Multiple sequence alignment - TraesCS2B01G118400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G118400 chr2B 100.000 3320 0 0 1 3320 82850679 82853998 0.000000e+00 6131.0
1 TraesCS2B01G118400 chr2B 88.758 2295 160 42 423 2677 82360712 82362948 0.000000e+00 2719.0
2 TraesCS2B01G118400 chr2B 88.014 1410 72 24 1102 2452 82714081 82715452 0.000000e+00 1578.0
3 TraesCS2B01G118400 chr2B 81.862 1847 184 66 883 2618 83955517 83953711 0.000000e+00 1415.0
4 TraesCS2B01G118400 chr2B 86.951 797 81 13 2 790 82712412 82713193 0.000000e+00 874.0
5 TraesCS2B01G118400 chr2B 86.709 158 16 4 2521 2677 82717655 82717808 1.580000e-38 171.0
6 TraesCS2B01G118400 chr2B 100.000 58 0 0 5 62 82360630 82360687 1.260000e-19 108.0
7 TraesCS2B01G118400 chr2B 78.472 144 26 2 2961 3104 82718474 82718612 4.560000e-14 89.8
8 TraesCS2B01G118400 chr2D 89.683 2772 163 38 1 2677 52851026 52853769 0.000000e+00 3421.0
9 TraesCS2B01G118400 chr2D 87.045 1814 111 40 949 2677 52646903 52648677 0.000000e+00 1934.0
10 TraesCS2B01G118400 chr2D 82.108 1755 178 49 965 2618 53648976 53650695 0.000000e+00 1376.0
11 TraesCS2B01G118400 chr2D 80.100 1005 135 39 836 1811 52959347 52960315 0.000000e+00 688.0
12 TraesCS2B01G118400 chr2D 86.458 480 45 11 420 890 52646415 52646883 2.950000e-140 508.0
13 TraesCS2B01G118400 chr2D 84.127 441 48 8 2752 3178 52853782 52854214 1.110000e-109 407.0
14 TraesCS2B01G118400 chr2D 87.179 234 20 6 63 292 52645794 52646021 1.180000e-64 257.0
15 TraesCS2B01G118400 chr2D 95.349 86 3 1 2671 2755 166582163 166582248 5.780000e-28 135.0
16 TraesCS2B01G118400 chr2D 96.250 80 3 0 2671 2750 402956060 402956139 7.470000e-27 132.0
17 TraesCS2B01G118400 chr2D 95.918 49 2 0 6 54 52645755 52645803 2.750000e-11 80.5
18 TraesCS2B01G118400 chr2A 84.593 2765 232 75 1 2677 54110918 54113576 0.000000e+00 2567.0
19 TraesCS2B01G118400 chr2A 86.248 2087 166 59 401 2437 54011746 54013761 0.000000e+00 2152.0
20 TraesCS2B01G118400 chr2A 81.660 1614 201 41 921 2452 54474196 54472596 0.000000e+00 1253.0
21 TraesCS2B01G118400 chr2A 81.621 876 124 20 952 1811 54139885 54140739 0.000000e+00 691.0
22 TraesCS2B01G118400 chr7B 98.750 80 1 0 2671 2750 480277702 480277781 3.450000e-30 143.0
23 TraesCS2B01G118400 chr4D 96.250 80 3 0 2671 2750 493943796 493943875 7.470000e-27 132.0
24 TraesCS2B01G118400 chr3A 93.333 90 5 1 2671 2759 92270654 92270743 7.470000e-27 132.0
25 TraesCS2B01G118400 chr7D 95.122 82 4 0 2671 2752 202023240 202023321 2.690000e-26 130.0
26 TraesCS2B01G118400 chr3D 90.526 95 8 1 2671 2764 492998800 492998706 1.250000e-24 124.0
27 TraesCS2B01G118400 chr3D 92.045 88 7 0 2671 2758 614910397 614910484 1.250000e-24 124.0
28 TraesCS2B01G118400 chr1A 85.321 109 15 1 2671 2779 455047593 455047700 9.740000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G118400 chr2B 82850679 82853998 3319 False 6131.000 6131 100.0000 1 3320 1 chr2B.!!$F1 3319
1 TraesCS2B01G118400 chr2B 83953711 83955517 1806 True 1415.000 1415 81.8620 883 2618 1 chr2B.!!$R1 1735
2 TraesCS2B01G118400 chr2B 82360630 82362948 2318 False 1413.500 2719 94.3790 5 2677 2 chr2B.!!$F2 2672
3 TraesCS2B01G118400 chr2B 82712412 82718612 6200 False 678.200 1578 85.0365 2 3104 4 chr2B.!!$F3 3102
4 TraesCS2B01G118400 chr2D 52851026 52854214 3188 False 1914.000 3421 86.9050 1 3178 2 chr2D.!!$F6 3177
5 TraesCS2B01G118400 chr2D 53648976 53650695 1719 False 1376.000 1376 82.1080 965 2618 1 chr2D.!!$F2 1653
6 TraesCS2B01G118400 chr2D 52645755 52648677 2922 False 694.875 1934 89.1500 6 2677 4 chr2D.!!$F5 2671
7 TraesCS2B01G118400 chr2D 52959347 52960315 968 False 688.000 688 80.1000 836 1811 1 chr2D.!!$F1 975
8 TraesCS2B01G118400 chr2A 54110918 54113576 2658 False 2567.000 2567 84.5930 1 2677 1 chr2A.!!$F2 2676
9 TraesCS2B01G118400 chr2A 54011746 54013761 2015 False 2152.000 2152 86.2480 401 2437 1 chr2A.!!$F1 2036
10 TraesCS2B01G118400 chr2A 54472596 54474196 1600 True 1253.000 1253 81.6600 921 2452 1 chr2A.!!$R1 1531
11 TraesCS2B01G118400 chr2A 54139885 54140739 854 False 691.000 691 81.6210 952 1811 1 chr2A.!!$F3 859

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 191 0.38386 CGTCGGCCGTTTTTCTGAAC 60.384 55.0 27.15 11.53 0.0 3.18 F
1590 2561 0.65784 GGCAAGATTCGATTGTCCCG 59.342 55.0 0.00 0.00 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1881 2992 1.153647 CATCGGCAGGTCAGCGTTA 60.154 57.895 0.0 0.0 34.64 3.18 R
3238 7011 0.035820 GACCCCCGCAGTGTAAATGA 60.036 55.000 0.0 0.0 30.28 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 2.319136 TTGTGCGTTGTTCAGTACCT 57.681 45.000 0.00 0.00 0.00 3.08
88 89 3.551454 CGTGTCCGGTTAGTGAGAAAAGA 60.551 47.826 0.00 0.00 0.00 2.52
100 101 6.857777 AGTGAGAAAAGAATCTTGACACTG 57.142 37.500 16.94 0.00 33.34 3.66
103 104 5.766670 TGAGAAAAGAATCTTGACACTGCAT 59.233 36.000 0.00 0.00 0.00 3.96
105 106 7.445096 TGAGAAAAGAATCTTGACACTGCATAA 59.555 33.333 0.00 0.00 0.00 1.90
106 107 8.169977 AGAAAAGAATCTTGACACTGCATAAA 57.830 30.769 0.00 0.00 0.00 1.40
107 108 8.632679 AGAAAAGAATCTTGACACTGCATAAAA 58.367 29.630 0.00 0.00 0.00 1.52
108 109 9.248291 GAAAAGAATCTTGACACTGCATAAAAA 57.752 29.630 0.00 0.00 0.00 1.94
180 191 0.383860 CGTCGGCCGTTTTTCTGAAC 60.384 55.000 27.15 11.53 0.00 3.18
224 235 2.159226 GCCTCGCTAGAAACAGCTAGAA 60.159 50.000 0.00 0.00 40.20 2.10
255 266 5.163982 GCTCGTTGTTACTGGTATCTTTCAC 60.164 44.000 0.00 0.00 0.00 3.18
311 322 1.235281 GGCCGCTCTTTTTCTCGGTT 61.235 55.000 0.00 0.00 43.45 4.44
329 340 3.426963 CGGTTACACACAAAAACAGCAGT 60.427 43.478 0.00 0.00 0.00 4.40
381 392 7.924412 ACCTAACGGTGTGTACATAATCATTAG 59.076 37.037 0.00 0.03 43.51 1.73
445 722 8.469309 AGCATTTATCATTAGCAGGTTAACAT 57.531 30.769 8.10 0.00 0.00 2.71
505 790 8.250332 GTCATTAGCAACCAAGGATTAAAATCA 58.750 33.333 5.15 0.00 37.15 2.57
515 800 7.178451 ACCAAGGATTAAAATCACGGAAGAAAT 59.822 33.333 5.15 0.00 37.15 2.17
527 812 4.963953 CACGGAAGAAATAATTTAGCAGCG 59.036 41.667 0.00 0.00 0.00 5.18
714 1011 4.010349 AGCAACCTATTAACACTTGAGGC 58.990 43.478 0.00 0.00 0.00 4.70
763 1060 4.127566 TGAGCGATTCATTCAGACATGA 57.872 40.909 0.00 0.00 0.00 3.07
926 1626 2.813754 CTCGATCTAGCTCTTCCTCCTG 59.186 54.545 0.00 0.00 0.00 3.86
984 1695 2.808567 GCAAGGCAAGCTAGTAGATCCC 60.809 54.545 0.00 0.00 0.00 3.85
1034 1750 1.070445 CGGTGATGGATCTGGAGGC 59.930 63.158 0.00 0.00 0.00 4.70
1217 2165 2.424246 GTGAGTGCAGTACTACTCCTCC 59.576 54.545 18.82 7.17 41.99 4.30
1321 2289 1.261619 GTGGTTCTTCTTCGTGCACAG 59.738 52.381 18.64 7.81 0.00 3.66
1590 2561 0.657840 GGCAAGATTCGATTGTCCCG 59.342 55.000 0.00 0.00 0.00 5.14
1591 2562 0.657840 GCAAGATTCGATTGTCCCGG 59.342 55.000 0.00 0.00 0.00 5.73
1592 2563 0.657840 CAAGATTCGATTGTCCCGGC 59.342 55.000 0.00 0.00 0.00 6.13
1688 2702 4.223964 GTCGCGCTCCCGATTTGC 62.224 66.667 5.56 0.00 39.67 3.68
1689 2703 4.451150 TCGCGCTCCCGATTTGCT 62.451 61.111 5.56 0.00 36.29 3.91
1693 2707 2.009888 CGCTCCCGATTTGCTTCTC 58.990 57.895 0.00 0.00 36.29 2.87
1707 2741 7.746475 CGATTTGCTTCTCGTTTCTTATTCTTT 59.254 33.333 0.00 0.00 0.00 2.52
1787 2826 2.558359 GGGTGATCAACAAAGACTTGGG 59.442 50.000 13.90 0.00 36.82 4.12
1860 2929 3.570975 TGCTCAACAATGATGACTTGCTT 59.429 39.130 5.22 0.00 34.37 3.91
1881 2992 3.760035 AACGCCGACCTGCTCGAT 61.760 61.111 0.00 0.00 46.14 3.59
2039 3162 1.093159 CAGATGCAGAGCCCAAACTC 58.907 55.000 0.00 0.00 36.91 3.01
2166 3298 1.432657 GGAGGTAGCGTCTTCGTCC 59.567 63.158 8.54 8.54 39.49 4.79
2370 3513 1.070134 AGCGTCTCAGTTTGCTGGTAA 59.930 47.619 0.00 0.00 42.78 2.85
2408 3558 3.056304 GGTTGATGCTAGCTCTTCGATC 58.944 50.000 17.23 9.73 0.00 3.69
2443 3597 9.860898 GCTTCATTAACTTTGATTAAGGATTGT 57.139 29.630 0.00 0.00 35.45 2.71
2455 3609 8.877864 TGATTAAGGATTGTGTTCATTAAGGT 57.122 30.769 0.00 0.00 35.91 3.50
2459 3634 7.881775 AAGGATTGTGTTCATTAAGGTATCC 57.118 36.000 0.00 0.00 0.00 2.59
2461 3636 7.056635 AGGATTGTGTTCATTAAGGTATCCTG 58.943 38.462 0.00 0.00 38.28 3.86
2532 5834 6.587273 AGGGAGTGCTGATTAATCTTAGAAC 58.413 40.000 16.24 10.68 0.00 3.01
2590 5895 7.368198 TGTACATAGTTACCTGATTGCCATA 57.632 36.000 0.00 0.00 0.00 2.74
2672 5985 3.253921 TGTGTGTTGATGGAGCTGAATTG 59.746 43.478 0.00 0.00 0.00 2.32
2677 5990 3.726557 TGATGGAGCTGAATTGTTCCT 57.273 42.857 0.00 0.00 38.04 3.36
2678 5991 4.038271 TGATGGAGCTGAATTGTTCCTT 57.962 40.909 0.00 0.00 38.04 3.36
2679 5992 3.760151 TGATGGAGCTGAATTGTTCCTTG 59.240 43.478 0.00 0.00 38.04 3.61
2681 5994 3.565307 TGGAGCTGAATTGTTCCTTGTT 58.435 40.909 0.00 0.00 38.04 2.83
2682 5995 3.318839 TGGAGCTGAATTGTTCCTTGTTG 59.681 43.478 0.00 0.00 38.04 3.33
2683 5996 3.311966 GAGCTGAATTGTTCCTTGTTGC 58.688 45.455 0.00 0.00 0.00 4.17
2684 5997 2.961062 AGCTGAATTGTTCCTTGTTGCT 59.039 40.909 0.00 0.00 0.00 3.91
2686 5999 4.022849 AGCTGAATTGTTCCTTGTTGCTAC 60.023 41.667 0.00 0.00 0.00 3.58
2687 6000 4.798574 CTGAATTGTTCCTTGTTGCTACC 58.201 43.478 0.00 0.00 0.00 3.18
2689 6002 4.892934 TGAATTGTTCCTTGTTGCTACCTT 59.107 37.500 0.00 0.00 0.00 3.50
2690 6003 4.853924 ATTGTTCCTTGTTGCTACCTTG 57.146 40.909 0.00 0.00 0.00 3.61
2691 6004 3.290948 TGTTCCTTGTTGCTACCTTGT 57.709 42.857 0.00 0.00 0.00 3.16
2692 6005 3.626930 TGTTCCTTGTTGCTACCTTGTT 58.373 40.909 0.00 0.00 0.00 2.83
2693 6006 4.020543 TGTTCCTTGTTGCTACCTTGTTT 58.979 39.130 0.00 0.00 0.00 2.83
2694 6007 4.142271 TGTTCCTTGTTGCTACCTTGTTTG 60.142 41.667 0.00 0.00 0.00 2.93
2695 6008 3.626930 TCCTTGTTGCTACCTTGTTTGT 58.373 40.909 0.00 0.00 0.00 2.83
2696 6009 3.380004 TCCTTGTTGCTACCTTGTTTGTG 59.620 43.478 0.00 0.00 0.00 3.33
2697 6010 3.490761 CCTTGTTGCTACCTTGTTTGTGG 60.491 47.826 0.00 0.00 0.00 4.17
2698 6011 2.028130 TGTTGCTACCTTGTTTGTGGG 58.972 47.619 0.00 0.00 0.00 4.61
2699 6012 2.303175 GTTGCTACCTTGTTTGTGGGA 58.697 47.619 0.00 0.00 0.00 4.37
2700 6013 2.270352 TGCTACCTTGTTTGTGGGAG 57.730 50.000 0.00 0.00 37.35 4.30
2702 6015 2.568623 CTACCTTGTTTGTGGGAGCT 57.431 50.000 0.00 0.00 0.00 4.09
2703 6016 2.863809 CTACCTTGTTTGTGGGAGCTT 58.136 47.619 0.00 0.00 0.00 3.74
2704 6017 4.015872 CTACCTTGTTTGTGGGAGCTTA 57.984 45.455 0.00 0.00 0.00 3.09
2705 6018 2.863809 ACCTTGTTTGTGGGAGCTTAG 58.136 47.619 0.00 0.00 0.00 2.18
2706 6019 2.441750 ACCTTGTTTGTGGGAGCTTAGA 59.558 45.455 0.00 0.00 0.00 2.10
2707 6020 3.074538 ACCTTGTTTGTGGGAGCTTAGAT 59.925 43.478 0.00 0.00 0.00 1.98
2708 6021 4.288626 ACCTTGTTTGTGGGAGCTTAGATA 59.711 41.667 0.00 0.00 0.00 1.98
2709 6022 5.044846 ACCTTGTTTGTGGGAGCTTAGATAT 60.045 40.000 0.00 0.00 0.00 1.63
2710 6023 5.297776 CCTTGTTTGTGGGAGCTTAGATATG 59.702 44.000 0.00 0.00 0.00 1.78
2711 6024 5.692115 TGTTTGTGGGAGCTTAGATATGA 57.308 39.130 0.00 0.00 0.00 2.15
2712 6025 5.428253 TGTTTGTGGGAGCTTAGATATGAC 58.572 41.667 0.00 0.00 0.00 3.06
2713 6026 5.045942 TGTTTGTGGGAGCTTAGATATGACA 60.046 40.000 0.00 0.00 0.00 3.58
2714 6027 5.894298 TTGTGGGAGCTTAGATATGACAT 57.106 39.130 0.00 0.00 0.00 3.06
2715 6028 5.474578 TGTGGGAGCTTAGATATGACATC 57.525 43.478 0.00 0.00 0.00 3.06
2716 6029 4.284490 TGTGGGAGCTTAGATATGACATCC 59.716 45.833 0.00 0.00 0.00 3.51
2717 6030 4.530161 GTGGGAGCTTAGATATGACATCCT 59.470 45.833 0.00 0.00 0.00 3.24
2718 6031 5.012561 GTGGGAGCTTAGATATGACATCCTT 59.987 44.000 0.00 0.00 0.00 3.36
2719 6032 6.211584 GTGGGAGCTTAGATATGACATCCTTA 59.788 42.308 0.00 0.00 0.00 2.69
2720 6033 6.438741 TGGGAGCTTAGATATGACATCCTTAG 59.561 42.308 0.00 0.00 0.00 2.18
2721 6034 6.665680 GGGAGCTTAGATATGACATCCTTAGA 59.334 42.308 0.00 0.00 0.00 2.10
2722 6035 7.179338 GGGAGCTTAGATATGACATCCTTAGAA 59.821 40.741 0.00 0.00 0.00 2.10
2723 6036 8.589338 GGAGCTTAGATATGACATCCTTAGAAA 58.411 37.037 0.00 0.00 0.00 2.52
2724 6037 9.988815 GAGCTTAGATATGACATCCTTAGAAAA 57.011 33.333 0.00 0.00 0.00 2.29
2725 6038 9.771534 AGCTTAGATATGACATCCTTAGAAAAC 57.228 33.333 0.00 0.00 0.00 2.43
2726 6039 9.547753 GCTTAGATATGACATCCTTAGAAAACA 57.452 33.333 0.00 0.00 0.00 2.83
2734 6047 9.775854 ATGACATCCTTAGAAAACATCTAGATG 57.224 33.333 27.63 27.63 42.94 2.90
2793 6106 2.682352 CGTACATGCCATGGTTGATTCA 59.318 45.455 19.78 6.85 33.60 2.57
2799 6119 1.064017 GCCATGGTTGATTCAGGGGTA 60.064 52.381 14.67 0.00 36.66 3.69
2801 6121 3.490348 CCATGGTTGATTCAGGGGTATC 58.510 50.000 2.57 0.00 32.96 2.24
2835 6464 6.660521 ACGGTACCATCCTATAATCACGATTA 59.339 38.462 13.54 2.12 37.64 1.75
2836 6465 7.148120 ACGGTACCATCCTATAATCACGATTAG 60.148 40.741 13.54 0.00 36.79 1.73
2847 6476 0.243907 CACGATTAGCGATCCCCGAT 59.756 55.000 0.00 0.00 44.57 4.18
2848 6477 0.966920 ACGATTAGCGATCCCCGATT 59.033 50.000 0.00 0.00 44.57 3.34
2850 6479 1.336887 CGATTAGCGATCCCCGATTGT 60.337 52.381 0.00 0.00 44.57 2.71
2856 6485 1.714794 CGATCCCCGATTGTAGATGC 58.285 55.000 0.00 0.00 41.76 3.91
2864 6493 3.191669 CCGATTGTAGATGCGTTTACCA 58.808 45.455 4.30 0.00 0.00 3.25
2881 6510 7.022384 CGTTTACCAAGCAAAATATACCGAAA 58.978 34.615 0.00 0.00 0.00 3.46
2882 6511 7.007636 CGTTTACCAAGCAAAATATACCGAAAC 59.992 37.037 0.00 0.00 0.00 2.78
2883 6512 4.976987 ACCAAGCAAAATATACCGAAACG 58.023 39.130 0.00 0.00 0.00 3.60
2920 6568 1.346395 AGGTGCATTGTAGTTCCGTCA 59.654 47.619 0.00 0.00 0.00 4.35
2939 6587 4.382040 CGTCACATTCCTTGTAGAGGTCAT 60.382 45.833 0.00 0.00 46.39 3.06
2968 6734 9.914923 GTTTCATTTTCCTACATTTTTGTTCAC 57.085 29.630 0.00 0.00 0.00 3.18
2974 6740 7.883391 TTCCTACATTTTTGTTCACTGGTTA 57.117 32.000 0.00 0.00 0.00 2.85
3005 6771 2.186125 GCCCCGGTTTCTCTACGG 59.814 66.667 0.00 0.00 46.79 4.02
3013 6779 5.009854 CCGGTTTCTCTACGGGTTTATTA 57.990 43.478 0.00 0.00 43.69 0.98
3045 6811 3.983044 AAGTAGTGGTCAGGATGGTTC 57.017 47.619 0.00 0.00 36.16 3.62
3069 6835 1.344942 CTGCGAGTAGTTCCACGTGC 61.345 60.000 10.91 0.00 0.00 5.34
3075 6841 3.391049 GAGTAGTTCCACGTGCTTTTCT 58.609 45.455 10.91 6.16 0.00 2.52
3107 6873 8.316214 AGGTCGTCTGTTTAATTTATCTACCAA 58.684 33.333 0.00 0.00 0.00 3.67
3161 6934 0.522626 TGTTTCGATCGCACGACCTA 59.477 50.000 11.09 0.00 41.97 3.08
3164 6937 2.675767 TTCGATCGCACGACCTATAC 57.324 50.000 11.09 0.00 41.97 1.47
3165 6938 1.585297 TCGATCGCACGACCTATACA 58.415 50.000 11.09 0.00 37.37 2.29
3166 6939 1.941975 TCGATCGCACGACCTATACAA 59.058 47.619 11.09 0.00 37.37 2.41
3178 6951 4.023450 CGACCTATACAACATTAGCGGAGA 60.023 45.833 0.00 0.00 0.00 3.71
3179 6952 5.335740 CGACCTATACAACATTAGCGGAGAT 60.336 44.000 0.00 0.00 0.00 2.75
3180 6953 6.128090 CGACCTATACAACATTAGCGGAGATA 60.128 42.308 0.00 0.00 0.00 1.98
3181 6954 7.415318 CGACCTATACAACATTAGCGGAGATAT 60.415 40.741 0.00 0.00 0.00 1.63
3182 6955 8.818622 ACCTATACAACATTAGCGGAGATATA 57.181 34.615 0.00 0.00 0.00 0.86
3183 6956 9.422681 ACCTATACAACATTAGCGGAGATATAT 57.577 33.333 0.00 0.00 0.00 0.86
3188 6961 6.986817 ACAACATTAGCGGAGATATATATGGC 59.013 38.462 0.00 0.00 0.00 4.40
3189 6962 6.731292 ACATTAGCGGAGATATATATGGCA 57.269 37.500 0.00 0.00 0.00 4.92
3190 6963 7.124573 ACATTAGCGGAGATATATATGGCAA 57.875 36.000 0.00 0.00 0.00 4.52
3191 6964 7.212976 ACATTAGCGGAGATATATATGGCAAG 58.787 38.462 0.00 0.00 0.00 4.01
3192 6965 4.065321 AGCGGAGATATATATGGCAAGC 57.935 45.455 0.00 0.02 0.00 4.01
3193 6966 3.708631 AGCGGAGATATATATGGCAAGCT 59.291 43.478 0.00 2.27 0.00 3.74
3194 6967 3.806521 GCGGAGATATATATGGCAAGCTG 59.193 47.826 0.00 0.00 0.00 4.24
3195 6968 4.375272 CGGAGATATATATGGCAAGCTGG 58.625 47.826 0.00 0.00 0.00 4.85
3196 6969 4.712476 GGAGATATATATGGCAAGCTGGG 58.288 47.826 0.00 0.00 0.00 4.45
3197 6970 4.164988 GGAGATATATATGGCAAGCTGGGT 59.835 45.833 0.00 0.00 0.00 4.51
3198 6971 5.108187 AGATATATATGGCAAGCTGGGTG 57.892 43.478 0.00 0.00 0.00 4.61
3199 6972 2.592102 ATATATGGCAAGCTGGGTGG 57.408 50.000 0.00 0.00 0.00 4.61
3200 6973 0.478072 TATATGGCAAGCTGGGTGGG 59.522 55.000 0.00 0.00 0.00 4.61
3201 6974 2.934363 ATATGGCAAGCTGGGTGGGC 62.934 60.000 0.00 0.00 0.00 5.36
3205 6978 4.601794 CAAGCTGGGTGGGCCACA 62.602 66.667 35.69 17.42 35.86 4.17
3206 6979 3.593680 AAGCTGGGTGGGCCACAT 61.594 61.111 35.69 14.48 35.86 3.21
3207 6980 3.892104 AAGCTGGGTGGGCCACATG 62.892 63.158 35.69 24.57 35.86 3.21
3209 6982 3.983420 CTGGGTGGGCCACATGGT 61.983 66.667 35.69 0.00 35.86 3.55
3210 6983 3.944250 CTGGGTGGGCCACATGGTC 62.944 68.421 35.69 19.02 39.63 4.02
3211 6984 3.978193 GGGTGGGCCACATGGTCA 61.978 66.667 35.69 0.00 42.93 4.02
3212 6985 2.117206 GGTGGGCCACATGGTCAA 59.883 61.111 35.69 0.00 42.93 3.18
3213 6986 1.532794 GGTGGGCCACATGGTCAAA 60.533 57.895 35.69 0.00 42.93 2.69
3214 6987 0.904394 GGTGGGCCACATGGTCAAAT 60.904 55.000 35.69 0.00 42.93 2.32
3215 6988 0.975887 GTGGGCCACATGGTCAAATT 59.024 50.000 31.26 0.00 42.93 1.82
3216 6989 1.347378 GTGGGCCACATGGTCAAATTT 59.653 47.619 31.26 0.00 42.93 1.82
3217 6990 1.347050 TGGGCCACATGGTCAAATTTG 59.653 47.619 12.15 12.15 42.93 2.32
3218 6991 1.441738 GGCCACATGGTCAAATTTGC 58.558 50.000 13.54 8.47 40.23 3.68
3219 6992 1.002315 GGCCACATGGTCAAATTTGCT 59.998 47.619 13.54 0.00 40.23 3.91
3220 6993 2.340337 GCCACATGGTCAAATTTGCTC 58.660 47.619 13.54 8.66 37.57 4.26
3221 6994 2.028748 GCCACATGGTCAAATTTGCTCT 60.029 45.455 13.54 0.00 37.57 4.09
3222 6995 3.841643 CCACATGGTCAAATTTGCTCTC 58.158 45.455 13.54 4.07 0.00 3.20
3223 6996 3.256383 CCACATGGTCAAATTTGCTCTCA 59.744 43.478 13.54 8.74 0.00 3.27
3224 6997 4.232221 CACATGGTCAAATTTGCTCTCAC 58.768 43.478 13.54 5.91 0.00 3.51
3225 6998 3.890756 ACATGGTCAAATTTGCTCTCACA 59.109 39.130 13.54 6.12 0.00 3.58
3226 6999 3.988379 TGGTCAAATTTGCTCTCACAC 57.012 42.857 13.54 4.50 0.00 3.82
3227 7000 2.622942 TGGTCAAATTTGCTCTCACACC 59.377 45.455 13.54 13.45 0.00 4.16
3228 7001 2.887152 GGTCAAATTTGCTCTCACACCT 59.113 45.455 13.54 0.00 0.00 4.00
3229 7002 3.057946 GGTCAAATTTGCTCTCACACCTC 60.058 47.826 13.54 0.00 0.00 3.85
3230 7003 2.807967 TCAAATTTGCTCTCACACCTCG 59.192 45.455 13.54 0.00 0.00 4.63
3231 7004 1.160137 AATTTGCTCTCACACCTCGC 58.840 50.000 0.00 0.00 0.00 5.03
3232 7005 0.322975 ATTTGCTCTCACACCTCGCT 59.677 50.000 0.00 0.00 0.00 4.93
3233 7006 0.601046 TTTGCTCTCACACCTCGCTG 60.601 55.000 0.00 0.00 0.00 5.18
3234 7007 1.463553 TTGCTCTCACACCTCGCTGA 61.464 55.000 0.00 0.00 0.00 4.26
3235 7008 1.253593 TGCTCTCACACCTCGCTGAT 61.254 55.000 0.00 0.00 0.00 2.90
3236 7009 0.108424 GCTCTCACACCTCGCTGATT 60.108 55.000 0.00 0.00 0.00 2.57
3237 7010 1.674221 GCTCTCACACCTCGCTGATTT 60.674 52.381 0.00 0.00 0.00 2.17
3238 7011 2.693069 CTCTCACACCTCGCTGATTTT 58.307 47.619 0.00 0.00 0.00 1.82
3239 7012 2.670414 CTCTCACACCTCGCTGATTTTC 59.330 50.000 0.00 0.00 0.00 2.29
3240 7013 2.037121 TCTCACACCTCGCTGATTTTCA 59.963 45.455 0.00 0.00 0.00 2.69
3241 7014 3.005554 CTCACACCTCGCTGATTTTCAT 58.994 45.455 0.00 0.00 0.00 2.57
3242 7015 3.411446 TCACACCTCGCTGATTTTCATT 58.589 40.909 0.00 0.00 0.00 2.57
3243 7016 3.820467 TCACACCTCGCTGATTTTCATTT 59.180 39.130 0.00 0.00 0.00 2.32
3244 7017 5.000591 TCACACCTCGCTGATTTTCATTTA 58.999 37.500 0.00 0.00 0.00 1.40
3245 7018 5.088739 CACACCTCGCTGATTTTCATTTAC 58.911 41.667 0.00 0.00 0.00 2.01
3246 7019 4.759693 ACACCTCGCTGATTTTCATTTACA 59.240 37.500 0.00 0.00 0.00 2.41
3247 7020 5.088739 CACCTCGCTGATTTTCATTTACAC 58.911 41.667 0.00 0.00 0.00 2.90
3248 7021 5.003804 ACCTCGCTGATTTTCATTTACACT 58.996 37.500 0.00 0.00 0.00 3.55
3249 7022 5.106555 ACCTCGCTGATTTTCATTTACACTG 60.107 40.000 0.00 0.00 0.00 3.66
3250 7023 4.722194 TCGCTGATTTTCATTTACACTGC 58.278 39.130 0.00 0.00 0.00 4.40
3251 7024 3.539563 CGCTGATTTTCATTTACACTGCG 59.460 43.478 0.00 0.00 37.70 5.18
3252 7025 3.853671 GCTGATTTTCATTTACACTGCGG 59.146 43.478 0.00 0.00 0.00 5.69
3253 7026 4.414852 CTGATTTTCATTTACACTGCGGG 58.585 43.478 0.00 0.00 0.00 6.13
3254 7027 3.192422 TGATTTTCATTTACACTGCGGGG 59.808 43.478 0.00 0.00 0.00 5.73
3255 7028 1.540267 TTTCATTTACACTGCGGGGG 58.460 50.000 0.00 0.00 0.00 5.40
3256 7029 0.402504 TTCATTTACACTGCGGGGGT 59.597 50.000 0.00 0.00 0.00 4.95
3257 7030 0.035820 TCATTTACACTGCGGGGGTC 60.036 55.000 0.00 0.00 0.00 4.46
3258 7031 0.322098 CATTTACACTGCGGGGGTCA 60.322 55.000 0.00 0.00 0.00 4.02
3259 7032 0.322187 ATTTACACTGCGGGGGTCAC 60.322 55.000 0.00 0.00 0.00 3.67
3260 7033 1.697082 TTTACACTGCGGGGGTCACA 61.697 55.000 0.00 0.00 0.00 3.58
3261 7034 1.697082 TTACACTGCGGGGGTCACAA 61.697 55.000 0.00 0.00 0.00 3.33
3262 7035 2.386064 TACACTGCGGGGGTCACAAC 62.386 60.000 0.00 0.00 0.00 3.32
3263 7036 4.265056 ACTGCGGGGGTCACAACC 62.265 66.667 0.00 0.00 45.65 3.77
3272 7045 2.868253 GGTCACAACCCATGTAGCC 58.132 57.895 0.00 0.00 41.46 3.93
3273 7046 0.328258 GGTCACAACCCATGTAGCCT 59.672 55.000 0.00 0.00 41.46 4.58
3274 7047 1.271926 GGTCACAACCCATGTAGCCTT 60.272 52.381 0.00 0.00 41.46 4.35
3275 7048 1.812571 GTCACAACCCATGTAGCCTTG 59.187 52.381 0.00 0.00 41.46 3.61
3276 7049 0.527565 CACAACCCATGTAGCCTTGC 59.472 55.000 0.00 0.00 41.46 4.01
3277 7050 0.405585 ACAACCCATGTAGCCTTGCT 59.594 50.000 0.00 0.00 41.63 3.91
3278 7051 0.813184 CAACCCATGTAGCCTTGCTG 59.187 55.000 0.00 0.00 40.10 4.41
3279 7052 0.405585 AACCCATGTAGCCTTGCTGT 59.594 50.000 0.00 0.00 40.10 4.40
3280 7053 1.285280 ACCCATGTAGCCTTGCTGTA 58.715 50.000 0.00 0.00 40.10 2.74
3281 7054 1.210478 ACCCATGTAGCCTTGCTGTAG 59.790 52.381 0.00 0.00 40.10 2.74
3282 7055 1.303309 CCATGTAGCCTTGCTGTAGC 58.697 55.000 0.00 0.00 40.10 3.58
3283 7056 1.134280 CCATGTAGCCTTGCTGTAGCT 60.134 52.381 5.38 0.00 40.10 3.32
3284 7057 2.208431 CATGTAGCCTTGCTGTAGCTC 58.792 52.381 5.38 0.00 40.10 4.09
3285 7058 0.537188 TGTAGCCTTGCTGTAGCTCC 59.463 55.000 5.38 0.00 40.10 4.70
3286 7059 0.528684 GTAGCCTTGCTGTAGCTCCG 60.529 60.000 5.38 0.00 40.10 4.63
3287 7060 2.298158 TAGCCTTGCTGTAGCTCCGC 62.298 60.000 5.38 3.86 40.10 5.54
3288 7061 2.512515 CCTTGCTGTAGCTCCGCC 60.513 66.667 5.38 0.00 42.66 6.13
3289 7062 2.512515 CTTGCTGTAGCTCCGCCC 60.513 66.667 5.38 0.00 42.66 6.13
3290 7063 4.096003 TTGCTGTAGCTCCGCCCC 62.096 66.667 5.38 0.00 42.66 5.80
3318 7091 6.904498 CGAAGGAGTATAGAGGAATACAGTG 58.096 44.000 0.00 0.00 35.23 3.66
3319 7092 6.711194 CGAAGGAGTATAGAGGAATACAGTGA 59.289 42.308 0.00 0.00 35.23 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 1.536766 CTCACTAACCGGACACGTACA 59.463 52.381 9.46 0.00 38.78 2.90
107 108 4.148838 TGTCGAATGGAGGGTCAATTTTT 58.851 39.130 0.00 0.00 0.00 1.94
108 109 3.761897 TGTCGAATGGAGGGTCAATTTT 58.238 40.909 0.00 0.00 0.00 1.82
109 110 3.433306 TGTCGAATGGAGGGTCAATTT 57.567 42.857 0.00 0.00 0.00 1.82
110 111 3.081804 GTTGTCGAATGGAGGGTCAATT 58.918 45.455 0.00 0.00 0.00 2.32
111 112 2.711542 GTTGTCGAATGGAGGGTCAAT 58.288 47.619 0.00 0.00 0.00 2.57
114 115 1.359459 GCGTTGTCGAATGGAGGGTC 61.359 60.000 0.00 0.00 39.71 4.46
121 122 1.416049 CGGTCTGCGTTGTCGAATG 59.584 57.895 0.00 0.00 39.71 2.67
180 191 2.357009 GTCCATATGCAGCCACAGAAAG 59.643 50.000 0.00 0.00 0.00 2.62
224 235 3.054878 CCAGTAACAACGAGCGTTAACT 58.945 45.455 8.03 9.28 36.46 2.24
255 266 0.319211 TTCCACTTGTACAGTCGCCG 60.319 55.000 0.00 0.00 30.92 6.46
311 322 3.753797 TGTCACTGCTGTTTTTGTGTGTA 59.246 39.130 0.00 0.00 0.00 2.90
381 392 4.201910 ACACACATACACAGAGTTTGTTGC 60.202 41.667 0.00 0.00 39.88 4.17
445 722 5.414454 GGATAAGCACTGTGTAATCACCAAA 59.586 40.000 9.86 0.00 43.26 3.28
470 747 5.222079 TGGTTGCTAATGACACTACTTCA 57.778 39.130 0.00 0.00 0.00 3.02
505 790 4.035208 CCGCTGCTAAATTATTTCTTCCGT 59.965 41.667 0.00 0.00 0.00 4.69
515 800 3.287222 AGCATTTCCCGCTGCTAAATTA 58.713 40.909 0.00 0.00 46.49 1.40
524 809 0.179034 GAGATGGAGCATTTCCCGCT 60.179 55.000 0.00 0.00 46.19 5.52
527 812 0.469917 TCGGAGATGGAGCATTTCCC 59.530 55.000 0.00 0.00 46.19 3.97
681 978 7.387948 GTGTTAATAGGTTGCTACATATCCCAG 59.612 40.741 5.96 0.00 30.46 4.45
682 979 7.071950 AGTGTTAATAGGTTGCTACATATCCCA 59.928 37.037 5.96 1.66 30.46 4.37
714 1011 4.012374 ACATCCTGGATAACAACTGCAAG 58.988 43.478 9.27 0.00 42.29 4.01
861 1168 1.783071 TGGTTTGGGGTTTGGAAGAC 58.217 50.000 0.00 0.00 0.00 3.01
926 1626 0.174389 TGATGGAACGAGAGCTGAGC 59.826 55.000 0.00 0.00 0.00 4.26
984 1695 3.790437 ATGGCTGCACCCTCTCCG 61.790 66.667 0.50 0.00 37.83 4.63
1194 2132 2.168496 GGAGTAGTACTGCACTCACCA 58.832 52.381 21.74 0.00 42.45 4.17
1217 2165 3.184379 TCAAATCGAAGAACGCTCTTGTG 59.816 43.478 5.66 0.00 42.19 3.33
1688 2702 7.564988 ACACGAAAAGAATAAGAAACGAGAAG 58.435 34.615 0.00 0.00 0.00 2.85
1689 2703 7.473027 ACACGAAAAGAATAAGAAACGAGAA 57.527 32.000 0.00 0.00 0.00 2.87
1693 2707 7.659290 AACAACACGAAAAGAATAAGAAACG 57.341 32.000 0.00 0.00 0.00 3.60
1787 2826 2.514824 GTGGAGCATTCCTCGCCC 60.515 66.667 0.00 0.00 44.36 6.13
1860 2929 1.373748 GAGCAGGTCGGCGTTGTTA 60.374 57.895 6.85 0.00 39.27 2.41
1881 2992 1.153647 CATCGGCAGGTCAGCGTTA 60.154 57.895 0.00 0.00 34.64 3.18
1978 3089 2.032634 TCAAATGCTCCGTGTCCGC 61.033 57.895 0.00 0.00 0.00 5.54
2106 3238 2.013483 GATCGCGACCTGCTGATCG 61.013 63.158 12.93 2.44 40.79 3.69
2109 3241 4.193334 CGGATCGCGACCTGCTGA 62.193 66.667 12.93 0.00 43.27 4.26
2316 3457 7.627311 TCGAATAGATGGATGGATTCAATCAT 58.373 34.615 0.00 0.00 37.26 2.45
2370 3513 7.342799 AGCATCAACCAAATAACCATCTATTGT 59.657 33.333 0.00 0.00 0.00 2.71
2408 3558 9.559958 AATCAAAGTTAATGAAGCAACTAATCG 57.440 29.630 0.00 0.00 33.92 3.34
2443 3597 5.013704 ACACACCAGGATACCTTAATGAACA 59.986 40.000 0.00 0.00 37.17 3.18
2452 3606 3.137544 TCAACAAACACACCAGGATACCT 59.862 43.478 0.00 0.00 37.17 3.08
2454 3608 4.615912 GCATCAACAAACACACCAGGATAC 60.616 45.833 0.00 0.00 0.00 2.24
2455 3609 3.505680 GCATCAACAAACACACCAGGATA 59.494 43.478 0.00 0.00 0.00 2.59
2459 3634 1.065401 ACGCATCAACAAACACACCAG 59.935 47.619 0.00 0.00 0.00 4.00
2461 3636 1.476074 CACGCATCAACAAACACACC 58.524 50.000 0.00 0.00 0.00 4.16
2532 5834 5.356190 TGACTCCTAGTAGTTTGATACCACG 59.644 44.000 0.00 0.00 0.00 4.94
2590 5895 7.349859 TCATCCCCCTAATCACTAAACTGTATT 59.650 37.037 0.00 0.00 0.00 1.89
2641 5954 8.192774 CAGCTCCATCAACACACAATTAAATAT 58.807 33.333 0.00 0.00 0.00 1.28
2672 5985 4.142249 ACAAACAAGGTAGCAACAAGGAAC 60.142 41.667 0.00 0.00 0.00 3.62
2677 5990 2.428890 CCCACAAACAAGGTAGCAACAA 59.571 45.455 0.00 0.00 0.00 2.83
2678 5991 2.028130 CCCACAAACAAGGTAGCAACA 58.972 47.619 0.00 0.00 0.00 3.33
2679 5992 2.293399 CTCCCACAAACAAGGTAGCAAC 59.707 50.000 0.00 0.00 0.00 4.17
2681 5994 1.817740 GCTCCCACAAACAAGGTAGCA 60.818 52.381 0.00 0.00 0.00 3.49
2682 5995 0.881796 GCTCCCACAAACAAGGTAGC 59.118 55.000 0.00 0.00 0.00 3.58
2683 5996 2.568623 AGCTCCCACAAACAAGGTAG 57.431 50.000 0.00 0.00 0.00 3.18
2684 5997 3.649023 TCTAAGCTCCCACAAACAAGGTA 59.351 43.478 0.00 0.00 0.00 3.08
2686 5999 3.140325 TCTAAGCTCCCACAAACAAGG 57.860 47.619 0.00 0.00 0.00 3.61
2687 6000 6.037610 GTCATATCTAAGCTCCCACAAACAAG 59.962 42.308 0.00 0.00 0.00 3.16
2689 6002 5.045942 TGTCATATCTAAGCTCCCACAAACA 60.046 40.000 0.00 0.00 0.00 2.83
2690 6003 5.428253 TGTCATATCTAAGCTCCCACAAAC 58.572 41.667 0.00 0.00 0.00 2.93
2691 6004 5.692115 TGTCATATCTAAGCTCCCACAAA 57.308 39.130 0.00 0.00 0.00 2.83
2692 6005 5.221722 GGATGTCATATCTAAGCTCCCACAA 60.222 44.000 0.00 0.00 0.00 3.33
2693 6006 4.284490 GGATGTCATATCTAAGCTCCCACA 59.716 45.833 0.00 0.00 0.00 4.17
2694 6007 4.530161 AGGATGTCATATCTAAGCTCCCAC 59.470 45.833 0.00 0.00 0.00 4.61
2695 6008 4.756564 AGGATGTCATATCTAAGCTCCCA 58.243 43.478 0.00 0.00 0.00 4.37
2696 6009 5.753721 AAGGATGTCATATCTAAGCTCCC 57.246 43.478 0.00 0.00 0.00 4.30
2697 6010 7.710676 TCTAAGGATGTCATATCTAAGCTCC 57.289 40.000 0.00 0.00 0.00 4.70
2698 6011 9.988815 TTTTCTAAGGATGTCATATCTAAGCTC 57.011 33.333 0.00 0.00 0.00 4.09
2699 6012 9.771534 GTTTTCTAAGGATGTCATATCTAAGCT 57.228 33.333 0.00 0.00 0.00 3.74
2700 6013 9.547753 TGTTTTCTAAGGATGTCATATCTAAGC 57.452 33.333 0.00 0.00 0.00 3.09
2708 6021 9.775854 CATCTAGATGTTTTCTAAGGATGTCAT 57.224 33.333 22.42 0.00 36.15 3.06
2762 6075 5.000591 CCATGGCATGTACGATTAATGGTA 58.999 41.667 24.80 6.25 0.00 3.25
2764 6077 3.820467 ACCATGGCATGTACGATTAATGG 59.180 43.478 24.80 10.02 39.38 3.16
2765 6078 5.008514 TCAACCATGGCATGTACGATTAATG 59.991 40.000 24.80 8.82 0.00 1.90
2766 6079 5.129634 TCAACCATGGCATGTACGATTAAT 58.870 37.500 24.80 0.00 0.00 1.40
2793 6106 2.310538 CCGTAAGTAACCGATACCCCT 58.689 52.381 0.00 0.00 34.89 4.79
2799 6119 3.319122 GGATGGTACCGTAAGTAACCGAT 59.681 47.826 6.60 0.00 37.92 4.18
2801 6121 2.689983 AGGATGGTACCGTAAGTAACCG 59.310 50.000 6.60 0.00 37.92 4.44
2835 6464 1.273606 CATCTACAATCGGGGATCGCT 59.726 52.381 9.90 0.00 39.05 4.93
2836 6465 1.714794 CATCTACAATCGGGGATCGC 58.285 55.000 0.06 0.06 39.05 4.58
2847 6476 3.403968 TGCTTGGTAAACGCATCTACAA 58.596 40.909 0.00 0.00 0.00 2.41
2848 6477 3.046968 TGCTTGGTAAACGCATCTACA 57.953 42.857 0.00 0.00 0.00 2.74
2850 6479 5.637006 ATTTTGCTTGGTAAACGCATCTA 57.363 34.783 0.00 0.00 33.15 1.98
2856 6485 6.109320 TCGGTATATTTTGCTTGGTAAACG 57.891 37.500 0.00 0.00 0.00 3.60
2864 6493 3.181494 GGGCGTTTCGGTATATTTTGCTT 60.181 43.478 0.00 0.00 0.00 3.91
2968 6734 5.010617 GGGGCCATTATAATTGTGTAACCAG 59.989 44.000 4.39 0.00 34.36 4.00
2974 6740 2.091555 ACCGGGGCCATTATAATTGTGT 60.092 45.455 6.32 0.00 0.00 3.72
3013 6779 2.092267 ACCACTACTTTTGGAACCGGTT 60.092 45.455 22.50 22.50 37.58 4.44
3016 6782 2.806244 CTGACCACTACTTTTGGAACCG 59.194 50.000 0.00 0.00 37.58 4.44
3045 6811 0.242825 TGGAACTACTCGCAGGTTCG 59.757 55.000 0.00 0.00 39.86 3.95
3052 6818 0.666577 AAGCACGTGGAACTACTCGC 60.667 55.000 18.88 0.00 31.75 5.03
3069 6835 3.243907 ACAGACGACCTCTCCAAGAAAAG 60.244 47.826 0.00 0.00 0.00 2.27
3075 6841 4.884668 ATTAAACAGACGACCTCTCCAA 57.115 40.909 0.00 0.00 0.00 3.53
3137 6910 0.224746 CGTGCGATCGAAACATCTCG 59.775 55.000 21.57 8.67 40.25 4.04
3138 6911 1.253034 GTCGTGCGATCGAAACATCTC 59.747 52.381 21.57 0.00 41.47 2.75
3150 6923 3.513680 AATGTTGTATAGGTCGTGCGA 57.486 42.857 0.00 0.00 0.00 5.10
3164 6937 6.986231 TGCCATATATATCTCCGCTAATGTTG 59.014 38.462 0.00 0.00 0.00 3.33
3165 6938 7.124573 TGCCATATATATCTCCGCTAATGTT 57.875 36.000 0.00 0.00 0.00 2.71
3166 6939 6.731292 TGCCATATATATCTCCGCTAATGT 57.269 37.500 0.00 0.00 0.00 2.71
3178 6951 3.053395 CCCACCCAGCTTGCCATATATAT 60.053 47.826 0.00 0.00 0.00 0.86
3179 6952 2.308570 CCCACCCAGCTTGCCATATATA 59.691 50.000 0.00 0.00 0.00 0.86
3180 6953 1.076024 CCCACCCAGCTTGCCATATAT 59.924 52.381 0.00 0.00 0.00 0.86
3181 6954 0.478072 CCCACCCAGCTTGCCATATA 59.522 55.000 0.00 0.00 0.00 0.86
3182 6955 1.231068 CCCACCCAGCTTGCCATAT 59.769 57.895 0.00 0.00 0.00 1.78
3183 6956 2.682846 CCCACCCAGCTTGCCATA 59.317 61.111 0.00 0.00 0.00 2.74
3188 6961 3.892104 ATGTGGCCCACCCAGCTTG 62.892 63.158 12.25 0.00 46.54 4.01
3189 6962 3.593680 ATGTGGCCCACCCAGCTT 61.594 61.111 12.25 0.00 46.54 3.74
3190 6963 4.371417 CATGTGGCCCACCCAGCT 62.371 66.667 12.25 0.00 46.54 4.24
3192 6965 3.944250 GACCATGTGGCCCACCCAG 62.944 68.421 12.25 1.79 46.54 4.45
3193 6966 3.978193 GACCATGTGGCCCACCCA 61.978 66.667 12.25 0.00 42.79 4.51
3194 6967 3.521765 TTGACCATGTGGCCCACCC 62.522 63.158 12.25 0.00 39.32 4.61
3195 6968 0.904394 ATTTGACCATGTGGCCCACC 60.904 55.000 12.25 0.00 39.32 4.61
3196 6969 0.975887 AATTTGACCATGTGGCCCAC 59.024 50.000 7.01 7.01 39.32 4.61
3197 6970 1.347050 CAAATTTGACCATGTGGCCCA 59.653 47.619 13.08 0.00 39.32 5.36
3198 6971 1.945355 GCAAATTTGACCATGTGGCCC 60.945 52.381 22.31 0.00 39.32 5.80
3199 6972 1.002315 AGCAAATTTGACCATGTGGCC 59.998 47.619 22.31 0.00 39.32 5.36
3200 6973 2.028748 AGAGCAAATTTGACCATGTGGC 60.029 45.455 22.31 2.83 39.32 5.01
3201 6974 3.256383 TGAGAGCAAATTTGACCATGTGG 59.744 43.478 22.31 0.00 42.17 4.17
3202 6975 4.232221 GTGAGAGCAAATTTGACCATGTG 58.768 43.478 22.31 0.00 0.00 3.21
3203 6976 3.890756 TGTGAGAGCAAATTTGACCATGT 59.109 39.130 22.31 2.72 0.00 3.21
3204 6977 4.232221 GTGTGAGAGCAAATTTGACCATG 58.768 43.478 22.31 0.00 0.00 3.66
3205 6978 3.256631 GGTGTGAGAGCAAATTTGACCAT 59.743 43.478 22.31 3.98 0.00 3.55
3206 6979 2.622942 GGTGTGAGAGCAAATTTGACCA 59.377 45.455 22.31 9.71 0.00 4.02
3207 6980 2.887152 AGGTGTGAGAGCAAATTTGACC 59.113 45.455 22.31 16.78 0.00 4.02
3208 6981 3.364366 CGAGGTGTGAGAGCAAATTTGAC 60.364 47.826 22.31 13.85 0.00 3.18
3209 6982 2.807967 CGAGGTGTGAGAGCAAATTTGA 59.192 45.455 22.31 0.00 0.00 2.69
3210 6983 2.666619 GCGAGGTGTGAGAGCAAATTTG 60.667 50.000 14.03 14.03 0.00 2.32
3211 6984 1.537202 GCGAGGTGTGAGAGCAAATTT 59.463 47.619 0.00 0.00 0.00 1.82
3212 6985 1.160137 GCGAGGTGTGAGAGCAAATT 58.840 50.000 0.00 0.00 0.00 1.82
3213 6986 0.322975 AGCGAGGTGTGAGAGCAAAT 59.677 50.000 0.00 0.00 0.00 2.32
3214 6987 0.601046 CAGCGAGGTGTGAGAGCAAA 60.601 55.000 0.00 0.00 0.00 3.68
3215 6988 1.005748 CAGCGAGGTGTGAGAGCAA 60.006 57.895 0.00 0.00 0.00 3.91
3216 6989 1.253593 ATCAGCGAGGTGTGAGAGCA 61.254 55.000 2.10 0.00 0.00 4.26
3217 6990 0.108424 AATCAGCGAGGTGTGAGAGC 60.108 55.000 2.10 0.00 0.00 4.09
3218 6991 2.376808 AAATCAGCGAGGTGTGAGAG 57.623 50.000 2.10 0.00 0.00 3.20
3219 6992 2.037121 TGAAAATCAGCGAGGTGTGAGA 59.963 45.455 2.10 0.00 0.00 3.27
3220 6993 2.416747 TGAAAATCAGCGAGGTGTGAG 58.583 47.619 2.10 0.00 0.00 3.51
3221 6994 2.542020 TGAAAATCAGCGAGGTGTGA 57.458 45.000 2.10 0.00 0.00 3.58
3222 6995 3.837213 AATGAAAATCAGCGAGGTGTG 57.163 42.857 2.10 0.00 0.00 3.82
3223 6996 4.759693 TGTAAATGAAAATCAGCGAGGTGT 59.240 37.500 2.10 0.00 0.00 4.16
3224 6997 5.088739 GTGTAAATGAAAATCAGCGAGGTG 58.911 41.667 0.00 0.00 0.00 4.00
3225 6998 5.003804 AGTGTAAATGAAAATCAGCGAGGT 58.996 37.500 0.00 0.00 0.00 3.85
3226 6999 5.327091 CAGTGTAAATGAAAATCAGCGAGG 58.673 41.667 0.00 0.00 30.28 4.63
3227 7000 4.790140 GCAGTGTAAATGAAAATCAGCGAG 59.210 41.667 0.00 0.00 30.28 5.03
3228 7001 4.668941 CGCAGTGTAAATGAAAATCAGCGA 60.669 41.667 0.00 0.00 42.47 4.93
3229 7002 3.539563 CGCAGTGTAAATGAAAATCAGCG 59.460 43.478 0.00 0.00 30.28 5.18
3230 7003 3.853671 CCGCAGTGTAAATGAAAATCAGC 59.146 43.478 0.00 0.00 30.28 4.26
3231 7004 4.414852 CCCGCAGTGTAAATGAAAATCAG 58.585 43.478 0.00 0.00 30.28 2.90
3232 7005 3.192422 CCCCGCAGTGTAAATGAAAATCA 59.808 43.478 0.00 0.00 30.28 2.57
3233 7006 3.428862 CCCCCGCAGTGTAAATGAAAATC 60.429 47.826 0.00 0.00 30.28 2.17
3234 7007 2.495669 CCCCCGCAGTGTAAATGAAAAT 59.504 45.455 0.00 0.00 30.28 1.82
3235 7008 1.889829 CCCCCGCAGTGTAAATGAAAA 59.110 47.619 0.00 0.00 30.28 2.29
3236 7009 1.202952 ACCCCCGCAGTGTAAATGAAA 60.203 47.619 0.00 0.00 30.28 2.69
3237 7010 0.402504 ACCCCCGCAGTGTAAATGAA 59.597 50.000 0.00 0.00 30.28 2.57
3238 7011 0.035820 GACCCCCGCAGTGTAAATGA 60.036 55.000 0.00 0.00 30.28 2.57
3239 7012 0.322098 TGACCCCCGCAGTGTAAATG 60.322 55.000 0.00 0.00 33.24 2.32
3240 7013 0.322187 GTGACCCCCGCAGTGTAAAT 60.322 55.000 0.00 0.00 0.00 1.40
3241 7014 1.071814 GTGACCCCCGCAGTGTAAA 59.928 57.895 0.00 0.00 0.00 2.01
3242 7015 1.697082 TTGTGACCCCCGCAGTGTAA 61.697 55.000 0.00 0.00 36.53 2.41
3243 7016 2.141448 TTGTGACCCCCGCAGTGTA 61.141 57.895 0.00 0.00 36.53 2.90
3244 7017 3.484806 TTGTGACCCCCGCAGTGT 61.485 61.111 0.00 0.00 36.53 3.55
3245 7018 2.978010 GTTGTGACCCCCGCAGTG 60.978 66.667 0.00 0.00 36.53 3.66
3246 7019 4.265056 GGTTGTGACCCCCGCAGT 62.265 66.667 0.00 0.00 40.25 4.40
3254 7027 0.328258 AGGCTACATGGGTTGTGACC 59.672 55.000 0.00 0.00 45.75 4.02
3255 7028 1.812571 CAAGGCTACATGGGTTGTGAC 59.187 52.381 0.00 0.00 39.48 3.67
3256 7029 1.886222 GCAAGGCTACATGGGTTGTGA 60.886 52.381 0.00 0.00 39.48 3.58
3257 7030 0.527565 GCAAGGCTACATGGGTTGTG 59.472 55.000 0.00 0.00 39.48 3.33
3258 7031 0.405585 AGCAAGGCTACATGGGTTGT 59.594 50.000 0.00 0.00 42.62 3.32
3259 7032 0.813184 CAGCAAGGCTACATGGGTTG 59.187 55.000 0.00 0.00 36.40 3.77
3260 7033 0.405585 ACAGCAAGGCTACATGGGTT 59.594 50.000 0.00 0.00 36.40 4.11
3261 7034 1.210478 CTACAGCAAGGCTACATGGGT 59.790 52.381 0.00 0.00 36.40 4.51
3262 7035 1.959042 CTACAGCAAGGCTACATGGG 58.041 55.000 0.00 0.00 36.40 4.00
3263 7036 1.134280 AGCTACAGCAAGGCTACATGG 60.134 52.381 3.70 0.00 45.16 3.66
3264 7037 2.208431 GAGCTACAGCAAGGCTACATG 58.792 52.381 3.70 0.00 45.16 3.21
3265 7038 1.139853 GGAGCTACAGCAAGGCTACAT 59.860 52.381 3.70 0.00 45.16 2.29
3266 7039 0.537188 GGAGCTACAGCAAGGCTACA 59.463 55.000 3.70 0.00 45.16 2.74
3267 7040 0.528684 CGGAGCTACAGCAAGGCTAC 60.529 60.000 3.70 0.00 45.16 3.58
3268 7041 1.816537 CGGAGCTACAGCAAGGCTA 59.183 57.895 3.70 0.00 45.16 3.93
3269 7042 2.581354 CGGAGCTACAGCAAGGCT 59.419 61.111 3.70 0.00 45.16 4.58
3287 7060 1.532316 TATACTCCTTCGGCGGGGG 60.532 63.158 7.21 9.97 0.00 5.40
3288 7061 0.538977 TCTATACTCCTTCGGCGGGG 60.539 60.000 7.21 10.37 0.00 5.73
3289 7062 0.882474 CTCTATACTCCTTCGGCGGG 59.118 60.000 7.21 0.32 0.00 6.13
3290 7063 0.882474 CCTCTATACTCCTTCGGCGG 59.118 60.000 7.21 0.00 0.00 6.13
3291 7064 1.893544 TCCTCTATACTCCTTCGGCG 58.106 55.000 0.00 0.00 0.00 6.46
3292 7065 4.765856 TGTATTCCTCTATACTCCTTCGGC 59.234 45.833 0.00 0.00 33.19 5.54
3293 7066 6.005198 ACTGTATTCCTCTATACTCCTTCGG 58.995 44.000 0.00 0.00 33.19 4.30
3294 7067 6.711194 TCACTGTATTCCTCTATACTCCTTCG 59.289 42.308 0.00 0.00 33.19 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.