Multiple sequence alignment - TraesCS2B01G118700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G118700 chr2B 100.000 2826 0 0 971 3796 84816220 84819045 0.000000e+00 5219.0
1 TraesCS2B01G118700 chr2B 100.000 736 0 0 1 736 84815250 84815985 0.000000e+00 1360.0
2 TraesCS2B01G118700 chr2B 94.286 245 13 1 2467 2710 84970364 84970608 1.290000e-99 374.0
3 TraesCS2B01G118700 chr2B 92.537 201 15 0 2487 2687 84976999 84977199 4.800000e-74 289.0
4 TraesCS2B01G118700 chr2B 90.196 204 20 0 1426 1629 84817736 84817939 2.250000e-67 267.0
5 TraesCS2B01G118700 chr2B 92.308 117 9 0 3680 3796 626968187 626968303 2.350000e-37 167.0
6 TraesCS2B01G118700 chr2B 91.597 119 8 2 3679 3796 412551348 412551465 3.030000e-36 163.0
7 TraesCS2B01G118700 chr2A 91.260 2151 119 40 1001 3098 54819089 54816955 0.000000e+00 2867.0
8 TraesCS2B01G118700 chr2A 92.140 458 31 1 3106 3558 54816710 54816253 3.200000e-180 641.0
9 TraesCS2B01G118700 chr2A 93.510 339 16 4 380 716 54819449 54819115 2.040000e-137 499.0
10 TraesCS2B01G118700 chr2A 93.443 244 15 1 2467 2710 54706330 54706088 1.000000e-95 361.0
11 TraesCS2B01G118700 chr2A 91.667 204 17 0 2487 2690 54702765 54702562 2.230000e-72 283.0
12 TraesCS2B01G118700 chr2A 89.202 213 23 0 1426 1638 54817572 54817360 2.250000e-67 267.0
13 TraesCS2B01G118700 chr2A 88.372 215 25 0 1428 1642 54707051 54706837 3.760000e-65 259.0
14 TraesCS2B01G118700 chr2D 92.010 1239 61 24 1001 2222 54104746 54103529 0.000000e+00 1705.0
15 TraesCS2B01G118700 chr2D 87.248 941 81 22 2259 3186 54103528 54102614 0.000000e+00 1037.0
16 TraesCS2B01G118700 chr2D 89.512 410 13 7 330 716 54105174 54104772 3.410000e-135 492.0
17 TraesCS2B01G118700 chr2D 94.142 239 14 0 2467 2705 54077271 54077033 7.750000e-97 364.0
18 TraesCS2B01G118700 chr2D 91.176 204 18 0 2487 2690 54066768 54066565 1.040000e-70 278.0
19 TraesCS2B01G118700 chr2D 89.202 213 23 0 1426 1638 54103303 54103091 2.250000e-67 267.0
20 TraesCS2B01G118700 chr2D 89.202 213 23 0 2487 2699 54104324 54104112 2.250000e-67 267.0
21 TraesCS2B01G118700 chr2D 88.837 215 24 0 1428 1642 54077997 54077783 8.090000e-67 265.0
22 TraesCS2B01G118700 chr2D 87.634 186 8 7 3319 3491 54102455 54102272 6.430000e-48 202.0
23 TraesCS2B01G118700 chr1B 83.115 610 46 20 2470 3049 589982935 589982353 1.570000e-138 503.0
24 TraesCS2B01G118700 chr1B 96.721 122 4 0 3557 3678 409611044 409611165 1.790000e-48 204.0
25 TraesCS2B01G118700 chr1B 95.902 122 5 0 3557 3678 626133825 626133946 8.320000e-47 198.0
26 TraesCS2B01G118700 chr1B 93.966 116 7 0 3681 3796 654428926 654428811 3.900000e-40 176.0
27 TraesCS2B01G118700 chr1A 86.122 490 38 16 2450 2925 533328743 533328270 5.660000e-138 501.0
28 TraesCS2B01G118700 chr1A 92.908 141 10 0 2070 2210 533398891 533398751 4.970000e-49 206.0
29 TraesCS2B01G118700 chr1A 95.902 122 5 0 3557 3678 393775134 393775013 8.320000e-47 198.0
30 TraesCS2B01G118700 chr4D 87.931 232 28 0 1411 1642 305054669 305054900 1.340000e-69 274.0
31 TraesCS2B01G118700 chr4D 80.800 125 24 0 1285 1409 305054376 305054500 8.680000e-17 99.0
32 TraesCS2B01G118700 chr4B 87.069 232 30 0 1411 1642 380720447 380720678 2.910000e-66 263.0
33 TraesCS2B01G118700 chr4B 86.498 237 32 0 2469 2705 380721102 380721338 1.050000e-65 261.0
34 TraesCS2B01G118700 chr4B 80.800 125 24 0 1285 1409 380720156 380720280 8.680000e-17 99.0
35 TraesCS2B01G118700 chr4A 87.336 229 29 0 1414 1642 173932836 173932608 2.910000e-66 263.0
36 TraesCS2B01G118700 chr4A 86.076 237 33 0 2469 2705 173932190 173931954 4.870000e-64 255.0
37 TraesCS2B01G118700 chr4A 93.130 131 8 1 3557 3687 554921213 554921342 1.390000e-44 191.0
38 TraesCS2B01G118700 chr7B 84.475 219 28 5 1423 1638 730876070 730876285 1.070000e-50 211.0
39 TraesCS2B01G118700 chr7B 83.486 218 32 4 2487 2702 730876073 730876288 2.310000e-47 200.0
40 TraesCS2B01G118700 chr7B 93.130 131 8 1 3557 3687 724574614 724574485 1.390000e-44 191.0
41 TraesCS2B01G118700 chr7B 83.168 202 30 4 2491 2690 686529941 686530140 8.380000e-42 182.0
42 TraesCS2B01G118700 chr7B 90.244 123 10 2 3675 3796 636919053 636919174 3.920000e-35 159.0
43 TraesCS2B01G118700 chr7B 100.000 29 0 0 1346 1374 678568150 678568122 2.000000e-03 54.7
44 TraesCS2B01G118700 chr6B 94.656 131 6 1 3557 3687 558656075 558656204 6.430000e-48 202.0
45 TraesCS2B01G118700 chrUn 95.902 122 5 0 3557 3678 239743783 239743904 8.320000e-47 198.0
46 TraesCS2B01G118700 chr7D 95.902 122 5 0 3557 3678 29047532 29047653 8.320000e-47 198.0
47 TraesCS2B01G118700 chr3A 95.902 122 5 0 3557 3678 535225526 535225647 8.320000e-47 198.0
48 TraesCS2B01G118700 chr3A 89.600 125 11 2 3674 3796 640229065 640229189 1.410000e-34 158.0
49 TraesCS2B01G118700 chr3B 90.909 132 11 1 2070 2200 5401119 5401250 3.900000e-40 176.0
50 TraesCS2B01G118700 chr3B 91.057 123 10 1 3674 3795 667580883 667581005 8.440000e-37 165.0
51 TraesCS2B01G118700 chr3D 81.773 203 37 0 2503 2705 39207861 39207659 1.810000e-38 171.0
52 TraesCS2B01G118700 chr3D 91.453 117 10 0 3680 3796 576200852 576200968 1.090000e-35 161.0
53 TraesCS2B01G118700 chr3D 80.093 216 41 2 2503 2717 39301162 39300948 3.920000e-35 159.0
54 TraesCS2B01G118700 chr5D 92.241 116 9 0 3681 3796 1638042 1637927 8.440000e-37 165.0
55 TraesCS2B01G118700 chr5B 91.453 117 10 0 3680 3796 14608734 14608850 1.090000e-35 161.0
56 TraesCS2B01G118700 chr1D 86.667 75 8 2 3317 3390 26148547 26148620 8.740000e-12 82.4
57 TraesCS2B01G118700 chr1D 84.416 77 12 0 3415 3491 26154272 26154348 4.070000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G118700 chr2B 84815250 84819045 3795 False 2282.000000 5219 96.732000 1 3796 3 chr2B.!!$F5 3795
1 TraesCS2B01G118700 chr2A 54816253 54819449 3196 True 1068.500000 2867 91.528000 380 3558 4 chr2A.!!$R2 3178
2 TraesCS2B01G118700 chr2A 54702562 54707051 4489 True 301.000000 361 91.160667 1428 2710 3 chr2A.!!$R1 1282
3 TraesCS2B01G118700 chr2D 54102272 54105174 2902 True 661.666667 1705 89.134667 330 3491 6 chr2D.!!$R3 3161
4 TraesCS2B01G118700 chr2D 54077033 54077997 964 True 314.500000 364 91.489500 1428 2705 2 chr2D.!!$R2 1277
5 TraesCS2B01G118700 chr1B 589982353 589982935 582 True 503.000000 503 83.115000 2470 3049 1 chr1B.!!$R1 579
6 TraesCS2B01G118700 chr4B 380720156 380721338 1182 False 207.666667 263 84.789000 1285 2705 3 chr4B.!!$F1 1420
7 TraesCS2B01G118700 chr4A 173931954 173932836 882 True 259.000000 263 86.706000 1414 2705 2 chr4A.!!$R1 1291

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
276 277 0.174845 CGGACGGGCATCTTTCTGTA 59.825 55.0 0.0 0.0 0.00 2.74 F
719 743 0.320247 CAAGGAACACTCGCTCAGCT 60.320 55.0 0.0 0.0 0.00 4.24 F
1282 1336 0.108396 ACTTTTGCATGGGTTTGGGC 59.892 50.0 0.0 0.0 0.00 5.36 F
2178 2545 0.323178 AAGCCATCAAGCACTCCCTG 60.323 55.0 0.0 0.0 34.23 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1186 1219 0.244450 CCGAGTTTACGTGCCTGGTA 59.756 55.0 0.0 0.0 0.00 3.25 R
2312 2681 0.251297 CCCCTGCATTGACCAACTCA 60.251 55.0 0.0 0.0 0.00 3.41 R
2393 2771 0.397941 CCAGAGCAGGTGGAGAACAA 59.602 55.0 0.0 0.0 37.23 2.83 R
3738 6916 0.033642 GCCTTATCAGTAGGGTCGGC 59.966 60.0 0.0 0.0 33.19 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.380084 AATCTACGTGGCATCGTTGT 57.620 45.000 17.48 3.17 43.80 3.32
22 23 1.640428 ATCTACGTGGCATCGTTGTG 58.360 50.000 17.48 10.28 43.80 3.33
23 24 0.389296 TCTACGTGGCATCGTTGTGG 60.389 55.000 17.48 8.44 43.80 4.17
24 25 1.358725 CTACGTGGCATCGTTGTGGG 61.359 60.000 17.48 3.88 43.80 4.61
25 26 4.101790 CGTGGCATCGTTGTGGGC 62.102 66.667 0.00 0.00 0.00 5.36
26 27 3.747976 GTGGCATCGTTGTGGGCC 61.748 66.667 0.00 0.00 46.58 5.80
30 31 3.803082 CATCGTTGTGGGCCGCAG 61.803 66.667 20.55 9.99 0.00 5.18
31 32 4.015406 ATCGTTGTGGGCCGCAGA 62.015 61.111 20.55 15.36 0.00 4.26
32 33 3.545124 ATCGTTGTGGGCCGCAGAA 62.545 57.895 20.55 10.05 0.00 3.02
33 34 2.819984 ATCGTTGTGGGCCGCAGAAT 62.820 55.000 20.55 11.90 0.00 2.40
34 35 2.877691 GTTGTGGGCCGCAGAATC 59.122 61.111 20.55 8.64 0.00 2.52
35 36 1.675641 GTTGTGGGCCGCAGAATCT 60.676 57.895 20.55 0.00 0.00 2.40
36 37 1.377202 TTGTGGGCCGCAGAATCTC 60.377 57.895 20.55 0.00 0.00 2.75
37 38 2.123248 TTGTGGGCCGCAGAATCTCA 62.123 55.000 20.55 0.00 0.00 3.27
38 39 1.377202 GTGGGCCGCAGAATCTCAA 60.377 57.895 13.30 0.00 0.00 3.02
39 40 1.078214 TGGGCCGCAGAATCTCAAG 60.078 57.895 0.00 0.00 0.00 3.02
40 41 1.221840 GGGCCGCAGAATCTCAAGA 59.778 57.895 0.00 0.00 0.00 3.02
41 42 1.092345 GGGCCGCAGAATCTCAAGAC 61.092 60.000 0.00 0.00 0.00 3.01
42 43 1.092345 GGCCGCAGAATCTCAAGACC 61.092 60.000 0.00 0.00 0.00 3.85
43 44 1.092345 GCCGCAGAATCTCAAGACCC 61.092 60.000 0.00 0.00 0.00 4.46
44 45 0.539051 CCGCAGAATCTCAAGACCCT 59.461 55.000 0.00 0.00 0.00 4.34
45 46 1.757118 CCGCAGAATCTCAAGACCCTA 59.243 52.381 0.00 0.00 0.00 3.53
46 47 2.482142 CCGCAGAATCTCAAGACCCTAC 60.482 54.545 0.00 0.00 0.00 3.18
47 48 2.482142 CGCAGAATCTCAAGACCCTACC 60.482 54.545 0.00 0.00 0.00 3.18
48 49 2.501723 GCAGAATCTCAAGACCCTACCA 59.498 50.000 0.00 0.00 0.00 3.25
49 50 3.431486 GCAGAATCTCAAGACCCTACCAG 60.431 52.174 0.00 0.00 0.00 4.00
50 51 2.769095 AGAATCTCAAGACCCTACCAGC 59.231 50.000 0.00 0.00 0.00 4.85
51 52 2.254152 ATCTCAAGACCCTACCAGCA 57.746 50.000 0.00 0.00 0.00 4.41
52 53 1.267121 TCTCAAGACCCTACCAGCAC 58.733 55.000 0.00 0.00 0.00 4.40
53 54 0.976641 CTCAAGACCCTACCAGCACA 59.023 55.000 0.00 0.00 0.00 4.57
54 55 1.556911 CTCAAGACCCTACCAGCACAT 59.443 52.381 0.00 0.00 0.00 3.21
55 56 1.278985 TCAAGACCCTACCAGCACATG 59.721 52.381 0.00 0.00 0.00 3.21
56 57 1.278985 CAAGACCCTACCAGCACATGA 59.721 52.381 0.00 0.00 0.00 3.07
57 58 1.885049 AGACCCTACCAGCACATGAT 58.115 50.000 0.00 0.00 0.00 2.45
58 59 2.200081 AGACCCTACCAGCACATGATT 58.800 47.619 0.00 0.00 0.00 2.57
59 60 3.384168 AGACCCTACCAGCACATGATTA 58.616 45.455 0.00 0.00 0.00 1.75
60 61 3.780294 AGACCCTACCAGCACATGATTAA 59.220 43.478 0.00 0.00 0.00 1.40
61 62 4.227300 AGACCCTACCAGCACATGATTAAA 59.773 41.667 0.00 0.00 0.00 1.52
62 63 4.929479 ACCCTACCAGCACATGATTAAAA 58.071 39.130 0.00 0.00 0.00 1.52
63 64 5.329399 ACCCTACCAGCACATGATTAAAAA 58.671 37.500 0.00 0.00 0.00 1.94
64 65 5.418840 ACCCTACCAGCACATGATTAAAAAG 59.581 40.000 0.00 0.00 0.00 2.27
65 66 5.652014 CCCTACCAGCACATGATTAAAAAGA 59.348 40.000 0.00 0.00 0.00 2.52
66 67 6.183360 CCCTACCAGCACATGATTAAAAAGAG 60.183 42.308 0.00 0.00 0.00 2.85
67 68 6.599244 CCTACCAGCACATGATTAAAAAGAGA 59.401 38.462 0.00 0.00 0.00 3.10
68 69 7.284034 CCTACCAGCACATGATTAAAAAGAGAT 59.716 37.037 0.00 0.00 0.00 2.75
69 70 6.860080 ACCAGCACATGATTAAAAAGAGATG 58.140 36.000 0.00 0.00 0.00 2.90
70 71 5.747197 CCAGCACATGATTAAAAAGAGATGC 59.253 40.000 0.00 0.00 0.00 3.91
71 72 6.327154 CAGCACATGATTAAAAAGAGATGCA 58.673 36.000 0.00 0.00 0.00 3.96
72 73 6.472486 CAGCACATGATTAAAAAGAGATGCAG 59.528 38.462 0.00 0.00 0.00 4.41
73 74 6.376299 AGCACATGATTAAAAAGAGATGCAGA 59.624 34.615 0.00 0.00 0.00 4.26
74 75 7.068348 AGCACATGATTAAAAAGAGATGCAGAT 59.932 33.333 0.00 0.00 0.00 2.90
75 76 7.167635 GCACATGATTAAAAAGAGATGCAGATG 59.832 37.037 0.00 0.00 0.00 2.90
76 77 8.403236 CACATGATTAAAAAGAGATGCAGATGA 58.597 33.333 0.00 0.00 0.00 2.92
77 78 8.404000 ACATGATTAAAAAGAGATGCAGATGAC 58.596 33.333 0.00 0.00 0.00 3.06
78 79 7.926674 TGATTAAAAAGAGATGCAGATGACA 57.073 32.000 0.00 0.00 0.00 3.58
79 80 8.339344 TGATTAAAAAGAGATGCAGATGACAA 57.661 30.769 0.00 0.00 0.00 3.18
80 81 8.795513 TGATTAAAAAGAGATGCAGATGACAAA 58.204 29.630 0.00 0.00 0.00 2.83
81 82 9.286946 GATTAAAAAGAGATGCAGATGACAAAG 57.713 33.333 0.00 0.00 0.00 2.77
82 83 6.645790 AAAAAGAGATGCAGATGACAAAGT 57.354 33.333 0.00 0.00 0.00 2.66
83 84 5.876612 AAAGAGATGCAGATGACAAAGTC 57.123 39.130 0.00 0.00 0.00 3.01
84 85 4.822685 AGAGATGCAGATGACAAAGTCT 57.177 40.909 0.00 0.00 33.15 3.24
85 86 4.505808 AGAGATGCAGATGACAAAGTCTG 58.494 43.478 0.00 0.91 43.62 3.51
86 87 4.222366 AGAGATGCAGATGACAAAGTCTGA 59.778 41.667 8.43 0.00 43.50 3.27
87 88 4.903054 AGATGCAGATGACAAAGTCTGAA 58.097 39.130 8.43 0.00 43.50 3.02
88 89 4.936411 AGATGCAGATGACAAAGTCTGAAG 59.064 41.667 8.43 0.00 43.50 3.02
89 90 4.077300 TGCAGATGACAAAGTCTGAAGT 57.923 40.909 8.43 0.00 43.50 3.01
90 91 3.811497 TGCAGATGACAAAGTCTGAAGTG 59.189 43.478 8.43 0.00 43.50 3.16
91 92 4.060900 GCAGATGACAAAGTCTGAAGTGA 58.939 43.478 8.43 0.00 43.50 3.41
92 93 4.152045 GCAGATGACAAAGTCTGAAGTGAG 59.848 45.833 8.43 0.00 43.50 3.51
93 94 4.689812 CAGATGACAAAGTCTGAAGTGAGG 59.310 45.833 0.00 0.00 43.50 3.86
94 95 3.475566 TGACAAAGTCTGAAGTGAGGG 57.524 47.619 0.00 0.00 33.15 4.30
95 96 3.038280 TGACAAAGTCTGAAGTGAGGGA 58.962 45.455 0.00 0.00 33.15 4.20
96 97 3.070159 TGACAAAGTCTGAAGTGAGGGAG 59.930 47.826 0.00 0.00 33.15 4.30
97 98 3.309296 ACAAAGTCTGAAGTGAGGGAGA 58.691 45.455 0.00 0.00 0.00 3.71
98 99 3.323403 ACAAAGTCTGAAGTGAGGGAGAG 59.677 47.826 0.00 0.00 0.00 3.20
99 100 3.534357 AAGTCTGAAGTGAGGGAGAGA 57.466 47.619 0.00 0.00 0.00 3.10
100 101 2.802719 AGTCTGAAGTGAGGGAGAGAC 58.197 52.381 0.00 0.00 0.00 3.36
101 102 1.470890 GTCTGAAGTGAGGGAGAGACG 59.529 57.143 0.00 0.00 0.00 4.18
102 103 0.814457 CTGAAGTGAGGGAGAGACGG 59.186 60.000 0.00 0.00 0.00 4.79
103 104 0.404426 TGAAGTGAGGGAGAGACGGA 59.596 55.000 0.00 0.00 0.00 4.69
104 105 1.006043 TGAAGTGAGGGAGAGACGGAT 59.994 52.381 0.00 0.00 0.00 4.18
105 106 2.241430 TGAAGTGAGGGAGAGACGGATA 59.759 50.000 0.00 0.00 0.00 2.59
106 107 3.288964 GAAGTGAGGGAGAGACGGATAA 58.711 50.000 0.00 0.00 0.00 1.75
107 108 3.603965 AGTGAGGGAGAGACGGATAAT 57.396 47.619 0.00 0.00 0.00 1.28
108 109 4.726035 AGTGAGGGAGAGACGGATAATA 57.274 45.455 0.00 0.00 0.00 0.98
109 110 5.263872 AGTGAGGGAGAGACGGATAATAT 57.736 43.478 0.00 0.00 0.00 1.28
110 111 6.390048 AGTGAGGGAGAGACGGATAATATA 57.610 41.667 0.00 0.00 0.00 0.86
111 112 6.975949 AGTGAGGGAGAGACGGATAATATAT 58.024 40.000 0.00 0.00 0.00 0.86
112 113 7.415086 AGTGAGGGAGAGACGGATAATATATT 58.585 38.462 2.97 2.97 0.00 1.28
113 114 7.896496 AGTGAGGGAGAGACGGATAATATATTT 59.104 37.037 2.68 0.00 0.00 1.40
114 115 8.532819 GTGAGGGAGAGACGGATAATATATTTT 58.467 37.037 2.68 0.00 0.00 1.82
115 116 9.763837 TGAGGGAGAGACGGATAATATATTTTA 57.236 33.333 2.68 0.00 0.00 1.52
141 142 8.824756 ACATCTCCTTAGTTACACTCTATTCA 57.175 34.615 0.00 0.00 0.00 2.57
142 143 8.908903 ACATCTCCTTAGTTACACTCTATTCAG 58.091 37.037 0.00 0.00 0.00 3.02
143 144 8.908903 CATCTCCTTAGTTACACTCTATTCAGT 58.091 37.037 0.00 0.00 0.00 3.41
144 145 8.508883 TCTCCTTAGTTACACTCTATTCAGTC 57.491 38.462 0.00 0.00 0.00 3.51
145 146 8.107729 TCTCCTTAGTTACACTCTATTCAGTCA 58.892 37.037 0.00 0.00 0.00 3.41
146 147 8.282455 TCCTTAGTTACACTCTATTCAGTCAG 57.718 38.462 0.00 0.00 0.00 3.51
147 148 7.339721 TCCTTAGTTACACTCTATTCAGTCAGG 59.660 40.741 0.00 0.00 0.00 3.86
148 149 7.122948 CCTTAGTTACACTCTATTCAGTCAGGT 59.877 40.741 0.00 0.00 0.00 4.00
149 150 6.518208 AGTTACACTCTATTCAGTCAGGTC 57.482 41.667 0.00 0.00 0.00 3.85
150 151 5.419471 AGTTACACTCTATTCAGTCAGGTCC 59.581 44.000 0.00 0.00 0.00 4.46
151 152 4.054359 ACACTCTATTCAGTCAGGTCCT 57.946 45.455 0.00 0.00 0.00 3.85
152 153 4.421131 ACACTCTATTCAGTCAGGTCCTT 58.579 43.478 0.00 0.00 0.00 3.36
153 154 4.841246 ACACTCTATTCAGTCAGGTCCTTT 59.159 41.667 0.00 0.00 0.00 3.11
154 155 6.017192 ACACTCTATTCAGTCAGGTCCTTTA 58.983 40.000 0.00 0.00 0.00 1.85
155 156 6.670027 ACACTCTATTCAGTCAGGTCCTTTAT 59.330 38.462 0.00 0.00 0.00 1.40
156 157 7.181125 ACACTCTATTCAGTCAGGTCCTTTATT 59.819 37.037 0.00 0.00 0.00 1.40
157 158 8.043710 CACTCTATTCAGTCAGGTCCTTTATTT 58.956 37.037 0.00 0.00 0.00 1.40
158 159 8.606830 ACTCTATTCAGTCAGGTCCTTTATTTT 58.393 33.333 0.00 0.00 0.00 1.82
159 160 9.103861 CTCTATTCAGTCAGGTCCTTTATTTTC 57.896 37.037 0.00 0.00 0.00 2.29
160 161 8.602424 TCTATTCAGTCAGGTCCTTTATTTTCA 58.398 33.333 0.00 0.00 0.00 2.69
161 162 9.401058 CTATTCAGTCAGGTCCTTTATTTTCAT 57.599 33.333 0.00 0.00 0.00 2.57
162 163 7.452880 TTCAGTCAGGTCCTTTATTTTCATG 57.547 36.000 0.00 0.00 0.00 3.07
163 164 5.415701 TCAGTCAGGTCCTTTATTTTCATGC 59.584 40.000 0.00 0.00 0.00 4.06
164 165 5.183713 CAGTCAGGTCCTTTATTTTCATGCA 59.816 40.000 0.00 0.00 0.00 3.96
165 166 5.774690 AGTCAGGTCCTTTATTTTCATGCAA 59.225 36.000 0.00 0.00 0.00 4.08
166 167 5.863935 GTCAGGTCCTTTATTTTCATGCAAC 59.136 40.000 0.00 0.00 0.00 4.17
167 168 5.047377 TCAGGTCCTTTATTTTCATGCAACC 60.047 40.000 0.00 0.00 0.00 3.77
168 169 5.047092 CAGGTCCTTTATTTTCATGCAACCT 60.047 40.000 0.00 0.00 33.81 3.50
169 170 5.185828 AGGTCCTTTATTTTCATGCAACCTC 59.814 40.000 0.00 0.00 0.00 3.85
170 171 5.185828 GGTCCTTTATTTTCATGCAACCTCT 59.814 40.000 0.00 0.00 0.00 3.69
171 172 6.377146 GGTCCTTTATTTTCATGCAACCTCTA 59.623 38.462 0.00 0.00 0.00 2.43
172 173 7.093945 GGTCCTTTATTTTCATGCAACCTCTAA 60.094 37.037 0.00 0.00 0.00 2.10
173 174 8.303876 GTCCTTTATTTTCATGCAACCTCTAAA 58.696 33.333 0.00 0.00 0.00 1.85
174 175 8.865090 TCCTTTATTTTCATGCAACCTCTAAAA 58.135 29.630 0.00 0.00 0.00 1.52
175 176 9.487790 CCTTTATTTTCATGCAACCTCTAAAAA 57.512 29.630 0.00 0.00 0.00 1.94
178 179 7.816945 ATTTTCATGCAACCTCTAAAAATCG 57.183 32.000 0.00 0.00 0.00 3.34
179 180 5.957842 TTCATGCAACCTCTAAAAATCGT 57.042 34.783 0.00 0.00 0.00 3.73
180 181 5.545658 TCATGCAACCTCTAAAAATCGTC 57.454 39.130 0.00 0.00 0.00 4.20
181 182 4.394920 TCATGCAACCTCTAAAAATCGTCC 59.605 41.667 0.00 0.00 0.00 4.79
182 183 4.015872 TGCAACCTCTAAAAATCGTCCT 57.984 40.909 0.00 0.00 0.00 3.85
183 184 4.394729 TGCAACCTCTAAAAATCGTCCTT 58.605 39.130 0.00 0.00 0.00 3.36
184 185 5.553123 TGCAACCTCTAAAAATCGTCCTTA 58.447 37.500 0.00 0.00 0.00 2.69
185 186 5.642063 TGCAACCTCTAAAAATCGTCCTTAG 59.358 40.000 0.00 0.00 0.00 2.18
186 187 5.447413 GCAACCTCTAAAAATCGTCCTTAGC 60.447 44.000 0.00 0.00 0.00 3.09
187 188 5.678955 ACCTCTAAAAATCGTCCTTAGCT 57.321 39.130 0.00 0.00 0.00 3.32
188 189 6.786967 ACCTCTAAAAATCGTCCTTAGCTA 57.213 37.500 0.00 0.00 0.00 3.32
189 190 6.807789 ACCTCTAAAAATCGTCCTTAGCTAG 58.192 40.000 0.00 0.00 0.00 3.42
190 191 6.606395 ACCTCTAAAAATCGTCCTTAGCTAGA 59.394 38.462 0.00 0.00 0.00 2.43
191 192 6.919115 CCTCTAAAAATCGTCCTTAGCTAGAC 59.081 42.308 0.00 3.58 0.00 2.59
192 193 7.201839 CCTCTAAAAATCGTCCTTAGCTAGACT 60.202 40.741 10.43 0.00 0.00 3.24
193 194 7.705214 TCTAAAAATCGTCCTTAGCTAGACTC 58.295 38.462 10.43 0.00 0.00 3.36
194 195 6.532988 AAAAATCGTCCTTAGCTAGACTCT 57.467 37.500 10.43 0.00 0.00 3.24
195 196 7.642082 AAAAATCGTCCTTAGCTAGACTCTA 57.358 36.000 10.43 0.00 0.00 2.43
196 197 7.826918 AAAATCGTCCTTAGCTAGACTCTAT 57.173 36.000 10.43 1.16 0.00 1.98
197 198 7.826918 AAATCGTCCTTAGCTAGACTCTATT 57.173 36.000 10.43 5.85 0.00 1.73
198 199 7.443259 AATCGTCCTTAGCTAGACTCTATTC 57.557 40.000 10.43 0.00 0.00 1.75
199 200 5.926663 TCGTCCTTAGCTAGACTCTATTCA 58.073 41.667 10.43 0.00 0.00 2.57
200 201 5.992829 TCGTCCTTAGCTAGACTCTATTCAG 59.007 44.000 10.43 0.00 0.00 3.02
201 202 5.761234 CGTCCTTAGCTAGACTCTATTCAGT 59.239 44.000 10.43 0.00 0.00 3.41
202 203 6.073440 CGTCCTTAGCTAGACTCTATTCAGTC 60.073 46.154 10.43 0.00 42.91 3.51
203 204 6.768861 GTCCTTAGCTAGACTCTATTCAGTCA 59.231 42.308 6.00 0.00 44.73 3.41
204 205 6.995686 TCCTTAGCTAGACTCTATTCAGTCAG 59.004 42.308 0.00 0.96 44.73 3.51
205 206 6.206634 CCTTAGCTAGACTCTATTCAGTCAGG 59.793 46.154 0.00 0.00 44.73 3.86
206 207 5.124036 AGCTAGACTCTATTCAGTCAGGT 57.876 43.478 0.00 2.33 44.73 4.00
207 208 5.515106 AGCTAGACTCTATTCAGTCAGGTT 58.485 41.667 0.00 0.00 44.73 3.50
208 209 5.592688 AGCTAGACTCTATTCAGTCAGGTTC 59.407 44.000 0.00 0.00 44.73 3.62
209 210 4.974368 AGACTCTATTCAGTCAGGTTCG 57.026 45.455 3.56 0.00 44.73 3.95
210 211 3.129638 AGACTCTATTCAGTCAGGTTCGC 59.870 47.826 3.56 0.00 44.73 4.70
211 212 2.166664 ACTCTATTCAGTCAGGTTCGCC 59.833 50.000 0.00 0.00 37.60 5.54
222 223 3.883997 GGTTCGCCTTTTTCATGCA 57.116 47.368 0.00 0.00 0.00 3.96
223 224 2.147436 GGTTCGCCTTTTTCATGCAA 57.853 45.000 0.00 0.00 0.00 4.08
224 225 1.792367 GGTTCGCCTTTTTCATGCAAC 59.208 47.619 0.00 0.00 0.00 4.17
225 226 2.545742 GGTTCGCCTTTTTCATGCAACT 60.546 45.455 0.00 0.00 0.00 3.16
226 227 3.123050 GTTCGCCTTTTTCATGCAACTT 58.877 40.909 0.00 0.00 0.00 2.66
227 228 3.011949 TCGCCTTTTTCATGCAACTTC 57.988 42.857 0.00 0.00 0.00 3.01
228 229 2.622942 TCGCCTTTTTCATGCAACTTCT 59.377 40.909 0.00 0.00 0.00 2.85
229 230 3.818210 TCGCCTTTTTCATGCAACTTCTA 59.182 39.130 0.00 0.00 0.00 2.10
230 231 4.277174 TCGCCTTTTTCATGCAACTTCTAA 59.723 37.500 0.00 0.00 0.00 2.10
231 232 4.981674 CGCCTTTTTCATGCAACTTCTAAA 59.018 37.500 0.00 0.00 0.00 1.85
232 233 5.461737 CGCCTTTTTCATGCAACTTCTAAAA 59.538 36.000 0.00 0.00 0.00 1.52
233 234 6.146021 CGCCTTTTTCATGCAACTTCTAAAAT 59.854 34.615 0.00 0.00 0.00 1.82
234 235 7.307337 CGCCTTTTTCATGCAACTTCTAAAATT 60.307 33.333 0.00 0.00 0.00 1.82
235 236 8.011673 GCCTTTTTCATGCAACTTCTAAAATTC 58.988 33.333 0.00 0.00 0.00 2.17
236 237 8.216453 CCTTTTTCATGCAACTTCTAAAATTCG 58.784 33.333 0.00 0.00 0.00 3.34
237 238 7.636259 TTTTCATGCAACTTCTAAAATTCGG 57.364 32.000 0.00 0.00 0.00 4.30
238 239 5.957842 TCATGCAACTTCTAAAATTCGGT 57.042 34.783 0.00 0.00 0.00 4.69
239 240 5.698832 TCATGCAACTTCTAAAATTCGGTG 58.301 37.500 0.00 0.00 0.00 4.94
240 241 3.896122 TGCAACTTCTAAAATTCGGTGC 58.104 40.909 0.00 0.00 0.00 5.01
241 242 3.242518 GCAACTTCTAAAATTCGGTGCC 58.757 45.455 0.00 0.00 0.00 5.01
242 243 3.488489 CAACTTCTAAAATTCGGTGCCG 58.512 45.455 3.94 3.94 41.35 5.69
243 244 2.081462 ACTTCTAAAATTCGGTGCCGG 58.919 47.619 10.94 0.00 40.25 6.13
244 245 2.081462 CTTCTAAAATTCGGTGCCGGT 58.919 47.619 10.94 0.00 40.25 5.28
245 246 3.264104 CTTCTAAAATTCGGTGCCGGTA 58.736 45.455 10.94 0.00 40.25 4.02
246 247 3.331478 TCTAAAATTCGGTGCCGGTAA 57.669 42.857 10.94 0.00 40.25 2.85
247 248 3.002102 TCTAAAATTCGGTGCCGGTAAC 58.998 45.455 10.94 0.00 40.25 2.50
248 249 0.883153 AAAATTCGGTGCCGGTAACC 59.117 50.000 16.21 16.21 40.25 2.85
249 250 0.250814 AAATTCGGTGCCGGTAACCA 60.251 50.000 23.19 9.38 37.57 3.67
250 251 0.675522 AATTCGGTGCCGGTAACCAG 60.676 55.000 23.19 16.85 37.57 4.00
251 252 3.887335 TTCGGTGCCGGTAACCAGC 62.887 63.158 23.19 12.72 37.57 4.85
252 253 4.690719 CGGTGCCGGTAACCAGCA 62.691 66.667 23.19 2.94 39.82 4.41
253 254 2.281900 GGTGCCGGTAACCAGCAA 60.282 61.111 20.02 0.00 43.26 3.91
254 255 1.677633 GGTGCCGGTAACCAGCAAT 60.678 57.895 20.02 0.00 43.26 3.56
255 256 1.506262 GTGCCGGTAACCAGCAATG 59.494 57.895 1.90 0.00 43.26 2.82
256 257 2.339556 TGCCGGTAACCAGCAATGC 61.340 57.895 1.90 0.00 39.23 3.56
257 258 3.063743 GCCGGTAACCAGCAATGCC 62.064 63.158 1.90 0.00 32.73 4.40
258 259 2.760159 CCGGTAACCAGCAATGCCG 61.760 63.158 0.00 0.00 43.32 5.69
259 260 2.760159 CGGTAACCAGCAATGCCGG 61.760 63.158 5.85 5.85 40.53 6.13
260 261 1.377987 GGTAACCAGCAATGCCGGA 60.378 57.895 15.29 0.00 0.00 5.14
261 262 1.654023 GGTAACCAGCAATGCCGGAC 61.654 60.000 15.29 2.54 0.00 4.79
262 263 1.743623 TAACCAGCAATGCCGGACG 60.744 57.895 15.29 0.00 0.00 4.79
273 274 2.584608 CCGGACGGGCATCTTTCT 59.415 61.111 0.00 0.00 0.00 2.52
274 275 1.815421 CCGGACGGGCATCTTTCTG 60.815 63.158 0.00 0.00 0.00 3.02
275 276 1.079127 CGGACGGGCATCTTTCTGT 60.079 57.895 0.00 0.00 0.00 3.41
276 277 0.174845 CGGACGGGCATCTTTCTGTA 59.825 55.000 0.00 0.00 0.00 2.74
277 278 1.653151 GGACGGGCATCTTTCTGTAC 58.347 55.000 0.00 0.00 0.00 2.90
278 279 1.207329 GGACGGGCATCTTTCTGTACT 59.793 52.381 0.00 0.00 0.00 2.73
279 280 2.271800 GACGGGCATCTTTCTGTACTG 58.728 52.381 0.00 0.00 0.00 2.74
280 281 1.899814 ACGGGCATCTTTCTGTACTGA 59.100 47.619 0.00 0.00 0.00 3.41
281 282 2.271800 CGGGCATCTTTCTGTACTGAC 58.728 52.381 1.37 0.00 0.00 3.51
282 283 2.353704 CGGGCATCTTTCTGTACTGACA 60.354 50.000 1.37 0.00 0.00 3.58
283 284 3.679917 CGGGCATCTTTCTGTACTGACAT 60.680 47.826 1.37 0.00 34.24 3.06
284 285 3.624861 GGGCATCTTTCTGTACTGACATG 59.375 47.826 1.37 6.56 34.24 3.21
285 286 3.064545 GGCATCTTTCTGTACTGACATGC 59.935 47.826 21.01 21.01 34.68 4.06
286 287 3.686241 GCATCTTTCTGTACTGACATGCA 59.314 43.478 22.67 0.00 35.25 3.96
297 298 2.084610 TGACATGCAGAAGGTTCGAG 57.915 50.000 0.00 0.00 0.00 4.04
298 299 0.723981 GACATGCAGAAGGTTCGAGC 59.276 55.000 0.00 0.00 34.94 5.03
299 300 0.674895 ACATGCAGAAGGTTCGAGCC 60.675 55.000 10.83 10.83 33.95 4.70
300 301 0.674581 CATGCAGAAGGTTCGAGCCA 60.675 55.000 21.22 0.00 33.95 4.75
301 302 0.674895 ATGCAGAAGGTTCGAGCCAC 60.675 55.000 21.22 13.47 33.95 5.01
302 303 2.383527 GCAGAAGGTTCGAGCCACG 61.384 63.158 21.22 6.50 44.09 4.94
316 317 5.006649 CGAGCCACGAACAAATATCATAC 57.993 43.478 0.00 0.00 45.77 2.39
317 318 4.506288 CGAGCCACGAACAAATATCATACA 59.494 41.667 0.00 0.00 45.77 2.29
318 319 5.556382 CGAGCCACGAACAAATATCATACAC 60.556 44.000 0.00 0.00 45.77 2.90
319 320 4.270084 AGCCACGAACAAATATCATACACG 59.730 41.667 0.00 0.00 0.00 4.49
320 321 4.033587 GCCACGAACAAATATCATACACGT 59.966 41.667 0.00 0.00 0.00 4.49
321 322 5.446741 GCCACGAACAAATATCATACACGTT 60.447 40.000 0.00 0.00 0.00 3.99
322 323 6.182634 CCACGAACAAATATCATACACGTTC 58.817 40.000 0.00 0.00 0.00 3.95
323 324 6.182634 CACGAACAAATATCATACACGTTCC 58.817 40.000 0.00 0.00 0.00 3.62
324 325 5.870433 ACGAACAAATATCATACACGTTCCA 59.130 36.000 0.00 0.00 0.00 3.53
325 326 6.537301 ACGAACAAATATCATACACGTTCCAT 59.463 34.615 0.00 0.00 0.00 3.41
326 327 7.707464 ACGAACAAATATCATACACGTTCCATA 59.293 33.333 0.00 0.00 0.00 2.74
327 328 8.544597 CGAACAAATATCATACACGTTCCATAA 58.455 33.333 0.00 0.00 0.00 1.90
328 329 9.646336 GAACAAATATCATACACGTTCCATAAC 57.354 33.333 0.00 0.00 0.00 1.89
329 330 8.725405 ACAAATATCATACACGTTCCATAACA 57.275 30.769 0.00 0.00 35.16 2.41
330 331 8.826710 ACAAATATCATACACGTTCCATAACAG 58.173 33.333 0.00 0.00 35.16 3.16
331 332 7.421530 AATATCATACACGTTCCATAACAGC 57.578 36.000 0.00 0.00 35.16 4.40
332 333 4.195225 TCATACACGTTCCATAACAGCA 57.805 40.909 0.00 0.00 35.16 4.41
333 334 4.180817 TCATACACGTTCCATAACAGCAG 58.819 43.478 0.00 0.00 35.16 4.24
334 335 1.808411 ACACGTTCCATAACAGCAGG 58.192 50.000 0.00 0.00 35.16 4.85
335 336 1.071699 ACACGTTCCATAACAGCAGGT 59.928 47.619 0.00 0.00 35.16 4.00
336 337 1.464608 CACGTTCCATAACAGCAGGTG 59.535 52.381 0.00 0.00 35.16 4.00
395 413 4.141959 ACCTTGACCCAACAAAACAATCTG 60.142 41.667 0.00 0.00 0.00 2.90
463 481 0.801872 CGATGCGGATGACAAACCAA 59.198 50.000 0.00 0.00 0.00 3.67
589 608 2.292323 ACCTATCCGTCTTCCACCTTCT 60.292 50.000 0.00 0.00 0.00 2.85
593 612 2.444421 TCCGTCTTCCACCTTCTCTAC 58.556 52.381 0.00 0.00 0.00 2.59
681 704 3.360340 GGCCAGCAGCACACACTC 61.360 66.667 0.00 0.00 46.50 3.51
682 705 3.720193 GCCAGCAGCACACACTCG 61.720 66.667 0.00 0.00 42.97 4.18
683 706 3.720193 CCAGCAGCACACACTCGC 61.720 66.667 0.00 0.00 0.00 5.03
684 707 2.968697 CAGCAGCACACACTCGCA 60.969 61.111 0.00 0.00 0.00 5.10
685 708 2.969238 AGCAGCACACACTCGCAC 60.969 61.111 0.00 0.00 0.00 5.34
686 709 4.017877 GCAGCACACACTCGCACC 62.018 66.667 0.00 0.00 0.00 5.01
687 710 3.705638 CAGCACACACTCGCACCG 61.706 66.667 0.00 0.00 0.00 4.94
690 714 4.000557 CACACACTCGCACCGCAC 62.001 66.667 0.00 0.00 0.00 5.34
701 725 3.676605 ACCGCACCGATCGACACA 61.677 61.111 18.66 0.00 0.00 3.72
716 740 0.464036 ACACAAGGAACACTCGCTCA 59.536 50.000 0.00 0.00 0.00 4.26
717 741 1.143305 CACAAGGAACACTCGCTCAG 58.857 55.000 0.00 0.00 0.00 3.35
718 742 0.601311 ACAAGGAACACTCGCTCAGC 60.601 55.000 0.00 0.00 0.00 4.26
719 743 0.320247 CAAGGAACACTCGCTCAGCT 60.320 55.000 0.00 0.00 0.00 4.24
720 744 0.320247 AAGGAACACTCGCTCAGCTG 60.320 55.000 7.63 7.63 0.00 4.24
721 745 2.386660 GGAACACTCGCTCAGCTGC 61.387 63.158 9.47 0.00 0.00 5.25
722 746 1.373999 GAACACTCGCTCAGCTGCT 60.374 57.895 9.47 0.00 0.00 4.24
723 747 1.350706 GAACACTCGCTCAGCTGCTC 61.351 60.000 9.47 1.60 0.00 4.26
724 748 2.092319 AACACTCGCTCAGCTGCTCA 62.092 55.000 9.47 0.00 0.00 4.26
725 749 2.093473 CACTCGCTCAGCTGCTCAC 61.093 63.158 9.47 0.00 0.00 3.51
726 750 2.274645 ACTCGCTCAGCTGCTCACT 61.275 57.895 9.47 0.00 0.00 3.41
727 751 1.516821 CTCGCTCAGCTGCTCACTC 60.517 63.158 9.47 0.00 0.00 3.51
728 752 1.936436 CTCGCTCAGCTGCTCACTCT 61.936 60.000 9.47 0.00 0.00 3.24
729 753 1.806351 CGCTCAGCTGCTCACTCTG 60.806 63.158 9.47 0.00 0.00 3.35
730 754 1.292860 GCTCAGCTGCTCACTCTGT 59.707 57.895 9.47 0.00 0.00 3.41
731 755 0.529833 GCTCAGCTGCTCACTCTGTA 59.470 55.000 9.47 0.00 0.00 2.74
732 756 1.469595 GCTCAGCTGCTCACTCTGTAG 60.470 57.143 9.47 0.00 0.00 2.74
733 757 1.818060 CTCAGCTGCTCACTCTGTAGT 59.182 52.381 9.47 0.00 35.91 2.73
734 758 1.815613 TCAGCTGCTCACTCTGTAGTC 59.184 52.381 9.47 0.00 31.97 2.59
735 759 1.135141 CAGCTGCTCACTCTGTAGTCC 60.135 57.143 0.00 0.00 31.97 3.85
989 1013 1.217779 GAGCTGCTCACTCTGTCCC 59.782 63.158 24.02 0.00 0.00 4.46
991 1015 2.575993 CTGCTCACTCTGTCCCCG 59.424 66.667 0.00 0.00 0.00 5.73
992 1016 2.203640 TGCTCACTCTGTCCCCGT 60.204 61.111 0.00 0.00 0.00 5.28
993 1017 1.821061 CTGCTCACTCTGTCCCCGTT 61.821 60.000 0.00 0.00 0.00 4.44
994 1018 1.374758 GCTCACTCTGTCCCCGTTG 60.375 63.158 0.00 0.00 0.00 4.10
995 1019 2.050269 CTCACTCTGTCCCCGTTGT 58.950 57.895 0.00 0.00 0.00 3.32
997 1021 0.757561 TCACTCTGTCCCCGTTGTGA 60.758 55.000 0.00 0.00 32.91 3.58
1032 1062 1.073897 GAAGCACAACCAGCCTCCT 59.926 57.895 0.00 0.00 0.00 3.69
1119 1152 4.227134 ATCTTCTGCCGCGCCGAT 62.227 61.111 0.00 0.00 0.00 4.18
1146 1179 1.050988 ACTGCCTCACTATCCGCCAT 61.051 55.000 0.00 0.00 0.00 4.40
1149 1182 0.320247 GCCTCACTATCCGCCATGAG 60.320 60.000 0.00 0.00 38.65 2.90
1170 1203 3.692406 GTCGTCCTCGCCCCAACT 61.692 66.667 0.00 0.00 36.96 3.16
1186 1219 3.446570 CTAACCCCCGCGACGAGT 61.447 66.667 8.23 0.00 0.00 4.18
1199 1232 0.523072 GACGAGTACCAGGCACGTAA 59.477 55.000 0.00 0.00 37.32 3.18
1201 1234 1.336240 ACGAGTACCAGGCACGTAAAC 60.336 52.381 0.00 0.00 35.49 2.01
1202 1235 1.068055 CGAGTACCAGGCACGTAAACT 60.068 52.381 0.00 0.00 0.00 2.66
1203 1236 2.603953 GAGTACCAGGCACGTAAACTC 58.396 52.381 0.00 0.00 0.00 3.01
1204 1237 1.068055 AGTACCAGGCACGTAAACTCG 60.068 52.381 0.00 0.00 0.00 4.18
1205 1238 0.244450 TACCAGGCACGTAAACTCGG 59.756 55.000 0.00 0.00 34.94 4.63
1206 1239 1.005394 CCAGGCACGTAAACTCGGT 60.005 57.895 0.00 0.00 34.94 4.69
1208 1241 0.319211 CAGGCACGTAAACTCGGTCA 60.319 55.000 0.00 0.00 34.94 4.02
1212 1245 2.598589 GCACGTAAACTCGGTCATACA 58.401 47.619 0.00 0.00 34.94 2.29
1213 1246 2.988493 GCACGTAAACTCGGTCATACAA 59.012 45.455 0.00 0.00 34.94 2.41
1215 1248 4.799949 GCACGTAAACTCGGTCATACAATA 59.200 41.667 0.00 0.00 34.94 1.90
1216 1249 5.289193 GCACGTAAACTCGGTCATACAATAA 59.711 40.000 0.00 0.00 34.94 1.40
1219 1252 7.062605 CACGTAAACTCGGTCATACAATAACTT 59.937 37.037 0.00 0.00 34.94 2.66
1221 1254 7.274033 CGTAAACTCGGTCATACAATAACTTCA 59.726 37.037 0.00 0.00 0.00 3.02
1222 1255 9.095065 GTAAACTCGGTCATACAATAACTTCAT 57.905 33.333 0.00 0.00 0.00 2.57
1223 1256 8.561738 AAACTCGGTCATACAATAACTTCATT 57.438 30.769 0.00 0.00 0.00 2.57
1224 1257 7.539712 ACTCGGTCATACAATAACTTCATTG 57.460 36.000 0.00 0.00 40.93 2.82
1227 1260 7.100409 TCGGTCATACAATAACTTCATTGTCA 58.900 34.615 4.84 0.00 43.96 3.58
1229 1262 9.040939 CGGTCATACAATAACTTCATTGTCATA 57.959 33.333 4.84 0.00 43.96 2.15
1236 1269 8.869897 ACAATAACTTCATTGTCATACTGTACG 58.130 33.333 0.00 0.00 43.96 3.67
1237 1270 9.083080 CAATAACTTCATTGTCATACTGTACGA 57.917 33.333 0.00 0.00 32.33 3.43
1238 1271 9.647797 AATAACTTCATTGTCATACTGTACGAA 57.352 29.630 0.00 0.00 0.00 3.85
1239 1272 9.817809 ATAACTTCATTGTCATACTGTACGAAT 57.182 29.630 0.00 0.00 0.00 3.34
1264 1300 3.399216 CGTACGTACGTAGAAGTGACAC 58.601 50.000 33.95 14.32 44.13 3.67
1274 1328 3.996150 AGAAGTGACACTTTTGCATGG 57.004 42.857 21.42 0.00 38.80 3.66
1277 1331 2.387757 AGTGACACTTTTGCATGGGTT 58.612 42.857 1.07 0.00 0.00 4.11
1282 1336 0.108396 ACTTTTGCATGGGTTTGGGC 59.892 50.000 0.00 0.00 0.00 5.36
1457 1676 2.044555 CCTGGACGAGTCGGTGCTA 61.045 63.158 18.30 2.97 0.00 3.49
1607 1826 0.473694 TCTGGGAGTTCTGCAAGGGA 60.474 55.000 0.00 0.00 0.00 4.20
1733 1982 1.524863 CGTATGGAGGAGGCTACCGG 61.525 65.000 0.00 0.00 34.73 5.28
1787 2036 2.438975 CATGCCCACGGTGCAGAT 60.439 61.111 1.68 0.00 42.92 2.90
1946 2195 1.752198 CACCAACCCCAGAGACGAA 59.248 57.895 0.00 0.00 0.00 3.85
1961 2320 2.806244 AGACGAATTCCAGGTGAAAACG 59.194 45.455 0.00 0.00 39.60 3.60
1982 2343 5.182487 ACGAAATGGACATGCACATACTAA 58.818 37.500 3.45 0.00 0.00 2.24
2051 2412 4.722194 TCATCTCTGTTAATTTTGCGTGC 58.278 39.130 0.00 0.00 0.00 5.34
2059 2426 1.196200 AATTTTGCGTGCGTGACAAC 58.804 45.000 0.00 0.00 0.00 3.32
2178 2545 0.323178 AAGCCATCAAGCACTCCCTG 60.323 55.000 0.00 0.00 34.23 4.45
2181 2548 1.077212 CATCAAGCACTCCCTGGGG 60.077 63.158 14.00 6.27 0.00 4.96
2214 2581 4.278419 CCTGTAAGCAAAACTAAGCCACTT 59.722 41.667 0.00 0.00 0.00 3.16
2240 2609 6.613271 ACAAACACATACTCTCTCCTATCCAT 59.387 38.462 0.00 0.00 0.00 3.41
2242 2611 8.811017 CAAACACATACTCTCTCCTATCCATAT 58.189 37.037 0.00 0.00 0.00 1.78
2294 2663 4.586884 ACGTTGATACCTGTCTCTGTCTA 58.413 43.478 0.00 0.00 0.00 2.59
2297 2666 5.297029 CGTTGATACCTGTCTCTGTCTATGA 59.703 44.000 0.00 0.00 0.00 2.15
2312 2681 9.829507 CTCTGTCTATGATCCTTAAATTCAAGT 57.170 33.333 0.00 0.00 0.00 3.16
2322 2691 6.361433 TCCTTAAATTCAAGTGAGTTGGTCA 58.639 36.000 0.00 0.00 36.71 4.02
2341 2710 2.419011 AATGCAGGGGTTGGCACGTA 62.419 55.000 0.00 0.00 43.75 3.57
2386 2764 1.209998 TTCGCGTCACACGAATTGAA 58.790 45.000 5.77 0.00 46.05 2.69
2387 2765 1.424403 TCGCGTCACACGAATTGAAT 58.576 45.000 5.77 0.00 46.05 2.57
2388 2766 1.795872 TCGCGTCACACGAATTGAATT 59.204 42.857 5.77 0.00 46.05 2.17
2390 2768 2.410902 CGCGTCACACGAATTGAATTGA 60.411 45.455 0.00 0.00 46.05 2.57
2392 2770 3.971871 GCGTCACACGAATTGAATTGAAA 59.028 39.130 0.00 0.00 46.05 2.69
2393 2771 4.616802 GCGTCACACGAATTGAATTGAAAT 59.383 37.500 0.00 0.00 46.05 2.17
2411 2821 2.486472 ATTGTTCTCCACCTGCTCTG 57.514 50.000 0.00 0.00 0.00 3.35
2430 2843 3.108144 CTGGTTTTTGAGACGTTTGCAG 58.892 45.455 0.00 0.00 0.00 4.41
2479 2901 0.952984 GTGGACTGCAGGTGAAGCTC 60.953 60.000 19.93 4.06 0.00 4.09
2734 3190 3.610040 TCTTCACGGCATTGTACTCAT 57.390 42.857 0.00 0.00 0.00 2.90
2748 3204 4.338012 TGTACTCATCCTTGACCGTTCTA 58.662 43.478 0.00 0.00 0.00 2.10
2812 3635 0.737715 GAGAGTGTGCCTTACTGCCG 60.738 60.000 0.00 0.00 0.00 5.69
2819 3642 2.202756 CCTTACTGCCGTCCGCTC 60.203 66.667 0.00 0.00 38.78 5.03
2927 5433 2.358267 GAGACCGGATCGCTTCTTTCTA 59.642 50.000 9.46 0.00 0.00 2.10
2973 5479 3.465403 CTGCAGGGCGGTCTAGCT 61.465 66.667 5.57 0.00 37.29 3.32
2976 5482 1.261938 TGCAGGGCGGTCTAGCTAAA 61.262 55.000 0.00 0.00 37.29 1.85
3006 5512 1.109920 AGTGCCGTCTGGATCGCTAT 61.110 55.000 0.00 0.00 37.49 2.97
3072 5581 3.880490 AGTGTAGTTCGTTTGCATTTGGA 59.120 39.130 0.00 0.00 0.00 3.53
3103 5612 9.569167 TCGAAAGAATAACAAGTAGTATGACTG 57.431 33.333 0.00 0.00 37.03 3.51
3104 5613 9.355215 CGAAAGAATAACAAGTAGTATGACTGT 57.645 33.333 0.00 0.00 0.00 3.55
3201 5953 0.035176 TGCTGTTACCGTTGGTACCC 59.965 55.000 10.07 0.00 37.97 3.69
3208 5960 2.031465 CGTTGGTACCCGGCAAGT 59.969 61.111 10.07 0.00 0.00 3.16
3267 6059 8.046708 AGAAATGGAGGTTTATAATTTTTGGCC 58.953 33.333 0.00 0.00 0.00 5.36
3363 6161 3.312973 CCGCCCAACGCATTACTTAAATA 59.687 43.478 0.00 0.00 41.76 1.40
3487 6297 2.441410 TGAAATTGCCGCCATTAGACA 58.559 42.857 0.00 0.00 0.00 3.41
3491 6301 5.301551 TGAAATTGCCGCCATTAGACAATAT 59.698 36.000 0.00 0.00 31.05 1.28
3538 6353 4.978083 ATCTGGACACTTGATTGCAATC 57.022 40.909 28.83 28.83 32.68 2.67
3566 6744 2.816411 TCCACAGAAATACCTCCGTCT 58.184 47.619 0.00 0.00 0.00 4.18
3583 6761 5.885020 CCGTCTCGGTGAATAAGTTATTC 57.115 43.478 23.28 23.28 42.73 1.75
3584 6762 5.125900 TCCGTCTCGGTGAATAAGTTATTCA 59.874 40.000 27.12 27.12 46.91 2.57
3599 6777 6.116680 AGTTATTCACGTAGTTCTAGGTCG 57.883 41.667 0.00 0.00 41.61 4.79
3600 6778 5.877012 AGTTATTCACGTAGTTCTAGGTCGA 59.123 40.000 0.00 0.00 41.61 4.20
3602 6780 3.044235 TCACGTAGTTCTAGGTCGACA 57.956 47.619 18.91 0.00 41.61 4.35
3604 6782 4.005650 TCACGTAGTTCTAGGTCGACAAT 58.994 43.478 18.91 7.85 41.61 2.71
3605 6783 4.456911 TCACGTAGTTCTAGGTCGACAATT 59.543 41.667 18.91 4.78 41.61 2.32
3606 6784 5.048504 TCACGTAGTTCTAGGTCGACAATTT 60.049 40.000 18.91 2.13 41.61 1.82
3607 6785 6.149308 TCACGTAGTTCTAGGTCGACAATTTA 59.851 38.462 18.91 3.24 41.61 1.40
3609 6787 6.803807 ACGTAGTTCTAGGTCGACAATTTAAC 59.196 38.462 18.91 13.65 37.78 2.01
3610 6788 7.025963 CGTAGTTCTAGGTCGACAATTTAACT 58.974 38.462 18.91 19.25 0.00 2.24
3611 6789 8.177663 CGTAGTTCTAGGTCGACAATTTAACTA 58.822 37.037 18.91 18.35 0.00 2.24
3614 6792 9.939802 AGTTCTAGGTCGACAATTTAACTATTT 57.060 29.630 18.91 0.00 0.00 1.40
3674 6852 9.715121 TTAGAAACTACATCCGTGTAAAAATCT 57.285 29.630 0.00 0.00 40.16 2.40
3677 6855 9.148104 GAAACTACATCCGTGTAAAAATCTAGT 57.852 33.333 0.00 0.00 40.16 2.57
3681 6859 9.577110 CTACATCCGTGTAAAAATCTAGTAACA 57.423 33.333 0.00 0.00 40.16 2.41
3682 6860 8.248117 ACATCCGTGTAAAAATCTAGTAACAC 57.752 34.615 0.00 0.00 36.63 3.32
3686 6864 8.796475 TCCGTGTAAAAATCTAGTAACACTACT 58.204 33.333 0.00 0.00 41.43 2.57
3697 6875 5.417754 AGTAACACTACTAGGGAAAAGCC 57.582 43.478 0.00 0.00 36.56 4.35
3698 6876 5.092259 AGTAACACTACTAGGGAAAAGCCT 58.908 41.667 0.00 0.00 36.56 4.58
3699 6877 6.259123 AGTAACACTACTAGGGAAAAGCCTA 58.741 40.000 0.00 0.00 36.56 3.93
3701 6879 3.451540 ACACTACTAGGGAAAAGCCTAGC 59.548 47.826 0.00 0.00 39.48 3.42
3703 6881 3.707102 ACTACTAGGGAAAAGCCTAGCAG 59.293 47.826 0.00 0.00 39.48 4.24
3704 6882 1.210722 ACTAGGGAAAAGCCTAGCAGC 59.789 52.381 0.00 0.00 39.48 5.25
3705 6883 1.210478 CTAGGGAAAAGCCTAGCAGCA 59.790 52.381 0.00 0.00 36.66 4.41
3706 6884 0.034670 AGGGAAAAGCCTAGCAGCAG 60.035 55.000 0.00 0.00 36.66 4.24
3707 6885 1.661498 GGGAAAAGCCTAGCAGCAGC 61.661 60.000 0.00 0.00 37.73 5.25
3718 6896 2.887568 CAGCAGCGCGGGTTCTAG 60.888 66.667 10.16 0.00 0.00 2.43
3720 6898 4.452733 GCAGCGCGGGTTCTAGGT 62.453 66.667 8.83 0.00 0.00 3.08
3721 6899 3.072486 GCAGCGCGGGTTCTAGGTA 62.072 63.158 8.83 0.00 0.00 3.08
3722 6900 1.740285 CAGCGCGGGTTCTAGGTAT 59.260 57.895 8.83 0.00 0.00 2.73
3723 6901 0.956633 CAGCGCGGGTTCTAGGTATA 59.043 55.000 8.83 0.00 0.00 1.47
3724 6902 1.544691 CAGCGCGGGTTCTAGGTATAT 59.455 52.381 8.83 0.00 0.00 0.86
3726 6904 1.542915 GCGCGGGTTCTAGGTATATCA 59.457 52.381 8.83 0.00 0.00 2.15
3728 6906 2.818432 CGCGGGTTCTAGGTATATCAGT 59.182 50.000 0.00 0.00 0.00 3.41
3729 6907 4.005650 CGCGGGTTCTAGGTATATCAGTA 58.994 47.826 0.00 0.00 0.00 2.74
3731 6909 4.142425 GCGGGTTCTAGGTATATCAGTAGC 60.142 50.000 0.00 0.00 0.00 3.58
3732 6910 4.094590 CGGGTTCTAGGTATATCAGTAGCG 59.905 50.000 0.00 0.00 0.00 4.26
3733 6911 4.142425 GGGTTCTAGGTATATCAGTAGCGC 60.142 50.000 0.00 0.00 0.00 5.92
3734 6912 4.437121 GGTTCTAGGTATATCAGTAGCGCG 60.437 50.000 0.00 0.00 0.00 6.86
3735 6913 3.268330 TCTAGGTATATCAGTAGCGCGG 58.732 50.000 8.83 0.00 0.00 6.46
3736 6914 1.906990 AGGTATATCAGTAGCGCGGT 58.093 50.000 17.70 17.70 0.00 5.68
3737 6915 1.540267 AGGTATATCAGTAGCGCGGTG 59.460 52.381 23.02 4.11 0.00 4.94
3738 6916 1.402456 GGTATATCAGTAGCGCGGTGG 60.402 57.143 23.02 10.58 0.00 4.61
3739 6917 0.242825 TATATCAGTAGCGCGGTGGC 59.757 55.000 23.02 13.72 0.00 5.01
3751 6929 2.682494 GGTGGCCGACCCTACTGA 60.682 66.667 12.03 0.00 39.10 3.41
3752 6930 2.064581 GGTGGCCGACCCTACTGAT 61.065 63.158 12.03 0.00 39.10 2.90
3754 6932 1.117150 GTGGCCGACCCTACTGATAA 58.883 55.000 0.00 0.00 33.59 1.75
3755 6933 1.068741 GTGGCCGACCCTACTGATAAG 59.931 57.143 0.00 0.00 33.59 1.73
3756 6934 0.680061 GGCCGACCCTACTGATAAGG 59.320 60.000 0.00 0.00 0.00 2.69
3758 6936 0.314302 CCGACCCTACTGATAAGGCG 59.686 60.000 0.00 0.00 32.34 5.52
3759 6937 0.318784 CGACCCTACTGATAAGGCGC 60.319 60.000 0.00 0.00 32.34 6.53
3760 6938 1.041437 GACCCTACTGATAAGGCGCT 58.959 55.000 7.64 0.00 32.34 5.92
3761 6939 2.236766 GACCCTACTGATAAGGCGCTA 58.763 52.381 7.64 0.00 32.34 4.26
3762 6940 1.962100 ACCCTACTGATAAGGCGCTAC 59.038 52.381 7.64 0.00 32.34 3.58
3763 6941 1.961394 CCCTACTGATAAGGCGCTACA 59.039 52.381 7.64 0.00 32.34 2.74
3764 6942 2.029828 CCCTACTGATAAGGCGCTACAG 60.030 54.545 7.64 12.10 32.34 2.74
3765 6943 2.608261 CCTACTGATAAGGCGCTACAGC 60.608 54.545 7.64 0.00 37.78 4.40
3766 6944 1.115467 ACTGATAAGGCGCTACAGCT 58.885 50.000 7.64 0.00 39.32 4.24
3767 6945 2.307768 ACTGATAAGGCGCTACAGCTA 58.692 47.619 7.64 0.00 39.32 3.32
3768 6946 2.693591 ACTGATAAGGCGCTACAGCTAA 59.306 45.455 7.64 0.00 39.32 3.09
3769 6947 3.132289 ACTGATAAGGCGCTACAGCTAAA 59.868 43.478 7.64 0.00 39.32 1.85
3770 6948 3.454375 TGATAAGGCGCTACAGCTAAAC 58.546 45.455 7.64 0.00 39.32 2.01
3771 6949 3.132289 TGATAAGGCGCTACAGCTAAACT 59.868 43.478 7.64 0.00 39.32 2.66
3782 6960 3.461946 CAGCTAAACTGTAGCAGCAAC 57.538 47.619 8.00 0.00 42.68 4.17
3783 6961 2.069273 AGCTAAACTGTAGCAGCAACG 58.931 47.619 8.00 0.00 42.68 4.10
3785 6963 0.787787 TAAACTGTAGCAGCAACGCG 59.212 50.000 3.53 3.53 34.37 6.01
3789 6967 2.170985 GTAGCAGCAACGCGTGTG 59.829 61.111 14.98 14.63 36.85 3.82
3793 6971 4.962122 CAGCAACGCGTGTGCACC 62.962 66.667 32.36 14.95 42.97 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.615056 CACAACGATGCCACGTAGATTAA 59.385 43.478 5.77 0.00 45.83 1.40
1 2 3.183754 CACAACGATGCCACGTAGATTA 58.816 45.455 5.77 0.00 45.83 1.75
2 3 1.999735 CACAACGATGCCACGTAGATT 59.000 47.619 5.77 0.00 45.83 2.40
4 5 0.389296 CCACAACGATGCCACGTAGA 60.389 55.000 5.77 0.00 45.83 2.59
5 6 1.358725 CCCACAACGATGCCACGTAG 61.359 60.000 5.77 0.00 45.83 3.51
8 9 4.101790 GCCCACAACGATGCCACG 62.102 66.667 0.00 0.00 39.31 4.94
9 10 3.747976 GGCCCACAACGATGCCAC 61.748 66.667 0.00 0.00 43.46 5.01
13 14 3.803082 CTGCGGCCCACAACGATG 61.803 66.667 0.00 0.00 0.00 3.84
14 15 2.819984 ATTCTGCGGCCCACAACGAT 62.820 55.000 0.00 0.00 0.00 3.73
15 16 3.545124 ATTCTGCGGCCCACAACGA 62.545 57.895 0.00 0.00 0.00 3.85
16 17 3.039202 GATTCTGCGGCCCACAACG 62.039 63.158 0.00 0.00 0.00 4.10
17 18 1.648467 GAGATTCTGCGGCCCACAAC 61.648 60.000 0.00 0.00 0.00 3.32
18 19 1.377202 GAGATTCTGCGGCCCACAA 60.377 57.895 0.00 0.00 0.00 3.33
19 20 2.123248 TTGAGATTCTGCGGCCCACA 62.123 55.000 0.00 0.00 0.00 4.17
20 21 1.372087 CTTGAGATTCTGCGGCCCAC 61.372 60.000 0.00 0.00 0.00 4.61
21 22 1.078214 CTTGAGATTCTGCGGCCCA 60.078 57.895 0.00 0.00 0.00 5.36
22 23 1.092345 GTCTTGAGATTCTGCGGCCC 61.092 60.000 0.00 0.00 0.00 5.80
23 24 1.092345 GGTCTTGAGATTCTGCGGCC 61.092 60.000 0.00 0.00 0.00 6.13
24 25 1.092345 GGGTCTTGAGATTCTGCGGC 61.092 60.000 0.00 0.00 0.00 6.53
25 26 0.539051 AGGGTCTTGAGATTCTGCGG 59.461 55.000 0.00 0.00 0.00 5.69
26 27 2.482142 GGTAGGGTCTTGAGATTCTGCG 60.482 54.545 0.00 0.00 0.00 5.18
27 28 2.501723 TGGTAGGGTCTTGAGATTCTGC 59.498 50.000 0.00 0.00 0.00 4.26
28 29 3.431486 GCTGGTAGGGTCTTGAGATTCTG 60.431 52.174 0.00 0.00 0.00 3.02
29 30 2.769095 GCTGGTAGGGTCTTGAGATTCT 59.231 50.000 0.00 0.00 0.00 2.40
30 31 2.501723 TGCTGGTAGGGTCTTGAGATTC 59.498 50.000 0.00 0.00 0.00 2.52
31 32 2.237392 GTGCTGGTAGGGTCTTGAGATT 59.763 50.000 0.00 0.00 0.00 2.40
32 33 1.834263 GTGCTGGTAGGGTCTTGAGAT 59.166 52.381 0.00 0.00 0.00 2.75
33 34 1.267121 GTGCTGGTAGGGTCTTGAGA 58.733 55.000 0.00 0.00 0.00 3.27
34 35 0.976641 TGTGCTGGTAGGGTCTTGAG 59.023 55.000 0.00 0.00 0.00 3.02
35 36 1.278985 CATGTGCTGGTAGGGTCTTGA 59.721 52.381 0.00 0.00 0.00 3.02
36 37 1.278985 TCATGTGCTGGTAGGGTCTTG 59.721 52.381 0.00 0.00 0.00 3.02
37 38 1.656587 TCATGTGCTGGTAGGGTCTT 58.343 50.000 0.00 0.00 0.00 3.01
38 39 1.885049 ATCATGTGCTGGTAGGGTCT 58.115 50.000 0.00 0.00 0.00 3.85
39 40 2.717639 AATCATGTGCTGGTAGGGTC 57.282 50.000 0.00 0.00 0.00 4.46
40 41 4.584638 TTTAATCATGTGCTGGTAGGGT 57.415 40.909 0.00 0.00 0.00 4.34
41 42 5.652014 TCTTTTTAATCATGTGCTGGTAGGG 59.348 40.000 0.00 0.00 0.00 3.53
42 43 6.599244 TCTCTTTTTAATCATGTGCTGGTAGG 59.401 38.462 0.00 0.00 0.00 3.18
43 44 7.615582 TCTCTTTTTAATCATGTGCTGGTAG 57.384 36.000 0.00 0.00 0.00 3.18
44 45 7.415541 GCATCTCTTTTTAATCATGTGCTGGTA 60.416 37.037 0.00 0.00 0.00 3.25
45 46 6.626623 GCATCTCTTTTTAATCATGTGCTGGT 60.627 38.462 0.00 0.00 0.00 4.00
46 47 5.747197 GCATCTCTTTTTAATCATGTGCTGG 59.253 40.000 0.00 0.00 0.00 4.85
47 48 6.327154 TGCATCTCTTTTTAATCATGTGCTG 58.673 36.000 0.00 0.00 0.00 4.41
48 49 6.376299 TCTGCATCTCTTTTTAATCATGTGCT 59.624 34.615 0.00 0.00 0.00 4.40
49 50 6.558009 TCTGCATCTCTTTTTAATCATGTGC 58.442 36.000 0.00 0.00 0.00 4.57
50 51 8.403236 TCATCTGCATCTCTTTTTAATCATGTG 58.597 33.333 0.00 0.00 0.00 3.21
51 52 8.404000 GTCATCTGCATCTCTTTTTAATCATGT 58.596 33.333 0.00 0.00 0.00 3.21
52 53 8.403236 TGTCATCTGCATCTCTTTTTAATCATG 58.597 33.333 0.00 0.00 0.00 3.07
53 54 8.515695 TGTCATCTGCATCTCTTTTTAATCAT 57.484 30.769 0.00 0.00 0.00 2.45
54 55 7.926674 TGTCATCTGCATCTCTTTTTAATCA 57.073 32.000 0.00 0.00 0.00 2.57
55 56 9.286946 CTTTGTCATCTGCATCTCTTTTTAATC 57.713 33.333 0.00 0.00 0.00 1.75
56 57 8.800332 ACTTTGTCATCTGCATCTCTTTTTAAT 58.200 29.630 0.00 0.00 0.00 1.40
57 58 8.169977 ACTTTGTCATCTGCATCTCTTTTTAA 57.830 30.769 0.00 0.00 0.00 1.52
58 59 7.663081 AGACTTTGTCATCTGCATCTCTTTTTA 59.337 33.333 0.00 0.00 34.60 1.52
59 60 6.489361 AGACTTTGTCATCTGCATCTCTTTTT 59.511 34.615 0.00 0.00 34.60 1.94
60 61 6.002704 AGACTTTGTCATCTGCATCTCTTTT 58.997 36.000 0.00 0.00 34.60 2.27
61 62 5.411977 CAGACTTTGTCATCTGCATCTCTTT 59.588 40.000 0.00 0.00 36.22 2.52
62 63 4.936411 CAGACTTTGTCATCTGCATCTCTT 59.064 41.667 0.00 0.00 36.22 2.85
63 64 4.222366 TCAGACTTTGTCATCTGCATCTCT 59.778 41.667 0.00 0.00 41.82 3.10
64 65 4.502016 TCAGACTTTGTCATCTGCATCTC 58.498 43.478 0.00 0.00 41.82 2.75
65 66 4.548451 TCAGACTTTGTCATCTGCATCT 57.452 40.909 0.00 0.00 41.82 2.90
66 67 4.694509 ACTTCAGACTTTGTCATCTGCATC 59.305 41.667 0.00 0.00 41.82 3.91
67 68 4.454847 CACTTCAGACTTTGTCATCTGCAT 59.545 41.667 0.00 0.00 41.82 3.96
68 69 3.811497 CACTTCAGACTTTGTCATCTGCA 59.189 43.478 0.46 0.00 41.82 4.41
69 70 4.060900 TCACTTCAGACTTTGTCATCTGC 58.939 43.478 0.46 0.00 41.82 4.26
70 71 4.689812 CCTCACTTCAGACTTTGTCATCTG 59.310 45.833 0.46 0.00 43.16 2.90
71 72 4.262808 CCCTCACTTCAGACTTTGTCATCT 60.263 45.833 0.46 0.00 34.60 2.90
72 73 3.999663 CCCTCACTTCAGACTTTGTCATC 59.000 47.826 0.46 0.00 34.60 2.92
73 74 3.648067 TCCCTCACTTCAGACTTTGTCAT 59.352 43.478 0.46 0.00 34.60 3.06
74 75 3.038280 TCCCTCACTTCAGACTTTGTCA 58.962 45.455 0.46 0.00 34.60 3.58
75 76 3.322254 TCTCCCTCACTTCAGACTTTGTC 59.678 47.826 0.00 0.00 0.00 3.18
76 77 3.309296 TCTCCCTCACTTCAGACTTTGT 58.691 45.455 0.00 0.00 0.00 2.83
77 78 3.576118 TCTCTCCCTCACTTCAGACTTTG 59.424 47.826 0.00 0.00 0.00 2.77
78 79 3.576550 GTCTCTCCCTCACTTCAGACTTT 59.423 47.826 0.00 0.00 0.00 2.66
79 80 3.161866 GTCTCTCCCTCACTTCAGACTT 58.838 50.000 0.00 0.00 0.00 3.01
80 81 2.802719 GTCTCTCCCTCACTTCAGACT 58.197 52.381 0.00 0.00 0.00 3.24
81 82 1.470890 CGTCTCTCCCTCACTTCAGAC 59.529 57.143 0.00 0.00 0.00 3.51
82 83 1.614583 CCGTCTCTCCCTCACTTCAGA 60.615 57.143 0.00 0.00 0.00 3.27
83 84 0.814457 CCGTCTCTCCCTCACTTCAG 59.186 60.000 0.00 0.00 0.00 3.02
84 85 0.404426 TCCGTCTCTCCCTCACTTCA 59.596 55.000 0.00 0.00 0.00 3.02
85 86 1.770294 ATCCGTCTCTCCCTCACTTC 58.230 55.000 0.00 0.00 0.00 3.01
86 87 3.383698 TTATCCGTCTCTCCCTCACTT 57.616 47.619 0.00 0.00 0.00 3.16
87 88 3.603965 ATTATCCGTCTCTCCCTCACT 57.396 47.619 0.00 0.00 0.00 3.41
88 89 7.648039 AATATATTATCCGTCTCTCCCTCAC 57.352 40.000 0.00 0.00 0.00 3.51
89 90 8.666129 AAAATATATTATCCGTCTCTCCCTCA 57.334 34.615 0.00 0.00 0.00 3.86
127 128 5.419471 AGGACCTGACTGAATAGAGTGTAAC 59.581 44.000 0.00 0.00 0.00 2.50
128 129 5.580998 AGGACCTGACTGAATAGAGTGTAA 58.419 41.667 0.00 0.00 0.00 2.41
129 130 5.194473 AGGACCTGACTGAATAGAGTGTA 57.806 43.478 0.00 0.00 0.00 2.90
130 131 4.054359 AGGACCTGACTGAATAGAGTGT 57.946 45.455 0.00 0.00 0.00 3.55
131 132 5.413309 AAAGGACCTGACTGAATAGAGTG 57.587 43.478 0.00 0.00 0.00 3.51
132 133 7.741554 AATAAAGGACCTGACTGAATAGAGT 57.258 36.000 0.00 0.00 0.00 3.24
133 134 9.103861 GAAAATAAAGGACCTGACTGAATAGAG 57.896 37.037 0.00 0.00 0.00 2.43
134 135 8.602424 TGAAAATAAAGGACCTGACTGAATAGA 58.398 33.333 0.00 0.00 0.00 1.98
135 136 8.792830 TGAAAATAAAGGACCTGACTGAATAG 57.207 34.615 0.00 0.00 0.00 1.73
136 137 9.177608 CATGAAAATAAAGGACCTGACTGAATA 57.822 33.333 0.00 0.00 0.00 1.75
137 138 7.363268 GCATGAAAATAAAGGACCTGACTGAAT 60.363 37.037 0.00 0.00 0.00 2.57
138 139 6.071952 GCATGAAAATAAAGGACCTGACTGAA 60.072 38.462 0.00 0.00 0.00 3.02
139 140 5.415701 GCATGAAAATAAAGGACCTGACTGA 59.584 40.000 0.00 0.00 0.00 3.41
140 141 5.183713 TGCATGAAAATAAAGGACCTGACTG 59.816 40.000 0.00 0.00 0.00 3.51
141 142 5.324409 TGCATGAAAATAAAGGACCTGACT 58.676 37.500 0.00 0.00 0.00 3.41
142 143 5.643379 TGCATGAAAATAAAGGACCTGAC 57.357 39.130 0.00 0.00 0.00 3.51
143 144 5.047377 GGTTGCATGAAAATAAAGGACCTGA 60.047 40.000 0.00 0.00 0.00 3.86
144 145 5.047092 AGGTTGCATGAAAATAAAGGACCTG 60.047 40.000 0.00 0.00 32.89 4.00
145 146 5.086621 AGGTTGCATGAAAATAAAGGACCT 58.913 37.500 0.00 0.00 0.00 3.85
146 147 5.185828 AGAGGTTGCATGAAAATAAAGGACC 59.814 40.000 0.00 0.00 0.00 4.46
147 148 6.272822 AGAGGTTGCATGAAAATAAAGGAC 57.727 37.500 0.00 0.00 0.00 3.85
148 149 8.415950 TTTAGAGGTTGCATGAAAATAAAGGA 57.584 30.769 0.00 0.00 0.00 3.36
149 150 9.487790 TTTTTAGAGGTTGCATGAAAATAAAGG 57.512 29.630 0.00 0.00 0.00 3.11
152 153 9.352784 CGATTTTTAGAGGTTGCATGAAAATAA 57.647 29.630 0.00 0.00 0.00 1.40
153 154 8.519526 ACGATTTTTAGAGGTTGCATGAAAATA 58.480 29.630 0.00 0.00 0.00 1.40
154 155 7.378181 ACGATTTTTAGAGGTTGCATGAAAAT 58.622 30.769 0.00 0.00 0.00 1.82
155 156 6.744112 ACGATTTTTAGAGGTTGCATGAAAA 58.256 32.000 0.00 0.00 0.00 2.29
156 157 6.325919 ACGATTTTTAGAGGTTGCATGAAA 57.674 33.333 0.00 0.00 0.00 2.69
157 158 5.106317 GGACGATTTTTAGAGGTTGCATGAA 60.106 40.000 0.00 0.00 0.00 2.57
158 159 4.394920 GGACGATTTTTAGAGGTTGCATGA 59.605 41.667 0.00 0.00 0.00 3.07
159 160 4.396166 AGGACGATTTTTAGAGGTTGCATG 59.604 41.667 0.00 0.00 0.00 4.06
160 161 4.589908 AGGACGATTTTTAGAGGTTGCAT 58.410 39.130 0.00 0.00 0.00 3.96
161 162 4.015872 AGGACGATTTTTAGAGGTTGCA 57.984 40.909 0.00 0.00 0.00 4.08
162 163 5.447413 GCTAAGGACGATTTTTAGAGGTTGC 60.447 44.000 0.00 0.00 0.00 4.17
163 164 5.875359 AGCTAAGGACGATTTTTAGAGGTTG 59.125 40.000 0.00 0.00 0.00 3.77
164 165 6.051179 AGCTAAGGACGATTTTTAGAGGTT 57.949 37.500 0.00 0.00 0.00 3.50
165 166 5.678955 AGCTAAGGACGATTTTTAGAGGT 57.321 39.130 0.00 0.00 0.00 3.85
166 167 6.919115 GTCTAGCTAAGGACGATTTTTAGAGG 59.081 42.308 0.00 0.00 0.00 3.69
167 168 7.708998 AGTCTAGCTAAGGACGATTTTTAGAG 58.291 38.462 7.32 0.00 37.52 2.43
168 169 7.556996 AGAGTCTAGCTAAGGACGATTTTTAGA 59.443 37.037 7.32 0.00 37.52 2.10
169 170 7.708998 AGAGTCTAGCTAAGGACGATTTTTAG 58.291 38.462 7.32 0.00 37.52 1.85
170 171 7.642082 AGAGTCTAGCTAAGGACGATTTTTA 57.358 36.000 7.32 0.00 37.52 1.52
171 172 6.532988 AGAGTCTAGCTAAGGACGATTTTT 57.467 37.500 7.32 0.00 37.52 1.94
172 173 7.826918 ATAGAGTCTAGCTAAGGACGATTTT 57.173 36.000 5.98 0.00 37.52 1.82
173 174 7.502895 TGAATAGAGTCTAGCTAAGGACGATTT 59.497 37.037 5.98 2.17 37.52 2.17
174 175 6.999272 TGAATAGAGTCTAGCTAAGGACGATT 59.001 38.462 5.98 8.29 37.52 3.34
175 176 6.535540 TGAATAGAGTCTAGCTAAGGACGAT 58.464 40.000 5.98 3.89 37.52 3.73
176 177 5.926663 TGAATAGAGTCTAGCTAAGGACGA 58.073 41.667 5.98 0.00 37.52 4.20
177 178 5.761234 ACTGAATAGAGTCTAGCTAAGGACG 59.239 44.000 5.98 0.00 37.52 4.79
178 179 6.768861 TGACTGAATAGAGTCTAGCTAAGGAC 59.231 42.308 5.98 5.24 42.58 3.85
179 180 6.901300 TGACTGAATAGAGTCTAGCTAAGGA 58.099 40.000 5.98 0.00 42.58 3.36
180 181 6.206634 CCTGACTGAATAGAGTCTAGCTAAGG 59.793 46.154 5.98 3.01 42.58 2.69
181 182 6.770785 ACCTGACTGAATAGAGTCTAGCTAAG 59.229 42.308 5.98 3.69 42.58 2.18
182 183 6.664714 ACCTGACTGAATAGAGTCTAGCTAA 58.335 40.000 5.98 0.00 42.58 3.09
183 184 6.255294 ACCTGACTGAATAGAGTCTAGCTA 57.745 41.667 5.98 0.00 42.58 3.32
184 185 5.124036 ACCTGACTGAATAGAGTCTAGCT 57.876 43.478 5.98 0.00 42.58 3.32
185 186 5.504994 CGAACCTGACTGAATAGAGTCTAGC 60.505 48.000 5.98 1.28 42.58 3.42
186 187 5.504994 GCGAACCTGACTGAATAGAGTCTAG 60.505 48.000 5.98 0.00 42.58 2.43
187 188 4.335874 GCGAACCTGACTGAATAGAGTCTA 59.664 45.833 1.45 1.45 42.58 2.59
188 189 3.129638 GCGAACCTGACTGAATAGAGTCT 59.870 47.826 0.00 0.00 42.58 3.24
189 190 3.440228 GCGAACCTGACTGAATAGAGTC 58.560 50.000 0.00 0.00 42.46 3.36
190 191 2.166664 GGCGAACCTGACTGAATAGAGT 59.833 50.000 0.00 0.00 0.00 3.24
191 192 2.815478 GGCGAACCTGACTGAATAGAG 58.185 52.381 0.00 0.00 0.00 2.43
192 193 2.961526 GGCGAACCTGACTGAATAGA 57.038 50.000 0.00 0.00 0.00 1.98
204 205 1.792367 GTTGCATGAAAAAGGCGAACC 59.208 47.619 0.00 0.00 38.84 3.62
205 206 2.742774 AGTTGCATGAAAAAGGCGAAC 58.257 42.857 0.00 0.00 38.84 3.95
206 207 3.068024 AGAAGTTGCATGAAAAAGGCGAA 59.932 39.130 0.00 0.00 38.84 4.70
207 208 2.622942 AGAAGTTGCATGAAAAAGGCGA 59.377 40.909 0.00 0.00 38.84 5.54
208 209 3.017265 AGAAGTTGCATGAAAAAGGCG 57.983 42.857 0.00 0.00 38.84 5.52
209 210 6.843069 TTTTAGAAGTTGCATGAAAAAGGC 57.157 33.333 0.00 0.00 35.67 4.35
210 211 8.216453 CGAATTTTAGAAGTTGCATGAAAAAGG 58.784 33.333 0.00 0.00 0.00 3.11
211 212 8.216453 CCGAATTTTAGAAGTTGCATGAAAAAG 58.784 33.333 0.00 0.00 0.00 2.27
212 213 7.708752 ACCGAATTTTAGAAGTTGCATGAAAAA 59.291 29.630 0.00 0.00 0.00 1.94
213 214 7.168972 CACCGAATTTTAGAAGTTGCATGAAAA 59.831 33.333 0.00 0.00 0.00 2.29
214 215 6.640499 CACCGAATTTTAGAAGTTGCATGAAA 59.360 34.615 0.00 0.00 0.00 2.69
215 216 6.148948 CACCGAATTTTAGAAGTTGCATGAA 58.851 36.000 0.00 0.00 0.00 2.57
216 217 5.698832 CACCGAATTTTAGAAGTTGCATGA 58.301 37.500 0.00 0.00 0.00 3.07
217 218 4.324402 GCACCGAATTTTAGAAGTTGCATG 59.676 41.667 0.00 0.00 0.00 4.06
218 219 4.485163 GCACCGAATTTTAGAAGTTGCAT 58.515 39.130 0.00 0.00 0.00 3.96
219 220 3.305064 GGCACCGAATTTTAGAAGTTGCA 60.305 43.478 0.00 0.00 0.00 4.08
220 221 3.242518 GGCACCGAATTTTAGAAGTTGC 58.757 45.455 0.00 0.00 0.00 4.17
221 222 3.488489 CGGCACCGAATTTTAGAAGTTG 58.512 45.455 2.01 0.00 42.83 3.16
222 223 2.486592 CCGGCACCGAATTTTAGAAGTT 59.513 45.455 11.42 0.00 42.83 2.66
223 224 2.081462 CCGGCACCGAATTTTAGAAGT 58.919 47.619 11.42 0.00 42.83 3.01
224 225 2.081462 ACCGGCACCGAATTTTAGAAG 58.919 47.619 11.42 0.00 42.83 2.85
225 226 2.188062 ACCGGCACCGAATTTTAGAA 57.812 45.000 11.42 0.00 42.83 2.10
226 227 3.002102 GTTACCGGCACCGAATTTTAGA 58.998 45.455 11.42 0.00 42.83 2.10
227 228 2.096335 GGTTACCGGCACCGAATTTTAG 59.904 50.000 11.42 0.00 42.83 1.85
228 229 2.083002 GGTTACCGGCACCGAATTTTA 58.917 47.619 11.42 0.00 42.83 1.52
229 230 0.883153 GGTTACCGGCACCGAATTTT 59.117 50.000 11.42 0.00 42.83 1.82
230 231 0.250814 TGGTTACCGGCACCGAATTT 60.251 50.000 16.74 0.00 42.83 1.82
231 232 0.675522 CTGGTTACCGGCACCGAATT 60.676 55.000 16.74 0.00 42.83 2.17
232 233 1.078708 CTGGTTACCGGCACCGAAT 60.079 57.895 16.74 0.55 42.83 3.34
233 234 2.344500 CTGGTTACCGGCACCGAA 59.656 61.111 16.74 0.00 42.83 4.30
240 241 2.760159 CGGCATTGCTGGTTACCGG 61.760 63.158 9.73 5.73 37.04 5.28
241 242 2.791256 CGGCATTGCTGGTTACCG 59.209 61.111 9.73 0.00 0.00 4.02
256 257 1.815421 CAGAAAGATGCCCGTCCGG 60.815 63.158 0.00 0.00 0.00 5.14
257 258 0.174845 TACAGAAAGATGCCCGTCCG 59.825 55.000 0.00 0.00 0.00 4.79
258 259 1.207329 AGTACAGAAAGATGCCCGTCC 59.793 52.381 0.00 0.00 0.00 4.79
259 260 2.094182 TCAGTACAGAAAGATGCCCGTC 60.094 50.000 0.00 0.00 0.00 4.79
260 261 1.899814 TCAGTACAGAAAGATGCCCGT 59.100 47.619 0.00 0.00 0.00 5.28
261 262 2.271800 GTCAGTACAGAAAGATGCCCG 58.728 52.381 0.00 0.00 0.00 6.13
262 263 3.334583 TGTCAGTACAGAAAGATGCCC 57.665 47.619 0.00 0.00 0.00 5.36
263 264 3.064545 GCATGTCAGTACAGAAAGATGCC 59.935 47.826 13.17 2.07 39.49 4.40
264 265 3.686241 TGCATGTCAGTACAGAAAGATGC 59.314 43.478 15.61 15.61 39.49 3.91
265 266 5.173664 TCTGCATGTCAGTACAGAAAGATG 58.826 41.667 14.21 0.00 43.32 2.90
266 267 5.411831 TCTGCATGTCAGTACAGAAAGAT 57.588 39.130 14.21 0.00 43.32 2.40
267 268 4.871933 TCTGCATGTCAGTACAGAAAGA 57.128 40.909 14.21 0.00 43.32 2.52
268 269 4.391216 CCTTCTGCATGTCAGTACAGAAAG 59.609 45.833 14.21 10.15 45.63 2.62
269 270 4.202357 ACCTTCTGCATGTCAGTACAGAAA 60.202 41.667 14.21 0.00 45.63 2.52
270 271 3.324846 ACCTTCTGCATGTCAGTACAGAA 59.675 43.478 14.21 11.99 44.56 3.02
271 272 2.899900 ACCTTCTGCATGTCAGTACAGA 59.100 45.455 14.21 5.87 43.32 3.41
272 273 3.325293 ACCTTCTGCATGTCAGTACAG 57.675 47.619 14.21 3.80 43.32 2.74
273 274 3.664107 GAACCTTCTGCATGTCAGTACA 58.336 45.455 14.21 0.00 43.32 2.90
274 275 2.668457 CGAACCTTCTGCATGTCAGTAC 59.332 50.000 14.21 0.00 43.32 2.73
275 276 2.560981 TCGAACCTTCTGCATGTCAGTA 59.439 45.455 14.21 6.65 43.32 2.74
276 277 1.344438 TCGAACCTTCTGCATGTCAGT 59.656 47.619 14.21 0.00 43.32 3.41
277 278 1.998315 CTCGAACCTTCTGCATGTCAG 59.002 52.381 9.94 9.94 44.21 3.51
278 279 1.941209 GCTCGAACCTTCTGCATGTCA 60.941 52.381 0.00 0.00 0.00 3.58
279 280 0.723981 GCTCGAACCTTCTGCATGTC 59.276 55.000 0.00 0.00 0.00 3.06
280 281 0.674895 GGCTCGAACCTTCTGCATGT 60.675 55.000 0.00 0.00 0.00 3.21
281 282 0.674581 TGGCTCGAACCTTCTGCATG 60.675 55.000 6.39 0.00 0.00 4.06
282 283 0.674895 GTGGCTCGAACCTTCTGCAT 60.675 55.000 6.39 0.00 0.00 3.96
283 284 1.301716 GTGGCTCGAACCTTCTGCA 60.302 57.895 6.39 0.00 0.00 4.41
284 285 2.383527 CGTGGCTCGAACCTTCTGC 61.384 63.158 6.39 0.00 42.86 4.26
285 286 1.289066 TCGTGGCTCGAACCTTCTG 59.711 57.895 9.46 0.00 45.98 3.02
286 287 3.773370 TCGTGGCTCGAACCTTCT 58.227 55.556 9.46 0.00 45.98 2.85
294 295 4.506288 TGTATGATATTTGTTCGTGGCTCG 59.494 41.667 1.94 1.94 41.41 5.03
295 296 5.556382 CGTGTATGATATTTGTTCGTGGCTC 60.556 44.000 0.00 0.00 0.00 4.70
296 297 4.270084 CGTGTATGATATTTGTTCGTGGCT 59.730 41.667 0.00 0.00 0.00 4.75
297 298 4.033587 ACGTGTATGATATTTGTTCGTGGC 59.966 41.667 0.00 0.00 0.00 5.01
298 299 5.712217 ACGTGTATGATATTTGTTCGTGG 57.288 39.130 0.00 0.00 0.00 4.94
299 300 6.182634 GGAACGTGTATGATATTTGTTCGTG 58.817 40.000 0.00 0.00 36.11 4.35
300 301 5.870433 TGGAACGTGTATGATATTTGTTCGT 59.130 36.000 0.00 0.00 36.11 3.85
301 302 6.339194 TGGAACGTGTATGATATTTGTTCG 57.661 37.500 0.00 0.00 36.11 3.95
302 303 9.646336 GTTATGGAACGTGTATGATATTTGTTC 57.354 33.333 0.00 5.59 34.89 3.18
303 304 9.168451 TGTTATGGAACGTGTATGATATTTGTT 57.832 29.630 0.00 0.00 38.51 2.83
304 305 8.725405 TGTTATGGAACGTGTATGATATTTGT 57.275 30.769 0.00 0.00 38.51 2.83
305 306 7.798516 GCTGTTATGGAACGTGTATGATATTTG 59.201 37.037 0.00 0.00 38.51 2.32
306 307 7.497579 TGCTGTTATGGAACGTGTATGATATTT 59.502 33.333 0.00 0.00 38.51 1.40
307 308 6.989759 TGCTGTTATGGAACGTGTATGATATT 59.010 34.615 0.00 0.00 38.51 1.28
308 309 6.521162 TGCTGTTATGGAACGTGTATGATAT 58.479 36.000 0.00 0.00 38.51 1.63
309 310 5.908341 TGCTGTTATGGAACGTGTATGATA 58.092 37.500 0.00 0.00 38.51 2.15
310 311 4.765273 TGCTGTTATGGAACGTGTATGAT 58.235 39.130 0.00 0.00 38.51 2.45
311 312 4.180817 CTGCTGTTATGGAACGTGTATGA 58.819 43.478 0.00 0.00 38.51 2.15
312 313 3.309682 CCTGCTGTTATGGAACGTGTATG 59.690 47.826 0.00 0.00 38.51 2.39
313 314 3.055385 ACCTGCTGTTATGGAACGTGTAT 60.055 43.478 0.00 0.00 38.51 2.29
314 315 2.300723 ACCTGCTGTTATGGAACGTGTA 59.699 45.455 0.00 0.00 38.51 2.90
315 316 1.071699 ACCTGCTGTTATGGAACGTGT 59.928 47.619 0.00 0.00 38.51 4.49
316 317 1.464608 CACCTGCTGTTATGGAACGTG 59.535 52.381 0.00 0.00 38.51 4.49
317 318 1.346395 TCACCTGCTGTTATGGAACGT 59.654 47.619 0.00 0.00 38.51 3.99
318 319 2.093306 TCACCTGCTGTTATGGAACG 57.907 50.000 0.00 0.00 38.51 3.95
319 320 3.609853 TCATCACCTGCTGTTATGGAAC 58.390 45.455 0.00 0.00 30.89 3.62
320 321 3.998913 TCATCACCTGCTGTTATGGAA 57.001 42.857 0.00 0.00 30.89 3.53
321 322 3.370846 CCTTCATCACCTGCTGTTATGGA 60.371 47.826 0.00 0.00 30.89 3.41
322 323 2.947652 CCTTCATCACCTGCTGTTATGG 59.052 50.000 0.00 0.00 30.89 2.74
323 324 3.376234 CACCTTCATCACCTGCTGTTATG 59.624 47.826 0.00 0.00 31.13 1.90
324 325 3.614092 CACCTTCATCACCTGCTGTTAT 58.386 45.455 0.00 0.00 0.00 1.89
325 326 2.875672 GCACCTTCATCACCTGCTGTTA 60.876 50.000 0.00 0.00 0.00 2.41
326 327 1.901591 CACCTTCATCACCTGCTGTT 58.098 50.000 0.00 0.00 0.00 3.16
327 328 0.607489 GCACCTTCATCACCTGCTGT 60.607 55.000 0.00 0.00 0.00 4.40
328 329 1.310933 GGCACCTTCATCACCTGCTG 61.311 60.000 0.00 0.00 0.00 4.41
329 330 1.001641 GGCACCTTCATCACCTGCT 60.002 57.895 0.00 0.00 0.00 4.24
330 331 0.610232 AAGGCACCTTCATCACCTGC 60.610 55.000 0.00 0.00 0.00 4.85
331 332 3.658398 AAGGCACCTTCATCACCTG 57.342 52.632 0.00 0.00 0.00 4.00
355 356 1.694696 AGGTGGTCAGTGTTCTCTTCC 59.305 52.381 0.00 0.00 0.00 3.46
395 413 3.659089 ATCGCAGGTGCCCACGTAC 62.659 63.158 0.00 0.00 37.91 3.67
463 481 0.328592 TCCGCTGACTAGAGACACCT 59.671 55.000 0.00 0.00 0.00 4.00
589 608 7.227910 GGAGTTAACAAATGTGACCAAAGTAGA 59.772 37.037 8.61 0.00 0.00 2.59
593 612 5.528870 GGGAGTTAACAAATGTGACCAAAG 58.471 41.667 8.61 0.00 0.00 2.77
683 706 3.179265 GTGTCGATCGGTGCGGTG 61.179 66.667 16.41 0.00 0.00 4.94
684 707 3.215597 TTGTGTCGATCGGTGCGGT 62.216 57.895 16.41 0.00 0.00 5.68
685 708 2.431771 TTGTGTCGATCGGTGCGG 60.432 61.111 16.41 0.00 0.00 5.69
686 709 2.444624 CCTTGTGTCGATCGGTGCG 61.445 63.158 16.41 0.00 0.00 5.34
687 710 0.669318 TTCCTTGTGTCGATCGGTGC 60.669 55.000 16.41 6.78 0.00 5.01
690 714 1.068474 GTGTTCCTTGTGTCGATCGG 58.932 55.000 16.41 0.00 0.00 4.18
701 725 0.320247 CAGCTGAGCGAGTGTTCCTT 60.320 55.000 8.42 0.00 0.00 3.36
716 740 1.181786 GGACTACAGAGTGAGCAGCT 58.818 55.000 0.00 0.00 35.45 4.24
717 741 3.731295 GGACTACAGAGTGAGCAGC 57.269 57.895 0.00 0.00 35.45 5.25
970 994 1.257055 GGGACAGAGTGAGCAGCTCT 61.257 60.000 23.15 3.68 43.43 4.09
971 995 1.217779 GGGACAGAGTGAGCAGCTC 59.782 63.158 16.21 16.21 0.00 4.09
972 996 2.289532 GGGGACAGAGTGAGCAGCT 61.290 63.158 0.00 0.00 0.00 4.24
973 997 2.267324 GGGGACAGAGTGAGCAGC 59.733 66.667 0.00 0.00 0.00 5.25
974 998 1.821061 AACGGGGACAGAGTGAGCAG 61.821 60.000 0.00 0.00 0.00 4.24
975 999 1.837051 AACGGGGACAGAGTGAGCA 60.837 57.895 0.00 0.00 0.00 4.26
976 1000 1.374758 CAACGGGGACAGAGTGAGC 60.375 63.158 0.00 0.00 0.00 4.26
977 1001 0.319900 CACAACGGGGACAGAGTGAG 60.320 60.000 0.00 0.00 0.00 3.51
978 1002 0.757561 TCACAACGGGGACAGAGTGA 60.758 55.000 0.00 0.00 34.02 3.41
989 1013 0.726827 CCCGAACATGATCACAACGG 59.273 55.000 18.88 18.88 38.83 4.44
991 1015 1.135689 GTGCCCGAACATGATCACAAC 60.136 52.381 0.00 0.00 0.00 3.32
992 1016 1.164411 GTGCCCGAACATGATCACAA 58.836 50.000 0.00 0.00 0.00 3.33
993 1017 0.036022 TGTGCCCGAACATGATCACA 59.964 50.000 0.00 0.00 32.78 3.58
994 1018 1.131126 CTTGTGCCCGAACATGATCAC 59.869 52.381 0.00 0.00 0.00 3.06
995 1019 1.003003 TCTTGTGCCCGAACATGATCA 59.997 47.619 0.00 0.00 31.41 2.92
997 1021 2.086869 CTTCTTGTGCCCGAACATGAT 58.913 47.619 0.00 0.00 35.07 2.45
1170 1203 2.045438 TACTCGTCGCGGGGGTTA 60.045 61.111 6.13 0.00 0.00 2.85
1186 1219 0.244450 CCGAGTTTACGTGCCTGGTA 59.756 55.000 0.00 0.00 0.00 3.25
1199 1232 7.606456 ACAATGAAGTTATTGTATGACCGAGTT 59.394 33.333 2.56 0.00 46.40 3.01
1201 1234 7.539712 ACAATGAAGTTATTGTATGACCGAG 57.460 36.000 2.56 0.00 46.40 4.63
1212 1245 9.647797 TTCGTACAGTATGACAATGAAGTTATT 57.352 29.630 1.60 0.00 39.69 1.40
1213 1246 9.817809 ATTCGTACAGTATGACAATGAAGTTAT 57.182 29.630 1.60 0.00 39.69 1.89
1215 1248 7.817478 TCATTCGTACAGTATGACAATGAAGTT 59.183 33.333 12.17 0.00 39.69 2.66
1216 1249 7.320399 TCATTCGTACAGTATGACAATGAAGT 58.680 34.615 12.17 0.00 39.69 3.01
1219 1252 6.252655 CGTTCATTCGTACAGTATGACAATGA 59.747 38.462 11.08 11.08 39.69 2.57
1221 1254 6.097356 ACGTTCATTCGTACAGTATGACAAT 58.903 36.000 1.60 0.00 42.35 2.71
1222 1255 5.463286 ACGTTCATTCGTACAGTATGACAA 58.537 37.500 1.60 0.00 42.35 3.18
1223 1256 5.050644 ACGTTCATTCGTACAGTATGACA 57.949 39.130 1.60 0.00 42.35 3.58
1255 1291 2.362077 ACCCATGCAAAAGTGTCACTTC 59.638 45.455 18.42 7.26 37.47 3.01
1257 1293 2.071778 ACCCATGCAAAAGTGTCACT 57.928 45.000 0.00 0.00 0.00 3.41
1264 1300 0.950071 CGCCCAAACCCATGCAAAAG 60.950 55.000 0.00 0.00 0.00 2.27
1274 1328 4.347453 CAGTGCTGCGCCCAAACC 62.347 66.667 9.97 0.00 0.00 3.27
1277 1331 3.947459 TACCAGTGCTGCGCCCAA 61.947 61.111 9.97 0.00 0.00 4.12
1282 1336 1.005037 TCCTTGTACCAGTGCTGCG 60.005 57.895 0.00 0.00 0.00 5.18
1457 1676 1.215647 GTCGTTGCTCTCCGTCCAT 59.784 57.895 0.00 0.00 0.00 3.41
1802 2051 1.145377 GTACCCATACCCTGCACCG 59.855 63.158 0.00 0.00 0.00 4.94
1805 2054 2.737881 GCCGTACCCATACCCTGCA 61.738 63.158 0.00 0.00 0.00 4.41
1946 2195 4.022329 GTCCATTTCGTTTTCACCTGGAAT 60.022 41.667 0.00 0.00 34.91 3.01
1961 2320 6.683974 AGTTAGTATGTGCATGTCCATTTC 57.316 37.500 0.00 1.12 0.00 2.17
1982 2343 4.080356 TGGATTGATTCGGATGGAAGAAGT 60.080 41.667 0.00 0.00 38.24 3.01
2059 2426 1.464608 CACCCAGTGCTACATTTCGTG 59.535 52.381 0.00 0.00 0.00 4.35
2181 2548 1.746991 GCTTACAGGGTGGCTCTGC 60.747 63.158 0.00 0.00 35.78 4.26
2214 2581 7.123383 TGGATAGGAGAGAGTATGTGTTTGTA 58.877 38.462 0.00 0.00 0.00 2.41
2294 2663 7.671398 ACCAACTCACTTGAATTTAAGGATCAT 59.329 33.333 13.89 0.00 30.42 2.45
2297 2666 7.004086 TGACCAACTCACTTGAATTTAAGGAT 58.996 34.615 13.89 0.00 30.42 3.24
2312 2681 0.251297 CCCCTGCATTGACCAACTCA 60.251 55.000 0.00 0.00 0.00 3.41
2322 2691 2.419011 TACGTGCCAACCCCTGCATT 62.419 55.000 0.00 0.00 40.07 3.56
2341 2710 6.455360 TGGAAATCGTAAACGTAGATAGGT 57.545 37.500 2.02 0.00 40.80 3.08
2386 2764 4.154942 AGCAGGTGGAGAACAATTTCAAT 58.845 39.130 0.00 0.00 33.72 2.57
2387 2765 3.565307 AGCAGGTGGAGAACAATTTCAA 58.435 40.909 0.00 0.00 33.72 2.69
2388 2766 3.149196 GAGCAGGTGGAGAACAATTTCA 58.851 45.455 0.00 0.00 33.72 2.69
2390 2768 3.152341 CAGAGCAGGTGGAGAACAATTT 58.848 45.455 0.00 0.00 0.00 1.82
2392 2770 1.004044 CCAGAGCAGGTGGAGAACAAT 59.996 52.381 0.00 0.00 37.23 2.71
2393 2771 0.397941 CCAGAGCAGGTGGAGAACAA 59.602 55.000 0.00 0.00 37.23 2.83
2411 2821 1.852280 GCTGCAAACGTCTCAAAAACC 59.148 47.619 0.00 0.00 0.00 3.27
2734 3190 2.701951 ACAGGTTTAGAACGGTCAAGGA 59.298 45.455 1.87 0.00 0.00 3.36
2748 3204 1.774254 TGGTGATCAGTGGACAGGTTT 59.226 47.619 0.00 0.00 0.00 3.27
2950 5456 4.790962 ACCGCCCTGCAGCTCATG 62.791 66.667 8.66 0.00 0.00 3.07
2973 5479 6.093495 CCAGACGGCACTCAAAAGATAATTTA 59.907 38.462 0.00 0.00 0.00 1.40
2976 5482 3.941483 CCAGACGGCACTCAAAAGATAAT 59.059 43.478 0.00 0.00 0.00 1.28
3006 5512 1.018910 CACATGCGCATGGATCAAGA 58.981 50.000 43.46 7.30 42.91 3.02
3087 5596 8.400184 TGTACAGTACAGTCATACTACTTGTT 57.600 34.615 9.51 0.00 33.50 2.83
3098 5607 8.896320 ACAAACATAAATGTACAGTACAGTCA 57.104 30.769 18.30 2.85 42.77 3.41
3143 5889 1.078426 GCAGGACGGTGGCTTATGT 60.078 57.895 0.00 0.00 0.00 2.29
3201 5953 3.730761 GGCAGCTGACACTTGCCG 61.731 66.667 20.43 0.00 46.82 5.69
3208 5960 1.374947 GTAGGTTGGGCAGCTGACA 59.625 57.895 23.90 14.75 34.13 3.58
3363 6161 4.080526 AGGCGTTAAGAATTAGGACCATGT 60.081 41.667 0.00 0.00 0.00 3.21
3465 6275 3.066621 TGTCTAATGGCGGCAATTTCATC 59.933 43.478 18.31 4.46 0.00 2.92
3487 6297 1.937899 GCTTACCACGACGCCAATATT 59.062 47.619 0.00 0.00 0.00 1.28
3491 6301 2.735478 CGCTTACCACGACGCCAA 60.735 61.111 0.00 0.00 0.00 4.52
3510 6320 5.632347 GCAATCAAGTGTCCAGATTTTTCTG 59.368 40.000 0.00 0.00 37.48 3.02
3538 6353 5.105756 GGAGGTATTTCTGTGGATGGTTTTG 60.106 44.000 0.00 0.00 0.00 2.44
3546 6361 2.758979 GAGACGGAGGTATTTCTGTGGA 59.241 50.000 0.00 0.00 36.83 4.02
3573 6751 8.341173 CGACCTAGAACTACGTGAATAACTTAT 58.659 37.037 0.00 0.00 0.00 1.73
3574 6752 7.549134 TCGACCTAGAACTACGTGAATAACTTA 59.451 37.037 0.00 0.00 0.00 2.24
3575 6753 6.372659 TCGACCTAGAACTACGTGAATAACTT 59.627 38.462 0.00 0.00 0.00 2.66
3576 6754 5.877012 TCGACCTAGAACTACGTGAATAACT 59.123 40.000 0.00 0.00 0.00 2.24
3577 6755 5.962423 GTCGACCTAGAACTACGTGAATAAC 59.038 44.000 3.51 0.00 0.00 1.89
3578 6756 5.643348 TGTCGACCTAGAACTACGTGAATAA 59.357 40.000 14.12 0.00 0.00 1.40
3580 6758 4.005650 TGTCGACCTAGAACTACGTGAAT 58.994 43.478 14.12 0.00 0.00 2.57
3581 6759 3.402110 TGTCGACCTAGAACTACGTGAA 58.598 45.455 14.12 0.00 0.00 3.18
3582 6760 3.044235 TGTCGACCTAGAACTACGTGA 57.956 47.619 14.12 0.00 0.00 4.35
3583 6761 3.818961 TTGTCGACCTAGAACTACGTG 57.181 47.619 14.12 0.00 0.00 4.49
3584 6762 5.382618 AAATTGTCGACCTAGAACTACGT 57.617 39.130 14.12 0.00 0.00 3.57
3585 6763 7.025963 AGTTAAATTGTCGACCTAGAACTACG 58.974 38.462 14.12 0.00 0.00 3.51
3588 6766 9.939802 AAATAGTTAAATTGTCGACCTAGAACT 57.060 29.630 14.12 16.69 0.00 3.01
3648 6826 9.715121 AGATTTTTACACGGATGTAGTTTCTAA 57.285 29.630 0.00 0.00 42.29 2.10
3651 6829 9.148104 ACTAGATTTTTACACGGATGTAGTTTC 57.852 33.333 0.00 0.00 42.29 2.78
3654 6832 9.578439 GTTACTAGATTTTTACACGGATGTAGT 57.422 33.333 0.00 0.00 42.29 2.73
3655 6833 9.577110 TGTTACTAGATTTTTACACGGATGTAG 57.423 33.333 0.00 0.00 42.29 2.74
3656 6834 9.357652 GTGTTACTAGATTTTTACACGGATGTA 57.642 33.333 0.00 0.00 40.48 2.29
3657 6835 8.092687 AGTGTTACTAGATTTTTACACGGATGT 58.907 33.333 0.00 0.00 40.44 3.06
3658 6836 8.475331 AGTGTTACTAGATTTTTACACGGATG 57.525 34.615 0.00 0.00 40.44 3.51
3659 6837 9.578439 GTAGTGTTACTAGATTTTTACACGGAT 57.422 33.333 0.00 0.00 40.44 4.18
3660 6838 8.796475 AGTAGTGTTACTAGATTTTTACACGGA 58.204 33.333 0.00 0.00 38.35 4.69
3674 6852 6.259123 AGGCTTTTCCCTAGTAGTGTTACTA 58.741 40.000 0.00 0.00 39.80 1.82
3675 6853 5.092259 AGGCTTTTCCCTAGTAGTGTTACT 58.908 41.667 0.00 0.00 38.51 2.24
3677 6855 6.786967 CTAGGCTTTTCCCTAGTAGTGTTA 57.213 41.667 0.00 0.00 46.16 2.41
3678 6856 5.678955 CTAGGCTTTTCCCTAGTAGTGTT 57.321 43.478 0.00 0.00 46.16 3.32
3686 6864 1.210478 CTGCTGCTAGGCTTTTCCCTA 59.790 52.381 0.00 0.00 36.41 3.53
3687 6865 0.034670 CTGCTGCTAGGCTTTTCCCT 60.035 55.000 0.00 0.00 39.05 4.20
3688 6866 1.661498 GCTGCTGCTAGGCTTTTCCC 61.661 60.000 8.53 0.00 36.03 3.97
3689 6867 1.805910 GCTGCTGCTAGGCTTTTCC 59.194 57.895 8.53 0.00 36.03 3.13
3690 6868 1.427020 CGCTGCTGCTAGGCTTTTC 59.573 57.895 14.03 0.00 36.97 2.29
3691 6869 2.694760 GCGCTGCTGCTAGGCTTTT 61.695 57.895 14.03 0.00 36.97 2.27
3692 6870 3.130160 GCGCTGCTGCTAGGCTTT 61.130 61.111 14.03 0.00 36.97 3.51
3701 6879 2.887568 CTAGAACCCGCGCTGCTG 60.888 66.667 5.56 0.00 0.00 4.41
3703 6881 2.365095 ATACCTAGAACCCGCGCTGC 62.365 60.000 5.56 0.00 0.00 5.25
3704 6882 0.956633 TATACCTAGAACCCGCGCTG 59.043 55.000 5.56 0.00 0.00 5.18
3705 6883 1.817447 GATATACCTAGAACCCGCGCT 59.183 52.381 5.56 0.00 0.00 5.92
3706 6884 1.542915 TGATATACCTAGAACCCGCGC 59.457 52.381 0.00 0.00 0.00 6.86
3707 6885 2.818432 ACTGATATACCTAGAACCCGCG 59.182 50.000 0.00 0.00 0.00 6.46
3708 6886 4.142425 GCTACTGATATACCTAGAACCCGC 60.142 50.000 0.00 0.00 0.00 6.13
3712 6890 4.437121 CCGCGCTACTGATATACCTAGAAC 60.437 50.000 5.56 0.00 0.00 3.01
3713 6891 3.688185 CCGCGCTACTGATATACCTAGAA 59.312 47.826 5.56 0.00 0.00 2.10
3714 6892 3.268330 CCGCGCTACTGATATACCTAGA 58.732 50.000 5.56 0.00 0.00 2.43
3717 6895 1.540267 CACCGCGCTACTGATATACCT 59.460 52.381 5.56 0.00 0.00 3.08
3718 6896 1.402456 CCACCGCGCTACTGATATACC 60.402 57.143 5.56 0.00 0.00 2.73
3720 6898 0.242825 GCCACCGCGCTACTGATATA 59.757 55.000 5.56 0.00 0.00 0.86
3721 6899 1.006102 GCCACCGCGCTACTGATAT 60.006 57.895 5.56 0.00 0.00 1.63
3722 6900 2.415843 GCCACCGCGCTACTGATA 59.584 61.111 5.56 0.00 0.00 2.15
3723 6901 4.530857 GGCCACCGCGCTACTGAT 62.531 66.667 5.56 0.00 35.02 2.90
3734 6912 0.757935 TATCAGTAGGGTCGGCCACC 60.758 60.000 9.07 14.11 45.97 4.61
3735 6913 1.068741 CTTATCAGTAGGGTCGGCCAC 59.931 57.143 9.07 0.00 36.17 5.01
3736 6914 1.410004 CTTATCAGTAGGGTCGGCCA 58.590 55.000 9.07 0.00 36.17 5.36
3737 6915 0.680061 CCTTATCAGTAGGGTCGGCC 59.320 60.000 0.00 0.00 0.00 6.13
3738 6916 0.033642 GCCTTATCAGTAGGGTCGGC 59.966 60.000 0.00 0.00 33.19 5.54
3739 6917 0.314302 CGCCTTATCAGTAGGGTCGG 59.686 60.000 0.00 0.00 33.19 4.79
3741 6919 1.041437 AGCGCCTTATCAGTAGGGTC 58.959 55.000 2.29 0.00 33.19 4.46
3742 6920 1.962100 GTAGCGCCTTATCAGTAGGGT 59.038 52.381 2.29 0.00 33.19 4.34
3746 6924 2.795175 GCTGTAGCGCCTTATCAGTA 57.205 50.000 2.29 0.00 0.00 2.74
3747 6925 3.669354 GCTGTAGCGCCTTATCAGT 57.331 52.632 2.29 0.00 0.00 3.41
3763 6941 2.069273 CGTTGCTGCTACAGTTTAGCT 58.931 47.619 14.17 0.00 40.95 3.32
3764 6942 1.464189 GCGTTGCTGCTACAGTTTAGC 60.464 52.381 14.17 1.12 40.76 3.09
3765 6943 1.201812 CGCGTTGCTGCTACAGTTTAG 60.202 52.381 14.17 0.00 33.43 1.85
3766 6944 0.787787 CGCGTTGCTGCTACAGTTTA 59.212 50.000 14.17 0.00 33.43 2.01
3767 6945 1.157870 ACGCGTTGCTGCTACAGTTT 61.158 50.000 5.58 0.00 33.43 2.66
3768 6946 1.594293 ACGCGTTGCTGCTACAGTT 60.594 52.632 5.58 0.00 33.43 3.16
3769 6947 2.029073 ACGCGTTGCTGCTACAGT 59.971 55.556 5.58 10.07 33.43 3.55
3770 6948 2.310233 ACACGCGTTGCTGCTACAG 61.310 57.895 10.22 9.49 34.12 2.74
3771 6949 2.279851 ACACGCGTTGCTGCTACA 60.280 55.556 10.22 0.00 0.00 2.74
3772 6950 2.170985 CACACGCGTTGCTGCTAC 59.829 61.111 10.22 4.09 0.00 3.58
3773 6951 3.711842 GCACACGCGTTGCTGCTA 61.712 61.111 27.53 0.00 32.57 3.49
3776 6954 4.962122 GGTGCACACGCGTTGCTG 62.962 66.667 31.34 20.24 42.97 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.