Multiple sequence alignment - TraesCS2B01G119100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G119100 chr2B 100.000 4014 0 0 1 4014 85179088 85175075 0.000000e+00 7413.0
1 TraesCS2B01G119100 chr2B 85.611 1793 130 62 1112 2850 85073955 85075673 0.000000e+00 1764.0
2 TraesCS2B01G119100 chr2B 84.438 347 35 13 776 1119 85073577 85073907 1.390000e-84 324.0
3 TraesCS2B01G119100 chr2B 91.892 111 8 1 324 433 395739464 395739574 1.930000e-33 154.0
4 TraesCS2B01G119100 chr2B 96.226 53 2 0 1 53 67031067 67031119 1.990000e-13 87.9
5 TraesCS2B01G119100 chr2D 93.085 2010 75 31 1112 3105 54488039 54486078 0.000000e+00 2883.0
6 TraesCS2B01G119100 chr2D 88.298 1316 91 41 1119 2410 54317467 54318743 0.000000e+00 1519.0
7 TraesCS2B01G119100 chr2D 90.951 652 57 2 3212 3861 364978056 364977405 0.000000e+00 876.0
8 TraesCS2B01G119100 chr2D 85.749 407 42 4 2459 2850 54318763 54319168 2.230000e-112 416.0
9 TraesCS2B01G119100 chr2D 90.909 132 10 2 3885 4014 54485868 54485737 4.120000e-40 176.0
10 TraesCS2B01G119100 chr2D 85.714 105 7 6 776 872 54317207 54317311 1.970000e-18 104.0
11 TraesCS2B01G119100 chr2D 98.077 52 1 0 1 52 599953521 599953470 1.540000e-14 91.6
12 TraesCS2B01G119100 chr2D 88.000 75 7 1 1 73 632231063 632230989 1.990000e-13 87.9
13 TraesCS2B01G119100 chr2A 92.669 1023 45 15 2168 3167 54954545 54953530 0.000000e+00 1447.0
14 TraesCS2B01G119100 chr2A 85.704 1413 94 53 758 2143 54881994 54883325 0.000000e+00 1391.0
15 TraesCS2B01G119100 chr2A 83.659 1536 121 79 674 2143 54956005 54954534 0.000000e+00 1327.0
16 TraesCS2B01G119100 chr2A 81.085 719 75 27 2157 2848 54883304 54883988 5.950000e-143 518.0
17 TraesCS2B01G119100 chr2A 90.566 106 9 1 329 433 391770492 391770387 5.410000e-29 139.0
18 TraesCS2B01G119100 chr2A 84.810 79 9 3 479 555 54881554 54881631 4.300000e-10 76.8
19 TraesCS2B01G119100 chr5B 91.239 662 53 5 3202 3860 558705220 558705879 0.000000e+00 896.0
20 TraesCS2B01G119100 chr5B 90.812 653 56 3 3212 3860 671868261 671867609 0.000000e+00 870.0
21 TraesCS2B01G119100 chr3B 91.398 651 54 2 3212 3860 62389268 62389918 0.000000e+00 891.0
22 TraesCS2B01G119100 chr3B 91.104 652 55 3 3212 3860 49870008 49869357 0.000000e+00 880.0
23 TraesCS2B01G119100 chr3B 91.318 645 53 3 3212 3853 650613832 650614476 0.000000e+00 878.0
24 TraesCS2B01G119100 chr4B 91.258 652 53 4 3212 3860 617392724 617393374 0.000000e+00 885.0
25 TraesCS2B01G119100 chr4B 85.494 324 40 5 1404 1725 380653769 380654087 8.320000e-87 331.0
26 TraesCS2B01G119100 chr4B 91.724 145 12 0 1179 1323 380653478 380653622 6.800000e-48 202.0
27 TraesCS2B01G119100 chr7B 91.104 652 54 4 3212 3860 217303297 217303947 0.000000e+00 880.0
28 TraesCS2B01G119100 chr7B 90.826 654 55 5 3212 3861 453114950 453114298 0.000000e+00 870.0
29 TraesCS2B01G119100 chr4D 85.802 324 39 6 1404 1725 304690478 304690796 1.790000e-88 337.0
30 TraesCS2B01G119100 chr4D 91.724 145 12 0 1179 1323 304690191 304690335 6.800000e-48 202.0
31 TraesCS2B01G119100 chr5A 79.710 483 79 13 1192 1660 317248159 317247682 8.320000e-87 331.0
32 TraesCS2B01G119100 chr5A 98.113 53 1 0 1 53 43282996 43283048 4.270000e-15 93.5
33 TraesCS2B01G119100 chr4A 86.319 307 37 3 1423 1728 174157172 174156870 2.990000e-86 329.0
34 TraesCS2B01G119100 chr4A 91.724 145 12 0 1179 1323 174157472 174157328 6.800000e-48 202.0
35 TraesCS2B01G119100 chr4A 89.362 94 5 2 343 435 140635174 140635085 3.280000e-21 113.0
36 TraesCS2B01G119100 chr3A 78.378 481 81 22 1180 1657 650056199 650056659 1.410000e-74 291.0
37 TraesCS2B01G119100 chr3A 91.379 58 3 2 331 387 508433164 508433220 1.200000e-10 78.7
38 TraesCS2B01G119100 chr1D 90.909 110 9 1 325 433 199337809 199337700 3.230000e-31 147.0
39 TraesCS2B01G119100 chr1A 90.000 110 10 1 325 433 250529873 250529764 1.500000e-29 141.0
40 TraesCS2B01G119100 chr7A 98.113 53 1 0 1 53 651692418 651692470 4.270000e-15 93.5
41 TraesCS2B01G119100 chr3D 98.077 52 1 0 2 53 18926410 18926461 1.540000e-14 91.6
42 TraesCS2B01G119100 chrUn 96.226 53 2 0 1 53 30075265 30075317 1.990000e-13 87.9
43 TraesCS2B01G119100 chr1B 98.000 50 1 0 1 50 7765690 7765739 1.990000e-13 87.9
44 TraesCS2B01G119100 chr1B 97.619 42 1 0 2263 2304 481541349 481541308 5.560000e-09 73.1
45 TraesCS2B01G119100 chr7D 92.453 53 3 1 1 53 9236291 9236240 1.550000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G119100 chr2B 85175075 85179088 4013 True 7413.000000 7413 100.000000 1 4014 1 chr2B.!!$R1 4013
1 TraesCS2B01G119100 chr2B 85073577 85075673 2096 False 1044.000000 1764 85.024500 776 2850 2 chr2B.!!$F3 2074
2 TraesCS2B01G119100 chr2D 54485737 54488039 2302 True 1529.500000 2883 91.997000 1112 4014 2 chr2D.!!$R4 2902
3 TraesCS2B01G119100 chr2D 364977405 364978056 651 True 876.000000 876 90.951000 3212 3861 1 chr2D.!!$R1 649
4 TraesCS2B01G119100 chr2D 54317207 54319168 1961 False 679.666667 1519 86.587000 776 2850 3 chr2D.!!$F1 2074
5 TraesCS2B01G119100 chr2A 54953530 54956005 2475 True 1387.000000 1447 88.164000 674 3167 2 chr2A.!!$R2 2493
6 TraesCS2B01G119100 chr2A 54881554 54883988 2434 False 661.933333 1391 83.866333 479 2848 3 chr2A.!!$F1 2369
7 TraesCS2B01G119100 chr5B 558705220 558705879 659 False 896.000000 896 91.239000 3202 3860 1 chr5B.!!$F1 658
8 TraesCS2B01G119100 chr5B 671867609 671868261 652 True 870.000000 870 90.812000 3212 3860 1 chr5B.!!$R1 648
9 TraesCS2B01G119100 chr3B 62389268 62389918 650 False 891.000000 891 91.398000 3212 3860 1 chr3B.!!$F1 648
10 TraesCS2B01G119100 chr3B 49869357 49870008 651 True 880.000000 880 91.104000 3212 3860 1 chr3B.!!$R1 648
11 TraesCS2B01G119100 chr3B 650613832 650614476 644 False 878.000000 878 91.318000 3212 3853 1 chr3B.!!$F2 641
12 TraesCS2B01G119100 chr4B 617392724 617393374 650 False 885.000000 885 91.258000 3212 3860 1 chr4B.!!$F1 648
13 TraesCS2B01G119100 chr4B 380653478 380654087 609 False 266.500000 331 88.609000 1179 1725 2 chr4B.!!$F2 546
14 TraesCS2B01G119100 chr7B 217303297 217303947 650 False 880.000000 880 91.104000 3212 3860 1 chr7B.!!$F1 648
15 TraesCS2B01G119100 chr7B 453114298 453114950 652 True 870.000000 870 90.826000 3212 3861 1 chr7B.!!$R1 649
16 TraesCS2B01G119100 chr4D 304690191 304690796 605 False 269.500000 337 88.763000 1179 1725 2 chr4D.!!$F1 546
17 TraesCS2B01G119100 chr4A 174156870 174157472 602 True 265.500000 329 89.021500 1179 1728 2 chr4A.!!$R2 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.033503 TCGACATAGGCCTGTCCTGA 60.034 55.0 17.99 7.06 46.98 3.86 F
249 250 0.034896 ATTGGTGTTTCGGTCGCTCT 59.965 50.0 0.00 0.00 0.00 4.09 F
1779 2203 0.108615 CGATCAGGCTTGGACGACTT 60.109 55.0 9.11 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1857 2281 0.873743 GGCGCGAAGAGGATCAGAAG 60.874 60.0 12.10 0.0 37.82 2.85 R
2211 2716 0.396435 CCACGCCATGCCTATCCTTA 59.604 55.0 0.00 0.0 0.00 2.69 R
3288 3991 0.397254 AGGTGGTCTACGGATCTGGG 60.397 60.0 6.47 0.0 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.280494 CGGGGGCCGTCGACATAG 62.280 72.222 17.16 4.57 42.73 2.23
26 27 3.925090 GGGGGCCGTCGACATAGG 61.925 72.222 17.16 10.00 0.00 2.57
30 31 2.279517 GCCGTCGACATAGGCCTG 60.280 66.667 17.99 2.10 44.80 4.85
31 32 3.077519 GCCGTCGACATAGGCCTGT 62.078 63.158 17.99 5.57 44.80 4.00
32 33 1.065928 CCGTCGACATAGGCCTGTC 59.934 63.158 17.99 15.49 41.73 3.51
33 34 1.065928 CGTCGACATAGGCCTGTCC 59.934 63.158 17.99 3.48 42.06 4.02
35 36 0.103208 GTCGACATAGGCCTGTCCTG 59.897 60.000 17.99 10.13 46.98 3.86
36 37 0.033503 TCGACATAGGCCTGTCCTGA 60.034 55.000 17.99 7.06 46.98 3.86
37 38 0.103208 CGACATAGGCCTGTCCTGAC 59.897 60.000 17.99 7.14 46.98 3.51
38 39 0.103208 GACATAGGCCTGTCCTGACG 59.897 60.000 17.99 0.00 46.98 4.35
39 40 1.330655 ACATAGGCCTGTCCTGACGG 61.331 60.000 17.99 0.00 46.98 4.79
40 41 2.435693 ATAGGCCTGTCCTGACGGC 61.436 63.158 17.99 18.52 46.98 5.68
43 44 4.767255 GCCTGTCCTGACGGCCAG 62.767 72.222 16.93 0.00 41.62 4.85
44 45 3.314331 CCTGTCCTGACGGCCAGT 61.314 66.667 2.24 0.72 41.33 4.00
57 58 3.483869 CCAGTCAGGGCTAGGGGC 61.484 72.222 0.00 0.00 40.90 5.80
87 88 4.737855 GTAGTGAACCAGATGCTAGGAA 57.262 45.455 0.00 0.00 0.00 3.36
88 89 5.086104 GTAGTGAACCAGATGCTAGGAAA 57.914 43.478 0.00 0.00 0.00 3.13
89 90 3.944087 AGTGAACCAGATGCTAGGAAAC 58.056 45.455 0.00 0.00 0.00 2.78
90 91 3.327757 AGTGAACCAGATGCTAGGAAACA 59.672 43.478 0.00 0.00 0.00 2.83
91 92 4.072131 GTGAACCAGATGCTAGGAAACAA 58.928 43.478 0.00 0.00 0.00 2.83
92 93 4.702131 GTGAACCAGATGCTAGGAAACAAT 59.298 41.667 0.00 0.00 0.00 2.71
93 94 5.880332 GTGAACCAGATGCTAGGAAACAATA 59.120 40.000 0.00 0.00 0.00 1.90
94 95 5.880332 TGAACCAGATGCTAGGAAACAATAC 59.120 40.000 0.00 0.00 0.00 1.89
95 96 4.781934 ACCAGATGCTAGGAAACAATACC 58.218 43.478 0.00 0.00 0.00 2.73
96 97 4.227300 ACCAGATGCTAGGAAACAATACCA 59.773 41.667 0.00 0.00 0.00 3.25
97 98 4.818546 CCAGATGCTAGGAAACAATACCAG 59.181 45.833 0.00 0.00 0.00 4.00
98 99 4.274459 CAGATGCTAGGAAACAATACCAGC 59.726 45.833 0.00 0.00 33.95 4.85
99 100 4.164988 AGATGCTAGGAAACAATACCAGCT 59.835 41.667 0.00 0.00 34.22 4.24
100 101 3.609853 TGCTAGGAAACAATACCAGCTG 58.390 45.455 6.78 6.78 34.22 4.24
101 102 3.263170 TGCTAGGAAACAATACCAGCTGA 59.737 43.478 17.39 0.00 34.22 4.26
102 103 4.261801 GCTAGGAAACAATACCAGCTGAA 58.738 43.478 17.39 2.75 32.18 3.02
103 104 4.333926 GCTAGGAAACAATACCAGCTGAAG 59.666 45.833 17.39 1.02 32.18 3.02
104 105 3.690460 AGGAAACAATACCAGCTGAAGG 58.310 45.455 17.39 0.00 0.00 3.46
105 106 2.164422 GGAAACAATACCAGCTGAAGGC 59.836 50.000 17.39 0.00 42.19 4.35
116 117 2.338140 GCTGAAGGCTAAACTTGTGC 57.662 50.000 0.00 0.00 38.06 4.57
117 118 1.068264 GCTGAAGGCTAAACTTGTGCC 60.068 52.381 0.00 0.00 46.42 5.01
125 126 5.931441 GGCTAAACTTGTGCCAGATATAG 57.069 43.478 0.00 0.00 45.46 1.31
126 127 4.214332 GGCTAAACTTGTGCCAGATATAGC 59.786 45.833 0.00 0.00 45.46 2.97
127 128 4.214332 GCTAAACTTGTGCCAGATATAGCC 59.786 45.833 0.00 0.00 0.00 3.93
128 129 2.938956 ACTTGTGCCAGATATAGCCC 57.061 50.000 0.00 0.00 0.00 5.19
129 130 2.126882 ACTTGTGCCAGATATAGCCCA 58.873 47.619 0.00 0.00 0.00 5.36
130 131 2.105477 ACTTGTGCCAGATATAGCCCAG 59.895 50.000 0.00 0.00 0.00 4.45
131 132 2.101640 TGTGCCAGATATAGCCCAGA 57.898 50.000 0.00 0.00 0.00 3.86
132 133 2.407562 TGTGCCAGATATAGCCCAGAA 58.592 47.619 0.00 0.00 0.00 3.02
133 134 2.981784 TGTGCCAGATATAGCCCAGAAT 59.018 45.455 0.00 0.00 0.00 2.40
134 135 4.167319 TGTGCCAGATATAGCCCAGAATA 58.833 43.478 0.00 0.00 0.00 1.75
135 136 4.597075 TGTGCCAGATATAGCCCAGAATAA 59.403 41.667 0.00 0.00 0.00 1.40
136 137 5.073008 TGTGCCAGATATAGCCCAGAATAAA 59.927 40.000 0.00 0.00 0.00 1.40
137 138 6.183347 GTGCCAGATATAGCCCAGAATAAAT 58.817 40.000 0.00 0.00 0.00 1.40
138 139 7.037658 TGTGCCAGATATAGCCCAGAATAAATA 60.038 37.037 0.00 0.00 0.00 1.40
139 140 7.995488 GTGCCAGATATAGCCCAGAATAAATAT 59.005 37.037 0.00 0.00 0.00 1.28
140 141 8.560039 TGCCAGATATAGCCCAGAATAAATATT 58.440 33.333 0.00 0.00 0.00 1.28
141 142 9.413734 GCCAGATATAGCCCAGAATAAATATTT 57.586 33.333 5.89 5.89 0.00 1.40
149 150 7.917003 AGCCCAGAATAAATATTTGGTTTTGT 58.083 30.769 11.05 0.00 0.00 2.83
150 151 8.382405 AGCCCAGAATAAATATTTGGTTTTGTT 58.618 29.630 11.05 0.00 0.00 2.83
151 152 8.450180 GCCCAGAATAAATATTTGGTTTTGTTG 58.550 33.333 11.05 6.20 0.00 3.33
152 153 8.450180 CCCAGAATAAATATTTGGTTTTGTTGC 58.550 33.333 11.05 0.00 0.00 4.17
153 154 8.997323 CCAGAATAAATATTTGGTTTTGTTGCA 58.003 29.630 11.05 0.00 0.00 4.08
189 190 9.748708 TTATTGGAAATGCTAAAACATAGATGC 57.251 29.630 0.00 0.00 0.00 3.91
190 191 6.147864 TGGAAATGCTAAAACATAGATGCC 57.852 37.500 0.00 0.00 0.00 4.40
191 192 5.893255 TGGAAATGCTAAAACATAGATGCCT 59.107 36.000 0.00 0.00 0.00 4.75
192 193 6.183360 TGGAAATGCTAAAACATAGATGCCTG 60.183 38.462 0.00 0.00 0.00 4.85
193 194 5.779529 AATGCTAAAACATAGATGCCTGG 57.220 39.130 0.00 0.00 0.00 4.45
194 195 4.502105 TGCTAAAACATAGATGCCTGGA 57.498 40.909 0.00 0.00 0.00 3.86
195 196 4.854173 TGCTAAAACATAGATGCCTGGAA 58.146 39.130 0.00 0.00 0.00 3.53
196 197 5.260424 TGCTAAAACATAGATGCCTGGAAA 58.740 37.500 0.00 0.00 0.00 3.13
197 198 5.893255 TGCTAAAACATAGATGCCTGGAAAT 59.107 36.000 0.00 0.00 0.00 2.17
198 199 6.380846 TGCTAAAACATAGATGCCTGGAAATT 59.619 34.615 0.00 0.00 0.00 1.82
199 200 7.093377 TGCTAAAACATAGATGCCTGGAAATTT 60.093 33.333 0.00 0.00 0.00 1.82
200 201 7.765819 GCTAAAACATAGATGCCTGGAAATTTT 59.234 33.333 0.00 0.00 0.00 1.82
201 202 9.657419 CTAAAACATAGATGCCTGGAAATTTTT 57.343 29.630 0.00 0.00 0.00 1.94
204 205 9.435688 AAACATAGATGCCTGGAAATTTTTAAC 57.564 29.630 0.00 0.00 0.00 2.01
205 206 7.257722 ACATAGATGCCTGGAAATTTTTAACG 58.742 34.615 0.00 0.00 0.00 3.18
206 207 5.722021 AGATGCCTGGAAATTTTTAACGT 57.278 34.783 0.00 0.00 0.00 3.99
207 208 5.709966 AGATGCCTGGAAATTTTTAACGTC 58.290 37.500 0.00 0.00 0.00 4.34
208 209 4.920640 TGCCTGGAAATTTTTAACGTCA 57.079 36.364 0.00 0.00 0.00 4.35
209 210 4.612943 TGCCTGGAAATTTTTAACGTCAC 58.387 39.130 0.00 0.00 0.00 3.67
210 211 4.098044 TGCCTGGAAATTTTTAACGTCACA 59.902 37.500 0.00 0.00 0.00 3.58
211 212 5.044558 GCCTGGAAATTTTTAACGTCACAA 58.955 37.500 0.00 0.00 0.00 3.33
212 213 5.520649 GCCTGGAAATTTTTAACGTCACAAA 59.479 36.000 0.00 0.00 0.00 2.83
213 214 6.508880 GCCTGGAAATTTTTAACGTCACAAAC 60.509 38.462 0.00 0.00 0.00 2.93
214 215 6.531948 CCTGGAAATTTTTAACGTCACAAACA 59.468 34.615 0.00 0.00 0.00 2.83
215 216 7.279470 TGGAAATTTTTAACGTCACAAACAC 57.721 32.000 0.00 0.00 0.00 3.32
216 217 7.091443 TGGAAATTTTTAACGTCACAAACACT 58.909 30.769 0.00 0.00 0.00 3.55
217 218 7.599245 TGGAAATTTTTAACGTCACAAACACTT 59.401 29.630 0.00 0.00 0.00 3.16
218 219 8.436970 GGAAATTTTTAACGTCACAAACACTTT 58.563 29.630 0.00 0.00 0.00 2.66
219 220 9.800299 GAAATTTTTAACGTCACAAACACTTTT 57.200 25.926 0.00 0.00 0.00 2.27
244 245 7.701809 TTTTTCATTAATTGGTGTTTCGGTC 57.298 32.000 0.00 0.00 0.00 4.79
245 246 4.671880 TCATTAATTGGTGTTTCGGTCG 57.328 40.909 0.00 0.00 0.00 4.79
246 247 2.973419 TTAATTGGTGTTTCGGTCGC 57.027 45.000 0.00 0.00 0.00 5.19
247 248 2.172851 TAATTGGTGTTTCGGTCGCT 57.827 45.000 0.00 0.00 0.00 4.93
248 249 0.872388 AATTGGTGTTTCGGTCGCTC 59.128 50.000 0.00 0.00 0.00 5.03
249 250 0.034896 ATTGGTGTTTCGGTCGCTCT 59.965 50.000 0.00 0.00 0.00 4.09
250 251 0.878523 TTGGTGTTTCGGTCGCTCTG 60.879 55.000 0.00 0.00 0.00 3.35
251 252 1.300697 GGTGTTTCGGTCGCTCTGT 60.301 57.895 0.00 0.00 0.00 3.41
252 253 1.557443 GGTGTTTCGGTCGCTCTGTG 61.557 60.000 0.00 0.00 0.00 3.66
253 254 0.596600 GTGTTTCGGTCGCTCTGTGA 60.597 55.000 0.00 0.00 0.00 3.58
254 255 0.317160 TGTTTCGGTCGCTCTGTGAT 59.683 50.000 0.00 0.00 0.00 3.06
255 256 0.716108 GTTTCGGTCGCTCTGTGATG 59.284 55.000 0.00 0.00 0.00 3.07
256 257 0.601057 TTTCGGTCGCTCTGTGATGA 59.399 50.000 0.00 0.00 0.00 2.92
257 258 0.601057 TTCGGTCGCTCTGTGATGAA 59.399 50.000 0.00 0.00 0.00 2.57
258 259 0.171231 TCGGTCGCTCTGTGATGAAG 59.829 55.000 0.00 0.00 0.00 3.02
259 260 0.109086 CGGTCGCTCTGTGATGAAGT 60.109 55.000 0.00 0.00 0.00 3.01
260 261 1.670087 CGGTCGCTCTGTGATGAAGTT 60.670 52.381 0.00 0.00 0.00 2.66
261 262 2.417719 GGTCGCTCTGTGATGAAGTTT 58.582 47.619 0.00 0.00 0.00 2.66
262 263 2.413453 GGTCGCTCTGTGATGAAGTTTC 59.587 50.000 0.00 0.00 0.00 2.78
263 264 3.059884 GTCGCTCTGTGATGAAGTTTCA 58.940 45.455 0.00 0.00 42.14 2.69
290 291 9.854668 TCCACTTATATGGAATCGGAAATAAAA 57.145 29.630 0.00 0.00 46.08 1.52
300 301 9.685828 TGGAATCGGAAATAAAAGTTACTTTTG 57.314 29.630 27.26 13.24 42.61 2.44
301 302 8.644619 GGAATCGGAAATAAAAGTTACTTTTGC 58.355 33.333 27.26 15.74 42.61 3.68
302 303 9.187455 GAATCGGAAATAAAAGTTACTTTTGCA 57.813 29.630 27.26 13.06 42.61 4.08
303 304 8.742554 ATCGGAAATAAAAGTTACTTTTGCAG 57.257 30.769 27.26 16.11 42.61 4.41
304 305 7.708998 TCGGAAATAAAAGTTACTTTTGCAGT 58.291 30.769 27.26 13.25 42.61 4.40
305 306 7.858879 TCGGAAATAAAAGTTACTTTTGCAGTC 59.141 33.333 27.26 18.93 42.61 3.51
306 307 7.646130 CGGAAATAAAAGTTACTTTTGCAGTCA 59.354 33.333 27.26 11.14 42.61 3.41
307 308 8.752254 GGAAATAAAAGTTACTTTTGCAGTCAC 58.248 33.333 27.26 14.13 42.61 3.67
308 309 9.296400 GAAATAAAAGTTACTTTTGCAGTCACA 57.704 29.630 27.26 9.88 42.61 3.58
309 310 8.628882 AATAAAAGTTACTTTTGCAGTCACAC 57.371 30.769 27.26 0.00 42.61 3.82
310 311 5.897377 AAAGTTACTTTTGCAGTCACACT 57.103 34.783 4.30 0.00 36.88 3.55
311 312 5.897377 AAGTTACTTTTGCAGTCACACTT 57.103 34.783 0.00 0.00 36.88 3.16
312 313 5.897377 AGTTACTTTTGCAGTCACACTTT 57.103 34.783 0.00 0.00 36.88 2.66
313 314 6.995511 AGTTACTTTTGCAGTCACACTTTA 57.004 33.333 0.00 0.00 36.88 1.85
314 315 7.385778 AGTTACTTTTGCAGTCACACTTTAA 57.614 32.000 0.00 0.00 36.88 1.52
315 316 7.248437 AGTTACTTTTGCAGTCACACTTTAAC 58.752 34.615 0.00 0.00 36.88 2.01
316 317 5.637006 ACTTTTGCAGTCACACTTTAACA 57.363 34.783 0.00 0.00 0.00 2.41
317 318 5.640732 ACTTTTGCAGTCACACTTTAACAG 58.359 37.500 0.00 0.00 0.00 3.16
318 319 5.414454 ACTTTTGCAGTCACACTTTAACAGA 59.586 36.000 0.00 0.00 0.00 3.41
319 320 6.095440 ACTTTTGCAGTCACACTTTAACAGAT 59.905 34.615 0.00 0.00 0.00 2.90
320 321 6.449635 TTTGCAGTCACACTTTAACAGATT 57.550 33.333 0.00 0.00 0.00 2.40
321 322 7.561021 TTTGCAGTCACACTTTAACAGATTA 57.439 32.000 0.00 0.00 0.00 1.75
322 323 6.785488 TGCAGTCACACTTTAACAGATTAG 57.215 37.500 0.00 0.00 0.00 1.73
323 324 5.700832 TGCAGTCACACTTTAACAGATTAGG 59.299 40.000 0.00 0.00 0.00 2.69
324 325 5.932303 GCAGTCACACTTTAACAGATTAGGA 59.068 40.000 0.00 0.00 0.00 2.94
325 326 6.091441 GCAGTCACACTTTAACAGATTAGGAG 59.909 42.308 0.00 0.00 0.00 3.69
326 327 6.091441 CAGTCACACTTTAACAGATTAGGAGC 59.909 42.308 0.00 0.00 0.00 4.70
327 328 5.351740 GTCACACTTTAACAGATTAGGAGCC 59.648 44.000 0.00 0.00 0.00 4.70
328 329 4.330074 CACACTTTAACAGATTAGGAGCCG 59.670 45.833 0.00 0.00 0.00 5.52
329 330 4.222145 ACACTTTAACAGATTAGGAGCCGA 59.778 41.667 0.00 0.00 0.00 5.54
330 331 5.175859 CACTTTAACAGATTAGGAGCCGAA 58.824 41.667 0.00 0.00 0.00 4.30
331 332 5.642063 CACTTTAACAGATTAGGAGCCGAAA 59.358 40.000 0.00 0.00 0.00 3.46
332 333 5.642491 ACTTTAACAGATTAGGAGCCGAAAC 59.358 40.000 0.00 0.00 0.00 2.78
333 334 2.693267 ACAGATTAGGAGCCGAAACC 57.307 50.000 0.00 0.00 0.00 3.27
334 335 1.134788 ACAGATTAGGAGCCGAAACCG 60.135 52.381 0.00 0.00 0.00 4.44
335 336 1.134788 CAGATTAGGAGCCGAAACCGT 60.135 52.381 0.00 0.00 0.00 4.83
336 337 2.100252 CAGATTAGGAGCCGAAACCGTA 59.900 50.000 0.00 0.00 0.00 4.02
337 338 2.361438 AGATTAGGAGCCGAAACCGTAG 59.639 50.000 0.00 0.00 0.00 3.51
338 339 1.838112 TTAGGAGCCGAAACCGTAGA 58.162 50.000 0.00 0.00 0.00 2.59
339 340 1.838112 TAGGAGCCGAAACCGTAGAA 58.162 50.000 0.00 0.00 0.00 2.10
340 341 1.192428 AGGAGCCGAAACCGTAGAAT 58.808 50.000 0.00 0.00 0.00 2.40
341 342 2.381911 AGGAGCCGAAACCGTAGAATA 58.618 47.619 0.00 0.00 0.00 1.75
342 343 2.762327 AGGAGCCGAAACCGTAGAATAA 59.238 45.455 0.00 0.00 0.00 1.40
343 344 3.387050 AGGAGCCGAAACCGTAGAATAAT 59.613 43.478 0.00 0.00 0.00 1.28
344 345 4.124970 GGAGCCGAAACCGTAGAATAATT 58.875 43.478 0.00 0.00 0.00 1.40
345 346 4.025145 GGAGCCGAAACCGTAGAATAATTG 60.025 45.833 0.00 0.00 0.00 2.32
346 347 4.510571 AGCCGAAACCGTAGAATAATTGT 58.489 39.130 0.00 0.00 0.00 2.71
347 348 4.939439 AGCCGAAACCGTAGAATAATTGTT 59.061 37.500 0.00 0.00 0.00 2.83
348 349 5.064325 AGCCGAAACCGTAGAATAATTGTTC 59.936 40.000 6.82 6.82 0.00 3.18
349 350 5.064325 GCCGAAACCGTAGAATAATTGTTCT 59.936 40.000 19.65 19.65 41.18 3.01
350 351 6.256321 GCCGAAACCGTAGAATAATTGTTCTA 59.744 38.462 17.78 17.78 39.15 2.10
351 352 7.042254 GCCGAAACCGTAGAATAATTGTTCTAT 60.042 37.037 22.66 10.28 41.34 1.98
352 353 8.273557 CCGAAACCGTAGAATAATTGTTCTATG 58.726 37.037 25.85 25.85 42.96 2.23
405 406 9.216117 ACAAAAGATAATACAACTAGTGTCACC 57.784 33.333 0.00 0.00 41.98 4.02
406 407 8.665685 CAAAAGATAATACAACTAGTGTCACCC 58.334 37.037 0.00 0.00 41.98 4.61
407 408 7.490657 AAGATAATACAACTAGTGTCACCCA 57.509 36.000 0.00 0.00 41.98 4.51
408 409 7.490657 AGATAATACAACTAGTGTCACCCAA 57.509 36.000 0.00 0.00 41.98 4.12
409 410 8.090788 AGATAATACAACTAGTGTCACCCAAT 57.909 34.615 0.00 0.00 41.98 3.16
410 411 9.209048 AGATAATACAACTAGTGTCACCCAATA 57.791 33.333 0.00 0.00 41.98 1.90
411 412 9.257651 GATAATACAACTAGTGTCACCCAATAC 57.742 37.037 0.00 0.00 41.98 1.89
412 413 4.281898 ACAACTAGTGTCACCCAATACC 57.718 45.455 0.00 0.00 34.38 2.73
413 414 3.649023 ACAACTAGTGTCACCCAATACCA 59.351 43.478 0.00 0.00 34.38 3.25
414 415 4.253685 CAACTAGTGTCACCCAATACCAG 58.746 47.826 0.00 0.00 0.00 4.00
415 416 3.517612 ACTAGTGTCACCCAATACCAGT 58.482 45.455 0.00 0.00 0.00 4.00
416 417 3.908103 ACTAGTGTCACCCAATACCAGTT 59.092 43.478 0.00 0.00 0.00 3.16
417 418 3.418684 AGTGTCACCCAATACCAGTTC 57.581 47.619 0.00 0.00 0.00 3.01
418 419 2.979678 AGTGTCACCCAATACCAGTTCT 59.020 45.455 0.00 0.00 0.00 3.01
419 420 4.164981 AGTGTCACCCAATACCAGTTCTA 58.835 43.478 0.00 0.00 0.00 2.10
420 421 4.223032 AGTGTCACCCAATACCAGTTCTAG 59.777 45.833 0.00 0.00 0.00 2.43
421 422 3.517901 TGTCACCCAATACCAGTTCTAGG 59.482 47.826 0.00 0.00 0.00 3.02
422 423 3.773119 GTCACCCAATACCAGTTCTAGGA 59.227 47.826 0.00 0.00 0.00 2.94
423 424 4.224370 GTCACCCAATACCAGTTCTAGGAA 59.776 45.833 0.00 0.00 0.00 3.36
424 425 4.847512 TCACCCAATACCAGTTCTAGGAAA 59.152 41.667 0.00 0.00 0.00 3.13
425 426 4.941873 CACCCAATACCAGTTCTAGGAAAC 59.058 45.833 0.00 0.00 0.00 2.78
426 427 4.600111 ACCCAATACCAGTTCTAGGAAACA 59.400 41.667 0.00 0.00 0.00 2.83
427 428 5.253096 ACCCAATACCAGTTCTAGGAAACAT 59.747 40.000 0.00 0.00 0.00 2.71
428 429 6.187682 CCCAATACCAGTTCTAGGAAACATT 58.812 40.000 0.00 0.00 0.00 2.71
429 430 7.037153 ACCCAATACCAGTTCTAGGAAACATTA 60.037 37.037 0.00 0.00 0.00 1.90
430 431 7.832187 CCCAATACCAGTTCTAGGAAACATTAA 59.168 37.037 0.00 0.00 0.00 1.40
431 432 9.238368 CCAATACCAGTTCTAGGAAACATTAAA 57.762 33.333 0.00 0.00 0.00 1.52
435 436 8.762481 ACCAGTTCTAGGAAACATTAAAAGTT 57.238 30.769 0.00 0.00 0.00 2.66
436 437 9.197306 ACCAGTTCTAGGAAACATTAAAAGTTT 57.803 29.630 8.59 8.59 41.53 2.66
441 442 8.865590 TCTAGGAAACATTAAAAGTTTTGTGC 57.134 30.769 11.18 0.00 39.15 4.57
442 443 8.691797 TCTAGGAAACATTAAAAGTTTTGTGCT 58.308 29.630 11.18 5.32 39.15 4.40
443 444 9.959749 CTAGGAAACATTAAAAGTTTTGTGCTA 57.040 29.630 11.18 6.02 39.15 3.49
445 446 9.476202 AGGAAACATTAAAAGTTTTGTGCTATC 57.524 29.630 11.18 8.44 39.15 2.08
446 447 8.708742 GGAAACATTAAAAGTTTTGTGCTATCC 58.291 33.333 11.18 12.45 39.15 2.59
447 448 9.255304 GAAACATTAAAAGTTTTGTGCTATCCA 57.745 29.630 11.18 0.00 39.15 3.41
448 449 9.606631 AAACATTAAAAGTTTTGTGCTATCCAA 57.393 25.926 11.18 0.00 35.81 3.53
449 450 9.606631 AACATTAAAAGTTTTGTGCTATCCAAA 57.393 25.926 11.18 0.00 0.00 3.28
450 451 9.777297 ACATTAAAAGTTTTGTGCTATCCAAAT 57.223 25.926 11.18 0.00 32.28 2.32
453 454 9.606631 TTAAAAGTTTTGTGCTATCCAAATTGT 57.393 25.926 11.18 0.00 32.28 2.71
454 455 7.481275 AAAGTTTTGTGCTATCCAAATTGTG 57.519 32.000 0.00 0.00 32.28 3.33
455 456 6.403866 AGTTTTGTGCTATCCAAATTGTGA 57.596 33.333 0.00 0.00 32.28 3.58
456 457 6.996509 AGTTTTGTGCTATCCAAATTGTGAT 58.003 32.000 0.00 0.00 32.28 3.06
457 458 7.092716 AGTTTTGTGCTATCCAAATTGTGATC 58.907 34.615 1.28 0.00 32.28 2.92
458 459 6.839124 TTTGTGCTATCCAAATTGTGATCT 57.161 33.333 0.00 0.00 0.00 2.75
459 460 7.936496 TTTGTGCTATCCAAATTGTGATCTA 57.064 32.000 0.00 0.00 0.00 1.98
460 461 7.936496 TTGTGCTATCCAAATTGTGATCTAA 57.064 32.000 0.00 0.00 0.00 2.10
461 462 7.936496 TGTGCTATCCAAATTGTGATCTAAA 57.064 32.000 0.00 0.00 0.00 1.85
462 463 7.761409 TGTGCTATCCAAATTGTGATCTAAAC 58.239 34.615 0.00 0.00 0.00 2.01
463 464 7.392953 TGTGCTATCCAAATTGTGATCTAAACA 59.607 33.333 0.00 0.00 0.00 2.83
464 465 7.698130 GTGCTATCCAAATTGTGATCTAAACAC 59.302 37.037 0.00 0.00 38.55 3.32
465 466 7.611467 TGCTATCCAAATTGTGATCTAAACACT 59.389 33.333 0.00 0.00 38.81 3.55
466 467 8.125448 GCTATCCAAATTGTGATCTAAACACTC 58.875 37.037 0.00 0.00 38.81 3.51
467 468 6.480524 TCCAAATTGTGATCTAAACACTCG 57.519 37.500 0.00 0.00 38.81 4.18
468 469 5.088739 CCAAATTGTGATCTAAACACTCGC 58.911 41.667 0.00 0.00 38.81 5.03
469 470 4.946784 AATTGTGATCTAAACACTCGCC 57.053 40.909 0.00 0.00 38.81 5.54
470 471 2.380084 TGTGATCTAAACACTCGCCC 57.620 50.000 0.00 0.00 38.81 6.13
471 472 1.621317 TGTGATCTAAACACTCGCCCA 59.379 47.619 0.00 0.00 38.81 5.36
472 473 2.236146 TGTGATCTAAACACTCGCCCAT 59.764 45.455 0.00 0.00 38.81 4.00
473 474 2.866762 GTGATCTAAACACTCGCCCATC 59.133 50.000 0.00 0.00 35.66 3.51
474 475 2.158957 TGATCTAAACACTCGCCCATCC 60.159 50.000 0.00 0.00 0.00 3.51
475 476 1.568504 TCTAAACACTCGCCCATCCT 58.431 50.000 0.00 0.00 0.00 3.24
476 477 2.742348 TCTAAACACTCGCCCATCCTA 58.258 47.619 0.00 0.00 0.00 2.94
477 478 3.305720 TCTAAACACTCGCCCATCCTAT 58.694 45.455 0.00 0.00 0.00 2.57
478 479 4.476297 TCTAAACACTCGCCCATCCTATA 58.524 43.478 0.00 0.00 0.00 1.31
479 480 3.753294 AAACACTCGCCCATCCTATAG 57.247 47.619 0.00 0.00 0.00 1.31
480 481 2.677542 ACACTCGCCCATCCTATAGA 57.322 50.000 0.00 0.00 0.00 1.98
481 482 2.520069 ACACTCGCCCATCCTATAGAG 58.480 52.381 0.00 0.00 0.00 2.43
482 483 2.158445 ACACTCGCCCATCCTATAGAGT 60.158 50.000 0.00 0.00 39.24 3.24
483 484 3.074094 ACACTCGCCCATCCTATAGAGTA 59.926 47.826 0.00 0.00 36.90 2.59
484 485 4.079970 CACTCGCCCATCCTATAGAGTAA 58.920 47.826 0.00 0.00 36.90 2.24
485 486 4.156922 CACTCGCCCATCCTATAGAGTAAG 59.843 50.000 0.00 0.00 36.90 2.34
486 487 3.090037 TCGCCCATCCTATAGAGTAAGC 58.910 50.000 0.00 0.00 0.00 3.09
487 488 3.093057 CGCCCATCCTATAGAGTAAGCT 58.907 50.000 0.00 0.00 0.00 3.74
488 489 3.511934 CGCCCATCCTATAGAGTAAGCTT 59.488 47.826 3.48 3.48 0.00 3.74
497 498 9.959721 ATCCTATAGAGTAAGCTTTCAAAAACA 57.040 29.630 3.20 0.00 0.00 2.83
502 503 7.027778 AGAGTAAGCTTTCAAAAACATTCGT 57.972 32.000 3.20 0.00 0.00 3.85
503 504 8.149973 AGAGTAAGCTTTCAAAAACATTCGTA 57.850 30.769 3.20 0.00 0.00 3.43
506 507 9.575783 AGTAAGCTTTCAAAAACATTCGTAAAA 57.424 25.926 3.20 0.00 0.00 1.52
574 604 4.801330 ATGATCTAAGTGTCCAACGACA 57.199 40.909 0.00 0.00 46.91 4.35
591 621 2.864343 CGACAAGAGAAACAACTCGGTT 59.136 45.455 0.00 0.00 41.25 4.44
592 622 3.060473 CGACAAGAGAAACAACTCGGTTC 60.060 47.826 0.00 0.00 41.25 3.62
593 623 3.203716 ACAAGAGAAACAACTCGGTTCC 58.796 45.455 0.00 0.00 41.25 3.62
594 624 3.202906 CAAGAGAAACAACTCGGTTCCA 58.797 45.455 0.00 0.00 41.25 3.53
596 626 3.467803 AGAGAAACAACTCGGTTCCAAG 58.532 45.455 0.00 0.00 41.25 3.61
597 627 3.118371 AGAGAAACAACTCGGTTCCAAGT 60.118 43.478 0.00 0.00 41.25 3.16
598 628 2.943033 AGAAACAACTCGGTTCCAAGTG 59.057 45.455 0.00 0.00 0.00 3.16
599 629 1.675552 AACAACTCGGTTCCAAGTGG 58.324 50.000 0.00 0.00 0.00 4.00
600 630 0.818040 ACAACTCGGTTCCAAGTGGC 60.818 55.000 0.00 0.00 34.44 5.01
601 631 1.228154 AACTCGGTTCCAAGTGGCC 60.228 57.895 0.00 0.00 34.44 5.36
602 632 2.359975 CTCGGTTCCAAGTGGCCC 60.360 66.667 0.00 0.00 34.44 5.80
605 635 4.280019 GGTTCCAAGTGGCCCGGT 62.280 66.667 0.00 0.00 34.44 5.28
606 636 2.671963 GTTCCAAGTGGCCCGGTC 60.672 66.667 0.00 0.00 34.44 4.79
617 647 2.593436 CCCGGTCGGCAAAAGTGT 60.593 61.111 0.00 0.00 0.00 3.55
618 648 2.637025 CCGGTCGGCAAAAGTGTG 59.363 61.111 0.00 0.00 0.00 3.82
619 649 2.637025 CGGTCGGCAAAAGTGTGG 59.363 61.111 0.00 0.00 0.00 4.17
621 651 1.826487 GGTCGGCAAAAGTGTGGGT 60.826 57.895 0.00 0.00 0.00 4.51
622 652 1.358759 GTCGGCAAAAGTGTGGGTG 59.641 57.895 0.00 0.00 0.00 4.61
625 793 1.795170 CGGCAAAAGTGTGGGTGAGG 61.795 60.000 0.00 0.00 0.00 3.86
653 821 1.364536 CATTGGCACTTGCACAGCA 59.635 52.632 3.15 0.00 44.36 4.41
654 822 0.666274 CATTGGCACTTGCACAGCAG 60.666 55.000 3.15 0.00 44.36 4.24
655 823 2.430382 ATTGGCACTTGCACAGCAGC 62.430 55.000 3.15 6.12 44.36 5.25
656 824 3.292936 GGCACTTGCACAGCAGCT 61.293 61.111 3.15 0.00 44.36 4.24
657 825 1.968017 GGCACTTGCACAGCAGCTA 60.968 57.895 3.15 0.00 44.36 3.32
658 826 1.208614 GCACTTGCACAGCAGCTAC 59.791 57.895 0.00 0.00 40.61 3.58
659 827 1.509644 GCACTTGCACAGCAGCTACA 61.510 55.000 0.00 0.00 40.61 2.74
660 828 0.946528 CACTTGCACAGCAGCTACAA 59.053 50.000 0.00 0.00 40.61 2.41
718 919 4.322273 GGCGGAGATATCACATGAGATTGA 60.322 45.833 11.02 0.00 0.00 2.57
725 926 7.100409 AGATATCACATGAGATTGATGAGCAG 58.900 38.462 11.02 0.00 34.28 4.24
726 927 4.482952 TCACATGAGATTGATGAGCAGT 57.517 40.909 0.00 0.00 0.00 4.40
727 928 4.189231 TCACATGAGATTGATGAGCAGTG 58.811 43.478 0.00 0.00 0.00 3.66
728 929 3.312697 CACATGAGATTGATGAGCAGTGG 59.687 47.826 0.00 0.00 0.00 4.00
729 930 2.704464 TGAGATTGATGAGCAGTGGG 57.296 50.000 0.00 0.00 0.00 4.61
732 933 0.257039 GATTGATGAGCAGTGGGGGT 59.743 55.000 0.00 0.00 0.00 4.95
735 936 2.532715 ATGAGCAGTGGGGGTGGT 60.533 61.111 0.00 0.00 0.00 4.16
737 938 4.351054 GAGCAGTGGGGGTGGTGG 62.351 72.222 0.00 0.00 0.00 4.61
756 972 2.659897 CGGCGGCTATGAGTGCTC 60.660 66.667 7.61 0.00 0.00 4.26
841 1067 3.406361 CTCGCTGACGCCACACAC 61.406 66.667 0.00 0.00 39.84 3.82
906 1141 3.760035 CGACCCCCTCCGTCTGTG 61.760 72.222 0.00 0.00 0.00 3.66
907 1142 2.603776 GACCCCCTCCGTCTGTGT 60.604 66.667 0.00 0.00 0.00 3.72
908 1143 1.304713 GACCCCCTCCGTCTGTGTA 60.305 63.158 0.00 0.00 0.00 2.90
909 1144 1.602327 GACCCCCTCCGTCTGTGTAC 61.602 65.000 0.00 0.00 0.00 2.90
936 1173 4.521062 CGCTTCTGCCCCTCGAGG 62.521 72.222 25.36 25.36 35.36 4.63
937 1174 3.394836 GCTTCTGCCCCTCGAGGT 61.395 66.667 29.25 0.00 0.00 3.85
938 1175 2.581354 CTTCTGCCCCTCGAGGTG 59.419 66.667 29.25 20.42 0.00 4.00
953 1191 3.578272 GTGCGCAACAACCACGGA 61.578 61.111 14.00 0.00 0.00 4.69
954 1192 2.824489 TGCGCAACAACCACGGAA 60.824 55.556 8.16 0.00 0.00 4.30
987 1225 1.849097 CGCTAACGGACAAGATACCC 58.151 55.000 0.00 0.00 34.97 3.69
991 1229 0.909623 AACGGACAAGATACCCTGGG 59.090 55.000 12.28 12.28 0.00 4.45
1012 1250 1.954146 ATATAAGCACACGCCCGCG 60.954 57.895 7.69 7.69 46.03 6.46
1054 1296 4.838904 TCGATCCCCGAGATAGATTCTA 57.161 45.455 0.00 0.00 43.23 2.10
1071 1319 2.515854 TCTAGTCTGGTCCAGTGTGTC 58.484 52.381 18.65 5.88 32.61 3.67
1097 1349 1.209261 GCTTCTCCCTTCCTCTTCTGG 59.791 57.143 0.00 0.00 0.00 3.86
1110 1418 0.530650 CTTCTGGTCGTGTGTGCAGT 60.531 55.000 0.00 0.00 0.00 4.40
1355 1668 0.821517 ATCAACCGATCACCGCTGTA 59.178 50.000 0.00 0.00 36.84 2.74
1356 1669 0.821517 TCAACCGATCACCGCTGTAT 59.178 50.000 0.00 0.00 36.84 2.29
1357 1670 0.930310 CAACCGATCACCGCTGTATG 59.070 55.000 0.00 0.00 36.84 2.39
1358 1671 0.535335 AACCGATCACCGCTGTATGT 59.465 50.000 0.00 0.00 36.84 2.29
1753 2177 1.672881 CCATCCCACTTGCTTCGATTC 59.327 52.381 0.00 0.00 0.00 2.52
1755 2179 2.099141 TCCCACTTGCTTCGATTCAG 57.901 50.000 0.00 0.00 0.00 3.02
1769 2193 2.292016 CGATTCAGTAGTCGATCAGGCT 59.708 50.000 0.00 0.00 40.11 4.58
1772 2196 1.751351 TCAGTAGTCGATCAGGCTTGG 59.249 52.381 0.00 0.00 35.65 3.61
1773 2197 1.751351 CAGTAGTCGATCAGGCTTGGA 59.249 52.381 0.00 0.00 35.65 3.53
1774 2198 1.751924 AGTAGTCGATCAGGCTTGGAC 59.248 52.381 0.00 0.00 35.65 4.02
1779 2203 0.108615 CGATCAGGCTTGGACGACTT 60.109 55.000 9.11 0.00 0.00 3.01
1781 2205 2.416836 CGATCAGGCTTGGACGACTTTA 60.417 50.000 9.11 0.00 0.00 1.85
1785 2209 1.348036 AGGCTTGGACGACTTTAGCTT 59.652 47.619 0.00 0.00 32.58 3.74
1792 2216 3.054878 GGACGACTTTAGCTTTCGTTCA 58.945 45.455 11.96 0.00 45.63 3.18
1894 2322 4.455906 CCCGCCCATGCTTTTGCC 62.456 66.667 0.00 0.00 46.87 4.52
1898 2326 2.036571 GCCCATGCTTTTGCCTTGC 61.037 57.895 0.00 0.00 46.87 4.01
1992 2440 6.412362 TTGCCCTCTTATCTTAGATCACTC 57.588 41.667 0.00 0.00 0.00 3.51
1995 2443 5.047377 GCCCTCTTATCTTAGATCACTCTGG 60.047 48.000 0.00 0.00 32.66 3.86
2009 2461 8.093118 AGATCACTCTGGTTAGTAGTACTAGT 57.907 38.462 14.57 14.57 31.47 2.57
2010 2462 9.211410 AGATCACTCTGGTTAGTAGTACTAGTA 57.789 37.037 12.58 12.58 31.47 1.82
2011 2463 9.260002 GATCACTCTGGTTAGTAGTACTAGTAC 57.740 40.741 23.03 23.03 31.47 2.73
2041 2493 3.333029 AACATCGACCACATCACATCA 57.667 42.857 0.00 0.00 0.00 3.07
2077 2553 6.428159 AGTGAACACGAGAGATGCTTAATTTT 59.572 34.615 0.00 0.00 36.20 1.82
2084 2560 6.072508 ACGAGAGATGCTTAATTTTGCTTTCA 60.073 34.615 0.00 0.00 0.00 2.69
2228 2733 1.066858 CGATAAGGATAGGCATGGCGT 60.067 52.381 14.30 6.77 0.00 5.68
2284 2813 0.773644 AGTTGGATGACTGGGTGCTT 59.226 50.000 0.00 0.00 0.00 3.91
2608 3137 0.779997 ACCCTTCCCTGAACATGCTT 59.220 50.000 0.00 0.00 0.00 3.91
2872 3416 9.218359 GCTGTAATTAAATTTAACTTAGTCGGC 57.782 33.333 12.74 11.97 0.00 5.54
2914 3459 5.122239 CGACATGAAACAATCTTAGGCTTCA 59.878 40.000 0.00 0.00 0.00 3.02
3089 3639 4.161565 CCAGGTAAATAGTGCAGAGGTACA 59.838 45.833 0.00 0.00 31.27 2.90
3122 3672 1.587043 GAAGGAGAGGGCGGCAAAAC 61.587 60.000 12.47 0.00 0.00 2.43
3130 3680 1.302993 GGCGGCAAAACCCTCTGTA 60.303 57.895 3.07 0.00 33.26 2.74
3131 3681 0.679960 GGCGGCAAAACCCTCTGTAT 60.680 55.000 3.07 0.00 33.26 2.29
3132 3682 0.733150 GCGGCAAAACCCTCTGTATC 59.267 55.000 0.00 0.00 33.26 2.24
3133 3683 1.006832 CGGCAAAACCCTCTGTATCG 58.993 55.000 0.00 0.00 33.26 2.92
3134 3684 1.404986 CGGCAAAACCCTCTGTATCGA 60.405 52.381 0.00 0.00 33.26 3.59
3140 3690 5.572896 GCAAAACCCTCTGTATCGATTTTTG 59.427 40.000 17.31 17.31 36.32 2.44
3147 3697 6.294508 CCCTCTGTATCGATTTTTGTTTGGTT 60.295 38.462 1.71 0.00 0.00 3.67
3149 3699 7.265647 TCTGTATCGATTTTTGTTTGGTTCA 57.734 32.000 1.71 0.00 0.00 3.18
3150 3700 7.708051 TCTGTATCGATTTTTGTTTGGTTCAA 58.292 30.769 1.71 0.00 0.00 2.69
3186 3889 3.845178 TGGAGTGTGTAAACAGCTATCG 58.155 45.455 0.00 0.00 0.00 2.92
3224 3927 5.747951 TTTTGCCAATTTTTGCGAGAAAT 57.252 30.435 0.00 0.00 0.00 2.17
3252 3955 8.947055 TTTGATCTATTCATCTTCAATCACGA 57.053 30.769 0.00 0.00 33.34 4.35
3395 4098 3.131577 AGTCGGTCACAACTTGTTGTAGA 59.868 43.478 17.26 14.00 33.17 2.59
3423 4126 0.524862 GGGAAGTCGTCGTGCTAAGA 59.475 55.000 0.00 0.00 0.00 2.10
3432 4135 2.089980 GTCGTGCTAAGACCCTGTAGA 58.910 52.381 0.00 0.00 32.78 2.59
3462 4165 3.959975 GAACAGCAACCGCCGCAA 61.960 61.111 0.00 0.00 39.83 4.85
3472 4175 0.171007 ACCGCCGCAAATGAAGAATG 59.829 50.000 0.00 0.00 0.00 2.67
3480 4183 4.492570 CCGCAAATGAAGAATGACGTAGAC 60.493 45.833 0.00 0.00 0.00 2.59
3557 4260 6.095440 CCGAACAAATCCACCAAAGATAGATT 59.905 38.462 0.00 0.00 0.00 2.40
3680 4383 1.270826 CGTCTTGTCTTCCTGAGCAGA 59.729 52.381 0.00 0.00 0.00 4.26
3701 4404 4.709886 AGAACACAAACCCTAGCAAAACTT 59.290 37.500 0.00 0.00 0.00 2.66
3825 4533 1.522569 CGGGAGGCAGAAACCCTAG 59.477 63.158 0.00 0.00 41.28 3.02
3826 4534 0.976073 CGGGAGGCAGAAACCCTAGA 60.976 60.000 0.00 0.00 41.28 2.43
3828 4537 1.418264 GGGAGGCAGAAACCCTAGATC 59.582 57.143 0.00 0.00 40.39 2.75
3873 4583 3.703420 CGGCTAGCAAATAGTAACGTCT 58.297 45.455 18.24 0.00 33.65 4.18
3874 4584 3.486108 CGGCTAGCAAATAGTAACGTCTG 59.514 47.826 18.24 0.00 33.65 3.51
3875 4585 4.430908 GGCTAGCAAATAGTAACGTCTGT 58.569 43.478 18.24 0.00 33.65 3.41
3876 4586 4.267928 GGCTAGCAAATAGTAACGTCTGTG 59.732 45.833 18.24 0.00 33.65 3.66
3877 4587 4.259850 GCTAGCAAATAGTAACGTCTGTGC 60.260 45.833 10.63 0.00 33.65 4.57
3878 4588 3.000727 AGCAAATAGTAACGTCTGTGCC 58.999 45.455 0.00 0.00 0.00 5.01
3879 4589 2.095372 GCAAATAGTAACGTCTGTGCCC 59.905 50.000 0.00 0.00 0.00 5.36
3880 4590 3.331150 CAAATAGTAACGTCTGTGCCCA 58.669 45.455 0.00 0.00 0.00 5.36
3881 4591 3.688694 AATAGTAACGTCTGTGCCCAA 57.311 42.857 0.00 0.00 0.00 4.12
3882 4592 3.906720 ATAGTAACGTCTGTGCCCAAT 57.093 42.857 0.00 0.00 0.00 3.16
3883 4593 2.094762 AGTAACGTCTGTGCCCAATC 57.905 50.000 0.00 0.00 0.00 2.67
3884 4594 1.623811 AGTAACGTCTGTGCCCAATCT 59.376 47.619 0.00 0.00 0.00 2.40
3885 4595 2.038557 AGTAACGTCTGTGCCCAATCTT 59.961 45.455 0.00 0.00 0.00 2.40
3886 4596 1.981256 AACGTCTGTGCCCAATCTTT 58.019 45.000 0.00 0.00 0.00 2.52
3887 4597 2.851263 ACGTCTGTGCCCAATCTTTA 57.149 45.000 0.00 0.00 0.00 1.85
3890 4600 4.079253 ACGTCTGTGCCCAATCTTTATTT 58.921 39.130 0.00 0.00 0.00 1.40
3917 4627 8.744568 TTTTTGCCATTTTTATGGGGATATTC 57.255 30.769 6.33 0.00 41.94 1.75
3935 4645 8.082242 GGGATATTCTTTCGGTCAATTTATTGG 58.918 37.037 2.85 0.00 38.30 3.16
3967 4677 1.901833 GGACCACTTTCCATGCCAAAT 59.098 47.619 0.00 0.00 35.49 2.32
3968 4678 3.096092 GGACCACTTTCCATGCCAAATA 58.904 45.455 0.00 0.00 35.49 1.40
4005 4715 6.653526 AACATGTCCATGAATCTTTGTTGA 57.346 33.333 13.93 0.00 41.20 3.18
4008 4718 6.662234 ACATGTCCATGAATCTTTGTTGATCT 59.338 34.615 13.93 0.00 41.20 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.925090 CCTATGTCGACGGCCCCC 61.925 72.222 11.62 0.00 0.00 5.40
10 11 4.603946 GCCTATGTCGACGGCCCC 62.604 72.222 18.93 1.21 37.86 5.80
13 14 2.279517 CAGGCCTATGTCGACGGC 60.280 66.667 20.80 20.80 43.03 5.68
14 15 1.065928 GACAGGCCTATGTCGACGG 59.934 63.158 3.98 7.36 40.18 4.79
15 16 4.711980 GACAGGCCTATGTCGACG 57.288 61.111 3.98 0.00 40.18 5.12
40 41 3.483869 GCCCCTAGCCCTGACTGG 61.484 72.222 0.00 0.00 34.35 4.00
49 50 4.315941 CCCGATTCGGCCCCTAGC 62.316 72.222 19.80 0.00 46.86 3.42
50 51 1.532316 TACCCGATTCGGCCCCTAG 60.532 63.158 19.80 7.37 46.86 3.02
51 52 1.532316 CTACCCGATTCGGCCCCTA 60.532 63.158 19.80 4.99 46.86 3.53
52 53 2.842936 CTACCCGATTCGGCCCCT 60.843 66.667 19.80 4.07 46.86 4.79
53 54 3.159347 ACTACCCGATTCGGCCCC 61.159 66.667 19.80 0.00 46.86 5.80
54 55 1.963464 TTCACTACCCGATTCGGCCC 61.963 60.000 19.80 0.00 46.86 5.80
55 56 0.808847 GTTCACTACCCGATTCGGCC 60.809 60.000 19.80 0.00 46.86 6.13
56 57 0.808847 GGTTCACTACCCGATTCGGC 60.809 60.000 19.80 3.17 46.86 5.54
57 58 5.056227 ATCTGGTTCACTACCCGATTCGG 62.056 52.174 18.33 18.33 45.45 4.30
58 59 2.100916 ATCTGGTTCACTACCCGATTCG 59.899 50.000 0.00 0.00 45.45 3.34
59 60 3.458189 CATCTGGTTCACTACCCGATTC 58.542 50.000 0.00 0.00 45.45 2.52
60 61 2.420129 GCATCTGGTTCACTACCCGATT 60.420 50.000 0.00 0.00 45.45 3.34
66 67 4.737855 TTCCTAGCATCTGGTTCACTAC 57.262 45.455 0.00 0.00 0.00 2.73
67 68 4.530553 TGTTTCCTAGCATCTGGTTCACTA 59.469 41.667 0.00 0.00 0.00 2.74
68 69 3.327757 TGTTTCCTAGCATCTGGTTCACT 59.672 43.478 0.00 0.00 0.00 3.41
69 70 3.674997 TGTTTCCTAGCATCTGGTTCAC 58.325 45.455 0.00 0.00 0.00 3.18
70 71 4.365514 TTGTTTCCTAGCATCTGGTTCA 57.634 40.909 0.00 0.00 0.00 3.18
71 72 5.297029 GGTATTGTTTCCTAGCATCTGGTTC 59.703 44.000 0.00 0.00 0.00 3.62
72 73 5.193679 GGTATTGTTTCCTAGCATCTGGTT 58.806 41.667 0.00 0.00 0.00 3.67
73 74 4.227300 TGGTATTGTTTCCTAGCATCTGGT 59.773 41.667 0.00 0.00 0.00 4.00
74 75 4.780815 TGGTATTGTTTCCTAGCATCTGG 58.219 43.478 0.00 0.00 0.00 3.86
75 76 4.274459 GCTGGTATTGTTTCCTAGCATCTG 59.726 45.833 0.00 0.00 32.43 2.90
76 77 4.164988 AGCTGGTATTGTTTCCTAGCATCT 59.835 41.667 0.00 0.00 33.59 2.90
77 78 4.274459 CAGCTGGTATTGTTTCCTAGCATC 59.726 45.833 5.57 0.00 33.59 3.91
78 79 4.080356 TCAGCTGGTATTGTTTCCTAGCAT 60.080 41.667 15.13 0.00 33.59 3.79
79 80 3.263170 TCAGCTGGTATTGTTTCCTAGCA 59.737 43.478 15.13 0.00 33.59 3.49
80 81 3.873910 TCAGCTGGTATTGTTTCCTAGC 58.126 45.455 15.13 0.00 0.00 3.42
81 82 4.878397 CCTTCAGCTGGTATTGTTTCCTAG 59.122 45.833 15.13 0.00 0.00 3.02
82 83 4.843728 CCTTCAGCTGGTATTGTTTCCTA 58.156 43.478 15.13 0.00 0.00 2.94
83 84 3.690460 CCTTCAGCTGGTATTGTTTCCT 58.310 45.455 15.13 0.00 0.00 3.36
84 85 2.164422 GCCTTCAGCTGGTATTGTTTCC 59.836 50.000 15.13 0.00 38.99 3.13
85 86 3.494045 GCCTTCAGCTGGTATTGTTTC 57.506 47.619 15.13 0.00 38.99 2.78
97 98 1.068264 GGCACAAGTTTAGCCTTCAGC 60.068 52.381 7.87 0.00 44.92 4.26
98 99 2.997485 GGCACAAGTTTAGCCTTCAG 57.003 50.000 7.87 0.00 44.92 3.02
104 105 4.214332 GGCTATATCTGGCACAAGTTTAGC 59.786 45.833 0.00 0.00 38.70 3.09
105 106 4.757149 GGGCTATATCTGGCACAAGTTTAG 59.243 45.833 4.95 0.00 38.70 1.85
106 107 4.165180 TGGGCTATATCTGGCACAAGTTTA 59.835 41.667 0.00 0.00 39.60 2.01
107 108 3.053693 TGGGCTATATCTGGCACAAGTTT 60.054 43.478 0.00 0.00 39.60 2.66
108 109 2.509548 TGGGCTATATCTGGCACAAGTT 59.490 45.455 0.00 0.00 39.60 2.66
109 110 2.105477 CTGGGCTATATCTGGCACAAGT 59.895 50.000 0.00 0.00 42.24 3.16
110 111 2.369860 TCTGGGCTATATCTGGCACAAG 59.630 50.000 0.00 0.00 42.24 3.16
111 112 2.407562 TCTGGGCTATATCTGGCACAA 58.592 47.619 0.00 0.00 42.24 3.33
112 113 2.101640 TCTGGGCTATATCTGGCACA 57.898 50.000 0.00 0.00 40.37 4.57
113 114 3.710209 ATTCTGGGCTATATCTGGCAC 57.290 47.619 4.95 0.00 31.81 5.01
114 115 5.841267 TTTATTCTGGGCTATATCTGGCA 57.159 39.130 4.95 0.00 0.00 4.92
115 116 8.986929 AATATTTATTCTGGGCTATATCTGGC 57.013 34.615 0.00 0.00 0.00 4.85
123 124 9.041354 ACAAAACCAAATATTTATTCTGGGCTA 57.959 29.630 0.00 0.00 0.00 3.93
124 125 7.917003 ACAAAACCAAATATTTATTCTGGGCT 58.083 30.769 0.00 0.00 0.00 5.19
125 126 8.450180 CAACAAAACCAAATATTTATTCTGGGC 58.550 33.333 0.00 0.00 0.00 5.36
126 127 8.450180 GCAACAAAACCAAATATTTATTCTGGG 58.550 33.333 0.00 0.00 0.00 4.45
127 128 8.997323 TGCAACAAAACCAAATATTTATTCTGG 58.003 29.630 0.00 0.88 0.00 3.86
163 164 9.748708 GCATCTATGTTTTAGCATTTCCAATAA 57.251 29.630 0.00 0.00 0.00 1.40
164 165 8.359642 GGCATCTATGTTTTAGCATTTCCAATA 58.640 33.333 0.00 0.00 0.00 1.90
165 166 7.070322 AGGCATCTATGTTTTAGCATTTCCAAT 59.930 33.333 0.00 0.00 0.00 3.16
166 167 6.380846 AGGCATCTATGTTTTAGCATTTCCAA 59.619 34.615 0.00 0.00 0.00 3.53
167 168 5.893255 AGGCATCTATGTTTTAGCATTTCCA 59.107 36.000 0.00 0.00 0.00 3.53
168 169 6.211515 CAGGCATCTATGTTTTAGCATTTCC 58.788 40.000 0.00 0.00 0.00 3.13
169 170 6.039717 TCCAGGCATCTATGTTTTAGCATTTC 59.960 38.462 0.00 0.00 0.00 2.17
170 171 5.893255 TCCAGGCATCTATGTTTTAGCATTT 59.107 36.000 0.00 0.00 0.00 2.32
171 172 5.448654 TCCAGGCATCTATGTTTTAGCATT 58.551 37.500 0.00 0.00 0.00 3.56
172 173 5.052693 TCCAGGCATCTATGTTTTAGCAT 57.947 39.130 0.00 0.00 0.00 3.79
173 174 4.502105 TCCAGGCATCTATGTTTTAGCA 57.498 40.909 0.00 0.00 0.00 3.49
174 175 5.835113 TTTCCAGGCATCTATGTTTTAGC 57.165 39.130 0.00 0.00 0.00 3.09
175 176 9.657419 AAAAATTTCCAGGCATCTATGTTTTAG 57.343 29.630 0.00 0.00 0.00 1.85
178 179 9.435688 GTTAAAAATTTCCAGGCATCTATGTTT 57.564 29.630 0.00 0.00 0.00 2.83
179 180 7.759433 CGTTAAAAATTTCCAGGCATCTATGTT 59.241 33.333 0.00 0.00 0.00 2.71
180 181 7.093945 ACGTTAAAAATTTCCAGGCATCTATGT 60.094 33.333 0.00 0.00 0.00 2.29
181 182 7.257722 ACGTTAAAAATTTCCAGGCATCTATG 58.742 34.615 0.00 0.00 0.00 2.23
182 183 7.122055 TGACGTTAAAAATTTCCAGGCATCTAT 59.878 33.333 0.00 0.00 0.00 1.98
183 184 6.431543 TGACGTTAAAAATTTCCAGGCATCTA 59.568 34.615 0.00 0.00 0.00 1.98
184 185 5.242838 TGACGTTAAAAATTTCCAGGCATCT 59.757 36.000 0.00 0.00 0.00 2.90
185 186 5.344933 GTGACGTTAAAAATTTCCAGGCATC 59.655 40.000 0.00 0.00 0.00 3.91
186 187 5.221342 TGTGACGTTAAAAATTTCCAGGCAT 60.221 36.000 0.00 0.00 0.00 4.40
187 188 4.098044 TGTGACGTTAAAAATTTCCAGGCA 59.902 37.500 0.00 0.00 0.00 4.75
188 189 4.612943 TGTGACGTTAAAAATTTCCAGGC 58.387 39.130 0.00 0.00 0.00 4.85
189 190 6.531948 TGTTTGTGACGTTAAAAATTTCCAGG 59.468 34.615 0.00 0.00 0.00 4.45
190 191 7.274686 AGTGTTTGTGACGTTAAAAATTTCCAG 59.725 33.333 0.00 0.00 0.00 3.86
191 192 7.091443 AGTGTTTGTGACGTTAAAAATTTCCA 58.909 30.769 0.00 0.00 0.00 3.53
192 193 7.514573 AGTGTTTGTGACGTTAAAAATTTCC 57.485 32.000 0.00 0.00 0.00 3.13
193 194 9.800299 AAAAGTGTTTGTGACGTTAAAAATTTC 57.200 25.926 0.00 0.00 0.00 2.17
220 221 6.418226 CGACCGAAACACCAATTAATGAAAAA 59.582 34.615 0.00 0.00 0.00 1.94
221 222 5.915758 CGACCGAAACACCAATTAATGAAAA 59.084 36.000 0.00 0.00 0.00 2.29
222 223 5.453648 CGACCGAAACACCAATTAATGAAA 58.546 37.500 0.00 0.00 0.00 2.69
223 224 4.614078 GCGACCGAAACACCAATTAATGAA 60.614 41.667 0.00 0.00 0.00 2.57
224 225 3.120130 GCGACCGAAACACCAATTAATGA 60.120 43.478 0.00 0.00 0.00 2.57
225 226 3.119990 AGCGACCGAAACACCAATTAATG 60.120 43.478 0.00 0.00 0.00 1.90
226 227 3.078837 AGCGACCGAAACACCAATTAAT 58.921 40.909 0.00 0.00 0.00 1.40
227 228 2.481185 GAGCGACCGAAACACCAATTAA 59.519 45.455 0.00 0.00 0.00 1.40
228 229 2.070783 GAGCGACCGAAACACCAATTA 58.929 47.619 0.00 0.00 0.00 1.40
229 230 0.872388 GAGCGACCGAAACACCAATT 59.128 50.000 0.00 0.00 0.00 2.32
230 231 0.034896 AGAGCGACCGAAACACCAAT 59.965 50.000 0.00 0.00 0.00 3.16
231 232 0.878523 CAGAGCGACCGAAACACCAA 60.879 55.000 0.00 0.00 0.00 3.67
232 233 1.300620 CAGAGCGACCGAAACACCA 60.301 57.895 0.00 0.00 0.00 4.17
233 234 1.300697 ACAGAGCGACCGAAACACC 60.301 57.895 0.00 0.00 0.00 4.16
234 235 0.596600 TCACAGAGCGACCGAAACAC 60.597 55.000 0.00 0.00 0.00 3.32
235 236 0.317160 ATCACAGAGCGACCGAAACA 59.683 50.000 0.00 0.00 0.00 2.83
236 237 0.716108 CATCACAGAGCGACCGAAAC 59.284 55.000 0.00 0.00 0.00 2.78
237 238 0.601057 TCATCACAGAGCGACCGAAA 59.399 50.000 0.00 0.00 0.00 3.46
238 239 0.601057 TTCATCACAGAGCGACCGAA 59.399 50.000 0.00 0.00 0.00 4.30
239 240 0.171231 CTTCATCACAGAGCGACCGA 59.829 55.000 0.00 0.00 0.00 4.69
240 241 0.109086 ACTTCATCACAGAGCGACCG 60.109 55.000 0.00 0.00 0.00 4.79
241 242 2.086054 AACTTCATCACAGAGCGACC 57.914 50.000 0.00 0.00 0.00 4.79
242 243 3.059884 TGAAACTTCATCACAGAGCGAC 58.940 45.455 0.00 0.00 31.01 5.19
243 244 3.385193 TGAAACTTCATCACAGAGCGA 57.615 42.857 0.00 0.00 31.01 4.93
264 265 9.854668 TTTTATTTCCGATTCCATATAAGTGGA 57.145 29.630 0.00 0.00 46.28 4.02
274 275 9.685828 CAAAAGTAACTTTTATTTCCGATTCCA 57.314 29.630 0.00 0.00 41.05 3.53
275 276 8.644619 GCAAAAGTAACTTTTATTTCCGATTCC 58.355 33.333 0.00 0.00 41.05 3.01
276 277 9.187455 TGCAAAAGTAACTTTTATTTCCGATTC 57.813 29.630 0.00 0.00 41.05 2.52
277 278 9.191995 CTGCAAAAGTAACTTTTATTTCCGATT 57.808 29.630 0.00 0.00 41.05 3.34
278 279 8.357402 ACTGCAAAAGTAACTTTTATTTCCGAT 58.643 29.630 0.00 0.00 41.05 4.18
279 280 7.708998 ACTGCAAAAGTAACTTTTATTTCCGA 58.291 30.769 0.00 0.00 41.05 4.55
280 281 7.646130 TGACTGCAAAAGTAACTTTTATTTCCG 59.354 33.333 0.00 0.00 41.05 4.30
281 282 8.752254 GTGACTGCAAAAGTAACTTTTATTTCC 58.248 33.333 0.00 0.00 41.05 3.13
282 283 9.296400 TGTGACTGCAAAAGTAACTTTTATTTC 57.704 29.630 0.00 0.00 41.05 2.17
283 284 9.083080 GTGTGACTGCAAAAGTAACTTTTATTT 57.917 29.630 0.00 0.00 41.05 1.40
284 285 8.466798 AGTGTGACTGCAAAAGTAACTTTTATT 58.533 29.630 0.00 0.00 41.05 1.40
285 286 7.996385 AGTGTGACTGCAAAAGTAACTTTTAT 58.004 30.769 0.00 0.00 41.05 1.40
286 287 7.385778 AGTGTGACTGCAAAAGTAACTTTTA 57.614 32.000 0.00 0.00 41.05 1.52
287 288 6.267496 AGTGTGACTGCAAAAGTAACTTTT 57.733 33.333 0.00 0.00 43.36 2.27
288 289 5.897377 AGTGTGACTGCAAAAGTAACTTT 57.103 34.783 0.00 0.00 40.61 2.66
289 290 5.897377 AAGTGTGACTGCAAAAGTAACTT 57.103 34.783 0.00 0.00 40.61 2.66
290 291 5.897377 AAAGTGTGACTGCAAAAGTAACT 57.103 34.783 0.00 0.00 40.61 2.24
291 292 7.024768 TGTTAAAGTGTGACTGCAAAAGTAAC 58.975 34.615 0.00 0.00 40.07 2.50
292 293 7.119992 TCTGTTAAAGTGTGACTGCAAAAGTAA 59.880 33.333 0.00 0.00 40.07 2.24
293 294 6.596106 TCTGTTAAAGTGTGACTGCAAAAGTA 59.404 34.615 0.00 0.00 40.07 2.24
294 295 5.414454 TCTGTTAAAGTGTGACTGCAAAAGT 59.586 36.000 0.00 0.00 43.85 2.66
295 296 5.879237 TCTGTTAAAGTGTGACTGCAAAAG 58.121 37.500 0.00 0.00 0.00 2.27
296 297 5.888691 TCTGTTAAAGTGTGACTGCAAAA 57.111 34.783 0.00 0.00 0.00 2.44
297 298 6.449635 AATCTGTTAAAGTGTGACTGCAAA 57.550 33.333 0.00 0.00 0.00 3.68
298 299 6.204688 CCTAATCTGTTAAAGTGTGACTGCAA 59.795 38.462 0.00 0.00 0.00 4.08
299 300 5.700832 CCTAATCTGTTAAAGTGTGACTGCA 59.299 40.000 0.00 0.00 0.00 4.41
300 301 5.932303 TCCTAATCTGTTAAAGTGTGACTGC 59.068 40.000 0.00 0.00 0.00 4.40
301 302 6.091441 GCTCCTAATCTGTTAAAGTGTGACTG 59.909 42.308 0.00 0.00 0.00 3.51
302 303 6.166982 GCTCCTAATCTGTTAAAGTGTGACT 58.833 40.000 0.00 0.00 0.00 3.41
303 304 5.351740 GGCTCCTAATCTGTTAAAGTGTGAC 59.648 44.000 0.00 0.00 0.00 3.67
304 305 5.488341 GGCTCCTAATCTGTTAAAGTGTGA 58.512 41.667 0.00 0.00 0.00 3.58
305 306 4.330074 CGGCTCCTAATCTGTTAAAGTGTG 59.670 45.833 0.00 0.00 0.00 3.82
306 307 4.222145 TCGGCTCCTAATCTGTTAAAGTGT 59.778 41.667 0.00 0.00 0.00 3.55
307 308 4.755411 TCGGCTCCTAATCTGTTAAAGTG 58.245 43.478 0.00 0.00 0.00 3.16
308 309 5.416271 TTCGGCTCCTAATCTGTTAAAGT 57.584 39.130 0.00 0.00 0.00 2.66
309 310 5.064834 GGTTTCGGCTCCTAATCTGTTAAAG 59.935 44.000 0.00 0.00 0.00 1.85
310 311 4.939439 GGTTTCGGCTCCTAATCTGTTAAA 59.061 41.667 0.00 0.00 0.00 1.52
311 312 4.510571 GGTTTCGGCTCCTAATCTGTTAA 58.489 43.478 0.00 0.00 0.00 2.01
312 313 3.429822 CGGTTTCGGCTCCTAATCTGTTA 60.430 47.826 0.00 0.00 0.00 2.41
313 314 2.677037 CGGTTTCGGCTCCTAATCTGTT 60.677 50.000 0.00 0.00 0.00 3.16
314 315 1.134788 CGGTTTCGGCTCCTAATCTGT 60.135 52.381 0.00 0.00 0.00 3.41
315 316 1.134788 ACGGTTTCGGCTCCTAATCTG 60.135 52.381 0.00 0.00 41.39 2.90
316 317 1.192428 ACGGTTTCGGCTCCTAATCT 58.808 50.000 0.00 0.00 41.39 2.40
317 318 2.360165 TCTACGGTTTCGGCTCCTAATC 59.640 50.000 0.00 0.00 41.39 1.75
318 319 2.381911 TCTACGGTTTCGGCTCCTAAT 58.618 47.619 0.00 0.00 41.39 1.73
319 320 1.838112 TCTACGGTTTCGGCTCCTAA 58.162 50.000 0.00 0.00 41.39 2.69
320 321 1.838112 TTCTACGGTTTCGGCTCCTA 58.162 50.000 0.00 0.00 41.39 2.94
321 322 1.192428 ATTCTACGGTTTCGGCTCCT 58.808 50.000 0.00 0.00 41.39 3.69
322 323 2.877043 TATTCTACGGTTTCGGCTCC 57.123 50.000 0.00 0.00 41.39 4.70
323 324 4.569564 ACAATTATTCTACGGTTTCGGCTC 59.430 41.667 0.00 0.00 41.39 4.70
324 325 4.510571 ACAATTATTCTACGGTTTCGGCT 58.489 39.130 0.00 0.00 41.39 5.52
325 326 4.870221 ACAATTATTCTACGGTTTCGGC 57.130 40.909 0.00 0.00 41.39 5.54
326 327 6.657836 AGAACAATTATTCTACGGTTTCGG 57.342 37.500 0.00 0.00 37.16 4.30
327 328 8.273557 CCATAGAACAATTATTCTACGGTTTCG 58.726 37.037 9.89 0.00 42.53 3.46
379 380 9.216117 GGTGACACTAGTTGTATTATCTTTTGT 57.784 33.333 5.39 0.00 39.17 2.83
380 381 8.665685 GGGTGACACTAGTTGTATTATCTTTTG 58.334 37.037 5.39 0.00 39.17 2.44
381 382 8.380099 TGGGTGACACTAGTTGTATTATCTTTT 58.620 33.333 5.39 0.00 39.17 2.27
382 383 7.913789 TGGGTGACACTAGTTGTATTATCTTT 58.086 34.615 5.39 0.00 39.17 2.52
383 384 7.490657 TGGGTGACACTAGTTGTATTATCTT 57.509 36.000 5.39 0.00 39.17 2.40
384 385 7.490657 TTGGGTGACACTAGTTGTATTATCT 57.509 36.000 5.39 0.00 39.17 1.98
385 386 9.257651 GTATTGGGTGACACTAGTTGTATTATC 57.742 37.037 5.39 0.00 39.17 1.75
386 387 8.208903 GGTATTGGGTGACACTAGTTGTATTAT 58.791 37.037 5.39 0.00 39.17 1.28
387 388 7.180587 TGGTATTGGGTGACACTAGTTGTATTA 59.819 37.037 5.39 0.00 39.17 0.98
388 389 6.013206 TGGTATTGGGTGACACTAGTTGTATT 60.013 38.462 5.39 0.00 39.17 1.89
389 390 5.486063 TGGTATTGGGTGACACTAGTTGTAT 59.514 40.000 5.39 0.00 39.17 2.29
390 391 4.839550 TGGTATTGGGTGACACTAGTTGTA 59.160 41.667 5.39 0.00 39.17 2.41
391 392 3.649023 TGGTATTGGGTGACACTAGTTGT 59.351 43.478 5.39 0.00 43.10 3.32
392 393 4.253685 CTGGTATTGGGTGACACTAGTTG 58.746 47.826 5.39 0.00 0.00 3.16
393 394 3.908103 ACTGGTATTGGGTGACACTAGTT 59.092 43.478 5.39 0.00 29.57 2.24
394 395 3.517612 ACTGGTATTGGGTGACACTAGT 58.482 45.455 5.39 0.00 0.00 2.57
395 396 4.223032 AGAACTGGTATTGGGTGACACTAG 59.777 45.833 5.39 0.00 0.00 2.57
396 397 4.164981 AGAACTGGTATTGGGTGACACTA 58.835 43.478 5.39 0.00 0.00 2.74
397 398 2.979678 AGAACTGGTATTGGGTGACACT 59.020 45.455 5.39 0.00 0.00 3.55
398 399 3.418684 AGAACTGGTATTGGGTGACAC 57.581 47.619 0.00 0.00 0.00 3.67
399 400 3.517901 CCTAGAACTGGTATTGGGTGACA 59.482 47.826 0.00 0.00 0.00 3.58
400 401 3.773119 TCCTAGAACTGGTATTGGGTGAC 59.227 47.826 0.00 0.00 0.00 3.67
401 402 4.069312 TCCTAGAACTGGTATTGGGTGA 57.931 45.455 0.00 0.00 0.00 4.02
402 403 4.837093 TTCCTAGAACTGGTATTGGGTG 57.163 45.455 0.00 0.00 0.00 4.61
403 404 4.600111 TGTTTCCTAGAACTGGTATTGGGT 59.400 41.667 0.00 0.00 0.00 4.51
404 405 5.174037 TGTTTCCTAGAACTGGTATTGGG 57.826 43.478 0.00 0.00 0.00 4.12
405 406 8.801882 TTAATGTTTCCTAGAACTGGTATTGG 57.198 34.615 0.00 0.00 0.00 3.16
409 410 9.856162 AACTTTTAATGTTTCCTAGAACTGGTA 57.144 29.630 0.00 0.00 0.00 3.25
410 411 8.762481 AACTTTTAATGTTTCCTAGAACTGGT 57.238 30.769 0.00 0.00 0.00 4.00
415 416 9.308318 GCACAAAACTTTTAATGTTTCCTAGAA 57.692 29.630 8.95 0.00 36.72 2.10
416 417 8.691797 AGCACAAAACTTTTAATGTTTCCTAGA 58.308 29.630 8.95 0.00 36.72 2.43
417 418 8.871686 AGCACAAAACTTTTAATGTTTCCTAG 57.128 30.769 8.95 4.08 36.72 3.02
419 420 9.476202 GATAGCACAAAACTTTTAATGTTTCCT 57.524 29.630 8.95 6.72 36.72 3.36
420 421 8.708742 GGATAGCACAAAACTTTTAATGTTTCC 58.291 33.333 8.95 1.66 36.72 3.13
421 422 9.255304 TGGATAGCACAAAACTTTTAATGTTTC 57.745 29.630 8.95 0.00 36.72 2.78
422 423 9.606631 TTGGATAGCACAAAACTTTTAATGTTT 57.393 25.926 3.57 3.57 39.03 2.83
423 424 9.606631 TTTGGATAGCACAAAACTTTTAATGTT 57.393 25.926 0.00 0.00 35.11 2.71
424 425 9.777297 ATTTGGATAGCACAAAACTTTTAATGT 57.223 25.926 0.00 0.00 40.74 2.71
427 428 9.606631 ACAATTTGGATAGCACAAAACTTTTAA 57.393 25.926 0.78 0.00 40.74 1.52
428 429 9.039870 CACAATTTGGATAGCACAAAACTTTTA 57.960 29.630 0.78 0.00 40.74 1.52
429 430 7.768120 TCACAATTTGGATAGCACAAAACTTTT 59.232 29.630 0.78 0.00 40.74 2.27
430 431 7.271511 TCACAATTTGGATAGCACAAAACTTT 58.728 30.769 0.78 0.00 40.74 2.66
431 432 6.815089 TCACAATTTGGATAGCACAAAACTT 58.185 32.000 0.78 0.00 40.74 2.66
432 433 6.403866 TCACAATTTGGATAGCACAAAACT 57.596 33.333 0.78 0.00 40.74 2.66
433 434 7.092716 AGATCACAATTTGGATAGCACAAAAC 58.907 34.615 0.78 0.00 40.74 2.43
434 435 7.230849 AGATCACAATTTGGATAGCACAAAA 57.769 32.000 0.78 0.00 40.74 2.44
435 436 6.839124 AGATCACAATTTGGATAGCACAAA 57.161 33.333 0.78 0.00 41.50 2.83
436 437 7.936496 TTAGATCACAATTTGGATAGCACAA 57.064 32.000 0.78 0.00 0.00 3.33
437 438 7.392953 TGTTTAGATCACAATTTGGATAGCACA 59.607 33.333 0.78 1.40 0.00 4.57
438 439 7.698130 GTGTTTAGATCACAATTTGGATAGCAC 59.302 37.037 0.78 2.33 36.05 4.40
439 440 7.611467 AGTGTTTAGATCACAATTTGGATAGCA 59.389 33.333 0.78 0.00 38.16 3.49
440 441 7.989826 AGTGTTTAGATCACAATTTGGATAGC 58.010 34.615 0.78 0.00 38.16 2.97
441 442 8.331022 CGAGTGTTTAGATCACAATTTGGATAG 58.669 37.037 0.78 0.00 38.16 2.08
442 443 7.201609 GCGAGTGTTTAGATCACAATTTGGATA 60.202 37.037 0.78 0.00 38.16 2.59
443 444 6.403636 GCGAGTGTTTAGATCACAATTTGGAT 60.404 38.462 0.78 1.19 38.16 3.41
444 445 5.106712 GCGAGTGTTTAGATCACAATTTGGA 60.107 40.000 0.78 0.00 38.16 3.53
445 446 5.088739 GCGAGTGTTTAGATCACAATTTGG 58.911 41.667 0.78 0.00 38.16 3.28
446 447 5.088739 GGCGAGTGTTTAGATCACAATTTG 58.911 41.667 0.00 0.00 38.16 2.32
447 448 4.156008 GGGCGAGTGTTTAGATCACAATTT 59.844 41.667 0.00 0.00 38.16 1.82
448 449 3.689649 GGGCGAGTGTTTAGATCACAATT 59.310 43.478 0.00 0.00 38.16 2.32
449 450 3.270877 GGGCGAGTGTTTAGATCACAAT 58.729 45.455 0.00 0.00 38.16 2.71
450 451 2.037902 TGGGCGAGTGTTTAGATCACAA 59.962 45.455 0.00 0.00 38.16 3.33
451 452 1.621317 TGGGCGAGTGTTTAGATCACA 59.379 47.619 0.00 0.00 38.16 3.58
452 453 2.380084 TGGGCGAGTGTTTAGATCAC 57.620 50.000 0.00 0.00 36.22 3.06
453 454 2.158957 GGATGGGCGAGTGTTTAGATCA 60.159 50.000 0.00 0.00 0.00 2.92
454 455 2.103263 AGGATGGGCGAGTGTTTAGATC 59.897 50.000 0.00 0.00 0.00 2.75
455 456 2.119495 AGGATGGGCGAGTGTTTAGAT 58.881 47.619 0.00 0.00 0.00 1.98
456 457 1.568504 AGGATGGGCGAGTGTTTAGA 58.431 50.000 0.00 0.00 0.00 2.10
457 458 3.753294 ATAGGATGGGCGAGTGTTTAG 57.247 47.619 0.00 0.00 0.00 1.85
458 459 4.476297 TCTATAGGATGGGCGAGTGTTTA 58.524 43.478 0.00 0.00 0.00 2.01
459 460 3.305720 TCTATAGGATGGGCGAGTGTTT 58.694 45.455 0.00 0.00 0.00 2.83
460 461 2.894126 CTCTATAGGATGGGCGAGTGTT 59.106 50.000 0.00 0.00 0.00 3.32
461 462 2.158445 ACTCTATAGGATGGGCGAGTGT 60.158 50.000 0.00 0.00 31.19 3.55
462 463 2.520069 ACTCTATAGGATGGGCGAGTG 58.480 52.381 0.00 0.00 31.19 3.51
463 464 2.982339 ACTCTATAGGATGGGCGAGT 57.018 50.000 0.00 0.00 0.00 4.18
464 465 3.129638 GCTTACTCTATAGGATGGGCGAG 59.870 52.174 0.00 0.00 0.00 5.03
465 466 3.090037 GCTTACTCTATAGGATGGGCGA 58.910 50.000 0.00 0.00 0.00 5.54
466 467 3.093057 AGCTTACTCTATAGGATGGGCG 58.907 50.000 0.00 0.00 0.00 6.13
467 468 5.012148 TGAAAGCTTACTCTATAGGATGGGC 59.988 44.000 0.00 0.44 0.00 5.36
468 469 6.672266 TGAAAGCTTACTCTATAGGATGGG 57.328 41.667 0.00 0.00 0.00 4.00
469 470 8.964476 TTTTGAAAGCTTACTCTATAGGATGG 57.036 34.615 0.00 0.00 0.00 3.51
471 472 9.959721 TGTTTTTGAAAGCTTACTCTATAGGAT 57.040 29.630 0.00 0.00 0.00 3.24
472 473 9.959721 ATGTTTTTGAAAGCTTACTCTATAGGA 57.040 29.630 0.00 0.00 0.00 2.94
476 477 8.784043 ACGAATGTTTTTGAAAGCTTACTCTAT 58.216 29.630 0.00 0.00 0.00 1.98
477 478 8.149973 ACGAATGTTTTTGAAAGCTTACTCTA 57.850 30.769 0.00 0.00 0.00 2.43
478 479 7.027778 ACGAATGTTTTTGAAAGCTTACTCT 57.972 32.000 0.00 0.00 0.00 3.24
479 480 8.776680 TTACGAATGTTTTTGAAAGCTTACTC 57.223 30.769 0.00 0.00 0.00 2.59
480 481 9.575783 TTTTACGAATGTTTTTGAAAGCTTACT 57.424 25.926 0.00 0.00 0.00 2.24
506 507 9.139174 GCACAATTGCTACATACAAAAGTTTAT 57.861 29.630 5.05 0.00 46.17 1.40
507 508 8.514136 GCACAATTGCTACATACAAAAGTTTA 57.486 30.769 5.05 0.00 46.17 2.01
574 604 3.553828 TGGAACCGAGTTGTTTCTCTT 57.446 42.857 0.00 0.00 32.83 2.85
600 630 2.593436 ACACTTTTGCCGACCGGG 60.593 61.111 6.32 0.00 39.58 5.73
601 631 2.637025 CACACTTTTGCCGACCGG 59.363 61.111 0.00 0.00 38.57 5.28
602 632 2.637025 CCACACTTTTGCCGACCG 59.363 61.111 0.00 0.00 0.00 4.79
605 635 0.817634 CTCACCCACACTTTTGCCGA 60.818 55.000 0.00 0.00 0.00 5.54
606 636 1.654220 CTCACCCACACTTTTGCCG 59.346 57.895 0.00 0.00 0.00 5.69
608 638 1.338020 CTTCCTCACCCACACTTTTGC 59.662 52.381 0.00 0.00 0.00 3.68
609 639 2.930950 TCTTCCTCACCCACACTTTTG 58.069 47.619 0.00 0.00 0.00 2.44
610 640 3.884037 ATCTTCCTCACCCACACTTTT 57.116 42.857 0.00 0.00 0.00 2.27
612 642 2.040412 GGAATCTTCCTCACCCACACTT 59.960 50.000 1.57 0.00 44.11 3.16
613 643 1.630878 GGAATCTTCCTCACCCACACT 59.369 52.381 1.57 0.00 44.11 3.55
614 644 2.115343 GGAATCTTCCTCACCCACAC 57.885 55.000 1.57 0.00 44.11 3.82
625 793 3.841643 CAAGTGCCAATGTGGAATCTTC 58.158 45.455 0.00 0.00 40.96 2.87
637 805 3.121934 CTGCTGTGCAAGTGCCAA 58.878 55.556 0.00 0.00 38.41 4.52
653 821 5.945784 TGCATGAAAAATCTAGGTTGTAGCT 59.054 36.000 0.00 0.00 0.00 3.32
654 822 6.194796 TGCATGAAAAATCTAGGTTGTAGC 57.805 37.500 0.00 0.00 0.00 3.58
655 823 6.694411 GCATGCATGAAAAATCTAGGTTGTAG 59.306 38.462 30.64 0.00 0.00 2.74
656 824 6.377996 AGCATGCATGAAAAATCTAGGTTGTA 59.622 34.615 30.64 0.00 0.00 2.41
657 825 5.186409 AGCATGCATGAAAAATCTAGGTTGT 59.814 36.000 30.64 0.00 0.00 3.32
658 826 5.657474 AGCATGCATGAAAAATCTAGGTTG 58.343 37.500 30.64 0.00 0.00 3.77
659 827 5.927281 AGCATGCATGAAAAATCTAGGTT 57.073 34.783 30.64 0.00 0.00 3.50
660 828 6.359804 TCTAGCATGCATGAAAAATCTAGGT 58.640 36.000 30.64 7.06 0.00 3.08
690 867 3.643320 TCATGTGATATCTCCGCCTCTTT 59.357 43.478 3.98 0.00 0.00 2.52
718 919 2.532715 ACCACCCCCACTGCTCAT 60.533 61.111 0.00 0.00 0.00 2.90
748 964 3.136077 ACCGTATCTAGTAGGAGCACTCA 59.864 47.826 0.00 0.00 0.00 3.41
756 972 1.335810 TGCGCAACCGTATCTAGTAGG 59.664 52.381 8.16 0.00 36.67 3.18
905 1140 3.177194 AAGCGGCAGGTGCAGTACA 62.177 57.895 1.45 0.00 44.36 2.90
906 1141 2.358737 AAGCGGCAGGTGCAGTAC 60.359 61.111 1.45 0.00 44.36 2.73
907 1142 2.047274 GAAGCGGCAGGTGCAGTA 60.047 61.111 1.45 0.00 44.36 2.74
908 1143 3.946201 AGAAGCGGCAGGTGCAGT 61.946 61.111 1.45 0.00 44.36 4.40
909 1144 3.429141 CAGAAGCGGCAGGTGCAG 61.429 66.667 1.45 0.40 44.36 4.41
936 1173 3.114647 TTCCGTGGTTGTTGCGCAC 62.115 57.895 11.12 6.28 0.00 5.34
937 1174 2.824489 TTCCGTGGTTGTTGCGCA 60.824 55.556 5.66 5.66 0.00 6.09
938 1175 2.353030 GTTCCGTGGTTGTTGCGC 60.353 61.111 0.00 0.00 0.00 6.09
940 1177 1.826487 AGGGTTCCGTGGTTGTTGC 60.826 57.895 0.00 0.00 0.00 4.17
987 1225 1.229428 CGTGTGCTTATATGGCCCAG 58.771 55.000 0.00 0.00 0.00 4.45
991 1229 1.841663 CGGGCGTGTGCTTATATGGC 61.842 60.000 0.00 0.00 42.25 4.40
1054 1296 1.043816 CAGACACACTGGACCAGACT 58.956 55.000 28.56 14.42 42.39 3.24
1071 1319 1.206849 GAGGAAGGGAGAAGCTCACAG 59.793 57.143 0.00 0.00 36.16 3.66
1097 1349 2.324477 GCACACTGCACACACGAC 59.676 61.111 0.00 0.00 44.26 4.34
1355 1668 2.366916 GCAGAGCAGGGACTACATACAT 59.633 50.000 0.00 0.00 36.02 2.29
1356 1669 1.757118 GCAGAGCAGGGACTACATACA 59.243 52.381 0.00 0.00 36.02 2.29
1357 1670 2.035321 GAGCAGAGCAGGGACTACATAC 59.965 54.545 0.00 0.00 36.02 2.39
1358 1671 2.311463 GAGCAGAGCAGGGACTACATA 58.689 52.381 0.00 0.00 36.02 2.29
1753 2177 1.751351 TCCAAGCCTGATCGACTACTG 59.249 52.381 0.00 0.00 0.00 2.74
1755 2179 1.534175 CGTCCAAGCCTGATCGACTAC 60.534 57.143 0.00 0.00 0.00 2.73
1769 2193 3.102052 ACGAAAGCTAAAGTCGTCCAA 57.898 42.857 8.38 0.00 44.21 3.53
1772 2196 3.734735 ACTGAACGAAAGCTAAAGTCGTC 59.265 43.478 13.05 8.76 46.62 4.20
1774 2198 4.660907 CGAACTGAACGAAAGCTAAAGTCG 60.661 45.833 7.30 7.30 40.56 4.18
1779 2203 4.445385 GGTAACGAACTGAACGAAAGCTAA 59.555 41.667 0.00 0.00 34.70 3.09
1781 2205 2.798847 GGTAACGAACTGAACGAAAGCT 59.201 45.455 0.00 0.00 34.70 3.74
1857 2281 0.873743 GGCGCGAAGAGGATCAGAAG 60.874 60.000 12.10 0.00 37.82 2.85
1859 2283 2.786495 GGGCGCGAAGAGGATCAGA 61.786 63.158 12.10 0.00 37.82 3.27
2009 2461 6.172630 TGTGGTCGATGTTAGTACTGTAGTA 58.827 40.000 5.39 0.00 0.00 1.82
2010 2462 5.005740 TGTGGTCGATGTTAGTACTGTAGT 58.994 41.667 5.39 0.22 0.00 2.73
2011 2463 5.556355 TGTGGTCGATGTTAGTACTGTAG 57.444 43.478 5.39 0.00 0.00 2.74
2029 2481 3.732774 CGAATGGCTTTGATGTGATGTGG 60.733 47.826 0.00 0.00 0.00 4.17
2041 2493 1.531149 CGTGTTCACTCGAATGGCTTT 59.469 47.619 0.00 0.00 35.14 3.51
2077 2553 3.827876 TCCAATCAAAGCAGATGAAAGCA 59.172 39.130 0.00 0.00 0.00 3.91
2084 2560 4.581309 TTCTCCTCCAATCAAAGCAGAT 57.419 40.909 0.00 0.00 0.00 2.90
2211 2716 0.396435 CCACGCCATGCCTATCCTTA 59.604 55.000 0.00 0.00 0.00 2.69
2228 2733 9.634163 GAACATATCAATATCATACACGTACCA 57.366 33.333 0.00 0.00 0.00 3.25
2284 2813 2.093658 GGTCTTCTTGTAGATCCGGCAA 60.094 50.000 0.00 0.00 0.00 4.52
2887 3432 3.941483 CCTAAGATTGTTTCATGTCGCCT 59.059 43.478 0.00 0.00 0.00 5.52
2924 3469 6.149474 GCATGTAGTACAAGATTGTTTCAGGT 59.851 38.462 7.16 0.00 42.35 4.00
2926 3471 7.369803 AGCATGTAGTACAAGATTGTTTCAG 57.630 36.000 7.16 0.00 42.35 3.02
3040 3588 6.642707 AAATGAATACACGGGAGACAAAAA 57.357 33.333 0.00 0.00 0.00 1.94
3041 3589 6.642707 AAAATGAATACACGGGAGACAAAA 57.357 33.333 0.00 0.00 0.00 2.44
3089 3639 4.982241 TCTCCTTCAATGAGAGGTTGTT 57.018 40.909 9.96 0.00 34.03 2.83
3122 3672 5.183140 ACCAAACAAAAATCGATACAGAGGG 59.817 40.000 0.00 0.00 0.00 4.30
3126 3676 7.922505 TTGAACCAAACAAAAATCGATACAG 57.077 32.000 0.00 0.00 0.00 2.74
3160 3710 5.078411 AGCTGTTTACACACTCCATAGAG 57.922 43.478 0.00 0.00 46.36 2.43
3162 3712 5.687730 CGATAGCTGTTTACACACTCCATAG 59.312 44.000 0.00 0.00 0.00 2.23
3202 3905 5.747951 ATTTCTCGCAAAAATTGGCAAAA 57.252 30.435 3.01 0.00 0.00 2.44
3205 3908 5.747951 AAAATTTCTCGCAAAAATTGGCA 57.252 30.435 0.00 0.00 36.65 4.92
3250 3953 7.925703 ATTTCTGGTATTCGTTGTACTATCG 57.074 36.000 0.00 0.00 0.00 2.92
3283 3986 1.955080 GGTCTACGGATCTGGGTGTAG 59.045 57.143 6.47 5.16 36.49 2.74
3288 3991 0.397254 AGGTGGTCTACGGATCTGGG 60.397 60.000 6.47 0.00 0.00 4.45
3395 4098 0.597072 GACGACTTCCCGACTGTCTT 59.403 55.000 6.21 0.00 0.00 3.01
3432 4135 1.893808 CTGTTCTGGTGCGCTGGTT 60.894 57.895 9.73 0.00 0.00 3.67
3462 4165 5.661056 TCTGGTCTACGTCATTCTTCATT 57.339 39.130 0.00 0.00 0.00 2.57
3472 4175 4.082136 AGTTGAATCCTTCTGGTCTACGTC 60.082 45.833 0.00 0.00 34.23 4.34
3480 4183 3.929610 GTCTTCGAGTTGAATCCTTCTGG 59.070 47.826 0.00 0.00 35.63 3.86
3504 4207 3.423206 GTCGTTGTTCGTCTATGTTCGTT 59.577 43.478 0.00 0.00 40.80 3.85
3557 4260 2.649034 GAGGTGTGTCTTCGGCGA 59.351 61.111 4.99 4.99 0.00 5.54
3665 4368 1.762370 TGTGTTCTGCTCAGGAAGACA 59.238 47.619 0.00 0.00 42.08 3.41
3680 4383 6.532988 TTAAGTTTTGCTAGGGTTTGTGTT 57.467 33.333 0.00 0.00 0.00 3.32
3708 4414 2.551504 GGGAGGCCTTCGTTTTTAGTCA 60.552 50.000 6.77 0.00 0.00 3.41
3825 4533 2.840651 TCCTCCTCCTCCACAAAAGATC 59.159 50.000 0.00 0.00 0.00 2.75
3826 4534 2.843113 CTCCTCCTCCTCCACAAAAGAT 59.157 50.000 0.00 0.00 0.00 2.40
3828 4537 1.280421 CCTCCTCCTCCTCCACAAAAG 59.720 57.143 0.00 0.00 0.00 2.27
3862 4572 3.451178 AGATTGGGCACAGACGTTACTAT 59.549 43.478 0.00 0.00 0.00 2.12
3863 4573 2.829720 AGATTGGGCACAGACGTTACTA 59.170 45.455 0.00 0.00 0.00 1.82
3864 4574 1.623811 AGATTGGGCACAGACGTTACT 59.376 47.619 0.00 0.00 0.00 2.24
3865 4575 2.094762 AGATTGGGCACAGACGTTAC 57.905 50.000 0.00 0.00 0.00 2.50
3866 4576 2.851263 AAGATTGGGCACAGACGTTA 57.149 45.000 0.00 0.00 0.00 3.18
3867 4577 1.981256 AAAGATTGGGCACAGACGTT 58.019 45.000 0.00 0.00 0.00 3.99
3868 4578 2.851263 TAAAGATTGGGCACAGACGT 57.149 45.000 0.00 0.00 0.00 4.34
3869 4579 4.701956 AAATAAAGATTGGGCACAGACG 57.298 40.909 0.00 0.00 0.00 4.18
3894 4604 7.688918 AGAATATCCCCATAAAAATGGCAAA 57.311 32.000 0.00 0.00 40.35 3.68
3897 4607 6.868339 CGAAAGAATATCCCCATAAAAATGGC 59.132 38.462 0.00 0.00 40.35 4.40
3907 4617 4.788925 ATTGACCGAAAGAATATCCCCA 57.211 40.909 0.00 0.00 0.00 4.96
3916 4626 4.082463 GCCACCAATAAATTGACCGAAAGA 60.082 41.667 4.25 0.00 40.14 2.52
3917 4627 4.173256 GCCACCAATAAATTGACCGAAAG 58.827 43.478 4.25 0.00 40.14 2.62
3935 4645 2.046700 TGGTCCGGAATTCGCCAC 60.047 61.111 5.23 0.00 37.59 5.01
3967 4677 6.315714 TGGACATGTTTAACCATTCCCTTTA 58.684 36.000 0.00 0.00 0.00 1.85
3968 4678 5.151454 TGGACATGTTTAACCATTCCCTTT 58.849 37.500 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.