Multiple sequence alignment - TraesCS2B01G119000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G119000 chr2B 100.000 3690 0 0 1 3690 85072980 85076669 0.000000e+00 6815
1 TraesCS2B01G119000 chr2B 85.611 1793 130 62 976 2694 85177977 85176239 0.000000e+00 1764
2 TraesCS2B01G119000 chr2B 84.438 347 35 13 598 928 85178313 85177970 1.280000e-84 324
3 TraesCS2B01G119000 chr2B 92.169 166 13 0 365 530 619000816 619000981 6.160000e-58 235
4 TraesCS2B01G119000 chr2D 90.045 2019 101 56 796 2784 54317309 54319257 0.000000e+00 2523
5 TraesCS2B01G119000 chr2D 89.575 1247 70 33 625 1851 54488372 54487166 0.000000e+00 1528
6 TraesCS2B01G119000 chr2D 82.897 725 58 30 2004 2694 54487016 54486324 3.170000e-165 592
7 TraesCS2B01G119000 chr2D 89.080 174 19 0 354 527 305895963 305895790 2.230000e-52 217
8 TraesCS2B01G119000 chr2A 91.628 1732 75 36 1002 2721 54882345 54884018 0.000000e+00 2331
9 TraesCS2B01G119000 chr2A 83.685 2133 177 83 625 2694 54955869 54953845 0.000000e+00 1853
10 TraesCS2B01G119000 chr2A 88.043 92 8 2 213 304 54956144 54956056 5.040000e-19 106
11 TraesCS2B01G119000 chr5B 99.012 911 8 1 2780 3690 457062882 457063791 0.000000e+00 1631
12 TraesCS2B01G119000 chr5B 98.677 907 12 0 2784 3690 375736674 375735768 0.000000e+00 1609
13 TraesCS2B01G119000 chr5B 78.125 480 87 13 1052 1522 267779271 267778801 4.660000e-74 289
14 TraesCS2B01G119000 chr4B 98.346 907 14 1 2784 3690 500271823 500270918 0.000000e+00 1591
15 TraesCS2B01G119000 chr4B 85.231 325 39 7 1268 1589 380653769 380654087 3.550000e-85 326
16 TraesCS2B01G119000 chr4B 89.655 145 15 0 1039 1183 380653478 380653622 6.290000e-43 185
17 TraesCS2B01G119000 chr7B 98.126 907 17 0 2784 3690 484530495 484531401 0.000000e+00 1581
18 TraesCS2B01G119000 chr7B 96.803 907 29 0 2784 3690 191707464 191708370 0.000000e+00 1515
19 TraesCS2B01G119000 chr1A 98.126 907 17 0 2784 3690 469842794 469843700 0.000000e+00 1581
20 TraesCS2B01G119000 chr6A 96.692 907 30 0 2784 3690 101838200 101839106 0.000000e+00 1509
21 TraesCS2B01G119000 chr5A 96.692 907 30 0 2784 3690 673525532 673524626 0.000000e+00 1509
22 TraesCS2B01G119000 chr5A 79.508 488 75 17 1052 1524 317248159 317247682 1.280000e-84 324
23 TraesCS2B01G119000 chr4A 96.692 907 30 0 2784 3690 536195512 536196418 0.000000e+00 1509
24 TraesCS2B01G119000 chr4A 89.655 145 15 0 1039 1183 174157472 174157328 6.290000e-43 185
25 TraesCS2B01G119000 chr5D 78.614 505 76 23 1040 1526 238066212 238066702 4.630000e-79 305
26 TraesCS2B01G119000 chr5D 92.771 166 12 0 365 530 220710671 220710506 1.320000e-59 241
27 TraesCS2B01G119000 chr5D 89.205 176 18 1 352 527 62805393 62805219 6.200000e-53 219
28 TraesCS2B01G119000 chr3A 78.189 486 77 27 1040 1521 650056199 650056659 2.170000e-72 283
29 TraesCS2B01G119000 chr3A 90.173 173 16 1 370 542 648037013 648037184 1.330000e-54 224
30 TraesCS2B01G119000 chr6B 91.124 169 15 0 365 533 55649706 55649874 2.870000e-56 230
31 TraesCS2B01G119000 chr6B 90.909 165 14 1 371 534 690750950 690750786 1.730000e-53 220
32 TraesCS2B01G119000 chrUn 91.463 164 14 0 364 527 129563469 129563632 3.710000e-55 226
33 TraesCS2B01G119000 chr1D 89.595 173 17 1 355 527 307699124 307699295 6.200000e-53 219
34 TraesCS2B01G119000 chr4D 89.655 145 15 0 1039 1183 304690191 304690335 6.290000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G119000 chr2B 85072980 85076669 3689 False 6815.0 6815 100.0000 1 3690 1 chr2B.!!$F1 3689
1 TraesCS2B01G119000 chr2B 85176239 85178313 2074 True 1044.0 1764 85.0245 598 2694 2 chr2B.!!$R1 2096
2 TraesCS2B01G119000 chr2D 54317309 54319257 1948 False 2523.0 2523 90.0450 796 2784 1 chr2D.!!$F1 1988
3 TraesCS2B01G119000 chr2D 54486324 54488372 2048 True 1060.0 1528 86.2360 625 2694 2 chr2D.!!$R2 2069
4 TraesCS2B01G119000 chr2A 54882345 54884018 1673 False 2331.0 2331 91.6280 1002 2721 1 chr2A.!!$F1 1719
5 TraesCS2B01G119000 chr2A 54953845 54956144 2299 True 979.5 1853 85.8640 213 2694 2 chr2A.!!$R1 2481
6 TraesCS2B01G119000 chr5B 457062882 457063791 909 False 1631.0 1631 99.0120 2780 3690 1 chr5B.!!$F1 910
7 TraesCS2B01G119000 chr5B 375735768 375736674 906 True 1609.0 1609 98.6770 2784 3690 1 chr5B.!!$R2 906
8 TraesCS2B01G119000 chr4B 500270918 500271823 905 True 1591.0 1591 98.3460 2784 3690 1 chr4B.!!$R1 906
9 TraesCS2B01G119000 chr4B 380653478 380654087 609 False 255.5 326 87.4430 1039 1589 2 chr4B.!!$F1 550
10 TraesCS2B01G119000 chr7B 484530495 484531401 906 False 1581.0 1581 98.1260 2784 3690 1 chr7B.!!$F2 906
11 TraesCS2B01G119000 chr7B 191707464 191708370 906 False 1515.0 1515 96.8030 2784 3690 1 chr7B.!!$F1 906
12 TraesCS2B01G119000 chr1A 469842794 469843700 906 False 1581.0 1581 98.1260 2784 3690 1 chr1A.!!$F1 906
13 TraesCS2B01G119000 chr6A 101838200 101839106 906 False 1509.0 1509 96.6920 2784 3690 1 chr6A.!!$F1 906
14 TraesCS2B01G119000 chr5A 673524626 673525532 906 True 1509.0 1509 96.6920 2784 3690 1 chr5A.!!$R2 906
15 TraesCS2B01G119000 chr4A 536195512 536196418 906 False 1509.0 1509 96.6920 2784 3690 1 chr4A.!!$F1 906

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.036010 AGATTCCACTCCGGCACTTG 60.036 55.0 0.0 0.0 33.14 3.16 F
928 989 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.0 0.0 0.0 0.00 3.82 F
2006 2258 0.830648 GTGGGTAGCTAGTGGCATGA 59.169 55.0 0.0 0.0 44.79 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2010 2262 0.399454 ATGGCTGCCACTAGCTATGG 59.601 55.000 25.99 14.45 42.36 2.74 R
2200 2485 1.153429 GGCCATGTGGTCGTAGTCC 60.153 63.158 0.00 0.00 37.57 3.85 R
3096 3415 0.251608 CCCGGGGAGTGTCCATTTTT 60.252 55.000 14.71 0.00 38.64 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.579335 AAGCCTCTAACGACAAGAGAC 57.421 47.619 12.77 4.07 42.63 3.36
21 22 2.515854 AGCCTCTAACGACAAGAGACA 58.484 47.619 12.77 0.00 42.63 3.41
22 23 2.229302 AGCCTCTAACGACAAGAGACAC 59.771 50.000 12.77 4.84 42.63 3.67
23 24 2.030185 GCCTCTAACGACAAGAGACACA 60.030 50.000 12.77 0.00 42.63 3.72
24 25 3.552273 GCCTCTAACGACAAGAGACACAA 60.552 47.826 12.77 0.00 42.63 3.33
25 26 3.982058 CCTCTAACGACAAGAGACACAAC 59.018 47.826 12.77 0.00 42.63 3.32
26 27 4.261656 CCTCTAACGACAAGAGACACAACT 60.262 45.833 12.77 0.00 42.63 3.16
27 28 4.856664 TCTAACGACAAGAGACACAACTC 58.143 43.478 0.00 0.00 37.19 3.01
28 29 2.121116 ACGACAAGAGACACAACTCG 57.879 50.000 0.00 0.00 41.25 4.18
29 30 1.269102 ACGACAAGAGACACAACTCGG 60.269 52.381 0.00 0.00 41.25 4.63
30 31 1.269102 CGACAAGAGACACAACTCGGT 60.269 52.381 0.00 0.00 41.25 4.69
31 32 2.798499 CGACAAGAGACACAACTCGGTT 60.798 50.000 0.00 0.00 41.25 4.44
32 33 2.795470 GACAAGAGACACAACTCGGTTC 59.205 50.000 0.00 0.00 41.25 3.62
33 34 2.167693 ACAAGAGACACAACTCGGTTCA 59.832 45.455 0.00 0.00 41.25 3.18
34 35 3.194861 CAAGAGACACAACTCGGTTCAA 58.805 45.455 0.00 0.00 41.25 2.69
35 36 3.099267 AGAGACACAACTCGGTTCAAG 57.901 47.619 0.00 0.00 41.25 3.02
36 37 2.693591 AGAGACACAACTCGGTTCAAGA 59.306 45.455 0.00 0.00 41.25 3.02
37 38 3.132289 AGAGACACAACTCGGTTCAAGAA 59.868 43.478 0.00 0.00 41.25 2.52
38 39 3.869065 AGACACAACTCGGTTCAAGAAA 58.131 40.909 0.00 0.00 0.00 2.52
39 40 4.451900 AGACACAACTCGGTTCAAGAAAT 58.548 39.130 0.00 0.00 0.00 2.17
40 41 4.273480 AGACACAACTCGGTTCAAGAAATG 59.727 41.667 0.00 0.00 0.00 2.32
41 42 3.315191 ACACAACTCGGTTCAAGAAATGG 59.685 43.478 0.00 0.00 0.00 3.16
42 43 2.884639 ACAACTCGGTTCAAGAAATGGG 59.115 45.455 0.00 0.00 0.00 4.00
43 44 1.534729 ACTCGGTTCAAGAAATGGGC 58.465 50.000 0.00 0.00 0.00 5.36
44 45 0.447801 CTCGGTTCAAGAAATGGGCG 59.552 55.000 0.00 0.00 0.00 6.13
45 46 0.958382 TCGGTTCAAGAAATGGGCGG 60.958 55.000 0.00 0.00 0.00 6.13
46 47 1.215382 GGTTCAAGAAATGGGCGGC 59.785 57.895 0.00 0.00 0.00 6.53
47 48 1.215382 GTTCAAGAAATGGGCGGCC 59.785 57.895 23.42 23.42 0.00 6.13
48 49 1.076549 TTCAAGAAATGGGCGGCCT 59.923 52.632 29.87 9.12 0.00 5.19
49 50 1.250154 TTCAAGAAATGGGCGGCCTG 61.250 55.000 29.87 17.61 0.00 4.85
50 51 2.362889 AAGAAATGGGCGGCCTGG 60.363 61.111 29.87 0.00 0.00 4.45
51 52 3.224007 AAGAAATGGGCGGCCTGGT 62.224 57.895 29.87 13.61 0.00 4.00
52 53 3.140814 GAAATGGGCGGCCTGGTC 61.141 66.667 29.87 18.26 0.00 4.02
59 60 2.975799 GCGGCCTGGTCGACAAAA 60.976 61.111 26.96 1.00 29.41 2.44
60 61 2.966309 GCGGCCTGGTCGACAAAAG 61.966 63.158 26.96 11.20 29.41 2.27
61 62 1.597027 CGGCCTGGTCGACAAAAGT 60.597 57.895 17.19 0.00 29.41 2.66
62 63 1.841663 CGGCCTGGTCGACAAAAGTG 61.842 60.000 17.19 6.99 29.41 3.16
63 64 0.818040 GGCCTGGTCGACAAAAGTGT 60.818 55.000 18.91 0.00 42.10 3.55
64 65 1.541670 GGCCTGGTCGACAAAAGTGTA 60.542 52.381 18.91 0.00 38.41 2.90
65 66 2.423577 GCCTGGTCGACAAAAGTGTAT 58.576 47.619 18.91 0.00 38.41 2.29
66 67 2.159627 GCCTGGTCGACAAAAGTGTATG 59.840 50.000 18.91 0.23 38.41 2.39
67 68 3.659786 CCTGGTCGACAAAAGTGTATGA 58.340 45.455 18.91 0.00 38.41 2.15
68 69 3.679980 CCTGGTCGACAAAAGTGTATGAG 59.320 47.826 18.91 0.00 38.41 2.90
69 70 4.556233 CTGGTCGACAAAAGTGTATGAGA 58.444 43.478 18.91 0.00 38.41 3.27
70 71 4.951254 TGGTCGACAAAAGTGTATGAGAA 58.049 39.130 18.91 0.00 38.41 2.87
71 72 5.361427 TGGTCGACAAAAGTGTATGAGAAA 58.639 37.500 18.91 0.00 38.41 2.52
72 73 5.465390 TGGTCGACAAAAGTGTATGAGAAAG 59.535 40.000 18.91 0.00 38.41 2.62
73 74 5.694910 GGTCGACAAAAGTGTATGAGAAAGA 59.305 40.000 18.91 0.00 38.41 2.52
74 75 6.369065 GGTCGACAAAAGTGTATGAGAAAGAT 59.631 38.462 18.91 0.00 38.41 2.40
75 76 7.095187 GGTCGACAAAAGTGTATGAGAAAGATT 60.095 37.037 18.91 0.00 38.41 2.40
76 77 7.952637 GTCGACAAAAGTGTATGAGAAAGATTC 59.047 37.037 11.55 0.00 38.41 2.52
77 78 7.117812 TCGACAAAAGTGTATGAGAAAGATTCC 59.882 37.037 0.00 0.00 38.41 3.01
78 79 7.095229 CGACAAAAGTGTATGAGAAAGATTCCA 60.095 37.037 0.00 0.00 38.41 3.53
79 80 7.875971 ACAAAAGTGTATGAGAAAGATTCCAC 58.124 34.615 0.00 0.00 35.72 4.02
80 81 7.721399 ACAAAAGTGTATGAGAAAGATTCCACT 59.279 33.333 0.00 0.00 35.72 4.00
81 82 7.913674 AAAGTGTATGAGAAAGATTCCACTC 57.086 36.000 0.00 0.00 30.39 3.51
82 83 5.983540 AGTGTATGAGAAAGATTCCACTCC 58.016 41.667 0.00 0.00 0.00 3.85
83 84 4.806247 GTGTATGAGAAAGATTCCACTCCG 59.194 45.833 0.00 0.00 0.00 4.63
84 85 3.550437 ATGAGAAAGATTCCACTCCGG 57.450 47.619 0.00 0.00 0.00 5.14
85 86 1.066143 TGAGAAAGATTCCACTCCGGC 60.066 52.381 0.00 0.00 33.14 6.13
86 87 0.984230 AGAAAGATTCCACTCCGGCA 59.016 50.000 0.00 0.00 33.14 5.69
87 88 1.087501 GAAAGATTCCACTCCGGCAC 58.912 55.000 0.00 0.00 33.14 5.01
88 89 0.693049 AAAGATTCCACTCCGGCACT 59.307 50.000 0.00 0.00 33.14 4.40
89 90 0.693049 AAGATTCCACTCCGGCACTT 59.307 50.000 0.00 0.00 33.14 3.16
90 91 0.036010 AGATTCCACTCCGGCACTTG 60.036 55.000 0.00 0.00 33.14 3.16
91 92 1.648467 GATTCCACTCCGGCACTTGC 61.648 60.000 0.00 0.00 41.14 4.01
92 93 2.410322 ATTCCACTCCGGCACTTGCA 62.410 55.000 0.00 0.00 44.36 4.08
93 94 3.357079 CCACTCCGGCACTTGCAC 61.357 66.667 0.00 0.00 44.36 4.57
94 95 2.591429 CACTCCGGCACTTGCACA 60.591 61.111 0.00 0.00 44.36 4.57
95 96 2.281070 ACTCCGGCACTTGCACAG 60.281 61.111 0.00 0.00 44.36 3.66
96 97 3.730761 CTCCGGCACTTGCACAGC 61.731 66.667 0.00 0.00 44.36 4.40
97 98 4.254709 TCCGGCACTTGCACAGCT 62.255 61.111 0.00 0.00 44.36 4.24
98 99 2.358615 CCGGCACTTGCACAGCTA 60.359 61.111 3.15 0.00 44.36 3.32
99 100 2.393768 CCGGCACTTGCACAGCTAG 61.394 63.158 3.15 0.00 44.36 3.42
100 101 2.873288 GGCACTTGCACAGCTAGC 59.127 61.111 6.62 6.62 44.36 3.42
101 102 1.673665 GGCACTTGCACAGCTAGCT 60.674 57.895 12.68 12.68 44.36 3.32
102 103 0.391661 GGCACTTGCACAGCTAGCTA 60.392 55.000 18.86 0.00 44.36 3.32
103 104 0.723981 GCACTTGCACAGCTAGCTAC 59.276 55.000 18.86 10.70 41.59 3.58
104 105 0.994995 CACTTGCACAGCTAGCTACG 59.005 55.000 18.86 12.52 35.00 3.51
105 106 0.888619 ACTTGCACAGCTAGCTACGA 59.111 50.000 18.86 8.99 35.00 3.43
106 107 1.478510 ACTTGCACAGCTAGCTACGAT 59.521 47.619 18.86 0.06 35.00 3.73
107 108 2.123342 CTTGCACAGCTAGCTACGATC 58.877 52.381 18.86 5.85 0.00 3.69
108 109 1.393603 TGCACAGCTAGCTACGATCT 58.606 50.000 18.86 0.00 0.00 2.75
109 110 2.572290 TGCACAGCTAGCTACGATCTA 58.428 47.619 18.86 0.00 0.00 1.98
110 111 2.550180 TGCACAGCTAGCTACGATCTAG 59.450 50.000 18.86 4.81 37.25 2.43
111 112 2.809119 GCACAGCTAGCTACGATCTAGA 59.191 50.000 18.86 0.00 36.50 2.43
112 113 3.438781 GCACAGCTAGCTACGATCTAGAT 59.561 47.826 18.86 4.47 36.50 1.98
113 114 4.083003 GCACAGCTAGCTACGATCTAGATT 60.083 45.833 18.86 0.00 36.50 2.40
114 115 5.563867 GCACAGCTAGCTACGATCTAGATTT 60.564 44.000 18.86 0.00 36.50 2.17
115 116 6.442952 CACAGCTAGCTACGATCTAGATTTT 58.557 40.000 18.86 0.00 36.50 1.82
116 117 6.920758 CACAGCTAGCTACGATCTAGATTTTT 59.079 38.462 18.86 0.00 36.50 1.94
171 172 3.361794 TCGAGAGAGAATGCATGCTAC 57.638 47.619 20.33 5.20 34.84 3.58
172 173 2.954989 TCGAGAGAGAATGCATGCTACT 59.045 45.455 20.33 10.30 34.84 2.57
173 174 4.137543 TCGAGAGAGAATGCATGCTACTA 58.862 43.478 20.33 0.00 34.84 1.82
174 175 4.215185 TCGAGAGAGAATGCATGCTACTAG 59.785 45.833 20.33 10.58 34.84 2.57
175 176 4.215185 CGAGAGAGAATGCATGCTACTAGA 59.785 45.833 20.33 0.00 0.00 2.43
176 177 5.106197 CGAGAGAGAATGCATGCTACTAGAT 60.106 44.000 20.33 0.00 0.00 1.98
177 178 6.570186 CGAGAGAGAATGCATGCTACTAGATT 60.570 42.308 20.33 8.85 0.00 2.40
178 179 7.065120 AGAGAGAATGCATGCTACTAGATTT 57.935 36.000 20.33 0.71 0.00 2.17
179 180 7.507829 AGAGAGAATGCATGCTACTAGATTTT 58.492 34.615 20.33 4.10 0.00 1.82
180 181 7.992033 AGAGAGAATGCATGCTACTAGATTTTT 59.008 33.333 20.33 2.06 0.00 1.94
181 182 9.265901 GAGAGAATGCATGCTACTAGATTTTTA 57.734 33.333 20.33 0.00 0.00 1.52
182 183 9.618890 AGAGAATGCATGCTACTAGATTTTTAA 57.381 29.630 20.33 0.00 0.00 1.52
183 184 9.875675 GAGAATGCATGCTACTAGATTTTTAAG 57.124 33.333 20.33 0.00 0.00 1.85
184 185 9.618890 AGAATGCATGCTACTAGATTTTTAAGA 57.381 29.630 20.33 0.00 0.00 2.10
185 186 9.875675 GAATGCATGCTACTAGATTTTTAAGAG 57.124 33.333 20.33 0.00 0.00 2.85
186 187 7.792374 TGCATGCTACTAGATTTTTAAGAGG 57.208 36.000 20.33 0.00 0.00 3.69
187 188 6.260936 TGCATGCTACTAGATTTTTAAGAGGC 59.739 38.462 20.33 0.00 0.00 4.70
188 189 6.564873 GCATGCTACTAGATTTTTAAGAGGCG 60.565 42.308 11.37 0.00 0.00 5.52
189 190 5.357257 TGCTACTAGATTTTTAAGAGGCGG 58.643 41.667 0.00 0.00 0.00 6.13
190 191 5.128171 TGCTACTAGATTTTTAAGAGGCGGA 59.872 40.000 0.00 0.00 0.00 5.54
191 192 5.692654 GCTACTAGATTTTTAAGAGGCGGAG 59.307 44.000 0.00 0.00 0.00 4.63
192 193 5.934402 ACTAGATTTTTAAGAGGCGGAGA 57.066 39.130 0.00 0.00 0.00 3.71
193 194 6.487299 ACTAGATTTTTAAGAGGCGGAGAT 57.513 37.500 0.00 0.00 0.00 2.75
194 195 7.598759 ACTAGATTTTTAAGAGGCGGAGATA 57.401 36.000 0.00 0.00 0.00 1.98
195 196 8.196378 ACTAGATTTTTAAGAGGCGGAGATAT 57.804 34.615 0.00 0.00 0.00 1.63
196 197 8.308207 ACTAGATTTTTAAGAGGCGGAGATATC 58.692 37.037 0.00 0.00 0.00 1.63
197 198 7.067496 AGATTTTTAAGAGGCGGAGATATCA 57.933 36.000 5.32 0.00 0.00 2.15
198 199 6.931840 AGATTTTTAAGAGGCGGAGATATCAC 59.068 38.462 5.32 0.00 0.00 3.06
199 200 5.607939 TTTTAAGAGGCGGAGATATCACA 57.392 39.130 5.32 0.00 0.00 3.58
200 201 5.808366 TTTAAGAGGCGGAGATATCACAT 57.192 39.130 5.32 0.00 0.00 3.21
201 202 3.674528 AAGAGGCGGAGATATCACATG 57.325 47.619 5.32 0.00 0.00 3.21
202 203 2.881734 AGAGGCGGAGATATCACATGA 58.118 47.619 5.32 0.00 0.00 3.07
203 204 3.234353 AGAGGCGGAGATATCACATGAA 58.766 45.455 5.32 0.00 0.00 2.57
204 205 3.257873 AGAGGCGGAGATATCACATGAAG 59.742 47.826 5.32 0.00 0.00 3.02
205 206 2.301296 AGGCGGAGATATCACATGAAGG 59.699 50.000 5.32 0.00 0.00 3.46
206 207 2.300152 GGCGGAGATATCACATGAAGGA 59.700 50.000 5.32 0.00 0.00 3.36
207 208 3.321497 GCGGAGATATCACATGAAGGAC 58.679 50.000 5.32 0.00 0.00 3.85
208 209 3.006323 GCGGAGATATCACATGAAGGACT 59.994 47.826 5.32 0.00 0.00 3.85
209 210 4.502259 GCGGAGATATCACATGAAGGACTT 60.502 45.833 5.32 0.00 0.00 3.01
210 211 5.226396 CGGAGATATCACATGAAGGACTTC 58.774 45.833 5.32 5.14 39.91 3.01
277 278 1.068474 CCGTTGTAGTGCGAGAAAGG 58.932 55.000 0.00 0.00 0.00 3.11
278 279 1.336517 CCGTTGTAGTGCGAGAAAGGA 60.337 52.381 0.00 0.00 0.00 3.36
280 281 3.428452 CCGTTGTAGTGCGAGAAAGGATA 60.428 47.826 0.00 0.00 0.00 2.59
281 282 3.546670 CGTTGTAGTGCGAGAAAGGATAC 59.453 47.826 0.00 0.00 0.00 2.24
282 283 3.795623 TGTAGTGCGAGAAAGGATACC 57.204 47.619 0.00 0.00 37.17 2.73
283 284 3.093814 TGTAGTGCGAGAAAGGATACCA 58.906 45.455 0.00 0.00 37.17 3.25
296 297 2.076863 GGATACCACAGTGACACTTGC 58.923 52.381 5.04 0.00 0.00 4.01
304 305 1.003116 CAGTGACACTTGCACAGCTTC 60.003 52.381 5.04 0.00 38.70 3.86
306 307 0.819259 TGACACTTGCACAGCTTCCC 60.819 55.000 0.00 0.00 0.00 3.97
307 308 1.845809 GACACTTGCACAGCTTCCCG 61.846 60.000 0.00 0.00 0.00 5.14
309 310 2.979676 CTTGCACAGCTTCCCGCA 60.980 61.111 0.00 0.00 42.61 5.69
310 311 2.282391 TTGCACAGCTTCCCGCAT 60.282 55.556 0.00 0.00 42.61 4.73
311 312 2.537792 CTTGCACAGCTTCCCGCATG 62.538 60.000 0.00 0.00 42.61 4.06
312 313 4.487412 GCACAGCTTCCCGCATGC 62.487 66.667 7.91 7.91 43.00 4.06
313 314 3.818787 CACAGCTTCCCGCATGCC 61.819 66.667 13.15 0.00 42.61 4.40
314 315 4.349503 ACAGCTTCCCGCATGCCA 62.350 61.111 13.15 0.00 42.61 4.92
315 316 3.063704 CAGCTTCCCGCATGCCAA 61.064 61.111 13.15 1.50 42.61 4.52
316 317 2.283101 AGCTTCCCGCATGCCAAA 60.283 55.556 13.15 2.97 42.61 3.28
318 319 1.218854 GCTTCCCGCATGCCAAAAT 59.781 52.632 13.15 0.00 38.92 1.82
319 320 0.391528 GCTTCCCGCATGCCAAAATT 60.392 50.000 13.15 0.00 38.92 1.82
322 323 2.091852 TCCCGCATGCCAAAATTTTC 57.908 45.000 13.15 0.00 0.00 2.29
323 324 1.345741 TCCCGCATGCCAAAATTTTCA 59.654 42.857 13.15 0.00 0.00 2.69
325 326 2.096174 CCCGCATGCCAAAATTTTCATG 59.904 45.455 20.41 20.41 39.29 3.07
326 327 2.743126 CCGCATGCCAAAATTTTCATGT 59.257 40.909 23.20 3.20 38.72 3.21
327 328 3.931468 CCGCATGCCAAAATTTTCATGTA 59.069 39.130 23.20 8.75 38.72 2.29
328 329 4.571580 CCGCATGCCAAAATTTTCATGTAT 59.428 37.500 23.20 10.19 38.72 2.29
329 330 5.752472 CCGCATGCCAAAATTTTCATGTATA 59.248 36.000 23.20 2.41 38.72 1.47
330 331 6.292274 CCGCATGCCAAAATTTTCATGTATAC 60.292 38.462 23.20 12.37 38.72 1.47
331 332 6.476380 CGCATGCCAAAATTTTCATGTATACT 59.524 34.615 23.20 0.00 38.72 2.12
332 333 7.647318 CGCATGCCAAAATTTTCATGTATACTA 59.353 33.333 23.20 0.00 38.72 1.82
333 334 8.755018 GCATGCCAAAATTTTCATGTATACTAC 58.245 33.333 23.20 9.58 38.72 2.73
361 362 6.251655 AGATTTTCTCTTGAGACAATGCAC 57.748 37.500 14.41 3.72 0.00 4.57
365 366 2.231235 TCTCTTGAGACAATGCACGCTA 59.769 45.455 0.00 0.00 0.00 4.26
366 367 2.337583 TCTTGAGACAATGCACGCTAC 58.662 47.619 0.00 0.00 0.00 3.58
368 369 2.385013 TGAGACAATGCACGCTACAT 57.615 45.000 0.00 0.00 0.00 2.29
369 370 2.270923 TGAGACAATGCACGCTACATC 58.729 47.619 0.00 0.00 0.00 3.06
370 371 1.594862 GAGACAATGCACGCTACATCC 59.405 52.381 0.00 0.00 0.00 3.51
371 372 1.208052 AGACAATGCACGCTACATCCT 59.792 47.619 0.00 0.00 0.00 3.24
372 373 1.594862 GACAATGCACGCTACATCCTC 59.405 52.381 0.00 0.00 0.00 3.71
373 374 0.940126 CAATGCACGCTACATCCTCC 59.060 55.000 0.00 0.00 0.00 4.30
374 375 0.530650 AATGCACGCTACATCCTCCG 60.531 55.000 0.00 0.00 0.00 4.63
375 376 1.676678 ATGCACGCTACATCCTCCGT 61.677 55.000 0.00 0.00 0.00 4.69
376 377 1.153628 GCACGCTACATCCTCCGTT 60.154 57.895 0.00 0.00 0.00 4.44
377 378 1.146358 GCACGCTACATCCTCCGTTC 61.146 60.000 0.00 0.00 0.00 3.95
378 379 0.527817 CACGCTACATCCTCCGTTCC 60.528 60.000 0.00 0.00 0.00 3.62
379 380 0.683504 ACGCTACATCCTCCGTTCCT 60.684 55.000 0.00 0.00 0.00 3.36
380 381 1.315690 CGCTACATCCTCCGTTCCTA 58.684 55.000 0.00 0.00 0.00 2.94
381 382 1.679680 CGCTACATCCTCCGTTCCTAA 59.320 52.381 0.00 0.00 0.00 2.69
382 383 2.100252 CGCTACATCCTCCGTTCCTAAA 59.900 50.000 0.00 0.00 0.00 1.85
383 384 3.243771 CGCTACATCCTCCGTTCCTAAAT 60.244 47.826 0.00 0.00 0.00 1.40
384 385 4.022589 CGCTACATCCTCCGTTCCTAAATA 60.023 45.833 0.00 0.00 0.00 1.40
385 386 5.336531 CGCTACATCCTCCGTTCCTAAATAT 60.337 44.000 0.00 0.00 0.00 1.28
386 387 6.127814 CGCTACATCCTCCGTTCCTAAATATA 60.128 42.308 0.00 0.00 0.00 0.86
387 388 7.576287 CGCTACATCCTCCGTTCCTAAATATAA 60.576 40.741 0.00 0.00 0.00 0.98
388 389 7.760340 GCTACATCCTCCGTTCCTAAATATAAG 59.240 40.741 0.00 0.00 0.00 1.73
389 390 7.613551 ACATCCTCCGTTCCTAAATATAAGT 57.386 36.000 0.00 0.00 0.00 2.24
390 391 7.668492 ACATCCTCCGTTCCTAAATATAAGTC 58.332 38.462 0.00 0.00 0.00 3.01
391 392 7.509659 ACATCCTCCGTTCCTAAATATAAGTCT 59.490 37.037 0.00 0.00 0.00 3.24
392 393 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
393 394 8.315220 TCCTCCGTTCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
394 395 8.202137 TCCTCCGTTCCTAAATATAAGTCTTTG 58.798 37.037 0.00 0.00 0.00 2.77
395 396 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
413 414 9.646427 AGTCTTTGTAGAGATTTCACTATGAAC 57.354 33.333 0.00 0.00 35.89 3.18
414 415 9.646427 GTCTTTGTAGAGATTTCACTATGAACT 57.354 33.333 0.00 0.00 35.89 3.01
422 423 9.121658 AGAGATTTCACTATGAACTACATACGA 57.878 33.333 0.00 0.00 35.89 3.43
423 424 9.731819 GAGATTTCACTATGAACTACATACGAA 57.268 33.333 0.00 0.00 35.89 3.85
426 427 9.817809 ATTTCACTATGAACTACATACGAATGT 57.182 29.630 0.00 0.00 41.65 2.71
468 469 3.567530 TGAATTCATTCACTTTGCTGCG 58.432 40.909 3.38 0.00 41.51 5.18
469 470 3.004629 TGAATTCATTCACTTTGCTGCGT 59.995 39.130 3.38 0.00 41.51 5.24
470 471 4.215185 TGAATTCATTCACTTTGCTGCGTA 59.785 37.500 3.38 0.00 41.51 4.42
471 472 4.970662 ATTCATTCACTTTGCTGCGTAT 57.029 36.364 0.00 0.00 0.00 3.06
472 473 3.745332 TCATTCACTTTGCTGCGTATG 57.255 42.857 0.00 0.00 0.00 2.39
473 474 3.073678 TCATTCACTTTGCTGCGTATGT 58.926 40.909 0.00 0.00 0.00 2.29
474 475 4.249661 TCATTCACTTTGCTGCGTATGTA 58.750 39.130 0.00 0.00 0.00 2.29
475 476 4.329801 TCATTCACTTTGCTGCGTATGTAG 59.670 41.667 0.00 0.00 0.00 2.74
476 477 3.313012 TCACTTTGCTGCGTATGTAGT 57.687 42.857 1.82 0.00 0.00 2.73
477 478 3.659786 TCACTTTGCTGCGTATGTAGTT 58.340 40.909 1.82 0.00 0.00 2.24
478 479 3.678072 TCACTTTGCTGCGTATGTAGTTC 59.322 43.478 1.82 0.00 0.00 3.01
479 480 3.431912 CACTTTGCTGCGTATGTAGTTCA 59.568 43.478 1.82 0.00 0.00 3.18
480 481 4.093408 CACTTTGCTGCGTATGTAGTTCAT 59.907 41.667 1.82 0.00 40.25 2.57
481 482 4.695455 ACTTTGCTGCGTATGTAGTTCATT 59.305 37.500 1.82 0.00 37.91 2.57
482 483 5.181245 ACTTTGCTGCGTATGTAGTTCATTT 59.819 36.000 1.82 0.00 37.91 2.32
483 484 6.370442 ACTTTGCTGCGTATGTAGTTCATTTA 59.630 34.615 1.82 0.00 37.91 1.40
484 485 6.729391 TTGCTGCGTATGTAGTTCATTTAA 57.271 33.333 1.82 0.00 37.91 1.52
485 486 6.918892 TGCTGCGTATGTAGTTCATTTAAT 57.081 33.333 1.82 0.00 37.91 1.40
486 487 8.426881 TTGCTGCGTATGTAGTTCATTTAATA 57.573 30.769 1.82 0.00 37.91 0.98
487 488 8.426881 TGCTGCGTATGTAGTTCATTTAATAA 57.573 30.769 1.82 0.00 37.91 1.40
488 489 8.884726 TGCTGCGTATGTAGTTCATTTAATAAA 58.115 29.630 1.82 0.00 37.91 1.40
489 490 9.710979 GCTGCGTATGTAGTTCATTTAATAAAA 57.289 29.630 1.82 0.00 37.91 1.52
518 519 9.211485 TCTAAAAAGACTTACATTTAGGAACGG 57.789 33.333 13.94 0.00 36.48 4.44
519 520 9.211485 CTAAAAAGACTTACATTTAGGAACGGA 57.789 33.333 8.91 0.00 33.69 4.69
520 521 7.668525 AAAAGACTTACATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
521 522 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
522 523 5.021458 AGACTTACATTTAGGAACGGAGGA 58.979 41.667 0.00 0.00 0.00 3.71
523 524 5.482878 AGACTTACATTTAGGAACGGAGGAA 59.517 40.000 0.00 0.00 0.00 3.36
524 525 5.731591 ACTTACATTTAGGAACGGAGGAAG 58.268 41.667 0.00 0.00 0.00 3.46
525 526 5.247792 ACTTACATTTAGGAACGGAGGAAGT 59.752 40.000 0.00 0.00 0.00 3.01
526 527 6.438425 ACTTACATTTAGGAACGGAGGAAGTA 59.562 38.462 0.00 0.00 0.00 2.24
527 528 5.952347 ACATTTAGGAACGGAGGAAGTAT 57.048 39.130 0.00 0.00 0.00 2.12
528 529 8.537728 TTACATTTAGGAACGGAGGAAGTATA 57.462 34.615 0.00 0.00 0.00 1.47
529 530 7.613551 ACATTTAGGAACGGAGGAAGTATAT 57.386 36.000 0.00 0.00 0.00 0.86
530 531 8.030913 ACATTTAGGAACGGAGGAAGTATATT 57.969 34.615 0.00 0.00 0.00 1.28
533 534 9.916360 ATTTAGGAACGGAGGAAGTATATTTTT 57.084 29.630 0.00 0.00 0.00 1.94
538 539 9.557061 GGAACGGAGGAAGTATATTTTTAAGAT 57.443 33.333 0.00 0.00 0.00 2.40
541 542 7.990886 ACGGAGGAAGTATATTTTTAAGATGCA 59.009 33.333 0.00 0.00 0.00 3.96
545 546 9.061435 AGGAAGTATATTTTTAAGATGCAGAGC 57.939 33.333 0.00 0.00 0.00 4.09
546 547 8.293157 GGAAGTATATTTTTAAGATGCAGAGCC 58.707 37.037 0.00 0.00 0.00 4.70
561 562 3.805207 CAGAGCCATCACATGAGATTGA 58.195 45.455 8.16 0.00 0.00 2.57
575 580 3.265221 TGAGATTGATGAGCAAAGAGGGT 59.735 43.478 0.00 0.00 40.48 4.34
576 581 3.618351 AGATTGATGAGCAAAGAGGGTG 58.382 45.455 0.00 0.00 40.48 4.61
591 596 3.775654 GTGGCGGCAGCTAGGAGT 61.776 66.667 13.91 0.00 44.37 3.85
592 597 2.043349 TGGCGGCAGCTAGGAGTA 60.043 61.111 7.97 0.00 44.37 2.59
593 598 2.127869 TGGCGGCAGCTAGGAGTAG 61.128 63.158 7.97 0.00 44.37 2.57
615 637 1.642037 CCACAGCTCATGGACGCAAG 61.642 60.000 7.67 0.00 39.87 4.01
819 865 1.208293 TGGACCATATAAGCACACGCA 59.792 47.619 0.00 0.00 42.27 5.24
849 899 1.410850 ATCCATCCGGCCACTCGATT 61.411 55.000 2.24 0.00 0.00 3.34
854 904 2.202932 CGGCCACTCGATTCCCAG 60.203 66.667 2.24 0.00 0.00 4.45
909 970 2.820330 CTTCTCCCTTCTTCTGATCGC 58.180 52.381 0.00 0.00 0.00 4.58
926 987 1.225991 GCGTGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
927 988 1.906994 GCGTGTGTGTGTGTGTGTGT 61.907 55.000 0.00 0.00 0.00 3.72
928 989 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
929 990 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
930 991 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
931 992 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
932 993 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
933 994 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
934 995 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
935 996 1.152510 GTGTGTGTGTGTGTGTGTGA 58.847 50.000 0.00 0.00 0.00 3.58
936 997 1.128507 GTGTGTGTGTGTGTGTGTGAG 59.871 52.381 0.00 0.00 0.00 3.51
937 998 1.001406 TGTGTGTGTGTGTGTGTGAGA 59.999 47.619 0.00 0.00 0.00 3.27
938 999 2.073056 GTGTGTGTGTGTGTGTGAGAA 58.927 47.619 0.00 0.00 0.00 2.87
939 1000 2.482336 GTGTGTGTGTGTGTGTGAGAAA 59.518 45.455 0.00 0.00 0.00 2.52
940 1001 2.741517 TGTGTGTGTGTGTGTGAGAAAG 59.258 45.455 0.00 0.00 0.00 2.62
941 1002 3.000041 GTGTGTGTGTGTGTGAGAAAGA 59.000 45.455 0.00 0.00 0.00 2.52
948 1009 4.586421 TGTGTGTGTGAGAAAGAGAGAGAT 59.414 41.667 0.00 0.00 0.00 2.75
1080 1148 4.180946 CCGACGGACGAGGAGCTG 62.181 72.222 8.64 0.00 45.77 4.24
1223 1295 3.057806 CCGATCACCGCTGTATGTATGTA 60.058 47.826 0.00 0.00 36.84 2.29
1226 1298 6.319399 CGATCACCGCTGTATGTATGTAATA 58.681 40.000 0.00 0.00 0.00 0.98
1595 1780 3.637229 CGTCTCCATGAGGGTATGTAACT 59.363 47.826 0.00 0.00 38.11 2.24
1865 2068 7.482169 AACCTGAGATGACTGTGATTAGTAA 57.518 36.000 0.00 0.00 0.00 2.24
1907 2130 3.575630 TCACATCGAGCTGTACTTTGAC 58.424 45.455 0.00 0.00 0.00 3.18
1933 2156 2.238847 TACCATGGGAGTGAGCACGC 62.239 60.000 18.09 0.00 36.20 5.34
1953 2177 4.616802 ACGCGAGATGCTTAATTTGTTTTG 59.383 37.500 15.93 0.00 43.27 2.44
1963 2187 6.315891 TGCTTAATTTGTTTTGCTCTGCTTTT 59.684 30.769 0.00 0.00 0.00 2.27
1973 2197 6.594788 TTTGCTCTGCTTTTATTGGAGAAT 57.405 33.333 0.00 0.00 31.78 2.40
1974 2198 5.571784 TGCTCTGCTTTTATTGGAGAATG 57.428 39.130 0.00 0.00 31.78 2.67
1990 2214 3.431055 TGGAACAGCTTTGCGTGG 58.569 55.556 0.00 0.00 0.00 4.94
2006 2258 0.830648 GTGGGTAGCTAGTGGCATGA 59.169 55.000 0.00 0.00 44.79 3.07
2105 2382 9.825972 GGTACCGATATTGATTGATTTATGTTG 57.174 33.333 0.00 0.00 0.00 3.33
2108 2385 9.950680 ACCGATATTGATTGATTTATGTTGTTC 57.049 29.630 0.00 0.00 0.00 3.18
2144 2429 1.593787 CAGCTCGATGACTGGGTGT 59.406 57.895 3.06 0.00 0.00 4.16
2302 2620 4.960866 CAGCACCACCAGCAGCCA 62.961 66.667 0.00 0.00 0.00 4.75
2357 2675 2.913887 GAGCTGTTCGACGACTACG 58.086 57.895 0.00 0.00 45.75 3.51
2364 2682 2.816692 TTCGACGACTACGCGTTCGG 62.817 60.000 30.03 17.33 45.72 4.30
2483 2801 0.035630 AGTGGAGCCGTCGTACTACT 60.036 55.000 0.00 0.00 0.00 2.57
2488 2806 2.711924 CCGTCGTACTACTCGCCC 59.288 66.667 0.00 0.00 0.00 6.13
2714 3033 2.548067 GCTCTTCACGACCCTTCTTCAA 60.548 50.000 0.00 0.00 0.00 2.69
2721 3040 3.681897 CACGACCCTTCTTCAAGATCTTG 59.318 47.826 26.56 26.56 41.71 3.02
2731 3050 7.390996 CCTTCTTCAAGATCTTGCAGCATATAT 59.609 37.037 27.45 0.00 40.24 0.86
2772 3091 2.361119 TCTCAGTAAACCCCATCGATCG 59.639 50.000 9.36 9.36 0.00 3.69
3059 3378 1.203994 CTCGTCCTTACCCATGTTCGT 59.796 52.381 0.00 0.00 0.00 3.85
3075 3394 5.408880 TGTTCGTCATGGGTATGTTCTTA 57.591 39.130 0.00 0.00 35.73 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.891580 TGTCTCTTGTCGTTAGAGGCTT 59.108 45.455 13.78 0.00 43.22 4.35
1 2 2.229302 GTGTCTCTTGTCGTTAGAGGCT 59.771 50.000 13.78 0.00 43.22 4.58
3 4 3.917329 TGTGTCTCTTGTCGTTAGAGG 57.083 47.619 9.95 0.00 39.66 3.69
4 5 4.861210 AGTTGTGTCTCTTGTCGTTAGAG 58.139 43.478 0.00 0.00 40.39 2.43
5 6 4.554134 CGAGTTGTGTCTCTTGTCGTTAGA 60.554 45.833 0.00 0.00 32.83 2.10
6 7 3.664486 CGAGTTGTGTCTCTTGTCGTTAG 59.336 47.826 0.00 0.00 32.83 2.34
7 8 3.549423 CCGAGTTGTGTCTCTTGTCGTTA 60.549 47.826 0.00 0.00 32.83 3.18
8 9 2.460918 CGAGTTGTGTCTCTTGTCGTT 58.539 47.619 0.00 0.00 32.83 3.85
9 10 1.269102 CCGAGTTGTGTCTCTTGTCGT 60.269 52.381 0.00 0.00 32.83 4.34
10 11 1.269102 ACCGAGTTGTGTCTCTTGTCG 60.269 52.381 0.00 0.00 32.83 4.35
11 12 2.510768 ACCGAGTTGTGTCTCTTGTC 57.489 50.000 0.00 0.00 32.83 3.18
12 13 2.167693 TGAACCGAGTTGTGTCTCTTGT 59.832 45.455 0.00 0.00 32.83 3.16
13 14 2.821546 TGAACCGAGTTGTGTCTCTTG 58.178 47.619 0.00 0.00 32.83 3.02
14 15 3.132289 TCTTGAACCGAGTTGTGTCTCTT 59.868 43.478 0.00 0.00 32.83 2.85
15 16 2.693591 TCTTGAACCGAGTTGTGTCTCT 59.306 45.455 0.00 0.00 32.83 3.10
16 17 3.093717 TCTTGAACCGAGTTGTGTCTC 57.906 47.619 0.00 0.00 0.00 3.36
17 18 3.536956 TTCTTGAACCGAGTTGTGTCT 57.463 42.857 0.00 0.00 0.00 3.41
18 19 4.527564 CATTTCTTGAACCGAGTTGTGTC 58.472 43.478 0.00 0.00 0.00 3.67
19 20 3.315191 CCATTTCTTGAACCGAGTTGTGT 59.685 43.478 0.00 0.00 0.00 3.72
20 21 3.304659 CCCATTTCTTGAACCGAGTTGTG 60.305 47.826 0.00 0.00 0.00 3.33
21 22 2.884639 CCCATTTCTTGAACCGAGTTGT 59.115 45.455 0.00 0.00 0.00 3.32
22 23 2.351738 GCCCATTTCTTGAACCGAGTTG 60.352 50.000 0.00 0.00 0.00 3.16
23 24 1.886542 GCCCATTTCTTGAACCGAGTT 59.113 47.619 0.00 0.00 0.00 3.01
24 25 1.534729 GCCCATTTCTTGAACCGAGT 58.465 50.000 0.00 0.00 0.00 4.18
25 26 0.447801 CGCCCATTTCTTGAACCGAG 59.552 55.000 0.00 0.00 0.00 4.63
26 27 0.958382 CCGCCCATTTCTTGAACCGA 60.958 55.000 0.00 0.00 0.00 4.69
27 28 1.506262 CCGCCCATTTCTTGAACCG 59.494 57.895 0.00 0.00 0.00 4.44
28 29 1.215382 GCCGCCCATTTCTTGAACC 59.785 57.895 0.00 0.00 0.00 3.62
29 30 1.215382 GGCCGCCCATTTCTTGAAC 59.785 57.895 0.00 0.00 0.00 3.18
30 31 1.076549 AGGCCGCCCATTTCTTGAA 59.923 52.632 5.55 0.00 0.00 2.69
31 32 1.678635 CAGGCCGCCCATTTCTTGA 60.679 57.895 5.55 0.00 0.00 3.02
32 33 2.713967 CCAGGCCGCCCATTTCTTG 61.714 63.158 5.55 0.00 0.00 3.02
33 34 2.362889 CCAGGCCGCCCATTTCTT 60.363 61.111 5.55 0.00 0.00 2.52
34 35 3.645268 GACCAGGCCGCCCATTTCT 62.645 63.158 5.55 0.00 0.00 2.52
35 36 3.140814 GACCAGGCCGCCCATTTC 61.141 66.667 5.55 0.00 0.00 2.17
42 43 2.966309 CTTTTGTCGACCAGGCCGC 61.966 63.158 14.12 0.00 0.00 6.53
43 44 1.597027 ACTTTTGTCGACCAGGCCG 60.597 57.895 14.12 0.00 0.00 6.13
44 45 0.818040 ACACTTTTGTCGACCAGGCC 60.818 55.000 14.12 0.00 0.00 5.19
45 46 1.873698 TACACTTTTGTCGACCAGGC 58.126 50.000 14.12 0.00 37.15 4.85
46 47 3.659786 TCATACACTTTTGTCGACCAGG 58.340 45.455 14.12 2.64 37.15 4.45
47 48 4.556233 TCTCATACACTTTTGTCGACCAG 58.444 43.478 14.12 8.94 37.15 4.00
48 49 4.594123 TCTCATACACTTTTGTCGACCA 57.406 40.909 14.12 0.00 37.15 4.02
49 50 5.694910 TCTTTCTCATACACTTTTGTCGACC 59.305 40.000 14.12 0.00 37.15 4.79
50 51 6.764877 TCTTTCTCATACACTTTTGTCGAC 57.235 37.500 9.11 9.11 37.15 4.20
51 52 7.117812 GGAATCTTTCTCATACACTTTTGTCGA 59.882 37.037 0.00 0.00 37.15 4.20
52 53 7.095229 TGGAATCTTTCTCATACACTTTTGTCG 60.095 37.037 0.00 0.00 37.15 4.35
53 54 8.017946 GTGGAATCTTTCTCATACACTTTTGTC 58.982 37.037 0.00 0.00 37.15 3.18
54 55 7.721399 AGTGGAATCTTTCTCATACACTTTTGT 59.279 33.333 0.00 0.00 40.02 2.83
55 56 8.103948 AGTGGAATCTTTCTCATACACTTTTG 57.896 34.615 0.00 0.00 34.59 2.44
56 57 7.391833 GGAGTGGAATCTTTCTCATACACTTTT 59.608 37.037 0.00 0.00 37.98 2.27
57 58 6.881602 GGAGTGGAATCTTTCTCATACACTTT 59.118 38.462 0.00 0.00 37.98 2.66
58 59 6.410540 GGAGTGGAATCTTTCTCATACACTT 58.589 40.000 0.00 0.00 37.98 3.16
59 60 5.394663 CGGAGTGGAATCTTTCTCATACACT 60.395 44.000 0.00 0.00 40.28 3.55
60 61 4.806247 CGGAGTGGAATCTTTCTCATACAC 59.194 45.833 0.00 0.00 0.00 2.90
61 62 4.141937 CCGGAGTGGAATCTTTCTCATACA 60.142 45.833 0.00 0.00 42.00 2.29
62 63 4.372656 CCGGAGTGGAATCTTTCTCATAC 58.627 47.826 0.00 0.00 42.00 2.39
63 64 3.181465 GCCGGAGTGGAATCTTTCTCATA 60.181 47.826 5.05 0.00 42.00 2.15
64 65 2.420687 GCCGGAGTGGAATCTTTCTCAT 60.421 50.000 5.05 0.00 42.00 2.90
65 66 1.066143 GCCGGAGTGGAATCTTTCTCA 60.066 52.381 5.05 0.00 42.00 3.27
66 67 1.066143 TGCCGGAGTGGAATCTTTCTC 60.066 52.381 5.05 0.00 42.00 2.87
67 68 0.984230 TGCCGGAGTGGAATCTTTCT 59.016 50.000 5.05 0.00 42.00 2.52
68 69 1.087501 GTGCCGGAGTGGAATCTTTC 58.912 55.000 5.05 0.00 42.00 2.62
69 70 0.693049 AGTGCCGGAGTGGAATCTTT 59.307 50.000 5.05 0.00 42.00 2.52
70 71 0.693049 AAGTGCCGGAGTGGAATCTT 59.307 50.000 5.05 0.00 42.00 2.40
71 72 0.036010 CAAGTGCCGGAGTGGAATCT 60.036 55.000 5.05 0.00 42.00 2.40
72 73 1.648467 GCAAGTGCCGGAGTGGAATC 61.648 60.000 5.05 0.00 42.00 2.52
73 74 1.675641 GCAAGTGCCGGAGTGGAAT 60.676 57.895 5.05 0.00 42.00 3.01
74 75 2.281484 GCAAGTGCCGGAGTGGAA 60.281 61.111 5.05 0.00 42.00 3.53
75 76 3.555324 TGCAAGTGCCGGAGTGGA 61.555 61.111 5.05 0.00 42.00 4.02
76 77 3.357079 GTGCAAGTGCCGGAGTGG 61.357 66.667 5.05 0.00 41.18 4.00
77 78 2.591429 TGTGCAAGTGCCGGAGTG 60.591 61.111 5.05 0.00 41.18 3.51
78 79 2.281070 CTGTGCAAGTGCCGGAGT 60.281 61.111 5.05 0.00 41.18 3.85
79 80 2.786539 TAGCTGTGCAAGTGCCGGAG 62.787 60.000 5.05 0.00 41.18 4.63
80 81 2.786539 CTAGCTGTGCAAGTGCCGGA 62.787 60.000 5.05 0.00 41.18 5.14
81 82 2.358615 TAGCTGTGCAAGTGCCGG 60.359 61.111 0.00 0.00 41.18 6.13
82 83 3.031964 GCTAGCTGTGCAAGTGCCG 62.032 63.158 7.70 0.00 41.18 5.69
83 84 0.391661 TAGCTAGCTGTGCAAGTGCC 60.392 55.000 27.68 0.00 41.18 5.01
84 85 0.723981 GTAGCTAGCTGTGCAAGTGC 59.276 55.000 27.68 0.00 42.50 4.40
85 86 0.994995 CGTAGCTAGCTGTGCAAGTG 59.005 55.000 27.68 3.98 0.00 3.16
86 87 0.888619 TCGTAGCTAGCTGTGCAAGT 59.111 50.000 27.68 0.22 0.00 3.16
87 88 2.123342 GATCGTAGCTAGCTGTGCAAG 58.877 52.381 27.68 9.59 0.00 4.01
88 89 1.751351 AGATCGTAGCTAGCTGTGCAA 59.249 47.619 27.68 3.39 0.00 4.08
89 90 1.393603 AGATCGTAGCTAGCTGTGCA 58.606 50.000 27.68 3.83 0.00 4.57
90 91 2.809119 TCTAGATCGTAGCTAGCTGTGC 59.191 50.000 27.68 15.35 36.22 4.57
91 92 5.621197 AATCTAGATCGTAGCTAGCTGTG 57.379 43.478 27.68 18.40 36.22 3.66
92 93 6.642707 AAAATCTAGATCGTAGCTAGCTGT 57.357 37.500 27.68 10.29 36.22 4.40
149 150 2.030371 AGCATGCATTCTCTCTCGAGA 58.970 47.619 21.98 15.70 44.32 4.04
150 151 2.512485 AGCATGCATTCTCTCTCGAG 57.488 50.000 21.98 5.93 38.67 4.04
151 152 2.954989 AGTAGCATGCATTCTCTCTCGA 59.045 45.455 21.98 0.00 0.00 4.04
152 153 3.367992 AGTAGCATGCATTCTCTCTCG 57.632 47.619 21.98 0.00 0.00 4.04
153 154 5.703978 TCTAGTAGCATGCATTCTCTCTC 57.296 43.478 21.98 0.00 0.00 3.20
154 155 6.669125 AATCTAGTAGCATGCATTCTCTCT 57.331 37.500 21.98 5.76 0.00 3.10
155 156 7.727331 AAAATCTAGTAGCATGCATTCTCTC 57.273 36.000 21.98 0.00 0.00 3.20
156 157 9.618890 TTAAAAATCTAGTAGCATGCATTCTCT 57.381 29.630 21.98 12.09 0.00 3.10
157 158 9.875675 CTTAAAAATCTAGTAGCATGCATTCTC 57.124 33.333 21.98 5.05 0.00 2.87
158 159 9.618890 TCTTAAAAATCTAGTAGCATGCATTCT 57.381 29.630 21.98 16.22 0.00 2.40
159 160 9.875675 CTCTTAAAAATCTAGTAGCATGCATTC 57.124 33.333 21.98 9.49 0.00 2.67
160 161 8.844244 CCTCTTAAAAATCTAGTAGCATGCATT 58.156 33.333 21.98 6.66 0.00 3.56
161 162 7.040823 GCCTCTTAAAAATCTAGTAGCATGCAT 60.041 37.037 21.98 7.92 0.00 3.96
162 163 6.260936 GCCTCTTAAAAATCTAGTAGCATGCA 59.739 38.462 21.98 2.77 0.00 3.96
163 164 6.564873 CGCCTCTTAAAAATCTAGTAGCATGC 60.565 42.308 10.51 10.51 0.00 4.06
164 165 6.073548 CCGCCTCTTAAAAATCTAGTAGCATG 60.074 42.308 0.00 0.00 0.00 4.06
165 166 5.992217 CCGCCTCTTAAAAATCTAGTAGCAT 59.008 40.000 0.00 0.00 0.00 3.79
166 167 5.128171 TCCGCCTCTTAAAAATCTAGTAGCA 59.872 40.000 0.00 0.00 0.00 3.49
167 168 5.598769 TCCGCCTCTTAAAAATCTAGTAGC 58.401 41.667 0.00 0.00 0.00 3.58
168 169 7.040473 TCTCCGCCTCTTAAAAATCTAGTAG 57.960 40.000 0.00 0.00 0.00 2.57
169 170 7.598759 ATCTCCGCCTCTTAAAAATCTAGTA 57.401 36.000 0.00 0.00 0.00 1.82
170 171 5.934402 TCTCCGCCTCTTAAAAATCTAGT 57.066 39.130 0.00 0.00 0.00 2.57
171 172 8.307483 TGATATCTCCGCCTCTTAAAAATCTAG 58.693 37.037 3.98 0.00 0.00 2.43
172 173 8.088981 GTGATATCTCCGCCTCTTAAAAATCTA 58.911 37.037 3.98 0.00 0.00 1.98
173 174 6.931840 GTGATATCTCCGCCTCTTAAAAATCT 59.068 38.462 3.98 0.00 0.00 2.40
174 175 6.706270 TGTGATATCTCCGCCTCTTAAAAATC 59.294 38.462 3.98 0.00 0.00 2.17
175 176 6.591935 TGTGATATCTCCGCCTCTTAAAAAT 58.408 36.000 3.98 0.00 0.00 1.82
176 177 5.984725 TGTGATATCTCCGCCTCTTAAAAA 58.015 37.500 3.98 0.00 0.00 1.94
177 178 5.607939 TGTGATATCTCCGCCTCTTAAAA 57.392 39.130 3.98 0.00 0.00 1.52
178 179 5.304357 TCATGTGATATCTCCGCCTCTTAAA 59.696 40.000 3.98 0.00 0.00 1.52
179 180 4.832823 TCATGTGATATCTCCGCCTCTTAA 59.167 41.667 3.98 0.00 0.00 1.85
180 181 4.407365 TCATGTGATATCTCCGCCTCTTA 58.593 43.478 3.98 0.00 0.00 2.10
181 182 3.234353 TCATGTGATATCTCCGCCTCTT 58.766 45.455 3.98 0.00 0.00 2.85
182 183 2.881734 TCATGTGATATCTCCGCCTCT 58.118 47.619 3.98 0.00 0.00 3.69
183 184 3.583806 CTTCATGTGATATCTCCGCCTC 58.416 50.000 3.98 0.00 0.00 4.70
184 185 2.301296 CCTTCATGTGATATCTCCGCCT 59.699 50.000 3.98 0.00 0.00 5.52
185 186 2.300152 TCCTTCATGTGATATCTCCGCC 59.700 50.000 3.98 0.00 0.00 6.13
186 187 3.006323 AGTCCTTCATGTGATATCTCCGC 59.994 47.826 3.98 0.00 0.00 5.54
187 188 4.862902 AGTCCTTCATGTGATATCTCCG 57.137 45.455 3.98 0.00 0.00 4.63
188 189 6.166984 TGAAGTCCTTCATGTGATATCTCC 57.833 41.667 5.64 0.00 43.90 3.71
220 221 2.203337 TGCGTTGGCTGGCTCTTT 60.203 55.556 2.00 0.00 40.82 2.52
221 222 2.980233 GTGCGTTGGCTGGCTCTT 60.980 61.111 2.00 0.00 40.82 2.85
239 240 2.475466 CCGGATGAGGTGTGCATGC 61.475 63.158 11.82 11.82 0.00 4.06
277 278 2.480419 GTGCAAGTGTCACTGTGGTATC 59.520 50.000 6.18 0.00 0.00 2.24
278 279 2.158827 TGTGCAAGTGTCACTGTGGTAT 60.159 45.455 6.18 0.00 35.58 2.73
280 281 0.035534 TGTGCAAGTGTCACTGTGGT 60.036 50.000 6.18 0.00 35.58 4.16
281 282 0.659427 CTGTGCAAGTGTCACTGTGG 59.341 55.000 6.18 0.77 35.58 4.17
282 283 0.028505 GCTGTGCAAGTGTCACTGTG 59.971 55.000 6.18 8.30 36.28 3.66
283 284 0.107508 AGCTGTGCAAGTGTCACTGT 60.108 50.000 6.18 0.00 36.28 3.55
304 305 1.805869 TGAAAATTTTGGCATGCGGG 58.194 45.000 12.44 0.00 0.00 6.13
306 307 5.721876 ATACATGAAAATTTTGGCATGCG 57.278 34.783 22.85 9.16 41.25 4.73
307 308 7.775397 AGTATACATGAAAATTTTGGCATGC 57.225 32.000 22.85 9.90 41.25 4.06
329 330 9.742144 TGTCTCAAGAGAAAATCTACTAGTAGT 57.258 33.333 25.58 8.14 39.48 2.73
332 333 9.868277 CATTGTCTCAAGAGAAAATCTACTAGT 57.132 33.333 11.62 0.00 42.04 2.57
333 334 8.816144 GCATTGTCTCAAGAGAAAATCTACTAG 58.184 37.037 11.62 2.98 42.04 2.57
336 337 7.239972 GTGCATTGTCTCAAGAGAAAATCTAC 58.760 38.462 11.62 10.06 42.04 2.59
338 339 5.106791 CGTGCATTGTCTCAAGAGAAAATCT 60.107 40.000 11.62 0.00 42.04 2.40
339 340 5.084722 CGTGCATTGTCTCAAGAGAAAATC 58.915 41.667 11.62 8.30 42.04 2.17
340 341 4.614535 GCGTGCATTGTCTCAAGAGAAAAT 60.615 41.667 9.23 9.23 44.13 1.82
341 342 3.303990 GCGTGCATTGTCTCAAGAGAAAA 60.304 43.478 5.23 5.23 38.88 2.29
342 343 2.224079 GCGTGCATTGTCTCAAGAGAAA 59.776 45.455 0.57 0.00 39.48 2.52
343 344 1.800586 GCGTGCATTGTCTCAAGAGAA 59.199 47.619 0.57 0.00 39.48 2.87
344 345 1.001293 AGCGTGCATTGTCTCAAGAGA 59.999 47.619 0.00 0.00 34.56 3.10
345 346 1.436600 AGCGTGCATTGTCTCAAGAG 58.563 50.000 0.00 0.00 0.00 2.85
346 347 2.288763 TGTAGCGTGCATTGTCTCAAGA 60.289 45.455 0.00 0.00 0.00 3.02
347 348 2.068519 TGTAGCGTGCATTGTCTCAAG 58.931 47.619 0.00 0.00 0.00 3.02
348 349 2.162319 TGTAGCGTGCATTGTCTCAA 57.838 45.000 0.00 0.00 0.00 3.02
349 350 2.270923 GATGTAGCGTGCATTGTCTCA 58.729 47.619 0.00 0.00 0.00 3.27
350 351 1.594862 GGATGTAGCGTGCATTGTCTC 59.405 52.381 0.00 0.00 0.00 3.36
354 355 0.940126 GGAGGATGTAGCGTGCATTG 59.060 55.000 0.00 0.00 0.00 2.82
361 362 1.315690 TAGGAACGGAGGATGTAGCG 58.684 55.000 0.00 0.00 0.00 4.26
365 366 7.509659 AGACTTATATTTAGGAACGGAGGATGT 59.490 37.037 0.00 0.00 0.00 3.06
366 367 7.897864 AGACTTATATTTAGGAACGGAGGATG 58.102 38.462 0.00 0.00 0.00 3.51
368 369 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
369 370 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
370 371 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
387 388 9.646427 GTTCATAGTGAAATCTCTACAAAGACT 57.354 33.333 0.00 0.00 38.22 3.24
388 389 9.646427 AGTTCATAGTGAAATCTCTACAAAGAC 57.354 33.333 0.00 0.00 38.22 3.01
396 397 9.121658 TCGTATGTAGTTCATAGTGAAATCTCT 57.878 33.333 0.00 0.00 38.22 3.10
397 398 9.731819 TTCGTATGTAGTTCATAGTGAAATCTC 57.268 33.333 0.00 0.00 38.22 2.75
400 401 9.817809 ACATTCGTATGTAGTTCATAGTGAAAT 57.182 29.630 5.81 0.00 43.12 2.17
447 448 3.004629 ACGCAGCAAAGTGAATGAATTCA 59.995 39.130 11.26 11.26 43.94 2.57
448 449 3.568538 ACGCAGCAAAGTGAATGAATTC 58.431 40.909 0.00 0.00 37.31 2.17
449 450 3.648339 ACGCAGCAAAGTGAATGAATT 57.352 38.095 0.00 0.00 0.00 2.17
450 451 4.156556 ACATACGCAGCAAAGTGAATGAAT 59.843 37.500 0.00 0.00 0.00 2.57
451 452 3.501828 ACATACGCAGCAAAGTGAATGAA 59.498 39.130 0.00 0.00 0.00 2.57
452 453 3.073678 ACATACGCAGCAAAGTGAATGA 58.926 40.909 0.00 0.00 0.00 2.57
453 454 3.476295 ACATACGCAGCAAAGTGAATG 57.524 42.857 0.00 0.00 0.00 2.67
454 455 4.253685 ACTACATACGCAGCAAAGTGAAT 58.746 39.130 0.00 0.00 0.00 2.57
455 456 3.659786 ACTACATACGCAGCAAAGTGAA 58.340 40.909 0.00 0.00 0.00 3.18
456 457 3.313012 ACTACATACGCAGCAAAGTGA 57.687 42.857 0.00 0.00 0.00 3.41
457 458 3.431912 TGAACTACATACGCAGCAAAGTG 59.568 43.478 0.00 0.00 0.00 3.16
458 459 3.659786 TGAACTACATACGCAGCAAAGT 58.340 40.909 0.00 0.00 0.00 2.66
459 460 4.864916 ATGAACTACATACGCAGCAAAG 57.135 40.909 0.00 0.00 37.46 2.77
460 461 5.621197 AAATGAACTACATACGCAGCAAA 57.379 34.783 0.00 0.00 38.38 3.68
461 462 6.729391 TTAAATGAACTACATACGCAGCAA 57.271 33.333 0.00 0.00 38.38 3.91
462 463 6.918892 ATTAAATGAACTACATACGCAGCA 57.081 33.333 0.00 0.00 38.38 4.41
463 464 9.710979 TTTTATTAAATGAACTACATACGCAGC 57.289 29.630 0.00 0.00 38.38 5.25
492 493 9.211485 CCGTTCCTAAATGTAAGTCTTTTTAGA 57.789 33.333 13.43 2.40 0.00 2.10
493 494 9.211485 TCCGTTCCTAAATGTAAGTCTTTTTAG 57.789 33.333 7.75 7.75 0.00 1.85
494 495 9.211485 CTCCGTTCCTAAATGTAAGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
495 496 7.174426 CCTCCGTTCCTAAATGTAAGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
496 497 6.653740 CCTCCGTTCCTAAATGTAAGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
497 498 6.013984 TCCTCCGTTCCTAAATGTAAGTCTTT 60.014 38.462 0.00 0.00 0.00 2.52
498 499 5.482878 TCCTCCGTTCCTAAATGTAAGTCTT 59.517 40.000 0.00 0.00 0.00 3.01
499 500 5.021458 TCCTCCGTTCCTAAATGTAAGTCT 58.979 41.667 0.00 0.00 0.00 3.24
500 501 5.334724 TCCTCCGTTCCTAAATGTAAGTC 57.665 43.478 0.00 0.00 0.00 3.01
501 502 5.247792 ACTTCCTCCGTTCCTAAATGTAAGT 59.752 40.000 0.00 0.00 0.00 2.24
502 503 5.731591 ACTTCCTCCGTTCCTAAATGTAAG 58.268 41.667 0.00 0.00 0.00 2.34
503 504 5.750352 ACTTCCTCCGTTCCTAAATGTAA 57.250 39.130 0.00 0.00 0.00 2.41
504 505 8.716674 ATATACTTCCTCCGTTCCTAAATGTA 57.283 34.615 0.00 0.00 0.00 2.29
505 506 5.952347 ATACTTCCTCCGTTCCTAAATGT 57.048 39.130 0.00 0.00 0.00 2.71
506 507 8.904099 AAATATACTTCCTCCGTTCCTAAATG 57.096 34.615 0.00 0.00 0.00 2.32
507 508 9.916360 AAAAATATACTTCCTCCGTTCCTAAAT 57.084 29.630 0.00 0.00 0.00 1.40
511 512 8.765517 TCTTAAAAATATACTTCCTCCGTTCCT 58.234 33.333 0.00 0.00 0.00 3.36
512 513 8.953368 TCTTAAAAATATACTTCCTCCGTTCC 57.047 34.615 0.00 0.00 0.00 3.62
514 515 8.837389 GCATCTTAAAAATATACTTCCTCCGTT 58.163 33.333 0.00 0.00 0.00 4.44
515 516 7.990886 TGCATCTTAAAAATATACTTCCTCCGT 59.009 33.333 0.00 0.00 0.00 4.69
516 517 8.378172 TGCATCTTAAAAATATACTTCCTCCG 57.622 34.615 0.00 0.00 0.00 4.63
517 518 9.561069 TCTGCATCTTAAAAATATACTTCCTCC 57.439 33.333 0.00 0.00 0.00 4.30
519 520 9.061435 GCTCTGCATCTTAAAAATATACTTCCT 57.939 33.333 0.00 0.00 0.00 3.36
520 521 8.293157 GGCTCTGCATCTTAAAAATATACTTCC 58.707 37.037 0.00 0.00 0.00 3.46
521 522 8.840321 TGGCTCTGCATCTTAAAAATATACTTC 58.160 33.333 0.00 0.00 0.00 3.01
522 523 8.752005 TGGCTCTGCATCTTAAAAATATACTT 57.248 30.769 0.00 0.00 0.00 2.24
523 524 8.930846 ATGGCTCTGCATCTTAAAAATATACT 57.069 30.769 0.00 0.00 0.00 2.12
524 525 8.786898 TGATGGCTCTGCATCTTAAAAATATAC 58.213 33.333 0.00 0.00 0.00 1.47
525 526 8.786898 GTGATGGCTCTGCATCTTAAAAATATA 58.213 33.333 0.00 0.00 0.00 0.86
526 527 7.286087 TGTGATGGCTCTGCATCTTAAAAATAT 59.714 33.333 0.00 0.00 0.00 1.28
527 528 6.602803 TGTGATGGCTCTGCATCTTAAAAATA 59.397 34.615 0.00 0.00 0.00 1.40
528 529 5.419788 TGTGATGGCTCTGCATCTTAAAAAT 59.580 36.000 0.00 0.00 0.00 1.82
529 530 4.766373 TGTGATGGCTCTGCATCTTAAAAA 59.234 37.500 0.00 0.00 0.00 1.94
530 531 4.334552 TGTGATGGCTCTGCATCTTAAAA 58.665 39.130 0.00 0.00 0.00 1.52
533 534 3.135167 TCATGTGATGGCTCTGCATCTTA 59.865 43.478 0.00 0.00 0.00 2.10
538 539 0.906775 TCTCATGTGATGGCTCTGCA 59.093 50.000 0.00 0.00 0.00 4.41
541 542 4.390264 CATCAATCTCATGTGATGGCTCT 58.610 43.478 10.87 0.00 44.86 4.09
561 562 1.377725 CGCCACCCTCTTTGCTCAT 60.378 57.895 0.00 0.00 0.00 2.90
575 580 2.043349 TACTCCTAGCTGCCGCCA 60.043 61.111 0.00 0.00 36.60 5.69
576 581 2.731374 CTACTCCTAGCTGCCGCC 59.269 66.667 0.00 0.00 36.60 6.13
582 587 1.479709 CTGTGGTGCTACTCCTAGCT 58.520 55.000 0.00 0.00 45.20 3.32
588 593 1.649664 CATGAGCTGTGGTGCTACTC 58.350 55.000 0.00 0.00 44.17 2.59
589 594 0.251354 CCATGAGCTGTGGTGCTACT 59.749 55.000 0.00 0.00 44.17 2.57
591 596 0.250234 GTCCATGAGCTGTGGTGCTA 59.750 55.000 13.04 0.00 44.17 3.49
593 598 2.393768 CGTCCATGAGCTGTGGTGC 61.394 63.158 13.04 7.82 37.96 5.01
594 599 2.393768 GCGTCCATGAGCTGTGGTG 61.394 63.158 13.04 9.06 37.96 4.17
595 600 2.046892 GCGTCCATGAGCTGTGGT 60.047 61.111 13.04 0.00 37.96 4.16
596 601 1.642037 CTTGCGTCCATGAGCTGTGG 61.642 60.000 8.19 8.19 38.11 4.17
676 711 2.031683 GCCGATTGGTTCGTTATTCCTG 59.968 50.000 0.00 0.00 46.65 3.86
722 757 2.509916 GCAGATGCTCAGGGAGGG 59.490 66.667 0.00 0.00 38.21 4.30
724 759 2.509916 GGGCAGATGCTCAGGGAG 59.490 66.667 4.59 0.00 42.27 4.30
725 760 3.092511 GGGGCAGATGCTCAGGGA 61.093 66.667 7.06 0.00 45.20 4.20
726 761 3.095163 AGGGGCAGATGCTCAGGG 61.095 66.667 7.06 0.00 45.20 4.45
727 762 2.509916 GAGGGGCAGATGCTCAGG 59.490 66.667 7.06 0.00 45.20 3.86
728 763 2.108566 CGAGGGGCAGATGCTCAG 59.891 66.667 7.06 0.00 45.20 3.35
729 764 2.364186 TCGAGGGGCAGATGCTCA 60.364 61.111 7.06 0.00 45.20 4.26
730 765 1.680522 TTCTCGAGGGGCAGATGCTC 61.681 60.000 13.56 0.00 41.88 4.26
731 766 1.687146 TTCTCGAGGGGCAGATGCT 60.687 57.895 13.56 0.00 41.70 3.79
734 778 2.066999 GGGTTCTCGAGGGGCAGAT 61.067 63.158 13.56 0.00 0.00 2.90
781 827 4.322953 GGTCCAAGGTATCTTGTCCGTTAA 60.323 45.833 14.58 0.00 46.65 2.01
819 865 3.861797 GATGGATGGACGGGGCGT 61.862 66.667 0.00 0.00 45.10 5.68
829 875 2.104572 ATCGAGTGGCCGGATGGATG 62.105 60.000 5.05 0.00 37.49 3.51
830 876 1.410850 AATCGAGTGGCCGGATGGAT 61.411 55.000 5.05 0.00 37.49 3.41
831 877 2.028125 GAATCGAGTGGCCGGATGGA 62.028 60.000 5.05 0.00 37.49 3.41
854 904 4.407296 ACTGAACCAGACCAGAATCTATCC 59.593 45.833 0.45 0.00 35.18 2.59
909 970 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
926 987 4.576216 TCTCTCTCTTTCTCACACACAC 57.424 45.455 0.00 0.00 0.00 3.82
927 988 5.076182 AGATCTCTCTCTTTCTCACACACA 58.924 41.667 0.00 0.00 0.00 3.72
928 989 5.643379 AGATCTCTCTCTTTCTCACACAC 57.357 43.478 0.00 0.00 0.00 3.82
929 990 5.772169 TCAAGATCTCTCTCTTTCTCACACA 59.228 40.000 0.00 0.00 33.18 3.72
930 991 6.266168 TCAAGATCTCTCTCTTTCTCACAC 57.734 41.667 0.00 0.00 33.18 3.82
931 992 7.321908 CAATCAAGATCTCTCTCTTTCTCACA 58.678 38.462 0.00 0.00 33.18 3.58
932 993 6.757947 CCAATCAAGATCTCTCTCTTTCTCAC 59.242 42.308 0.00 0.00 33.18 3.51
933 994 6.440010 ACCAATCAAGATCTCTCTCTTTCTCA 59.560 38.462 0.00 0.00 33.18 3.27
934 995 6.877236 ACCAATCAAGATCTCTCTCTTTCTC 58.123 40.000 0.00 0.00 33.18 2.87
935 996 6.872585 ACCAATCAAGATCTCTCTCTTTCT 57.127 37.500 0.00 0.00 33.18 2.52
936 997 6.183360 GCAACCAATCAAGATCTCTCTCTTTC 60.183 42.308 0.00 0.00 33.18 2.62
937 998 5.647225 GCAACCAATCAAGATCTCTCTCTTT 59.353 40.000 0.00 0.00 33.18 2.52
938 999 5.184711 GCAACCAATCAAGATCTCTCTCTT 58.815 41.667 0.00 0.00 35.88 2.85
939 1000 4.224594 TGCAACCAATCAAGATCTCTCTCT 59.775 41.667 0.00 0.00 0.00 3.10
940 1001 4.332268 GTGCAACCAATCAAGATCTCTCTC 59.668 45.833 0.00 0.00 0.00 3.20
941 1002 4.260170 GTGCAACCAATCAAGATCTCTCT 58.740 43.478 0.00 0.00 0.00 3.10
948 1009 1.795872 CGTACGTGCAACCAATCAAGA 59.204 47.619 7.22 0.00 0.00 3.02
1080 1148 1.068250 GCGGAGGTAGTGCAGGATC 59.932 63.158 0.00 0.00 0.00 3.36
1185 1253 5.357032 GGTGATCGGTTGATTGGTTAAGAAT 59.643 40.000 0.00 0.00 34.09 2.40
1223 1295 1.280133 TGAGCAAGCAGAGCAGGTATT 59.720 47.619 0.00 0.00 0.00 1.89
1226 1298 1.302351 GTGAGCAAGCAGAGCAGGT 60.302 57.895 0.00 0.00 0.00 4.00
1595 1780 1.198094 TCGAAGCAAGTGGGATGGGA 61.198 55.000 0.00 0.00 0.00 4.37
1907 2130 3.657634 CTCACTCCCATGGTATCATTCG 58.342 50.000 11.73 0.00 0.00 3.34
1933 2156 6.033196 CAGAGCAAAACAAATTAAGCATCTCG 59.967 38.462 0.00 0.00 0.00 4.04
1953 2177 4.641989 TCCATTCTCCAATAAAAGCAGAGC 59.358 41.667 0.00 0.00 0.00 4.09
1963 2187 4.158394 GCAAAGCTGTTCCATTCTCCAATA 59.842 41.667 0.00 0.00 0.00 1.90
1973 2197 2.192861 CCCACGCAAAGCTGTTCCA 61.193 57.895 0.00 0.00 0.00 3.53
1974 2198 0.887387 TACCCACGCAAAGCTGTTCC 60.887 55.000 0.00 0.00 0.00 3.62
1984 2208 3.014085 GCCACTAGCTACCCACGCA 62.014 63.158 0.00 0.00 38.99 5.24
1988 2212 0.830648 GTCATGCCACTAGCTACCCA 59.169 55.000 0.00 0.00 44.23 4.51
1989 2213 1.123928 AGTCATGCCACTAGCTACCC 58.876 55.000 0.00 0.00 44.23 3.69
1990 2214 2.231215 CAGTCATGCCACTAGCTACC 57.769 55.000 0.00 0.00 44.23 3.18
2010 2262 0.399454 ATGGCTGCCACTAGCTATGG 59.601 55.000 25.99 14.45 42.36 2.74
2105 2382 6.594547 AGCTGCAGACATATGATGATATGAAC 59.405 38.462 20.43 11.12 42.96 3.18
2108 2385 5.232414 CGAGCTGCAGACATATGATGATATG 59.768 44.000 20.43 10.26 44.98 1.78
2113 2390 3.022607 TCGAGCTGCAGACATATGATG 57.977 47.619 20.43 8.87 0.00 3.07
2114 2391 3.257624 TCATCGAGCTGCAGACATATGAT 59.742 43.478 20.43 8.10 0.00 2.45
2144 2429 2.565391 TCTTCTTGTAGATCCGGCACAA 59.435 45.455 0.00 3.57 0.00 3.33
2200 2485 1.153429 GGCCATGTGGTCGTAGTCC 60.153 63.158 0.00 0.00 37.57 3.85
2364 2682 1.809684 GTAGGTGTCCAAGTTCTGCC 58.190 55.000 0.00 0.00 0.00 4.85
2714 3033 5.489249 CAGGTCATATATGCTGCAAGATCT 58.511 41.667 6.36 3.05 34.07 2.75
2721 3040 3.480470 ACAACCAGGTCATATATGCTGC 58.520 45.455 7.92 0.00 0.00 5.25
2731 3050 3.264193 AGATGAAGCATACAACCAGGTCA 59.736 43.478 0.00 0.00 0.00 4.02
2772 3091 8.252964 AGTTAATTTTTAGTCACGAGTCATCC 57.747 34.615 0.00 0.00 0.00 3.51
2779 3098 7.789273 TGTGGAAGTTAATTTTTAGTCACGA 57.211 32.000 0.00 0.00 0.00 4.35
2889 3208 3.262405 TCGGTAAGCCAAGGTAAGTGAAT 59.738 43.478 0.00 0.00 34.09 2.57
3059 3378 4.133820 CGCCAATAAGAACATACCCATGA 58.866 43.478 0.00 0.00 35.96 3.07
3096 3415 0.251608 CCCGGGGAGTGTCCATTTTT 60.252 55.000 14.71 0.00 38.64 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.