 625 1.448497 GGACCACCCTGTCGTCAAA 59.552 57.895 0.00 0.00 36.07 2.69
625 626 0.036306 GGACCACCCTGTCGTCAAAT 59.964 55.000 0.00 0.00 36.07 2.32
626 627 1.156736 GACCACCCTGTCGTCAAATG 58.843 55.000 0.00 0.00 0.00 2.32
627 628 0.889186 ACCACCCTGTCGTCAAATGC 60.889 55.000 0.00 0.00 0.00 3.56
628 629 0.606401 CCACCCTGTCGTCAAATGCT 60.606 55.000 0.00 0.00 0.00 3.79
629 630 1.338674 CCACCCTGTCGTCAAATGCTA 60.339 52.381 0.00 0.00 0.00 3.49
630 631 2.002586 CACCCTGTCGTCAAATGCTAG 58.997 52.381 0.00 0.00 0.00 3.42
631 632 1.009829 CCCTGTCGTCAAATGCTAGC 58.990 55.000 8.10 8.10 0.00 3.42
632 633 1.406069 CCCTGTCGTCAAATGCTAGCT 60.406 52.381 17.23 0.00 0.00 3.32
633 634 1.929836 CCTGTCGTCAAATGCTAGCTC 59.070 52.381 17.23 0.00 0.00 4.09
634 635 1.929836 CTGTCGTCAAATGCTAGCTCC 59.070 52.381 17.23 0.00 0.00 4.70
635 636 0.924090 GTCGTCAAATGCTAGCTCCG 59.076 55.000 17.23 8.79 0.00 4.63
636 637 0.806102 TCGTCAAATGCTAGCTCCGC 60.806 55.000 17.23 0.00 0.00 5.54
637 638 1.766143 CGTCAAATGCTAGCTCCGCC 61.766 60.000 17.23 0.00 0.00 6.13
638 639 0.744414 GTCAAATGCTAGCTCCGCCA 60.744 55.000 17.23 0.00 0.00 5.69
639 640 0.744414 TCAAATGCTAGCTCCGCCAC 60.744 55.000 17.23 0.00 0.00 5.01
640 641 0.745845 CAAATGCTAGCTCCGCCACT 60.746 55.000 17.23 0.00 0.00 4.00
641 642 0.830648 AAATGCTAGCTCCGCCACTA 59.169 50.000 17.23 0.00 0.00 2.74
642 643 1.051812 AATGCTAGCTCCGCCACTAT 58.948 50.000 17.23 0.00 0.00 2.12
643 644 1.924731 ATGCTAGCTCCGCCACTATA 58.075 50.000 17.23 0.00 0.00 1.31
647 648 0.895530 TAGCTCCGCCACTATATGCC 59.104 55.000 0.00 0.00 0.00 4.40
668 670 1.101331 GCTGCTGCTCTTTAATGCCT 58.899 50.000 8.53 0.00 36.03 4.75
681 683 7.042389 GCTCTTTAATGCCTGTAGATTGTACTC 60.042 40.741 0.00 0.00 0.00 2.59
727 729 3.492102 TCTGCTTCAGTTTAGGTGCTT 57.508 42.857 0.00 0.00 32.61 3.91
844 846 1.824230 TGCTTGCTGTTTCCTGTTTGT 59.176 42.857 0.00 0.00 0.00 2.83
873 875 7.832187 TGCTTGCTGTTAGGTTAGGTAAATATT 59.168 33.333 0.00 0.00 0.00 1.28
903 905 1.375396 CCATCCCGCTTGTCGTGAA 60.375 57.895 0.00 0.00 36.19 3.18
921 923 3.558418 GTGAACTTGGTAAGCACGAAAGA 59.442 43.478 0.00 0.00 0.00 2.52
966 968 0.106719 CTCGGAAGGCTCTCTCCTCT 60.107 60.000 2.43 0.00 34.82 3.69
968 970 0.459489 CGGAAGGCTCTCTCCTCTTG 59.541 60.000 2.43 0.00 34.82 3.02
1236 1293 2.203728 ACCACCGTGCAGGACCTA 60.204 61.111 8.24 0.00 45.00 3.08
1360 1417 1.604438 CCAACGTCGTCATTGAGGTCA 60.604 52.381 0.00 0.00 36.05 4.02
1476 2838 6.183361 ACTGGATGATCAAGCTATGAGTTCAT 60.183 38.462 0.00 11.50 42.53 2.57
1656 3031 5.316987 AGCTGCATTTACTAAGGTTCAGTT 58.683 37.500 1.02 0.00 0.00 3.16
1657 3032 5.182001 AGCTGCATTTACTAAGGTTCAGTTG 59.818 40.000 1.02 0.00 0.00 3.16
1859 3323 8.208224 TCATGATGTTACCGAACCTATATTGTT 58.792 33.333 0.00 0.00 34.38 2.83
1962 3429 4.872124 TCTGATGCATGAGTGTGTATTCAC 59.128 41.667 13.11 0.00 44.08 3.18
1965 3432 6.585416 TGATGCATGAGTGTGTATTCACTAT 58.415 36.000 2.46 0.00 46.81 2.12
2192 3659 1.816835 TCATCGTACAAGGAGCGTCTT 59.183 47.619 0.00 0.00 0.00 3.01
2298 3765 2.126228 TCGCGTCAACGTCCATCC 60.126 61.111 5.77 0.00 42.22 3.51
2664 4294 1.173043 CTGCCGTGCCTTTTGGATTA 58.827 50.000 0.00 0.00 44.07 1.75
2720 4350 3.368531 GGTGTTGTTTTACCACTGGCAAA 60.369 43.478 0.00 0.00 36.94 3.68
2817 4447 3.205056 TGGGTGGAATATCATCCTTGCTT 59.795 43.478 0.00 0.00 38.69 3.91
2916 4546 4.037927 CTGTTCCAGGGAGGGATTACTTA 58.962 47.826 0.00 0.00 36.67 2.24
3006 4636 2.300433 GCTGGAATACATGGTCATGCA 58.700 47.619 10.53 0.00 42.39 3.96
3161 4791 4.320348 CGAGGTATGTTTCGATAGTCCTCC 60.320 50.000 12.69 1.47 39.06 4.30
3163 4793 4.585162 AGGTATGTTTCGATAGTCCTCCTG 59.415 45.833 0.00 0.00 37.40 3.86
3185 4818 6.127253 CCTGAATTTCCTTTGCACCAGATTAT 60.127 38.462 0.00 0.00 0.00 1.28
3360 4996 2.039084 CCTGCCACCAAGTATCTATCCC 59.961 54.545 0.00 0.00 0.00 3.85
3391 5027 2.793946 CATCCCTTTTGCCTCGCG 59.206 61.111 0.00 0.00 0.00 5.87
3392 5028 1.745115 CATCCCTTTTGCCTCGCGA 60.745 57.895 9.26 9.26 0.00 5.87
3393 5029 1.745489 ATCCCTTTTGCCTCGCGAC 60.745 57.895 3.71 0.00 0.00 5.19
3394 5030 3.431725 CCCTTTTGCCTCGCGACC 61.432 66.667 3.71 0.00 0.00 4.79
3395 5031 3.788766 CCTTTTGCCTCGCGACCG 61.789 66.667 3.71 0.00 0.00 4.79
3396 5032 4.445545 CTTTTGCCTCGCGACCGC 62.446 66.667 3.71 10.93 37.85 5.68
3397 5033 4.980805 TTTTGCCTCGCGACCGCT 62.981 61.111 20.54 0.00 39.32 5.52
3398 5034 4.980805 TTTGCCTCGCGACCGCTT 62.981 61.111 20.54 0.00 39.32 4.68
3412 5059 2.188207 GCTTCGCTCCCCCTTCTC 59.812 66.667 0.00 0.00 0.00 2.87
3533 5186 1.418373 GTTTTTGCACATCTTCCGGC 58.582 50.000 0.00 0.00 0.00 6.13
3534 5187 1.035923 TTTTTGCACATCTTCCGGCA 58.964 45.000 0.00 0.00 0.00 5.69
3535 5188 1.255882 TTTTGCACATCTTCCGGCAT 58.744 45.000 0.00 0.00 35.98 4.40
3536 5189 1.255882 TTTGCACATCTTCCGGCATT 58.744 45.000 0.00 0.00 35.98 3.56
3537 5190 0.527113 TTGCACATCTTCCGGCATTG 59.473 50.000 0.00 0.00 35.98 2.82
3538 5191 0.608856 TGCACATCTTCCGGCATTGT 60.609 50.000 0.00 0.00 0.00 2.71
3539 5192 1.339535 TGCACATCTTCCGGCATTGTA 60.340 47.619 0.00 0.00 0.00 2.41
3540 5193 1.331756 GCACATCTTCCGGCATTGTAG 59.668 52.381 0.00 0.00 0.00 2.74
3541 5194 1.331756 CACATCTTCCGGCATTGTAGC 59.668 52.381 0.00 0.00 0.00 3.58
3542 5195 1.065491 ACATCTTCCGGCATTGTAGCA 60.065 47.619 0.00 0.00 35.83 3.49
3543 5196 2.016318 CATCTTCCGGCATTGTAGCAA 58.984 47.619 0.00 0.00 35.83 3.91
3544 5197 1.448985 TCTTCCGGCATTGTAGCAAC 58.551 50.000 0.00 0.00 35.83 4.17
3545 5198 0.096976 CTTCCGGCATTGTAGCAACG 59.903 55.000 0.00 0.00 35.83 4.10
3546 5199 1.917782 TTCCGGCATTGTAGCAACGC 61.918 55.000 0.00 0.00 35.83 4.84
3547 5200 2.685829 CCGGCATTGTAGCAACGCA 61.686 57.895 2.51 0.00 35.83 5.24
3548 5201 1.429021 CGGCATTGTAGCAACGCAT 59.571 52.632 2.51 0.00 35.83 4.73
3549 5202 0.179166 CGGCATTGTAGCAACGCATT 60.179 50.000 2.51 0.00 35.83 3.56
3550 5203 1.270971 GGCATTGTAGCAACGCATTG 58.729 50.000 2.51 0.00 38.99 2.82
3558 5211 4.459331 CAACGCATTGCCGGACGG 62.459 66.667 5.05 6.35 38.57 4.79
3563 5216 4.402528 CATTGCCGGACGGGGACA 62.403 66.667 5.05 0.00 34.88 4.02
3564 5217 4.096003 ATTGCCGGACGGGGACAG 62.096 66.667 5.05 0.00 34.88 3.51
3569 5222 4.143333 CGGACGGGGACAGCGATT 62.143 66.667 0.00 0.00 0.00 3.34
3570 5223 2.511600 GGACGGGGACAGCGATTG 60.512 66.667 0.00 0.00 0.00 2.67
3571 5224 3.195698 GACGGGGACAGCGATTGC 61.196 66.667 0.00 0.00 43.24 3.56
3581 5234 0.159345 CAGCGATTGCGTTTTTGCAC 59.841 50.000 0.00 0.00 46.25 4.57
3582 5235 0.248825 AGCGATTGCGTTTTTGCACA 60.249 45.000 0.00 0.00 46.25 4.57
3583 5236 0.783579 GCGATTGCGTTTTTGCACAT 59.216 45.000 0.00 0.00 46.25 3.21
3584 5237 1.201693 GCGATTGCGTTTTTGCACATC 60.202 47.619 0.00 0.00 46.25 3.06
3609 5263 1.402720 GGCATTGTAGCAACGCATTGT 60.403 47.619 2.51 0.00 38.17 2.71
3693 5358 4.819761 ACGATGGATGCGCACGCT 62.820 61.111 14.90 0.00 42.51 5.07
3750 5415 1.909532 GCGACGTCGGGATTATTATCG 59.090 52.381 36.13 10.00 40.23 2.92
3773 5438 1.310904 CCCGGAACAGAAAAACCGAA 58.689 50.000 0.73 0.00 46.94 4.30
3814 5480 6.213677 GTGATGCTGGTAGTCACGATTATTA 58.786 40.000 0.00 0.00 33.73 0.98
3817 5483 4.403113 TGCTGGTAGTCACGATTATTACCA 59.597 41.667 0.00 0.06 40.93 3.25
3819 5485 5.989777 GCTGGTAGTCACGATTATTACCATT 59.010 40.000 9.76 0.00 41.93 3.16
3820 5486 7.149973 GCTGGTAGTCACGATTATTACCATTA 58.850 38.462 9.76 0.00 41.93 1.90
3821 5487 7.654520 GCTGGTAGTCACGATTATTACCATTAA 59.345 37.037 9.76 0.00 41.93 1.40
3871 5549 2.035425 GCGATTACGTACGGTTGCTAAC 60.035 50.000 21.06 0.00 41.98 2.34
3902 5584 0.039617 CAGCCAAAACGAATTCGGCA 60.040 50.000 29.79 0.00 45.47 5.69
3903 5585 0.039527 AGCCAAAACGAATTCGGCAC 60.040 50.000 29.79 13.63 45.47 5.01
4058 5757 4.552365 ATGTCTGGGCGCCGGATG 62.552 66.667 22.54 10.30 41.38 3.51
4094 5796 1.835531 ACGGGTGATTAGGGTAAGTGG 59.164 52.381 0.00 0.00 0.00 4.00
4153 5855 6.838382 AGCTACTAATCACCCCGAATAATTT 58.162 36.000 0.00 0.00 0.00 1.82
4157 5859 3.570912 ATCACCCCGAATAATTTCCGT 57.429 42.857 0.00 0.00 0.00 4.69
4158 5860 3.353370 TCACCCCGAATAATTTCCGTT 57.647 42.857 0.00 0.00 0.00 4.44
4159 5861 4.484537 TCACCCCGAATAATTTCCGTTA 57.515 40.909 0.00 0.00 0.00 3.18
4188 5890 3.334604 CCTCCTATGGGCAGGCAA 58.665 61.111 0.00 0.00 35.49 4.52
4189 5891 1.614711 CCTCCTATGGGCAGGCAAA 59.385 57.895 0.00 0.00 35.49 3.68
4190 5892 0.033208 CCTCCTATGGGCAGGCAAAA 60.033 55.000 0.00 0.00 35.49 2.44
4191 5893 1.619432 CCTCCTATGGGCAGGCAAAAA 60.619 52.381 0.00 0.00 35.49 1.94
4192 5894 2.391678 CTCCTATGGGCAGGCAAAAAT 58.608 47.619 0.00 0.00 35.49 1.82
4193 5895 2.101917 CTCCTATGGGCAGGCAAAAATG 59.898 50.000 0.00 0.00 35.49 2.32
4194 5896 1.832998 CCTATGGGCAGGCAAAAATGT 59.167 47.619 0.00 0.00 0.00 2.71
4195 5897 2.159057 CCTATGGGCAGGCAAAAATGTC 60.159 50.000 0.00 0.00 0.00 3.06
4196 5898 0.247185 ATGGGCAGGCAAAAATGTCG 59.753 50.000 0.00 0.00 0.00 4.35
4197 5899 1.112315 TGGGCAGGCAAAAATGTCGT 61.112 50.000 0.00 0.00 0.00 4.34
4198 5900 0.667184 GGGCAGGCAAAAATGTCGTG 60.667 55.000 0.00 0.00 0.00 4.35
4199 5901 0.667184 GGCAGGCAAAAATGTCGTGG 60.667 55.000 0.00 0.00 0.00 4.94
4200 5902 0.667184 GCAGGCAAAAATGTCGTGGG 60.667 55.000 0.00 0.00 0.00 4.61
4201 5903 0.038343 CAGGCAAAAATGTCGTGGGG 60.038 55.000 0.00 0.00 0.00 4.96
4202 5904 0.469144 AGGCAAAAATGTCGTGGGGT 60.469 50.000 0.00 0.00 0.00 4.95
4203 5905 0.391228 GGCAAAAATGTCGTGGGGTT 59.609 50.000 0.00 0.00 0.00 4.11
4204 5906 1.202592 GGCAAAAATGTCGTGGGGTTT 60.203 47.619 0.00 0.00 0.00 3.27
4205 5907 2.131972 GCAAAAATGTCGTGGGGTTTC 58.868 47.619 0.00 0.00 0.00 2.78
4206 5908 2.223947 GCAAAAATGTCGTGGGGTTTCT 60.224 45.455 0.00 0.00 0.00 2.52
4207 5909 3.380142 CAAAAATGTCGTGGGGTTTCTG 58.620 45.455 0.00 0.00 0.00 3.02
4208 5910 2.649531 AAATGTCGTGGGGTTTCTGA 57.350 45.000 0.00 0.00 0.00 3.27
4209 5911 2.649531 AATGTCGTGGGGTTTCTGAA 57.350 45.000 0.00 0.00 0.00 3.02
4210 5912 2.879103 ATGTCGTGGGGTTTCTGAAT 57.121 45.000 0.00 0.00 0.00 2.57
4211 5913 2.649531 TGTCGTGGGGTTTCTGAATT 57.350 45.000 0.00 0.00 0.00 2.17
4212 5914 3.773418 TGTCGTGGGGTTTCTGAATTA 57.227 42.857 0.00 0.00 0.00 1.40
4213 5915 4.295141 TGTCGTGGGGTTTCTGAATTAT 57.705 40.909 0.00 0.00 0.00 1.28
4214 5916 5.423704 TGTCGTGGGGTTTCTGAATTATA 57.576 39.130 0.00 0.00 0.00 0.98
4215 5917 5.806818 TGTCGTGGGGTTTCTGAATTATAA 58.193 37.500 0.00 0.00 0.00 0.98
4216 5918 6.419791 TGTCGTGGGGTTTCTGAATTATAAT 58.580 36.000 0.00 0.00 0.00 1.28
4217 5919 6.317642 TGTCGTGGGGTTTCTGAATTATAATG 59.682 38.462 0.00 0.00 0.00 1.90
4218 5920 5.825679 TCGTGGGGTTTCTGAATTATAATGG 59.174 40.000 0.00 0.00 0.00 3.16
4219 5921 5.825679 CGTGGGGTTTCTGAATTATAATGGA 59.174 40.000 0.00 0.00 0.00 3.41
4220 5922 6.320164 CGTGGGGTTTCTGAATTATAATGGAA 59.680 38.462 0.00 2.34 0.00 3.53
4221 5923 7.489160 GTGGGGTTTCTGAATTATAATGGAAC 58.511 38.462 0.00 0.00 0.00 3.62
4255 5957 9.915629 TTGTGTAAATAATACGAATTTTTGCCT 57.084 25.926 0.00 0.00 0.00 4.75
4256 5958 9.347934 TGTGTAAATAATACGAATTTTTGCCTG 57.652 29.630 0.00 0.00 0.00 4.85
4257 5959 8.318167 GTGTAAATAATACGAATTTTTGCCTGC 58.682 33.333 0.00 0.00 0.00 4.85
4258 5960 6.902224 AAATAATACGAATTTTTGCCTGCC 57.098 33.333 0.00 0.00 0.00 4.85
4259 5961 2.959507 ATACGAATTTTTGCCTGCCC 57.040 45.000 0.00 0.00 0.00 5.36
4260 5962 1.621992 TACGAATTTTTGCCTGCCCA 58.378 45.000 0.00 0.00 0.00 5.36
4261 5963 0.975887 ACGAATTTTTGCCTGCCCAT 59.024 45.000 0.00 0.00 0.00 4.00
4262 5964 1.347378 ACGAATTTTTGCCTGCCCATT 59.653 42.857 0.00 0.00 0.00 3.16
4263 5965 2.564947 ACGAATTTTTGCCTGCCCATTA 59.435 40.909 0.00 0.00 0.00 1.90
4264 5966 3.197549 ACGAATTTTTGCCTGCCCATTAT 59.802 39.130 0.00 0.00 0.00 1.28
4265 5967 4.404073 ACGAATTTTTGCCTGCCCATTATA 59.596 37.500 0.00 0.00 0.00 0.98
4266 5968 5.105146 ACGAATTTTTGCCTGCCCATTATAA 60.105 36.000 0.00 0.00 0.00 0.98
4267 5969 5.814705 CGAATTTTTGCCTGCCCATTATAAA 59.185 36.000 0.00 0.00 0.00 1.40
4268 5970 6.018832 CGAATTTTTGCCTGCCCATTATAAAG 60.019 38.462 0.00 0.00 0.00 1.85
4269 5971 5.753721 TTTTTGCCTGCCCATTATAAAGT 57.246 34.783 0.00 0.00 0.00 2.66
4270 5972 5.337578 TTTTGCCTGCCCATTATAAAGTC 57.662 39.130 0.00 0.00 0.00 3.01
4271 5973 2.944129 TGCCTGCCCATTATAAAGTCC 58.056 47.619 0.00 0.00 0.00 3.85
4272 5974 2.243478 TGCCTGCCCATTATAAAGTCCA 59.757 45.455 0.00 0.00 0.00 4.02
4273 5975 3.117169 TGCCTGCCCATTATAAAGTCCAT 60.117 43.478 0.00 0.00 0.00 3.41
4274 5976 3.507622 GCCTGCCCATTATAAAGTCCATC 59.492 47.826 0.00 0.00 0.00 3.51
4275 5977 4.728772 CCTGCCCATTATAAAGTCCATCA 58.271 43.478 0.00 0.00 0.00 3.07
4276 5978 5.139727 CCTGCCCATTATAAAGTCCATCAA 58.860 41.667 0.00 0.00 0.00 2.57
4277 5979 5.598005 CCTGCCCATTATAAAGTCCATCAAA 59.402 40.000 0.00 0.00 0.00 2.69
4278 5980 6.098124 CCTGCCCATTATAAAGTCCATCAAAA 59.902 38.462 0.00 0.00 0.00 2.44
4279 5981 7.364585 CCTGCCCATTATAAAGTCCATCAAAAA 60.365 37.037 0.00 0.00 0.00 1.94
4280 5982 8.088463 TGCCCATTATAAAGTCCATCAAAAAT 57.912 30.769 0.00 0.00 0.00 1.82
4281 5983 8.547173 TGCCCATTATAAAGTCCATCAAAAATT 58.453 29.630 0.00 0.00 0.00 1.82
4299 6001 7.628769 AAAAATTATTTTTGCCTGCCCATAG 57.371 32.000 13.99 0.00 41.04 2.23
4300 6002 4.961438 ATTATTTTTGCCTGCCCATAGG 57.039 40.909 0.00 0.00 40.95 2.57
4301 6003 2.548464 ATTTTTGCCTGCCCATAGGA 57.452 45.000 0.00 0.00 40.42 2.94
4302 6004 1.851304 TTTTTGCCTGCCCATAGGAG 58.149 50.000 0.00 0.00 40.42 3.69
4303 6005 0.033208 TTTTGCCTGCCCATAGGAGG 60.033 55.000 0.00 0.00 40.42 4.30
4318 6020 8.421249 CCCATAGGAGGCATTATAATTGAAAA 57.579 34.615 0.00 0.00 33.47 2.29
4319 6021 8.526147 CCCATAGGAGGCATTATAATTGAAAAG 58.474 37.037 0.00 0.00 33.47 2.27
4320 6022 9.082313 CCATAGGAGGCATTATAATTGAAAAGT 57.918 33.333 0.00 0.00 0.00 2.66
4322 6024 7.588497 AGGAGGCATTATAATTGAAAAGTCC 57.412 36.000 0.00 0.00 0.00 3.85
4323 6025 7.125391 AGGAGGCATTATAATTGAAAAGTCCA 58.875 34.615 0.00 0.00 0.00 4.02
4324 6026 7.068716 AGGAGGCATTATAATTGAAAAGTCCAC 59.931 37.037 0.00 0.00 0.00 4.02
4325 6027 6.795399 AGGCATTATAATTGAAAAGTCCACG 58.205 36.000 0.00 0.00 0.00 4.94
4326 6028 6.601613 AGGCATTATAATTGAAAAGTCCACGA 59.398 34.615 0.00 0.00 0.00 4.35
4327 6029 6.691388 GGCATTATAATTGAAAAGTCCACGAC 59.309 38.462 0.00 0.00 0.00 4.34
4328 6030 7.247728 GCATTATAATTGAAAAGTCCACGACA 58.752 34.615 0.00 0.00 34.60 4.35
4329 6031 7.915397 GCATTATAATTGAAAAGTCCACGACAT 59.085 33.333 0.00 0.00 34.60 3.06
4330 6032 9.787532 CATTATAATTGAAAAGTCCACGACATT 57.212 29.630 0.00 0.00 34.60 2.71
4334 6036 6.826893 ATTGAAAAGTCCACGACATTTTTG 57.173 33.333 0.00 0.00 34.36 2.44
4335 6037 5.568685 TGAAAAGTCCACGACATTTTTGA 57.431 34.783 0.00 0.00 34.36 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.358759 CGTGGCTGCGTTCCTTTTT 59.641 52.632 0.00 0.00 0.00 1.94
5 6 2.551912 CCGTGGCTGCGTTCCTTTT 61.552 57.895 0.00 0.00 0.00 2.27
6 7 2.978010 CCGTGGCTGCGTTCCTTT 60.978 61.111 0.00 0.00 0.00 3.11
7 8 4.250305 ACCGTGGCTGCGTTCCTT 62.250 61.111 0.00 0.00 0.00 3.36
8 9 4.681978 GACCGTGGCTGCGTTCCT 62.682 66.667 0.00 0.00 0.00 3.36
9 10 4.681978 AGACCGTGGCTGCGTTCC 62.682 66.667 0.00 0.00 0.00 3.62
10 11 3.414700 CAGACCGTGGCTGCGTTC 61.415 66.667 0.00 0.00 0.00 3.95
11 12 4.235762 ACAGACCGTGGCTGCGTT 62.236 61.111 6.66 0.00 36.86 4.84
12 13 4.664677 GACAGACCGTGGCTGCGT 62.665 66.667 6.66 0.00 36.86 5.24
14 15 4.314440 TGGACAGACCGTGGCTGC 62.314 66.667 6.66 0.00 42.61 5.25
15 16 2.357517 GTGGACAGACCGTGGCTG 60.358 66.667 5.32 5.32 42.61 4.85
16 17 2.172483 GATGTGGACAGACCGTGGCT 62.172 60.000 0.00 0.00 42.61 4.75
17 18 1.741770 GATGTGGACAGACCGTGGC 60.742 63.158 0.00 0.00 42.61 5.01
18 19 1.446099 CGATGTGGACAGACCGTGG 60.446 63.158 0.00 0.00 42.61 4.94
19 20 0.456824 CTCGATGTGGACAGACCGTG 60.457 60.000 0.00 0.00 42.61 4.94
20 21 1.883732 CTCGATGTGGACAGACCGT 59.116 57.895 0.00 0.00 42.61 4.83
21 22 1.517257 GCTCGATGTGGACAGACCG 60.517 63.158 0.00 0.00 42.61 4.79
22 23 0.459237 CTGCTCGATGTGGACAGACC 60.459 60.000 0.00 0.00 39.54 3.85
23 24 0.528017 TCTGCTCGATGTGGACAGAC 59.472 55.000 0.00 0.00 32.65 3.51
24 25 1.067565 GTTCTGCTCGATGTGGACAGA 60.068 52.381 0.00 0.00 35.67 3.41
25 26 1.354040 GTTCTGCTCGATGTGGACAG 58.646 55.000 0.00 0.00 0.00 3.51
26 27 0.037326 GGTTCTGCTCGATGTGGACA 60.037 55.000 0.00 0.00 0.00 4.02
27 28 0.247736 AGGTTCTGCTCGATGTGGAC 59.752 55.000 0.00 0.00 0.00 4.02
28 29 0.532573 GAGGTTCTGCTCGATGTGGA 59.467 55.000 0.00 0.00 0.00 4.02
29 30 0.803768 CGAGGTTCTGCTCGATGTGG 60.804 60.000 0.00 0.00 44.85 4.17
30 31 0.109086 ACGAGGTTCTGCTCGATGTG 60.109 55.000 0.00 0.00 44.85 3.21
31 32 0.171455 GACGAGGTTCTGCTCGATGT 59.829 55.000 0.00 0.00 44.85 3.06
32 33 0.863538 CGACGAGGTTCTGCTCGATG 60.864 60.000 0.00 0.00 44.85 3.84
33 34 1.306642 ACGACGAGGTTCTGCTCGAT 61.307 55.000 0.00 0.00 44.85 3.59
34 35 1.909141 GACGACGAGGTTCTGCTCGA 61.909 60.000 0.00 0.00 44.85 4.04
36 37 1.153997 GGACGACGAGGTTCTGCTC 60.154 63.158 0.00 0.00 0.00 4.26
37 38 1.587933 GAGGACGACGAGGTTCTGCT 61.588 60.000 0.00 0.00 0.00 4.24
38 39 1.153997 GAGGACGACGAGGTTCTGC 60.154 63.158 0.00 0.00 0.00 4.26
39 40 1.134901 CGAGGACGACGAGGTTCTG 59.865 63.158 0.00 0.00 42.66 3.02
40 41 2.688794 GCGAGGACGACGAGGTTCT 61.689 63.158 0.00 0.00 42.66 3.01
41 42 2.202453 GCGAGGACGACGAGGTTC 60.202 66.667 0.00 0.00 42.66 3.62
42 43 2.981909 TGCGAGGACGACGAGGTT 60.982 61.111 0.00 0.00 42.66 3.50
43 44 3.735029 GTGCGAGGACGACGAGGT 61.735 66.667 0.00 0.00 42.66 3.85
44 45 3.669036 CTGTGCGAGGACGACGAGG 62.669 68.421 0.00 0.00 42.66 4.63
45 46 2.202362 CTGTGCGAGGACGACGAG 60.202 66.667 0.00 0.00 42.66 4.18
46 47 4.400109 GCTGTGCGAGGACGACGA 62.400 66.667 0.00 0.00 42.66 4.20
66 67 4.452733 GGGGAACTGACGGCGAGG 62.453 72.222 16.62 5.37 0.00 4.63
67 68 3.382832 AGGGGAACTGACGGCGAG 61.383 66.667 16.62 3.39 0.00 5.03
105 106 4.421479 AGGAACGACGAGGCGCTG 62.421 66.667 7.64 0.00 33.86 5.18
106 107 4.117661 GAGGAACGACGAGGCGCT 62.118 66.667 7.64 0.00 33.86 5.92
110 111 3.796443 TCGCGAGGAACGACGAGG 61.796 66.667 3.71 0.00 45.77 4.63
115 116 3.796443 CGAGGTCGCGAGGAACGA 61.796 66.667 10.24 0.00 45.77 3.85
135 136 3.613689 GGGATCCGGTCGGCTACC 61.614 72.222 5.45 1.16 45.77 3.18
136 137 3.974757 CGGGATCCGGTCGGCTAC 61.975 72.222 11.10 0.00 44.15 3.58
179 180 3.798511 GAAGCCGGGAAGGGGAGG 61.799 72.222 2.18 0.00 41.48 4.30
180 181 3.798511 GGAAGCCGGGAAGGGGAG 61.799 72.222 2.18 0.00 41.48 4.30
207 208 4.760047 ACTTGCGCGCAGGGTAGG 62.760 66.667 40.24 24.90 44.71 3.18
208 209 3.188786 GACTTGCGCGCAGGGTAG 61.189 66.667 40.24 32.48 44.71 3.18
209 210 4.752879 GGACTTGCGCGCAGGGTA 62.753 66.667 40.24 23.92 44.71 3.69
213 214 3.349006 AACAGGACTTGCGCGCAG 61.349 61.111 34.25 27.70 0.00 5.18
214 215 3.648982 CAACAGGACTTGCGCGCA 61.649 61.111 33.09 33.09 0.00 6.09
219 220 4.043200 GGGCGCAACAGGACTTGC 62.043 66.667 10.83 0.00 42.73 4.01
220 221 3.365265 GGGGCGCAACAGGACTTG 61.365 66.667 10.83 0.00 0.00 3.16
221 222 3.570212 AGGGGCGCAACAGGACTT 61.570 61.111 10.83 0.00 0.00 3.01
222 223 4.335647 CAGGGGCGCAACAGGACT 62.336 66.667 10.83 0.00 0.00 3.85
254 255 2.478335 TAACCGGCTTTGCAGGAGGG 62.478 60.000 15.02 0.00 46.43 4.30
255 256 1.002624 TAACCGGCTTTGCAGGAGG 60.003 57.895 15.02 3.87 46.43 4.30
256 257 0.321653 ACTAACCGGCTTTGCAGGAG 60.322 55.000 15.02 5.93 46.43 3.69
257 258 0.321298 GACTAACCGGCTTTGCAGGA 60.321 55.000 15.02 0.00 46.43 3.86
259 260 1.398390 GATGACTAACCGGCTTTGCAG 59.602 52.381 0.00 0.00 0.00 4.41
260 261 1.003118 AGATGACTAACCGGCTTTGCA 59.997 47.619 0.00 0.00 0.00 4.08
261 262 1.739067 AGATGACTAACCGGCTTTGC 58.261 50.000 0.00 0.00 0.00 3.68
262 263 2.678336 GGAAGATGACTAACCGGCTTTG 59.322 50.000 0.00 0.00 0.00 2.77
263 264 2.677037 CGGAAGATGACTAACCGGCTTT 60.677 50.000 0.00 0.00 40.03 3.51
264 265 1.134788 CGGAAGATGACTAACCGGCTT 60.135 52.381 0.00 0.00 40.03 4.35
265 266 0.460311 CGGAAGATGACTAACCGGCT 59.540 55.000 0.00 0.00 40.03 5.52
266 267 2.973420 CGGAAGATGACTAACCGGC 58.027 57.895 0.00 0.00 40.03 6.13
268 269 1.475280 TGACCGGAAGATGACTAACCG 59.525 52.381 9.46 0.00 41.76 4.44
269 270 2.738964 GCTGACCGGAAGATGACTAACC 60.739 54.545 9.46 0.00 0.00 2.85
270 271 2.541556 GCTGACCGGAAGATGACTAAC 58.458 52.381 9.46 0.00 0.00 2.34
271 272 1.134367 CGCTGACCGGAAGATGACTAA 59.866 52.381 9.46 0.00 0.00 2.24
272 273 0.738975 CGCTGACCGGAAGATGACTA 59.261 55.000 9.46 0.00 0.00 2.59
273 274 1.513158 CGCTGACCGGAAGATGACT 59.487 57.895 9.46 0.00 0.00 3.41
274 275 2.167861 GCGCTGACCGGAAGATGAC 61.168 63.158 9.46 0.00 37.44 3.06
275 276 2.184322 GCGCTGACCGGAAGATGA 59.816 61.111 9.46 0.00 37.44 2.92
276 277 3.257561 CGCGCTGACCGGAAGATG 61.258 66.667 9.46 2.90 37.44 2.90
286 287 3.932580 CTACTGGTTGCCGCGCTGA 62.933 63.158 5.56 0.00 0.00 4.26
287 288 3.490759 CTACTGGTTGCCGCGCTG 61.491 66.667 5.56 0.00 0.00 5.18
290 291 3.047280 TTGCTACTGGTTGCCGCG 61.047 61.111 0.00 0.00 0.00 6.46
291 292 1.966451 AGTTGCTACTGGTTGCCGC 60.966 57.895 0.00 0.00 31.99 6.53
292 293 1.868997 CAGTTGCTACTGGTTGCCG 59.131 57.895 19.06 0.00 46.52 5.69
293 294 1.826385 ATCAGTTGCTACTGGTTGCC 58.174 50.000 24.82 0.00 43.20 4.52
300 301 4.803098 AGGTACGAAATCAGTTGCTACT 57.197 40.909 0.00 0.00 34.00 2.57
301 302 6.956299 TTAAGGTACGAAATCAGTTGCTAC 57.044 37.500 0.00 0.00 0.00 3.58
302 303 7.966246 TTTTAAGGTACGAAATCAGTTGCTA 57.034 32.000 0.00 0.00 0.00 3.49
303 304 6.870971 TTTTAAGGTACGAAATCAGTTGCT 57.129 33.333 0.00 0.00 0.00 3.91
304 305 7.695201 GGTATTTTAAGGTACGAAATCAGTTGC 59.305 37.037 0.00 0.00 0.00 4.17
305 306 8.179615 GGGTATTTTAAGGTACGAAATCAGTTG 58.820 37.037 0.00 0.00 0.00 3.16
306 307 7.337689 GGGGTATTTTAAGGTACGAAATCAGTT 59.662 37.037 0.00 0.00 0.00 3.16
307 308 6.825213 GGGGTATTTTAAGGTACGAAATCAGT 59.175 38.462 0.00 0.00 0.00 3.41
308 309 6.824704 TGGGGTATTTTAAGGTACGAAATCAG 59.175 38.462 0.00 0.00 0.00 2.90
309 310 6.719301 TGGGGTATTTTAAGGTACGAAATCA 58.281 36.000 0.00 0.00 0.00 2.57
310 311 7.628769 TTGGGGTATTTTAAGGTACGAAATC 57.371 36.000 0.00 0.00 0.00 2.17
311 312 8.598202 AATTGGGGTATTTTAAGGTACGAAAT 57.402 30.769 0.00 0.00 0.00 2.17
312 313 8.419922 AAATTGGGGTATTTTAAGGTACGAAA 57.580 30.769 0.00 0.00 0.00 3.46
313 314 7.668886 TGAAATTGGGGTATTTTAAGGTACGAA 59.331 33.333 0.00 0.00 0.00 3.85
314 315 7.173722 TGAAATTGGGGTATTTTAAGGTACGA 58.826 34.615 0.00 0.00 0.00 3.43
315 316 7.337436 TCTGAAATTGGGGTATTTTAAGGTACG 59.663 37.037 0.00 0.00 0.00 3.67
316 317 8.584063 TCTGAAATTGGGGTATTTTAAGGTAC 57.416 34.615 0.00 0.00 0.00 3.34
317 318 9.777008 AATCTGAAATTGGGGTATTTTAAGGTA 57.223 29.630 0.00 0.00 0.00 3.08
318 319 8.679344 AATCTGAAATTGGGGTATTTTAAGGT 57.321 30.769 0.00 0.00 0.00 3.50
322 323 9.207868 CCCTAAATCTGAAATTGGGGTATTTTA 57.792 33.333 15.53 0.00 41.18 1.52
323 324 8.089625 CCCTAAATCTGAAATTGGGGTATTTT 57.910 34.615 15.53 0.00 41.18 1.82
324 325 7.675161 CCCTAAATCTGAAATTGGGGTATTT 57.325 36.000 15.53 0.00 41.18 1.40
330 331 7.679783 AGAAAAACCCTAAATCTGAAATTGGG 58.320 34.615 9.79 9.79 39.06 4.12
331 332 9.559732 AAAGAAAAACCCTAAATCTGAAATTGG 57.440 29.630 0.00 0.00 0.00 3.16
356 357 5.359194 TGTGCAGAAAATTGGGGTAAAAA 57.641 34.783 0.00 0.00 0.00 1.94
357 358 5.070981 TCATGTGCAGAAAATTGGGGTAAAA 59.929 36.000 0.00 0.00 0.00 1.52
358 359 4.590647 TCATGTGCAGAAAATTGGGGTAAA 59.409 37.500 0.00 0.00 0.00 2.01
359 360 4.155709 TCATGTGCAGAAAATTGGGGTAA 58.844 39.130 0.00 0.00 0.00 2.85
360 361 3.772387 TCATGTGCAGAAAATTGGGGTA 58.228 40.909 0.00 0.00 0.00 3.69
361 362 2.607499 TCATGTGCAGAAAATTGGGGT 58.393 42.857 0.00 0.00 0.00 4.95
362 363 3.244146 TGTTCATGTGCAGAAAATTGGGG 60.244 43.478 0.00 0.00 0.00 4.96
363 364 3.742369 GTGTTCATGTGCAGAAAATTGGG 59.258 43.478 0.00 0.00 0.00 4.12
364 365 3.426191 CGTGTTCATGTGCAGAAAATTGG 59.574 43.478 0.00 0.00 0.00 3.16
365 366 4.043750 ACGTGTTCATGTGCAGAAAATTG 58.956 39.130 0.00 0.00 0.00 2.32
366 367 4.305989 ACGTGTTCATGTGCAGAAAATT 57.694 36.364 0.00 0.00 0.00 1.82
367 368 3.988379 ACGTGTTCATGTGCAGAAAAT 57.012 38.095 0.00 0.00 0.00 1.82
368 369 3.623510 TGTACGTGTTCATGTGCAGAAAA 59.376 39.130 10.82 0.00 0.00 2.29
369 370 3.198872 TGTACGTGTTCATGTGCAGAAA 58.801 40.909 10.82 0.00 0.00 2.52
370 371 2.827652 TGTACGTGTTCATGTGCAGAA 58.172 42.857 10.82 0.00 0.00 3.02
371 372 2.517650 TGTACGTGTTCATGTGCAGA 57.482 45.000 10.82 0.00 0.00 4.26
372 373 4.919677 TTATGTACGTGTTCATGTGCAG 57.080 40.909 17.53 0.00 34.24 4.41
373 374 5.871465 AATTATGTACGTGTTCATGTGCA 57.129 34.783 15.64 15.64 35.22 4.57
374 375 6.452350 GCAAAATTATGTACGTGTTCATGTGC 60.452 38.462 0.00 7.04 0.00 4.57
375 376 6.580416 TGCAAAATTATGTACGTGTTCATGTG 59.420 34.615 0.00 0.00 0.00 3.21
376 377 6.580791 GTGCAAAATTATGTACGTGTTCATGT 59.419 34.615 0.00 3.20 0.00 3.21
377 378 6.580416 TGTGCAAAATTATGTACGTGTTCATG 59.420 34.615 0.00 0.00 38.57 3.07
378 379 6.673106 TGTGCAAAATTATGTACGTGTTCAT 58.327 32.000 0.00 3.13 38.57 2.57
379 380 6.061231 TGTGCAAAATTATGTACGTGTTCA 57.939 33.333 0.00 0.00 38.57 3.18
380 381 6.415280 TGTTGTGCAAAATTATGTACGTGTTC 59.585 34.615 0.00 0.00 38.57 3.18
381 382 6.266323 TGTTGTGCAAAATTATGTACGTGTT 58.734 32.000 0.00 0.00 38.57 3.32
382 383 5.822278 TGTTGTGCAAAATTATGTACGTGT 58.178 33.333 0.00 0.00 38.57 4.49
383 384 6.926280 ATGTTGTGCAAAATTATGTACGTG 57.074 33.333 0.00 0.00 38.57 4.49
384 385 7.938563 AAATGTTGTGCAAAATTATGTACGT 57.061 28.000 0.00 0.00 38.57 3.57
385 386 9.884299 CATAAATGTTGTGCAAAATTATGTACG 57.116 29.630 11.12 0.00 38.57 3.67
386 387 9.687717 GCATAAATGTTGTGCAAAATTATGTAC 57.312 29.630 17.07 4.45 45.69 2.90
398 399 5.232838 GCTAATTGAGGCATAAATGTTGTGC 59.767 40.000 1.50 1.50 45.66 4.57
399 400 6.567050 AGCTAATTGAGGCATAAATGTTGTG 58.433 36.000 0.00 0.00 0.00 3.33
400 401 6.780457 AGCTAATTGAGGCATAAATGTTGT 57.220 33.333 0.00 0.00 0.00 3.32
401 402 9.754382 ATAAAGCTAATTGAGGCATAAATGTTG 57.246 29.630 0.00 0.00 0.00 3.33
403 404 9.754382 CAATAAAGCTAATTGAGGCATAAATGT 57.246 29.630 13.85 0.00 36.61 2.71
404 405 9.970395 TCAATAAAGCTAATTGAGGCATAAATG 57.030 29.630 16.54 0.00 38.19 2.32
457 458 9.627123 AGTTTGCATAAAGAAGCCTACATATTA 57.373 29.630 0.00 0.00 0.00 0.98
458 459 8.408601 CAGTTTGCATAAAGAAGCCTACATATT 58.591 33.333 0.00 0.00 0.00 1.28
459 460 7.775093 TCAGTTTGCATAAAGAAGCCTACATAT 59.225 33.333 0.00 0.00 0.00 1.78
460 461 7.109501 TCAGTTTGCATAAAGAAGCCTACATA 58.890 34.615 0.00 0.00 0.00 2.29
461 462 5.945784 TCAGTTTGCATAAAGAAGCCTACAT 59.054 36.000 0.00 0.00 0.00 2.29
462 463 5.312895 TCAGTTTGCATAAAGAAGCCTACA 58.687 37.500 0.00 0.00 0.00 2.74
463 464 5.643777 TCTCAGTTTGCATAAAGAAGCCTAC 59.356 40.000 0.00 0.00 0.00 3.18
464 465 5.804639 TCTCAGTTTGCATAAAGAAGCCTA 58.195 37.500 0.00 0.00 0.00 3.93
465 466 4.655963 TCTCAGTTTGCATAAAGAAGCCT 58.344 39.130 0.00 0.00 0.00 4.58
466 467 5.573337 ATCTCAGTTTGCATAAAGAAGCC 57.427 39.130 0.00 0.00 0.00 4.35
467 468 8.970691 TTAAATCTCAGTTTGCATAAAGAAGC 57.029 30.769 0.00 0.00 0.00 3.86
476 477 9.985730 AAATTCTCAATTAAATCTCAGTTTGCA 57.014 25.926 0.00 0.00 0.00 4.08
549 550 9.562408 TGTGACAGTTCTAACAAATTACCAATA 57.438 29.630 0.00 0.00 0.00 1.90
550 551 8.458573 TGTGACAGTTCTAACAAATTACCAAT 57.541 30.769 0.00 0.00 0.00 3.16
551 552 7.867305 TGTGACAGTTCTAACAAATTACCAA 57.133 32.000 0.00 0.00 0.00 3.67
552 553 7.500892 ACATGTGACAGTTCTAACAAATTACCA 59.499 33.333 0.00 0.00 0.00 3.25
553 554 7.871853 ACATGTGACAGTTCTAACAAATTACC 58.128 34.615 0.00 0.00 0.00 2.85
554 555 8.556194 TGACATGTGACAGTTCTAACAAATTAC 58.444 33.333 1.15 0.00 0.00 1.89
555 556 8.669946 TGACATGTGACAGTTCTAACAAATTA 57.330 30.769 1.15 0.00 0.00 1.40
556 557 7.566760 TGACATGTGACAGTTCTAACAAATT 57.433 32.000 1.15 0.00 0.00 1.82
557 558 7.229306 ACATGACATGTGACAGTTCTAACAAAT 59.771 33.333 20.21 0.00 43.01 2.32
558 559 6.542005 ACATGACATGTGACAGTTCTAACAAA 59.458 34.615 20.21 0.00 43.01 2.83
559 560 6.054941 ACATGACATGTGACAGTTCTAACAA 58.945 36.000 20.21 0.00 43.01 2.83
560 561 5.610398 ACATGACATGTGACAGTTCTAACA 58.390 37.500 20.21 0.00 43.01 2.41
561 562 6.425114 AGAACATGACATGTGACAGTTCTAAC 59.575 38.462 23.83 6.87 44.07 2.34
562 563 6.524734 AGAACATGACATGTGACAGTTCTAA 58.475 36.000 23.83 0.00 44.07 2.10
563 564 6.101650 AGAACATGACATGTGACAGTTCTA 57.898 37.500 23.83 0.00 44.07 2.10
564 565 4.965814 AGAACATGACATGTGACAGTTCT 58.034 39.130 21.49 21.28 44.07 3.01
565 566 5.679734 AAGAACATGACATGTGACAGTTC 57.320 39.130 21.49 18.47 44.07 3.01
566 567 8.721478 GTTATAAGAACATGACATGTGACAGTT 58.279 33.333 21.49 12.41 44.07 3.16
567 568 7.877612 TGTTATAAGAACATGACATGTGACAGT 59.122 33.333 21.49 5.62 44.07 3.55
568 569 8.255394 TGTTATAAGAACATGACATGTGACAG 57.745 34.615 21.49 0.00 44.07 3.51
569 570 8.791327 ATGTTATAAGAACATGACATGTGACA 57.209 30.769 21.49 15.77 44.07 3.58
579 580 9.260002 GCCCCAAAATAATGTTATAAGAACATG 57.740 33.333 3.31 0.00 40.43 3.21
580 581 8.141268 CGCCCCAAAATAATGTTATAAGAACAT 58.859 33.333 0.00 0.00 42.19 2.71
581 582 7.416890 CCGCCCCAAAATAATGTTATAAGAACA 60.417 37.037 0.00 0.00 34.31 3.18
582 583 6.921307 CCGCCCCAAAATAATGTTATAAGAAC 59.079 38.462 0.00 0.00 0.00 3.01
583 584 6.834451 TCCGCCCCAAAATAATGTTATAAGAA 59.166 34.615 0.00 0.00 0.00 2.52
584 585 6.263617 GTCCGCCCCAAAATAATGTTATAAGA 59.736 38.462 0.00 0.00 0.00 2.10
585 586 6.443792 GTCCGCCCCAAAATAATGTTATAAG 58.556 40.000 0.00 0.00 0.00 1.73
586 587 5.302313 GGTCCGCCCCAAAATAATGTTATAA 59.698 40.000 0.00 0.00 0.00 0.98
587 588 4.828387 GGTCCGCCCCAAAATAATGTTATA 59.172 41.667 0.00 0.00 0.00 0.98
588 589 3.639561 GGTCCGCCCCAAAATAATGTTAT 59.360 43.478 0.00 0.00 0.00 1.89
589 590 3.025262 GGTCCGCCCCAAAATAATGTTA 58.975 45.455 0.00 0.00 0.00 2.41
590 591 1.828595 GGTCCGCCCCAAAATAATGTT 59.171 47.619 0.00 0.00 0.00 2.71
591 592 1.272760 TGGTCCGCCCCAAAATAATGT 60.273 47.619 0.00 0.00 0.00 2.71
592 593 1.136110 GTGGTCCGCCCCAAAATAATG 59.864 52.381 0.00 0.00 35.92 1.90
593 594 1.480789 GTGGTCCGCCCCAAAATAAT 58.519 50.000 0.00 0.00 35.92 1.28
594 595 0.612453 GGTGGTCCGCCCCAAAATAA 60.612 55.000 10.73 0.00 35.92 1.40
595 596 1.000646 GGTGGTCCGCCCCAAAATA 60.001 57.895 10.73 0.00 35.92 1.40
596 597 2.283604 GGTGGTCCGCCCCAAAAT 60.284 61.111 10.73 0.00 35.92 1.82
604 605 4.736896 GACGACAGGGTGGTCCGC 62.737 72.222 0.00 0.00 41.52 5.54
605 606 2.372040 TTTGACGACAGGGTGGTCCG 62.372 60.000 8.67 0.00 39.84 4.79
606 607 0.036306 ATTTGACGACAGGGTGGTCC 59.964 55.000 8.67 0.00 39.84 4.46
607 608 1.156736 CATTTGACGACAGGGTGGTC 58.843 55.000 4.80 4.80 40.72 4.02
608 609 0.889186 GCATTTGACGACAGGGTGGT 60.889 55.000 0.00 0.00 0.00 4.16
609 610 0.606401 AGCATTTGACGACAGGGTGG 60.606 55.000 0.00 0.00 0.00 4.61
610 611 2.002586 CTAGCATTTGACGACAGGGTG 58.997 52.381 0.00 0.00 0.00 4.61
611 612 1.676014 GCTAGCATTTGACGACAGGGT 60.676 52.381 10.63 0.00 0.00 4.34
612 613 1.009829 GCTAGCATTTGACGACAGGG 58.990 55.000 10.63 0.00 0.00 4.45
613 614 1.929836 GAGCTAGCATTTGACGACAGG 59.070 52.381 18.83 0.00 0.00 4.00
614 615 1.929836 GGAGCTAGCATTTGACGACAG 59.070 52.381 18.83 0.00 0.00 3.51
615 616 1.735700 CGGAGCTAGCATTTGACGACA 60.736 52.381 18.83 0.00 0.00 4.35
616 617 0.924090 CGGAGCTAGCATTTGACGAC 59.076 55.000 18.83 0.00 0.00 4.34
617 618 3.345737 CGGAGCTAGCATTTGACGA 57.654 52.632 18.83 0.00 0.00 4.20
668 670 8.253810 ACTAGTACACTACGAGTACAATCTACA 58.746 37.037 0.00 0.00 41.79 2.74
727 729 5.124457 GGATGACATTCAGCTAGCAAAAAGA 59.876 40.000 18.83 3.67 32.54 2.52
844 846 3.581332 ACCTAACCTAACAGCAAGCAGTA 59.419 43.478 0.00 0.00 0.00 2.74
903 905 2.490991 GGTCTTTCGTGCTTACCAAGT 58.509 47.619 0.00 0.00 0.00 3.16
966 968 4.952102 GGCTGGGGTTTGGGGCAA 62.952 66.667 0.00 0.00 0.00 4.52
968 970 4.720680 ATGGCTGGGGTTTGGGGC 62.721 66.667 0.00 0.00 0.00 5.80
1004 1061 0.457851 ACTCCTCCTCAGCGATTTCG 59.542 55.000 0.00 0.00 43.27 3.46
1013 1070 1.827344 TCGTACTCGTACTCCTCCTCA 59.173 52.381 5.76 0.00 38.33 3.86
1073 1130 2.922503 TGCACCTTCTCCCGCTCA 60.923 61.111 0.00 0.00 0.00 4.26
1126 1183 2.126228 GTCGTGGACGCGGATCAA 60.126 61.111 12.47 0.00 39.60 2.57
1169 1226 3.531207 CGATGAGCTCCTCCCGCA 61.531 66.667 12.15 0.00 0.00 5.69
1270 1327 2.050714 GAACACGTCGAGTCCGCA 60.051 61.111 0.00 0.00 35.37 5.69
1339 1396 0.949105 ACCTCAATGACGACGTTGGC 60.949 55.000 17.57 4.29 41.66 4.52
1476 2838 4.277174 AGTTGCATGTTGAACACCGATAAA 59.723 37.500 0.00 0.00 0.00 1.40
1656 3031 7.451501 TTGATTAGAGCACAATGAAACATCA 57.548 32.000 0.00 0.00 0.00 3.07
1657 3032 8.746922 TTTTGATTAGAGCACAATGAAACATC 57.253 30.769 0.00 0.00 0.00 3.06
1859 3323 0.925558 TTCCTGCCCTTATGATGCCA 59.074 50.000 0.00 0.00 0.00 4.92
1962 3429 5.104374 CCATGCTTTTGCCTACAAACATAG 58.896 41.667 0.00 0.00 45.29 2.23
1965 3432 2.697751 ACCATGCTTTTGCCTACAAACA 59.302 40.909 0.00 0.00 45.29 2.83
2085 3552 0.749649 CTTGGCAGCGAGACTCCTAT 59.250 55.000 0.00 0.00 0.00 2.57
2177 3644 2.288886 ACCAAGAAGACGCTCCTTGTAC 60.289 50.000 5.44 0.00 36.47 2.90
2192 3659 4.405358 AGCAAACCAAATGAAAGACCAAGA 59.595 37.500 0.00 0.00 0.00 3.02
2298 3765 1.940613 GTTATGCCCTAACTGCCTTCG 59.059 52.381 0.33 0.00 37.36 3.79
2356 3823 3.181440 TGGCCTGATATGTGAATCCCTTC 60.181 47.826 3.32 0.00 0.00 3.46
2526 4156 6.399639 TTGTGAGGAACCATAAAAAGGAAC 57.600 37.500 0.00 0.00 0.00 3.62
2664 4294 1.339438 ACATTGAGAGCAGCGTTCCAT 60.339 47.619 0.00 0.00 0.00 3.41
2720 4350 7.495934 CAGGTGTAGACGAATTCATAAATCCTT 59.504 37.037 6.22 0.00 0.00 3.36
2817 4447 1.850345 ACCCCTCTTGTTCTGAAACCA 59.150 47.619 0.00 0.00 34.28 3.67
2916 4546 0.250901 AAACAGCAAGATCGCCACCT 60.251 50.000 0.00 0.00 0.00 4.00
3006 4636 4.015084 CAAGATTCCCAGCAGTGAGAAAT 58.985 43.478 0.00 0.00 0.00 2.17
3161 4791 4.796038 ATCTGGTGCAAAGGAAATTCAG 57.204 40.909 0.00 0.00 0.00 3.02
3163 4793 8.225603 TCTATAATCTGGTGCAAAGGAAATTC 57.774 34.615 0.00 0.00 0.00 2.17
3185 4818 2.773661 AGGCACACCACATGATGATCTA 59.226 45.455 0.00 0.00 39.06 1.98
3396 5032 0.176910 GAAGAGAAGGGGGAGCGAAG 59.823 60.000 0.00 0.00 0.00 3.79
3397 5033 0.252284 AGAAGAGAAGGGGGAGCGAA 60.252 55.000 0.00 0.00 0.00 4.70
3398 5034 0.252284 AAGAAGAGAAGGGGGAGCGA 60.252 55.000 0.00 0.00 0.00 4.93
3399 5035 0.615850 AAAGAAGAGAAGGGGGAGCG 59.384 55.000 0.00 0.00 0.00 5.03
3400 5036 2.307392 AGAAAAGAAGAGAAGGGGGAGC 59.693 50.000 0.00 0.00 0.00 4.70
3412 5059 6.144175 ACTACTCGTCGAGAAAGAAAAGAAG 58.856 40.000 28.33 10.84 33.32 2.85
3541 5194 4.459331 CCGTCCGGCAATGCGTTG 62.459 66.667 14.54 14.54 38.39 4.10
3546 5199 4.402528 TGTCCCCGTCCGGCAATG 62.403 66.667 0.00 0.00 0.00 2.82
3547 5200 4.096003 CTGTCCCCGTCCGGCAAT 62.096 66.667 0.00 0.00 0.00 3.56
3552 5205 4.143333 AATCGCTGTCCCCGTCCG 62.143 66.667 0.00 0.00 0.00 4.79
3553 5206 2.511600 CAATCGCTGTCCCCGTCC 60.512 66.667 0.00 0.00 0.00 4.79
3554 5207 3.195698 GCAATCGCTGTCCCCGTC 61.196 66.667 0.00 0.00 34.30 4.79
3557 5210 1.862602 AAAACGCAATCGCTGTCCCC 61.863 55.000 0.00 0.00 39.84 4.81
3558 5211 0.039527 AAAAACGCAATCGCTGTCCC 60.040 50.000 0.00 0.00 39.84 4.46
3559 5212 1.052287 CAAAAACGCAATCGCTGTCC 58.948 50.000 0.00 0.00 39.84 4.02
3560 5213 0.430858 GCAAAAACGCAATCGCTGTC 59.569 50.000 0.00 0.00 39.84 3.51
3561 5214 0.248825 TGCAAAAACGCAATCGCTGT 60.249 45.000 0.00 0.00 39.45 4.40
3562 5215 0.159345 GTGCAAAAACGCAATCGCTG 59.841 50.000 0.00 0.00 45.14 5.18
3563 5216 0.248825 TGTGCAAAAACGCAATCGCT 60.249 45.000 0.00 0.00 45.14 4.93
3564 5217 0.783579 ATGTGCAAAAACGCAATCGC 59.216 45.000 0.00 0.00 45.14 4.58
3565 5218 2.318578 AGATGTGCAAAAACGCAATCG 58.681 42.857 0.00 0.00 45.14 3.34
3566 5219 3.121778 GGAAGATGTGCAAAAACGCAATC 59.878 43.478 0.00 0.00 45.14 2.67
3567 5220 3.059166 GGAAGATGTGCAAAAACGCAAT 58.941 40.909 0.00 0.00 45.14 3.56
3568 5221 2.468831 GGAAGATGTGCAAAAACGCAA 58.531 42.857 0.00 0.00 45.14 4.85
3569 5222 1.599171 CGGAAGATGTGCAAAAACGCA 60.599 47.619 0.00 0.00 40.32 5.24
3570 5223 1.052287 CGGAAGATGTGCAAAAACGC 58.948 50.000 0.00 0.00 0.00 4.84
3571 5224 1.685302 CCGGAAGATGTGCAAAAACG 58.315 50.000 0.00 0.00 0.00 3.60
3572 5225 1.269517 TGCCGGAAGATGTGCAAAAAC 60.270 47.619 5.05 0.00 0.00 2.43
3573 5226 1.035923 TGCCGGAAGATGTGCAAAAA 58.964 45.000 5.05 0.00 0.00 1.94
3574 5227 1.255882 ATGCCGGAAGATGTGCAAAA 58.744 45.000 5.05 0.00 37.27 2.44
3575 5228 1.067706 CAATGCCGGAAGATGTGCAAA 60.068 47.619 5.05 0.00 37.27 3.68
3576 5229 0.527113 CAATGCCGGAAGATGTGCAA 59.473 50.000 5.05 0.00 37.27 4.08
3577 5230 0.608856 ACAATGCCGGAAGATGTGCA 60.609 50.000 5.05 0.00 38.23 4.57
3578 5231 1.331756 CTACAATGCCGGAAGATGTGC 59.668 52.381 5.05 0.00 0.00 4.57
3579 5232 1.331756 GCTACAATGCCGGAAGATGTG 59.668 52.381 5.05 1.15 0.00 3.21
3580 5233 1.065491 TGCTACAATGCCGGAAGATGT 60.065 47.619 5.05 7.35 0.00 3.06
3581 5234 1.667236 TGCTACAATGCCGGAAGATG 58.333 50.000 5.05 0.00 0.00 2.90
3582 5235 2.017049 GTTGCTACAATGCCGGAAGAT 58.983 47.619 5.05 0.00 0.00 2.40
3583 5236 1.448985 GTTGCTACAATGCCGGAAGA 58.551 50.000 5.05 0.00 0.00 2.87
3584 5237 0.096976 CGTTGCTACAATGCCGGAAG 59.903 55.000 5.05 0.00 0.00 3.46
3693 5358 1.652563 CGATATCTGGACGCGGACA 59.347 57.895 12.47 8.07 0.00 4.02
3704 5369 3.589988 GCATCCGTTTCATCCGATATCT 58.410 45.455 0.34 0.00 0.00 1.98
3707 5372 1.338655 TCGCATCCGTTTCATCCGATA 59.661 47.619 0.00 0.00 35.54 2.92
3750 5415 1.335810 GGTTTTTCTGTTCCGGGTGAC 59.664 52.381 0.00 0.00 0.00 3.67
3773 5438 4.610945 CATCACCTTTTCTTTTCAAGCGT 58.389 39.130 0.00 0.00 0.00 5.07
3797 5463 9.537192 CTTTAATGGTAATAATCGTGACTACCA 57.463 33.333 2.25 2.25 44.52 3.25
3846 5524 0.527565 AACCGTACGTAATCGCCACT 59.472 50.000 15.21 0.00 41.18 4.00
3871 5549 1.179152 TTTGGCTGCTGATGACATGG 58.821 50.000 0.00 0.00 0.00 3.66
3876 5554 1.603456 TTCGTTTTGGCTGCTGATGA 58.397 45.000 0.00 0.00 0.00 2.92
3877 5555 2.642139 ATTCGTTTTGGCTGCTGATG 57.358 45.000 0.00 0.00 0.00 3.07
3878 5556 2.414559 CGAATTCGTTTTGGCTGCTGAT 60.415 45.455 19.67 0.00 34.11 2.90
3906 5588 4.179599 CTCCTCCCCCTCCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
3909 5591 4.179599 CTCCTCCTCCCCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
3916 5614 2.364448 AACGAGCCTCCTCCTCCC 60.364 66.667 0.00 0.00 34.49 4.30
4008 5707 1.918293 AGCCTCCAATCCGACCACA 60.918 57.895 0.00 0.00 0.00 4.17
4058 5757 4.454504 TCACCCGTCATTAGAAAAGAAAGC 59.545 41.667 0.00 0.00 0.00 3.51
4094 5796 0.102300 AAGCACCTGAAAACGGCAAC 59.898 50.000 0.00 0.00 0.00 4.17
4153 5855 6.620877 AGGAGGCATTATCATAATAACGGA 57.379 37.500 0.00 0.00 30.27 4.69
4183 5885 0.469144 ACCCCACGACATTTTTGCCT 60.469 50.000 0.00 0.00 0.00 4.75
4184 5886 0.391228 AACCCCACGACATTTTTGCC 59.609 50.000 0.00 0.00 0.00 4.52
4185 5887 2.131972 GAAACCCCACGACATTTTTGC 58.868 47.619 0.00 0.00 0.00 3.68
4186 5888 3.067461 TCAGAAACCCCACGACATTTTTG 59.933 43.478 0.00 0.00 0.00 2.44
4187 5889 3.292460 TCAGAAACCCCACGACATTTTT 58.708 40.909 0.00 0.00 0.00 1.94
4188 5890 2.938838 TCAGAAACCCCACGACATTTT 58.061 42.857 0.00 0.00 0.00 1.82
4189 5891 2.649531 TCAGAAACCCCACGACATTT 57.350 45.000 0.00 0.00 0.00 2.32
4190 5892 2.649531 TTCAGAAACCCCACGACATT 57.350 45.000 0.00 0.00 0.00 2.71
4191 5893 2.879103 ATTCAGAAACCCCACGACAT 57.121 45.000 0.00 0.00 0.00 3.06
4192 5894 2.649531 AATTCAGAAACCCCACGACA 57.350 45.000 0.00 0.00 0.00 4.35
4193 5895 6.238648 CCATTATAATTCAGAAACCCCACGAC 60.239 42.308 0.00 0.00 0.00 4.34
4194 5896 5.825679 CCATTATAATTCAGAAACCCCACGA 59.174 40.000 0.00 0.00 0.00 4.35
4195 5897 5.825679 TCCATTATAATTCAGAAACCCCACG 59.174 40.000 0.00 0.00 0.00 4.94
4196 5898 7.123547 TGTTCCATTATAATTCAGAAACCCCAC 59.876 37.037 0.00 0.00 0.00 4.61
4197 5899 7.185565 TGTTCCATTATAATTCAGAAACCCCA 58.814 34.615 0.00 0.00 0.00 4.96
4198 5900 7.654022 TGTTCCATTATAATTCAGAAACCCC 57.346 36.000 0.00 0.00 0.00 4.95
4199 5901 8.749354 AGTTGTTCCATTATAATTCAGAAACCC 58.251 33.333 0.00 0.00 0.00 4.11
4229 5931 9.915629 AGGCAAAAATTCGTATTATTTACACAA 57.084 25.926 0.00 0.00 0.00 3.33
4230 5932 9.347934 CAGGCAAAAATTCGTATTATTTACACA 57.652 29.630 0.00 0.00 0.00 3.72
4231 5933 8.318167 GCAGGCAAAAATTCGTATTATTTACAC 58.682 33.333 0.00 0.00 0.00 2.90
4232 5934 7.489757 GGCAGGCAAAAATTCGTATTATTTACA 59.510 33.333 0.00 0.00 0.00 2.41
4233 5935 7.042992 GGGCAGGCAAAAATTCGTATTATTTAC 60.043 37.037 0.00 0.00 0.00 2.01
4234 5936 6.981559 GGGCAGGCAAAAATTCGTATTATTTA 59.018 34.615 0.00 0.00 0.00 1.40
4235 5937 5.815222 GGGCAGGCAAAAATTCGTATTATTT 59.185 36.000 0.00 0.00 0.00 1.40
4236 5938 5.105146 TGGGCAGGCAAAAATTCGTATTATT 60.105 36.000 0.00 0.00 0.00 1.40
4237 5939 4.404073 TGGGCAGGCAAAAATTCGTATTAT 59.596 37.500 0.00 0.00 0.00 1.28
4238 5940 3.764434 TGGGCAGGCAAAAATTCGTATTA 59.236 39.130 0.00 0.00 0.00 0.98
4239 5941 2.564947 TGGGCAGGCAAAAATTCGTATT 59.435 40.909 0.00 0.00 0.00 1.89
4240 5942 2.175202 TGGGCAGGCAAAAATTCGTAT 58.825 42.857 0.00 0.00 0.00 3.06
4241 5943 1.621992 TGGGCAGGCAAAAATTCGTA 58.378 45.000 0.00 0.00 0.00 3.43
4242 5944 0.975887 ATGGGCAGGCAAAAATTCGT 59.024 45.000 0.00 0.00 0.00 3.85
4243 5945 2.097680 AATGGGCAGGCAAAAATTCG 57.902 45.000 0.00 0.00 0.00 3.34
4244 5946 6.823182 ACTTTATAATGGGCAGGCAAAAATTC 59.177 34.615 0.00 0.00 0.00 2.17
4245 5947 6.720309 ACTTTATAATGGGCAGGCAAAAATT 58.280 32.000 0.00 0.00 0.00 1.82
4246 5948 6.312141 ACTTTATAATGGGCAGGCAAAAAT 57.688 33.333 0.00 0.00 0.00 1.82
4247 5949 5.337975 GGACTTTATAATGGGCAGGCAAAAA 60.338 40.000 0.00 0.00 0.00 1.94
4248 5950 4.161377 GGACTTTATAATGGGCAGGCAAAA 59.839 41.667 0.00 0.00 0.00 2.44
4249 5951 3.704061 GGACTTTATAATGGGCAGGCAAA 59.296 43.478 0.00 0.00 0.00 3.68
4250 5952 3.295973 GGACTTTATAATGGGCAGGCAA 58.704 45.455 0.00 0.00 0.00 4.52
4251 5953 2.243478 TGGACTTTATAATGGGCAGGCA 59.757 45.455 0.00 0.00 0.00 4.75
4252 5954 2.944129 TGGACTTTATAATGGGCAGGC 58.056 47.619 3.66 0.00 0.00 4.85
4253 5955 4.728772 TGATGGACTTTATAATGGGCAGG 58.271 43.478 3.66 0.00 0.00 4.85
4254 5956 6.713762 TTTGATGGACTTTATAATGGGCAG 57.286 37.500 3.66 0.00 0.00 4.85
4255 5957 7.487822 TTTTTGATGGACTTTATAATGGGCA 57.512 32.000 3.66 0.00 0.00 5.36
4256 5958 8.962884 AATTTTTGATGGACTTTATAATGGGC 57.037 30.769 3.66 0.00 0.00 5.36
4275 5977 6.602803 CCTATGGGCAGGCAAAAATAATTTTT 59.397 34.615 0.00 0.00 43.20 1.94
4276 5978 6.069731 TCCTATGGGCAGGCAAAAATAATTTT 60.070 34.615 0.00 0.00 35.42 1.82
4277 5979 5.428131 TCCTATGGGCAGGCAAAAATAATTT 59.572 36.000 0.00 0.00 35.49 1.82
4278 5980 4.968080 TCCTATGGGCAGGCAAAAATAATT 59.032 37.500 0.00 0.00 35.49 1.40
4279 5981 4.555689 TCCTATGGGCAGGCAAAAATAAT 58.444 39.130 0.00 0.00 35.49 1.28
4280 5982 3.960102 CTCCTATGGGCAGGCAAAAATAA 59.040 43.478 0.00 0.00 35.49 1.40
4281 5983 3.565307 CTCCTATGGGCAGGCAAAAATA 58.435 45.455 0.00 0.00 35.49 1.40
4282 5984 2.391678 CTCCTATGGGCAGGCAAAAAT 58.608 47.619 0.00 0.00 35.49 1.82
4283 5985 1.619432 CCTCCTATGGGCAGGCAAAAA 60.619 52.381 0.00 0.00 35.49 1.94
4284 5986 0.033208 CCTCCTATGGGCAGGCAAAA 60.033 55.000 0.00 0.00 35.49 2.44
4285 5987 1.614711 CCTCCTATGGGCAGGCAAA 59.385 57.895 0.00 0.00 35.49 3.68
4286 5988 3.334604 CCTCCTATGGGCAGGCAA 58.665 61.111 0.00 0.00 35.49 4.52
4293 5995 8.421249 TTTTCAATTATAATGCCTCCTATGGG 57.579 34.615 0.00 0.00 0.00 4.00
4294 5996 9.082313 ACTTTTCAATTATAATGCCTCCTATGG 57.918 33.333 0.00 0.00 0.00 2.74
4296 5998 9.301897 GGACTTTTCAATTATAATGCCTCCTAT 57.698 33.333 0.00 0.00 0.00 2.57
4297 5999 8.278639 TGGACTTTTCAATTATAATGCCTCCTA 58.721 33.333 0.00 0.00 0.00 2.94
4298 6000 7.068716 GTGGACTTTTCAATTATAATGCCTCCT 59.931 37.037 0.00 0.00 0.00 3.69
4299 6001 7.203218 GTGGACTTTTCAATTATAATGCCTCC 58.797 38.462 0.00 0.00 0.00 4.30
4300 6002 6.912591 CGTGGACTTTTCAATTATAATGCCTC 59.087 38.462 0.00 0.00 0.00 4.70
4301 6003 6.601613 TCGTGGACTTTTCAATTATAATGCCT 59.398 34.615 0.00 0.00 0.00 4.75
4302 6004 6.691388 GTCGTGGACTTTTCAATTATAATGCC 59.309 38.462 0.00 0.00 0.00 4.40
4303 6005 7.247728 TGTCGTGGACTTTTCAATTATAATGC 58.752 34.615 0.00 0.00 33.15 3.56
4304 6006 9.787532 AATGTCGTGGACTTTTCAATTATAATG 57.212 29.630 0.00 0.00 33.15 1.90
4308 6010 8.977505 CAAAAATGTCGTGGACTTTTCAATTAT 58.022 29.630 9.23 0.00 38.40 1.28
4309 6011 8.191446 TCAAAAATGTCGTGGACTTTTCAATTA 58.809 29.630 9.23 0.00 38.40 1.40
4310 6012 7.038659 TCAAAAATGTCGTGGACTTTTCAATT 58.961 30.769 9.23 0.68 38.40 2.32
4311 6013 6.568869 TCAAAAATGTCGTGGACTTTTCAAT 58.431 32.000 9.23 0.00 38.40 2.57
4312 6014 5.955488 TCAAAAATGTCGTGGACTTTTCAA 58.045 33.333 9.23 0.00 38.40 2.69
4313 6015 5.568685 TCAAAAATGTCGTGGACTTTTCA 57.431 34.783 9.23 0.00 38.40 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.