Multiple sequence alignment - TraesCS2B01G118300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G118300 chr2B 100.000 3402 0 0 1963 5364 82713681 82717082 0.000000e+00 6283
1 TraesCS2B01G118300 chr2B 100.000 1576 0 0 1 1576 82711719 82713294 0.000000e+00 2911
2 TraesCS2B01G118300 chr2B 88.014 1410 72 24 2363 3734 82851780 82853130 0.000000e+00 1578
3 TraesCS2B01G118300 chr2B 90.387 801 49 8 2363 3143 82361386 82362178 0.000000e+00 1027
4 TraesCS2B01G118300 chr2B 87.302 882 89 13 609 1475 82850595 82851468 0.000000e+00 987
5 TraesCS2B01G118300 chr2B 88.873 692 46 13 3133 3819 82362133 82362798 0.000000e+00 822
6 TraesCS2B01G118300 chr2B 88.976 635 39 8 2 609 755951529 755952159 0.000000e+00 756
7 TraesCS2B01G118300 chr2B 82.837 705 80 22 3132 3819 83954485 83953805 1.290000e-165 593
8 TraesCS2B01G118300 chr2B 87.238 478 51 7 2364 2831 83955301 83954824 2.200000e-148 536
9 TraesCS2B01G118300 chr2B 87.895 380 30 6 1104 1475 82360716 82361087 2.970000e-117 433
10 TraesCS2B01G118300 chr2B 93.133 233 11 5 380 609 13258398 13258168 2.390000e-88 337
11 TraesCS2B01G118300 chr2B 91.099 191 17 0 2169 2359 49690528 49690718 5.330000e-65 259
12 TraesCS2B01G118300 chr2B 90.722 194 18 0 2166 2359 764516469 764516662 5.330000e-65 259
13 TraesCS2B01G118300 chr2B 90.374 187 12 4 1989 2169 82851601 82851787 1.930000e-59 241
14 TraesCS2B01G118300 chr2B 90.608 181 10 5 1989 2169 82361220 82361393 3.230000e-57 233
15 TraesCS2B01G118300 chr2B 91.473 129 11 0 2041 2169 83955423 83955295 1.540000e-40 178
16 TraesCS2B01G118300 chr2B 98.958 96 0 1 1481 1576 775440913 775440819 2.570000e-38 171
17 TraesCS2B01G118300 chr2D 90.774 1485 91 16 2363 3819 52647052 52648518 0.000000e+00 1941
18 TraesCS2B01G118300 chr2D 89.887 1503 91 24 2363 3819 52852127 52853614 0.000000e+00 1877
19 TraesCS2B01G118300 chr2D 91.523 755 56 7 4293 5043 99119031 99119781 0.000000e+00 1033
20 TraesCS2B01G118300 chr2D 87.401 881 91 12 609 1475 52850942 52851816 0.000000e+00 994
21 TraesCS2B01G118300 chr2D 92.009 438 30 4 3829 4261 99118531 99118968 1.280000e-170 610
22 TraesCS2B01G118300 chr2D 82.517 715 76 26 3129 3819 53649908 53650597 2.780000e-162 582
23 TraesCS2B01G118300 chr2D 93.668 379 21 3 1097 1475 52646415 52646790 1.010000e-156 564
24 TraesCS2B01G118300 chr2D 87.315 473 54 3 2363 2831 53649115 53649585 2.200000e-148 536
25 TraesCS2B01G118300 chr2D 89.140 221 21 1 761 978 52645801 52646021 6.850000e-69 272
26 TraesCS2B01G118300 chr2D 91.579 190 7 5 1989 2169 52851945 52852134 2.480000e-63 254
27 TraesCS2B01G118300 chr2D 92.073 164 8 3 2009 2169 52646898 52647059 5.410000e-55 226
28 TraesCS2B01G118300 chr2D 82.938 211 25 7 1967 2169 52959404 52959611 4.270000e-41 180
29 TraesCS2B01G118300 chr2D 89.423 104 6 2 3631 3730 52960631 52960733 5.640000e-25 126
30 TraesCS2B01G118300 chr1D 88.737 1243 106 22 3826 5042 195998385 195999619 0.000000e+00 1489
31 TraesCS2B01G118300 chr2A 85.163 1503 101 58 2363 3809 54111986 54113422 0.000000e+00 1428
32 TraesCS2B01G118300 chr2A 84.242 1523 109 46 2363 3819 54012431 54013888 0.000000e+00 1362
33 TraesCS2B01G118300 chr2A 90.476 756 62 10 4293 5041 209151335 209150583 0.000000e+00 989
34 TraesCS2B01G118300 chr2A 86.520 816 92 9 672 1475 54110897 54111706 0.000000e+00 881
35 TraesCS2B01G118300 chr2A 91.514 436 31 5 3829 4261 209151828 209151396 3.580000e-166 595
36 TraesCS2B01G118300 chr2A 83.460 659 66 19 3161 3788 54473180 54472534 1.680000e-159 573
37 TraesCS2B01G118300 chr2A 90.452 398 35 2 1079 1475 54011746 54012141 6.160000e-144 521
38 TraesCS2B01G118300 chr2A 85.744 477 58 7 2363 2829 54474011 54473535 3.730000e-136 496
39 TraesCS2B01G118300 chr2A 94.720 322 11 6 5044 5361 61475562 61475881 3.730000e-136 496
40 TraesCS2B01G118300 chr2A 85.776 464 64 1 613 1074 54011181 54011644 1.740000e-134 490
41 TraesCS2B01G118300 chr2A 93.365 211 9 3 1963 2169 54012229 54012438 1.880000e-79 307
42 TraesCS2B01G118300 chr2A 93.264 193 13 0 2170 2362 16395842 16396034 8.790000e-73 285
43 TraesCS2B01G118300 chr2A 83.854 192 19 7 1989 2169 54474194 54474004 7.140000e-39 172
44 TraesCS2B01G118300 chr2A 86.335 161 17 3 2014 2169 54139881 54140041 2.570000e-38 171
45 TraesCS2B01G118300 chr2A 89.423 104 6 2 3631 3730 54141055 54141157 5.640000e-25 126
46 TraesCS2B01G118300 chr3B 92.446 781 52 5 4266 5040 684413906 684414685 0.000000e+00 1109
47 TraesCS2B01G118300 chr3B 91.933 781 56 5 4266 5040 684416162 684416941 0.000000e+00 1086
48 TraesCS2B01G118300 chr3B 92.496 613 39 7 1 609 793040198 793039589 0.000000e+00 870
49 TraesCS2B01G118300 chr3B 92.551 443 25 6 3828 4266 684415670 684416108 3.530000e-176 628
50 TraesCS2B01G118300 chr5D 92.053 755 54 6 4293 5042 84682499 84683252 0.000000e+00 1057
51 TraesCS2B01G118300 chr5D 93.968 431 23 2 3831 4258 84682003 84682433 0.000000e+00 649
52 TraesCS2B01G118300 chr5D 92.874 435 27 3 3830 4261 449649516 449649083 3.530000e-176 628
53 TraesCS2B01G118300 chr3D 91.656 755 59 4 4293 5043 483004263 483005017 0.000000e+00 1042
54 TraesCS2B01G118300 chr3D 91.237 194 17 0 2170 2363 31969192 31969385 1.150000e-66 265
55 TraesCS2B01G118300 chr6B 89.734 789 63 9 4272 5043 643569998 643569211 0.000000e+00 992
56 TraesCS2B01G118300 chr6B 92.496 613 38 7 1 609 22566416 22565808 0.000000e+00 870
57 TraesCS2B01G118300 chr6B 91.558 616 41 10 1 611 662802073 662801464 0.000000e+00 839
58 TraesCS2B01G118300 chr6B 88.254 613 36 7 1 609 705528913 705528333 0.000000e+00 701
59 TraesCS2B01G118300 chr6B 95.062 324 11 4 5044 5364 25980253 25979932 6.200000e-139 505
60 TraesCS2B01G118300 chr6B 94.737 323 12 5 5044 5364 355967998 355967679 1.040000e-136 497
61 TraesCS2B01G118300 chr6B 91.534 189 16 0 2175 2363 42765948 42765760 1.480000e-65 261
62 TraesCS2B01G118300 chr6B 90.722 194 18 0 2169 2362 7095140 7094947 5.330000e-65 259
63 TraesCS2B01G118300 chr5B 93.290 611 34 7 1 609 522784373 522784978 0.000000e+00 894
64 TraesCS2B01G118300 chr5B 92.810 612 38 6 1 609 522721456 522722064 0.000000e+00 881
65 TraesCS2B01G118300 chr5B 95.031 322 14 2 5044 5364 648258633 648258313 6.200000e-139 505
66 TraesCS2B01G118300 chr5B 98.958 96 0 1 1481 1576 464362062 464361968 2.570000e-38 171
67 TraesCS2B01G118300 chr1B 92.727 605 36 7 10 609 654103861 654103260 0.000000e+00 867
68 TraesCS2B01G118300 chr7B 92.500 600 37 8 15 609 52642176 52641580 0.000000e+00 852
69 TraesCS2B01G118300 chr7B 91.533 437 33 3 3829 4261 611230328 611229892 2.760000e-167 599
70 TraesCS2B01G118300 chr7B 94.704 321 11 5 5044 5361 693399344 693399661 1.340000e-135 494
71 TraesCS2B01G118300 chr4A 91.013 612 31 7 1 609 675174367 675174957 0.000000e+00 804
72 TraesCS2B01G118300 chr4A 81.997 761 105 21 4306 5042 13653426 13652674 7.630000e-173 617
73 TraesCS2B01G118300 chrUn 92.500 440 25 4 3827 4258 26237959 26238398 1.640000e-174 623
74 TraesCS2B01G118300 chrUn 91.304 437 34 3 3829 4261 276762649 276763085 1.290000e-165 593
75 TraesCS2B01G118300 chr7D 94.753 324 13 3 5044 5364 63450697 63450375 8.020000e-138 501
76 TraesCS2B01G118300 chr7D 91.282 195 17 0 2169 2363 3431549 3431355 3.180000e-67 267
77 TraesCS2B01G118300 chr7A 95.031 322 11 4 5044 5361 558102228 558102548 8.020000e-138 501
78 TraesCS2B01G118300 chr7A 94.704 321 12 5 5044 5361 640496597 640496915 1.340000e-135 494
79 TraesCS2B01G118300 chr7A 94.086 186 11 0 2173 2358 59806962 59807147 3.160000e-72 283
80 TraesCS2B01G118300 chr7A 98.958 96 0 1 1481 1576 613700015 613699921 2.570000e-38 171
81 TraesCS2B01G118300 chr7A 97.917 96 1 1 1481 1576 729888932 729889026 1.200000e-36 165
82 TraesCS2B01G118300 chr1A 94.769 325 11 5 5044 5364 27328793 27328471 8.020000e-138 501
83 TraesCS2B01G118300 chr6D 91.053 190 17 0 2173 2362 316831240 316831051 1.920000e-64 257


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G118300 chr2B 82711719 82717082 5363 False 4597.000000 6283 100.000000 1 5364 2 chr2B.!!$F5 5363
1 TraesCS2B01G118300 chr2B 82850595 82853130 2535 False 935.333333 1578 88.563333 609 3734 3 chr2B.!!$F6 3125
2 TraesCS2B01G118300 chr2B 755951529 755952159 630 False 756.000000 756 88.976000 2 609 1 chr2B.!!$F2 607
3 TraesCS2B01G118300 chr2B 82360716 82362798 2082 False 628.750000 1027 89.440750 1104 3819 4 chr2B.!!$F4 2715
4 TraesCS2B01G118300 chr2B 83953805 83955423 1618 True 435.666667 593 87.182667 2041 3819 3 chr2B.!!$R3 1778
5 TraesCS2B01G118300 chr2D 52850942 52853614 2672 False 1041.666667 1877 89.622333 609 3819 3 chr2D.!!$F2 3210
6 TraesCS2B01G118300 chr2D 99118531 99119781 1250 False 821.500000 1033 91.766000 3829 5043 2 chr2D.!!$F5 1214
7 TraesCS2B01G118300 chr2D 52645801 52648518 2717 False 750.750000 1941 91.413750 761 3819 4 chr2D.!!$F1 3058
8 TraesCS2B01G118300 chr2D 53649115 53650597 1482 False 559.000000 582 84.916000 2363 3819 2 chr2D.!!$F4 1456
9 TraesCS2B01G118300 chr1D 195998385 195999619 1234 False 1489.000000 1489 88.737000 3826 5042 1 chr1D.!!$F1 1216
10 TraesCS2B01G118300 chr2A 54110897 54113422 2525 False 1154.500000 1428 85.841500 672 3809 2 chr2A.!!$F4 3137
11 TraesCS2B01G118300 chr2A 209150583 209151828 1245 True 792.000000 989 90.995000 3829 5041 2 chr2A.!!$R2 1212
12 TraesCS2B01G118300 chr2A 54011181 54013888 2707 False 670.000000 1362 88.458750 613 3819 4 chr2A.!!$F3 3206
13 TraesCS2B01G118300 chr2A 54472534 54474194 1660 True 413.666667 573 84.352667 1989 3788 3 chr2A.!!$R1 1799
14 TraesCS2B01G118300 chr3B 684413906 684416941 3035 False 941.000000 1109 92.310000 3828 5040 3 chr3B.!!$F1 1212
15 TraesCS2B01G118300 chr3B 793039589 793040198 609 True 870.000000 870 92.496000 1 609 1 chr3B.!!$R1 608
16 TraesCS2B01G118300 chr5D 84682003 84683252 1249 False 853.000000 1057 93.010500 3831 5042 2 chr5D.!!$F1 1211
17 TraesCS2B01G118300 chr3D 483004263 483005017 754 False 1042.000000 1042 91.656000 4293 5043 1 chr3D.!!$F2 750
18 TraesCS2B01G118300 chr6B 643569211 643569998 787 True 992.000000 992 89.734000 4272 5043 1 chr6B.!!$R6 771
19 TraesCS2B01G118300 chr6B 22565808 22566416 608 True 870.000000 870 92.496000 1 609 1 chr6B.!!$R2 608
20 TraesCS2B01G118300 chr6B 662801464 662802073 609 True 839.000000 839 91.558000 1 611 1 chr6B.!!$R7 610
21 TraesCS2B01G118300 chr6B 705528333 705528913 580 True 701.000000 701 88.254000 1 609 1 chr6B.!!$R8 608
22 TraesCS2B01G118300 chr5B 522784373 522784978 605 False 894.000000 894 93.290000 1 609 1 chr5B.!!$F2 608
23 TraesCS2B01G118300 chr5B 522721456 522722064 608 False 881.000000 881 92.810000 1 609 1 chr5B.!!$F1 608
24 TraesCS2B01G118300 chr1B 654103260 654103861 601 True 867.000000 867 92.727000 10 609 1 chr1B.!!$R1 599
25 TraesCS2B01G118300 chr7B 52641580 52642176 596 True 852.000000 852 92.500000 15 609 1 chr7B.!!$R1 594
26 TraesCS2B01G118300 chr4A 675174367 675174957 590 False 804.000000 804 91.013000 1 609 1 chr4A.!!$F1 608
27 TraesCS2B01G118300 chr4A 13652674 13653426 752 True 617.000000 617 81.997000 4306 5042 1 chr4A.!!$R1 736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
957 1015 0.175760 TCATGGCGACTGTAGAAGGC 59.824 55.0 0.00 0.00 0.00 4.35 F
1505 1853 0.037139 TGCTACACGTACGGGCAATT 60.037 50.0 19.40 0.00 0.00 2.32 F
2209 2609 0.108756 AAGACTCTTAGCGGCGAACC 60.109 55.0 12.98 0.00 0.00 3.62 F
3343 3894 0.036765 AACTACTTCATGCCGGCGAA 60.037 50.0 23.90 18.71 0.00 4.70 F
3345 3896 0.179111 CTACTTCATGCCGGCGAAGA 60.179 55.0 35.95 25.31 40.94 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2190 2590 0.108756 GGTTCGCCGCTAAGAGTCTT 60.109 55.000 10.87 10.87 0.00 3.01 R
2318 2718 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97 R
4193 4831 0.179100 CTGTGAGGGTATGCGTCCTG 60.179 60.000 0.00 0.00 32.74 3.86 R
4301 4998 0.255890 AAATGGGCCGCACTATCTGT 59.744 50.000 0.00 0.00 0.00 3.41 R
5053 5789 2.290323 GGTGCATATGTCCCCATAGACC 60.290 54.545 4.29 0.00 36.99 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 164 1.858372 TTTTAAAGGCAGGCGTCGGC 61.858 55.000 11.43 11.43 38.90 5.54
273 283 1.929806 ATCGACGCTTAGACGGCACA 61.930 55.000 0.00 0.00 42.81 4.57
301 312 3.890221 TCCACACACGTCGCGTCA 61.890 61.111 5.77 0.00 38.32 4.35
328 339 0.791983 CACACGTCGCGTCGTCTTAT 60.792 55.000 27.35 11.38 42.27 1.73
419 435 0.941936 TGGTCGTCGTCGTACGTACA 60.942 55.000 24.50 9.77 43.14 2.90
452 468 1.776034 CTACGGGGTAGTCGGCGTAC 61.776 65.000 6.85 2.56 32.09 3.67
544 584 2.125326 TGCTGGGACGATCCTACCG 61.125 63.158 0.00 0.00 36.57 4.02
610 652 1.609841 GGGGGTTGTACCGAAGAAGTG 60.610 57.143 0.00 0.00 39.83 3.16
621 663 7.660112 TGTACCGAAGAAGTGTTTTACTATGA 58.340 34.615 0.00 0.00 39.18 2.15
635 677 8.740906 TGTTTTACTATGAGAGTCTTCTACCTG 58.259 37.037 0.00 0.00 39.81 4.00
692 734 1.406069 CGTGGATTCAACTGCTAGGCT 60.406 52.381 0.00 0.00 0.00 4.58
738 780 1.460359 GCATTTCACGTGCCATTTTGG 59.540 47.619 11.67 0.00 41.55 3.28
746 788 3.949855 GCCATTTTGGGCGTTGTG 58.050 55.556 0.00 0.00 45.40 3.33
811 859 4.152402 CGCTATGGATTTAACCCTCGATTG 59.848 45.833 0.00 0.00 0.00 2.67
824 872 2.061773 CTCGATTGAACAACGCAGACT 58.938 47.619 0.00 0.00 0.00 3.24
841 889 2.093973 AGACTGGTATGCTTTCACTCCG 60.094 50.000 0.00 0.00 0.00 4.63
857 908 3.803082 CGGAACTCGTCGGCCGTA 61.803 66.667 27.15 9.34 38.99 4.02
887 945 3.301794 TTTCTGTGGCTGCATATGGAT 57.698 42.857 4.56 0.00 0.00 3.41
917 975 5.400703 GCTAGAAACAGCTAGACGTTAACT 58.599 41.667 3.71 2.45 40.20 2.24
956 1014 2.672961 TTCATGGCGACTGTAGAAGG 57.327 50.000 0.00 0.00 0.00 3.46
957 1015 0.175760 TCATGGCGACTGTAGAAGGC 59.824 55.000 0.00 0.00 0.00 4.35
993 1051 2.396590 TATCGGCCGCTCTTTTTCTT 57.603 45.000 23.51 0.00 0.00 2.52
1003 1061 3.003689 CGCTCTTTTTCTTGGTCACACAT 59.996 43.478 0.00 0.00 0.00 3.21
1012 1070 7.397892 TTTCTTGGTCACACATAAAAACAGA 57.602 32.000 0.00 0.00 0.00 3.41
1014 1072 7.397892 TCTTGGTCACACATAAAAACAGAAA 57.602 32.000 0.00 0.00 0.00 2.52
1047 1105 5.682659 TGTTTGCACTACTAACCACCTAAA 58.317 37.500 0.00 0.00 33.64 1.85
1074 1132 8.604035 GGTGTGTACATGATCATTAACAACTAG 58.396 37.037 17.39 2.71 0.00 2.57
1085 1240 6.517605 TCATTAACAACTAGCTGTGTGTGTA 58.482 36.000 0.00 0.00 0.00 2.90
1090 1245 4.991056 ACAACTAGCTGTGTGTGTATCAAG 59.009 41.667 0.00 0.00 0.00 3.02
1097 1252 7.170393 AGCTGTGTGTGTATCAAGTAGAATA 57.830 36.000 0.00 0.00 0.00 1.75
1098 1253 7.611770 AGCTGTGTGTGTATCAAGTAGAATAA 58.388 34.615 0.00 0.00 0.00 1.40
1154 1487 4.822026 ACACAGTGCTTATCCAGAAGTAC 58.178 43.478 0.00 0.00 40.99 2.73
1172 1505 7.981789 CAGAAGTACTATCATTAGCAACCAAGA 59.018 37.037 0.00 0.00 0.00 3.02
1185 1526 3.063452 GCAACCAAGAATTAGAATCGCGA 59.937 43.478 13.09 13.09 0.00 5.87
1251 1592 1.282930 GCGTTATCTCCCGCGATTCC 61.283 60.000 8.23 0.00 40.56 3.01
1254 1595 0.391597 TTATCTCCCGCGATTCCCAC 59.608 55.000 8.23 0.00 0.00 4.61
1387 1735 6.113411 GCGGGATATGTAGCAACCTATTAAT 58.887 40.000 0.00 0.00 0.00 1.40
1432 1780 4.772100 TCCAGGATGTTATCATGAGCGATA 59.228 41.667 0.09 0.00 43.29 2.92
1478 1826 5.979993 TGGTCGTAGGAGCATTAATTAACA 58.020 37.500 12.97 0.00 45.17 2.41
1481 1829 4.743151 TCGTAGGAGCATTAATTAACAGCG 59.257 41.667 15.04 6.61 0.00 5.18
1482 1830 4.084537 CGTAGGAGCATTAATTAACAGCGG 60.085 45.833 15.04 0.00 0.00 5.52
1484 1832 5.031066 AGGAGCATTAATTAACAGCGGTA 57.969 39.130 15.04 0.00 0.00 4.02
1485 1833 5.433526 AGGAGCATTAATTAACAGCGGTAA 58.566 37.500 15.04 0.00 0.00 2.85
1486 1834 6.062095 AGGAGCATTAATTAACAGCGGTAAT 58.938 36.000 15.04 0.00 0.00 1.89
1487 1835 6.017109 AGGAGCATTAATTAACAGCGGTAATG 60.017 38.462 15.04 5.40 35.96 1.90
1488 1836 5.806089 GCATTAATTAACAGCGGTAATGC 57.194 39.130 15.35 15.35 45.55 3.56
1492 1840 7.635423 CATTAATTAACAGCGGTAATGCTACA 58.365 34.615 0.00 0.00 45.23 2.74
1493 1841 5.479716 AATTAACAGCGGTAATGCTACAC 57.520 39.130 0.00 0.00 45.23 2.90
1494 1842 1.355971 AACAGCGGTAATGCTACACG 58.644 50.000 0.00 0.00 45.23 4.49
1500 1848 1.843992 GGTAATGCTACACGTACGGG 58.156 55.000 17.69 17.69 0.00 5.28
1501 1849 1.203065 GTAATGCTACACGTACGGGC 58.797 55.000 19.40 16.32 0.00 6.13
1505 1853 0.037139 TGCTACACGTACGGGCAATT 60.037 50.000 19.40 0.00 0.00 2.32
1508 1856 2.878580 CTACACGTACGGGCAATTACA 58.121 47.619 19.40 0.00 0.00 2.41
1509 1857 1.717194 ACACGTACGGGCAATTACAG 58.283 50.000 19.40 0.00 0.00 2.74
1513 1861 2.288948 ACGTACGGGCAATTACAGACAA 60.289 45.455 21.06 0.00 0.00 3.18
1514 1862 2.737783 CGTACGGGCAATTACAGACAAA 59.262 45.455 7.57 0.00 0.00 2.83
1515 1863 3.181524 CGTACGGGCAATTACAGACAAAG 60.182 47.826 7.57 0.00 0.00 2.77
1517 1865 3.686016 ACGGGCAATTACAGACAAAGAT 58.314 40.909 0.00 0.00 0.00 2.40
1518 1866 4.079253 ACGGGCAATTACAGACAAAGATT 58.921 39.130 0.00 0.00 0.00 2.40
1523 1871 8.402472 CGGGCAATTACAGACAAAGATTAATTA 58.598 33.333 0.00 0.00 0.00 1.40
1529 1877 9.686683 ATTACAGACAAAGATTAATTACAGGCT 57.313 29.630 0.00 0.00 0.00 4.58
1530 1878 7.383102 ACAGACAAAGATTAATTACAGGCTG 57.617 36.000 14.16 14.16 0.00 4.85
1531 1879 7.168219 ACAGACAAAGATTAATTACAGGCTGA 58.832 34.615 23.66 0.00 0.00 4.26
1532 1880 7.335422 ACAGACAAAGATTAATTACAGGCTGAG 59.665 37.037 23.66 0.00 0.00 3.35
1533 1881 6.825721 AGACAAAGATTAATTACAGGCTGAGG 59.174 38.462 23.66 0.00 0.00 3.86
1534 1882 6.485171 ACAAAGATTAATTACAGGCTGAGGT 58.515 36.000 23.66 0.55 0.00 3.85
1536 1884 7.094205 ACAAAGATTAATTACAGGCTGAGGTTG 60.094 37.037 23.66 11.51 0.00 3.77
1537 1885 5.440610 AGATTAATTACAGGCTGAGGTTGG 58.559 41.667 23.66 0.00 0.00 3.77
1539 1887 1.668826 ATTACAGGCTGAGGTTGGGA 58.331 50.000 23.66 0.00 0.00 4.37
1541 1889 1.440618 TACAGGCTGAGGTTGGGAAA 58.559 50.000 23.66 0.00 0.00 3.13
1543 1891 1.147817 ACAGGCTGAGGTTGGGAAAAT 59.852 47.619 23.66 0.00 0.00 1.82
1544 1892 1.547372 CAGGCTGAGGTTGGGAAAATG 59.453 52.381 9.42 0.00 0.00 2.32
1545 1893 1.147817 AGGCTGAGGTTGGGAAAATGT 59.852 47.619 0.00 0.00 0.00 2.71
1546 1894 1.273327 GGCTGAGGTTGGGAAAATGTG 59.727 52.381 0.00 0.00 0.00 3.21
1547 1895 2.238521 GCTGAGGTTGGGAAAATGTGA 58.761 47.619 0.00 0.00 0.00 3.58
1548 1896 2.827921 GCTGAGGTTGGGAAAATGTGAT 59.172 45.455 0.00 0.00 0.00 3.06
1552 1900 3.831911 GAGGTTGGGAAAATGTGATTGGA 59.168 43.478 0.00 0.00 0.00 3.53
1553 1901 4.230455 AGGTTGGGAAAATGTGATTGGAA 58.770 39.130 0.00 0.00 0.00 3.53
1554 1902 4.657969 AGGTTGGGAAAATGTGATTGGAAA 59.342 37.500 0.00 0.00 0.00 3.13
1556 1904 5.221621 GGTTGGGAAAATGTGATTGGAAAGA 60.222 40.000 0.00 0.00 0.00 2.52
1557 1905 6.287525 GTTGGGAAAATGTGATTGGAAAGAA 58.712 36.000 0.00 0.00 0.00 2.52
1558 1906 6.100404 TGGGAAAATGTGATTGGAAAGAAG 57.900 37.500 0.00 0.00 0.00 2.85
1559 1907 5.837979 TGGGAAAATGTGATTGGAAAGAAGA 59.162 36.000 0.00 0.00 0.00 2.87
1560 1908 6.497954 TGGGAAAATGTGATTGGAAAGAAGAT 59.502 34.615 0.00 0.00 0.00 2.40
1561 1909 6.815142 GGGAAAATGTGATTGGAAAGAAGATG 59.185 38.462 0.00 0.00 0.00 2.90
1562 1910 7.381323 GGAAAATGTGATTGGAAAGAAGATGT 58.619 34.615 0.00 0.00 0.00 3.06
1563 1911 7.330208 GGAAAATGTGATTGGAAAGAAGATGTG 59.670 37.037 0.00 0.00 0.00 3.21
1564 1912 6.906157 AATGTGATTGGAAAGAAGATGTGT 57.094 33.333 0.00 0.00 0.00 3.72
1565 1913 5.694231 TGTGATTGGAAAGAAGATGTGTG 57.306 39.130 0.00 0.00 0.00 3.82
1566 1914 4.520111 TGTGATTGGAAAGAAGATGTGTGG 59.480 41.667 0.00 0.00 0.00 4.17
1568 1916 2.584835 TGGAAAGAAGATGTGTGGGG 57.415 50.000 0.00 0.00 0.00 4.96
1569 1917 1.177401 GGAAAGAAGATGTGTGGGGC 58.823 55.000 0.00 0.00 0.00 5.80
1570 1918 0.804989 GAAAGAAGATGTGTGGGGCG 59.195 55.000 0.00 0.00 0.00 6.13
1571 1919 0.609131 AAAGAAGATGTGTGGGGCGG 60.609 55.000 0.00 0.00 0.00 6.13
1572 1920 2.438434 GAAGATGTGTGGGGCGGG 60.438 66.667 0.00 0.00 0.00 6.13
1573 1921 2.933287 AAGATGTGTGGGGCGGGA 60.933 61.111 0.00 0.00 0.00 5.14
1574 1922 3.268103 AAGATGTGTGGGGCGGGAC 62.268 63.158 0.00 0.00 0.00 4.46
1575 1923 4.796495 GATGTGTGGGGCGGGACC 62.796 72.222 0.00 0.00 37.93 4.46
1987 2347 7.950512 AGACAATCACCTCTTCACATATCTAG 58.049 38.462 0.00 0.00 0.00 2.43
2171 2571 4.752457 TGGTCACCCACTACCCAA 57.248 55.556 0.00 0.00 35.17 4.12
2172 2572 2.947208 TGGTCACCCACTACCCAAA 58.053 52.632 0.00 0.00 35.17 3.28
2173 2573 0.768622 TGGTCACCCACTACCCAAAG 59.231 55.000 0.00 0.00 35.17 2.77
2174 2574 0.769247 GGTCACCCACTACCCAAAGT 59.231 55.000 0.00 0.00 0.00 2.66
2175 2575 1.144298 GGTCACCCACTACCCAAAGTT 59.856 52.381 0.00 0.00 0.00 2.66
2176 2576 2.501261 GTCACCCACTACCCAAAGTTC 58.499 52.381 0.00 0.00 0.00 3.01
2177 2577 2.105993 GTCACCCACTACCCAAAGTTCT 59.894 50.000 0.00 0.00 0.00 3.01
2178 2578 3.325716 GTCACCCACTACCCAAAGTTCTA 59.674 47.826 0.00 0.00 0.00 2.10
2179 2579 3.975312 TCACCCACTACCCAAAGTTCTAA 59.025 43.478 0.00 0.00 0.00 2.10
2180 2580 4.412858 TCACCCACTACCCAAAGTTCTAAA 59.587 41.667 0.00 0.00 0.00 1.85
2181 2581 5.073965 TCACCCACTACCCAAAGTTCTAAAT 59.926 40.000 0.00 0.00 0.00 1.40
2182 2582 6.272792 TCACCCACTACCCAAAGTTCTAAATA 59.727 38.462 0.00 0.00 0.00 1.40
2183 2583 6.598064 CACCCACTACCCAAAGTTCTAAATAG 59.402 42.308 0.00 0.00 0.00 1.73
2184 2584 5.589050 CCCACTACCCAAAGTTCTAAATAGC 59.411 44.000 0.00 0.00 0.00 2.97
2185 2585 5.293569 CCACTACCCAAAGTTCTAAATAGCG 59.706 44.000 0.00 0.00 0.00 4.26
2186 2586 4.874396 ACTACCCAAAGTTCTAAATAGCGC 59.126 41.667 0.00 0.00 0.00 5.92
2187 2587 2.676342 ACCCAAAGTTCTAAATAGCGCG 59.324 45.455 0.00 0.00 0.00 6.86
2188 2588 2.538939 CCCAAAGTTCTAAATAGCGCGC 60.539 50.000 26.66 26.66 0.00 6.86
2189 2589 2.351726 CCAAAGTTCTAAATAGCGCGCT 59.648 45.455 38.01 38.01 0.00 5.92
2190 2590 3.554324 CCAAAGTTCTAAATAGCGCGCTA 59.446 43.478 39.72 39.72 0.00 4.26
2191 2591 4.033587 CCAAAGTTCTAAATAGCGCGCTAA 59.966 41.667 40.90 25.56 31.73 3.09
2192 2592 5.191059 CAAAGTTCTAAATAGCGCGCTAAG 58.809 41.667 40.90 32.40 31.73 2.18
2193 2593 4.303086 AGTTCTAAATAGCGCGCTAAGA 57.697 40.909 40.90 33.93 31.73 2.10
2194 2594 4.043073 AGTTCTAAATAGCGCGCTAAGAC 58.957 43.478 40.90 28.40 31.73 3.01
2195 2595 3.984508 TCTAAATAGCGCGCTAAGACT 57.015 42.857 40.90 26.65 31.73 3.24
2196 2596 3.886549 TCTAAATAGCGCGCTAAGACTC 58.113 45.455 40.90 6.44 31.73 3.36
2197 2597 2.873133 AAATAGCGCGCTAAGACTCT 57.127 45.000 40.90 23.18 31.73 3.24
2198 2598 2.873133 AATAGCGCGCTAAGACTCTT 57.127 45.000 40.90 27.25 31.73 2.85
2199 2599 3.984508 AATAGCGCGCTAAGACTCTTA 57.015 42.857 40.90 20.62 31.73 2.10
2200 2600 3.546002 ATAGCGCGCTAAGACTCTTAG 57.454 47.619 40.90 18.24 31.73 2.18
2201 2601 0.248702 AGCGCGCTAAGACTCTTAGC 60.249 55.000 35.79 29.80 42.82 3.09
2205 2605 2.874709 GCTAAGACTCTTAGCGGCG 58.125 57.895 27.36 0.51 38.12 6.46
2206 2606 0.381089 GCTAAGACTCTTAGCGGCGA 59.619 55.000 27.36 0.00 38.12 5.54
2207 2607 1.202268 GCTAAGACTCTTAGCGGCGAA 60.202 52.381 27.36 0.00 38.12 4.70
2208 2608 2.452105 CTAAGACTCTTAGCGGCGAAC 58.548 52.381 12.98 0.00 0.00 3.95
2209 2609 0.108756 AAGACTCTTAGCGGCGAACC 60.109 55.000 12.98 0.00 0.00 3.62
2210 2610 0.966370 AGACTCTTAGCGGCGAACCT 60.966 55.000 12.98 0.00 0.00 3.50
2211 2611 0.525882 GACTCTTAGCGGCGAACCTC 60.526 60.000 12.98 0.00 0.00 3.85
2212 2612 0.966370 ACTCTTAGCGGCGAACCTCT 60.966 55.000 12.98 0.00 34.60 3.69
2213 2613 0.248702 CTCTTAGCGGCGAACCTCTC 60.249 60.000 12.98 0.00 31.87 3.20
2214 2614 1.227002 CTTAGCGGCGAACCTCTCC 60.227 63.158 12.98 0.00 31.87 3.71
2215 2615 1.668101 CTTAGCGGCGAACCTCTCCT 61.668 60.000 12.98 0.00 31.87 3.69
2216 2616 0.394762 TTAGCGGCGAACCTCTCCTA 60.395 55.000 12.98 0.00 31.87 2.94
2217 2617 0.394762 TAGCGGCGAACCTCTCCTAA 60.395 55.000 12.98 0.00 31.87 2.69
2218 2618 1.217244 GCGGCGAACCTCTCCTAAA 59.783 57.895 12.98 0.00 0.00 1.85
2219 2619 1.082679 GCGGCGAACCTCTCCTAAAC 61.083 60.000 12.98 0.00 0.00 2.01
2220 2620 0.801067 CGGCGAACCTCTCCTAAACG 60.801 60.000 0.00 0.00 0.00 3.60
2221 2621 1.082679 GGCGAACCTCTCCTAAACGC 61.083 60.000 0.00 0.00 43.00 4.84
2222 2622 0.108756 GCGAACCTCTCCTAAACGCT 60.109 55.000 0.00 0.00 41.07 5.07
2223 2623 1.133790 GCGAACCTCTCCTAAACGCTA 59.866 52.381 0.00 0.00 41.07 4.26
2224 2624 2.223758 GCGAACCTCTCCTAAACGCTAT 60.224 50.000 0.00 0.00 41.07 2.97
2225 2625 3.004106 GCGAACCTCTCCTAAACGCTATA 59.996 47.826 0.00 0.00 41.07 1.31
2226 2626 4.785417 CGAACCTCTCCTAAACGCTATAG 58.215 47.826 0.00 0.00 0.00 1.31
2227 2627 4.548494 GAACCTCTCCTAAACGCTATAGC 58.452 47.826 15.09 15.09 37.78 2.97
2242 2642 1.983972 ATAGCGTGCTATAGCGAAGC 58.016 50.000 22.98 22.98 45.83 3.86
2259 2659 5.926894 CGAAGCTATATCGCGCTATTTAA 57.073 39.130 7.89 0.00 34.96 1.52
2260 2660 6.313959 CGAAGCTATATCGCGCTATTTAAA 57.686 37.500 7.89 0.00 34.96 1.52
2261 2661 6.748321 CGAAGCTATATCGCGCTATTTAAAA 58.252 36.000 7.89 0.00 34.96 1.52
2262 2662 7.391786 CGAAGCTATATCGCGCTATTTAAAAT 58.608 34.615 7.89 0.00 34.96 1.82
2263 2663 7.368254 CGAAGCTATATCGCGCTATTTAAAATG 59.632 37.037 7.89 0.00 34.96 2.32
2264 2664 7.596749 AGCTATATCGCGCTATTTAAAATGT 57.403 32.000 7.89 0.00 34.11 2.71
2265 2665 8.029642 AGCTATATCGCGCTATTTAAAATGTT 57.970 30.769 7.89 0.00 34.11 2.71
2266 2666 8.504005 AGCTATATCGCGCTATTTAAAATGTTT 58.496 29.630 7.89 0.00 34.11 2.83
2267 2667 9.749490 GCTATATCGCGCTATTTAAAATGTTTA 57.251 29.630 7.89 0.00 0.00 2.01
2271 2671 7.583608 TCGCGCTATTTAAAATGTTTATTCG 57.416 32.000 5.56 0.00 0.00 3.34
2272 2672 7.181418 TCGCGCTATTTAAAATGTTTATTCGT 58.819 30.769 5.56 0.00 0.00 3.85
2273 2673 7.693120 TCGCGCTATTTAAAATGTTTATTCGTT 59.307 29.630 5.56 0.00 0.00 3.85
2274 2674 8.308320 CGCGCTATTTAAAATGTTTATTCGTTT 58.692 29.630 5.56 0.00 0.00 3.60
2275 2675 9.391794 GCGCTATTTAAAATGTTTATTCGTTTG 57.608 29.630 0.00 0.00 0.00 2.93
2283 2683 7.471657 AAATGTTTATTCGTTTGTTTGGACC 57.528 32.000 0.00 0.00 0.00 4.46
2284 2684 5.578005 TGTTTATTCGTTTGTTTGGACCA 57.422 34.783 0.00 0.00 0.00 4.02
2285 2685 5.962433 TGTTTATTCGTTTGTTTGGACCAA 58.038 33.333 1.69 1.69 0.00 3.67
2286 2686 6.574350 TGTTTATTCGTTTGTTTGGACCAAT 58.426 32.000 7.99 0.00 0.00 3.16
2287 2687 6.477033 TGTTTATTCGTTTGTTTGGACCAATG 59.523 34.615 7.99 0.00 0.00 2.82
2288 2688 4.664150 ATTCGTTTGTTTGGACCAATGT 57.336 36.364 7.99 0.00 0.00 2.71
2289 2689 3.701532 TCGTTTGTTTGGACCAATGTC 57.298 42.857 7.99 2.92 40.98 3.06
2290 2690 3.283751 TCGTTTGTTTGGACCAATGTCT 58.716 40.909 7.99 0.00 41.47 3.41
2291 2691 3.314080 TCGTTTGTTTGGACCAATGTCTC 59.686 43.478 7.99 0.00 41.47 3.36
2292 2692 3.315191 CGTTTGTTTGGACCAATGTCTCT 59.685 43.478 7.99 0.00 41.47 3.10
2293 2693 4.202010 CGTTTGTTTGGACCAATGTCTCTT 60.202 41.667 7.99 0.00 41.47 2.85
2294 2694 5.008217 CGTTTGTTTGGACCAATGTCTCTTA 59.992 40.000 7.99 0.00 41.47 2.10
2295 2695 6.438763 GTTTGTTTGGACCAATGTCTCTTAG 58.561 40.000 7.99 0.00 41.47 2.18
2296 2696 4.072131 TGTTTGGACCAATGTCTCTTAGC 58.928 43.478 7.99 0.00 41.47 3.09
2297 2697 2.672961 TGGACCAATGTCTCTTAGCG 57.327 50.000 0.00 0.00 41.47 4.26
2298 2698 1.291132 GGACCAATGTCTCTTAGCGC 58.709 55.000 0.00 0.00 41.47 5.92
2299 2699 1.405526 GGACCAATGTCTCTTAGCGCA 60.406 52.381 11.47 0.00 41.47 6.09
2300 2700 2.346803 GACCAATGTCTCTTAGCGCAA 58.653 47.619 11.47 0.50 38.53 4.85
2301 2701 2.349886 GACCAATGTCTCTTAGCGCAAG 59.650 50.000 11.47 11.67 38.53 4.01
2302 2702 2.028112 ACCAATGTCTCTTAGCGCAAGA 60.028 45.455 11.47 15.40 41.10 3.02
2303 2703 2.349886 CCAATGTCTCTTAGCGCAAGAC 59.650 50.000 11.47 16.64 38.39 3.01
2304 2704 2.301577 ATGTCTCTTAGCGCAAGACC 57.698 50.000 21.57 14.10 38.39 3.85
2305 2705 1.257743 TGTCTCTTAGCGCAAGACCT 58.742 50.000 21.57 0.46 38.39 3.85
2306 2706 2.443416 TGTCTCTTAGCGCAAGACCTA 58.557 47.619 21.57 8.26 38.39 3.08
2307 2707 3.024547 TGTCTCTTAGCGCAAGACCTAT 58.975 45.455 21.57 0.00 38.39 2.57
2308 2708 3.447586 TGTCTCTTAGCGCAAGACCTATT 59.552 43.478 21.57 0.00 38.39 1.73
2309 2709 3.799420 GTCTCTTAGCGCAAGACCTATTG 59.201 47.826 11.47 4.34 38.39 1.90
2310 2710 3.447586 TCTCTTAGCGCAAGACCTATTGT 59.552 43.478 11.47 0.00 38.39 2.71
2311 2711 4.643334 TCTCTTAGCGCAAGACCTATTGTA 59.357 41.667 11.47 0.00 38.39 2.41
2312 2712 5.126545 TCTCTTAGCGCAAGACCTATTGTAA 59.873 40.000 11.47 0.00 38.39 2.41
2313 2713 5.726397 TCTTAGCGCAAGACCTATTGTAAA 58.274 37.500 11.47 0.00 38.39 2.01
2314 2714 6.346096 TCTTAGCGCAAGACCTATTGTAAAT 58.654 36.000 11.47 0.00 38.39 1.40
2315 2715 4.882671 AGCGCAAGACCTATTGTAAATG 57.117 40.909 11.47 0.00 43.02 2.32
2316 2716 3.065371 AGCGCAAGACCTATTGTAAATGC 59.935 43.478 11.47 0.00 43.02 3.56
2317 2717 3.065371 GCGCAAGACCTATTGTAAATGCT 59.935 43.478 0.30 0.00 43.02 3.79
2318 2718 4.272504 GCGCAAGACCTATTGTAAATGCTA 59.727 41.667 0.30 0.00 43.02 3.49
2319 2719 5.049405 GCGCAAGACCTATTGTAAATGCTAT 60.049 40.000 0.30 0.00 43.02 2.97
2320 2720 6.147164 GCGCAAGACCTATTGTAAATGCTATA 59.853 38.462 0.30 0.00 43.02 1.31
2321 2721 7.622256 GCGCAAGACCTATTGTAAATGCTATAG 60.622 40.741 0.30 0.00 43.02 1.31
2322 2722 7.522374 GCAAGACCTATTGTAAATGCTATAGC 58.478 38.462 18.18 18.18 35.60 2.97
2323 2723 7.622256 GCAAGACCTATTGTAAATGCTATAGCG 60.622 40.741 19.55 3.54 36.84 4.26
2324 2724 6.994221 AGACCTATTGTAAATGCTATAGCGT 58.006 36.000 19.55 16.84 45.83 5.07
2325 2725 6.868864 AGACCTATTGTAAATGCTATAGCGTG 59.131 38.462 20.02 6.86 45.83 5.34
2326 2726 5.408604 ACCTATTGTAAATGCTATAGCGTGC 59.591 40.000 20.02 13.30 45.83 5.34
2327 2727 5.639506 CCTATTGTAAATGCTATAGCGTGCT 59.360 40.000 20.02 12.62 45.83 4.40
2328 2728 6.811665 CCTATTGTAAATGCTATAGCGTGCTA 59.188 38.462 20.02 11.68 45.83 3.49
2329 2729 7.492669 CCTATTGTAAATGCTATAGCGTGCTAT 59.507 37.037 20.02 17.65 45.83 2.97
2330 2730 9.516314 CTATTGTAAATGCTATAGCGTGCTATA 57.484 33.333 20.02 17.96 45.83 1.31
2336 2736 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
2337 2737 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
2351 2751 0.320771 CGGAGCAATAGCGGGCTATT 60.321 55.000 17.80 17.80 46.58 1.73
2352 2752 1.878102 CGGAGCAATAGCGGGCTATTT 60.878 52.381 20.25 9.64 44.18 1.40
2353 2753 2.611971 CGGAGCAATAGCGGGCTATTTA 60.612 50.000 20.25 0.00 44.18 1.40
2354 2754 3.408634 GGAGCAATAGCGGGCTATTTAA 58.591 45.455 20.25 0.00 44.18 1.52
2355 2755 3.818773 GGAGCAATAGCGGGCTATTTAAA 59.181 43.478 20.25 0.00 44.18 1.52
2356 2756 4.277423 GGAGCAATAGCGGGCTATTTAAAA 59.723 41.667 20.25 0.00 44.18 1.52
2357 2757 5.183014 AGCAATAGCGGGCTATTTAAAAC 57.817 39.130 20.25 9.84 44.18 2.43
2358 2758 4.642885 AGCAATAGCGGGCTATTTAAAACA 59.357 37.500 20.25 0.00 44.18 2.83
2359 2759 5.126384 AGCAATAGCGGGCTATTTAAAACAA 59.874 36.000 20.25 0.00 44.18 2.83
2360 2760 5.983118 GCAATAGCGGGCTATTTAAAACAAT 59.017 36.000 20.25 0.00 44.18 2.71
2361 2761 6.074356 GCAATAGCGGGCTATTTAAAACAATG 60.074 38.462 20.25 10.00 44.18 2.82
2416 2816 0.247460 TCTCCTGCCAAGTGATCACG 59.753 55.000 19.85 7.49 36.20 4.35
2479 2887 1.671845 GAGTGCAGTACTACTCCTCGG 59.328 57.143 12.94 0.00 40.53 4.63
2499 2908 3.237628 GGCAAGAGCGTTCTTTGATTTC 58.762 45.455 12.23 0.00 41.71 2.17
2584 3016 2.210116 GGTTCTTCTTCGTGCACAAGA 58.790 47.619 18.64 19.89 0.00 3.02
2837 3276 2.004017 CGCAAAGGTACGGCAAGATTA 58.996 47.619 0.00 0.00 0.00 1.75
2855 3324 0.754217 TAGATTGTCCCCGTCTCCCG 60.754 60.000 0.00 0.00 0.00 5.14
2856 3325 2.284405 ATTGTCCCCGTCTCCCGT 60.284 61.111 0.00 0.00 33.66 5.28
2857 3326 2.294132 GATTGTCCCCGTCTCCCGTC 62.294 65.000 0.00 0.00 33.66 4.79
2858 3327 2.800159 ATTGTCCCCGTCTCCCGTCT 62.800 60.000 0.00 0.00 33.66 4.18
2859 3328 3.139469 GTCCCCGTCTCCCGTCTC 61.139 72.222 0.00 0.00 33.66 3.36
2860 3329 4.437587 TCCCCGTCTCCCGTCTCC 62.438 72.222 0.00 0.00 33.66 3.71
2919 3420 3.971453 CTGGACATGTCGCGCTCGT 62.971 63.158 19.33 0.00 36.96 4.18
2926 3427 1.014044 ATGTCGCGCTCGTGATTTGT 61.014 50.000 5.56 0.00 36.98 2.83
2927 3428 0.387494 TGTCGCGCTCGTGATTTGTA 60.387 50.000 5.56 0.00 36.98 2.41
2931 3432 1.588404 CGCGCTCGTGATTTGTATCTT 59.412 47.619 5.56 0.00 0.00 2.40
2977 3492 3.594775 CAACCTGCCTGTTGCGCA 61.595 61.111 5.66 5.66 45.60 6.09
3120 3638 4.823442 ACTTGCTCAACAATGATGACTTGA 59.177 37.500 0.00 0.00 37.72 3.02
3134 3658 0.865769 ACTTGATCAACAACGCCGAC 59.134 50.000 3.38 0.00 34.56 4.79
3165 3707 2.594303 CCGGCCTGCTTGACAACA 60.594 61.111 0.00 0.00 0.00 3.33
3193 3735 0.176449 CCGATGCTCATGGACTCACA 59.824 55.000 0.00 0.00 0.00 3.58
3198 3740 1.973515 TGCTCATGGACTCACAGTCTT 59.026 47.619 3.75 0.00 44.46 3.01
3203 3745 2.375766 GGACTCACAGTCTTGCGCG 61.376 63.158 0.00 0.00 44.46 6.86
3343 3894 0.036765 AACTACTTCATGCCGGCGAA 60.037 50.000 23.90 18.71 0.00 4.70
3345 3896 0.179111 CTACTTCATGCCGGCGAAGA 60.179 55.000 35.95 25.31 40.94 2.87
3388 3939 3.705811 GGTACTCACCCTACCAGGT 57.294 57.895 0.00 0.00 42.40 4.00
3544 4113 2.276306 GTCGTCGCGGTCGTACTC 60.276 66.667 19.63 9.04 36.96 2.59
3545 4114 3.842126 TCGTCGCGGTCGTACTCG 61.842 66.667 19.63 7.64 36.96 4.18
3546 4115 4.139420 CGTCGCGGTCGTACTCGT 62.139 66.667 6.13 0.00 38.33 4.18
3547 4116 2.788176 CGTCGCGGTCGTACTCGTA 61.788 63.158 6.13 0.00 38.33 3.43
3548 4117 1.296216 GTCGCGGTCGTACTCGTAC 60.296 63.158 6.13 0.00 38.33 3.67
3549 4118 2.021931 CGCGGTCGTACTCGTACC 59.978 66.667 0.00 0.00 38.33 3.34
3656 4243 3.868077 GTCTCAGTTTGCTGGTAGCTATG 59.132 47.826 0.00 0.00 42.97 2.23
3723 4343 8.397906 TGCTTCATTAACTTTCGATTAAGGATG 58.602 33.333 5.49 8.39 33.67 3.51
3801 4431 2.691526 CAAGGCATAATGCTGGTGTGAT 59.308 45.455 0.00 0.00 44.28 3.06
3819 4450 4.406972 TGTGATGGAGGGAGTTCTGATTAG 59.593 45.833 0.00 0.00 0.00 1.73
3820 4451 4.407296 GTGATGGAGGGAGTTCTGATTAGT 59.593 45.833 0.00 0.00 0.00 2.24
3821 4452 5.032846 TGATGGAGGGAGTTCTGATTAGTT 58.967 41.667 0.00 0.00 0.00 2.24
3822 4453 6.098409 GTGATGGAGGGAGTTCTGATTAGTTA 59.902 42.308 0.00 0.00 0.00 2.24
3823 4454 6.672218 TGATGGAGGGAGTTCTGATTAGTTAA 59.328 38.462 0.00 0.00 0.00 2.01
3824 4455 7.348274 TGATGGAGGGAGTTCTGATTAGTTAAT 59.652 37.037 0.00 0.00 0.00 1.40
3825 4456 7.125792 TGGAGGGAGTTCTGATTAGTTAATC 57.874 40.000 5.18 5.18 41.81 1.75
3826 4457 6.903534 TGGAGGGAGTTCTGATTAGTTAATCT 59.096 38.462 11.86 0.00 41.93 2.40
3827 4458 7.403231 TGGAGGGAGTTCTGATTAGTTAATCTT 59.597 37.037 11.86 0.00 41.93 2.40
3847 4478 6.769134 TCTTAGAGTCAATTACATCGGTGA 57.231 37.500 0.65 0.00 0.00 4.02
3908 4539 4.397420 ACTTGTGGCATACATTGAACTGA 58.603 39.130 0.00 0.00 39.48 3.41
3924 4555 4.523943 TGAACTGATGCAATAACTTGGCTT 59.476 37.500 0.00 0.00 32.72 4.35
3950 4581 3.192466 GTGCAAATACGGTCCTAATCGT 58.808 45.455 0.00 0.00 42.55 3.73
4017 4648 0.320421 GGCCTGCTGTCAACGACTTA 60.320 55.000 0.00 0.00 33.15 2.24
4027 4658 4.496360 TGTCAACGACTTAAAGTGTGTGA 58.504 39.130 0.00 0.00 33.15 3.58
4034 4665 4.260212 CGACTTAAAGTGTGTGACCTGTTG 60.260 45.833 0.00 0.00 0.00 3.33
4190 4828 1.425412 ACATTCGAACACGCACTACC 58.575 50.000 0.00 0.00 0.00 3.18
4193 4831 3.475774 CGAACACGCACTACCGCC 61.476 66.667 0.00 0.00 0.00 6.13
4202 4840 3.075005 ACTACCGCCAGGACGCAT 61.075 61.111 0.00 0.00 41.02 4.73
4501 5207 7.621219 GCGGGCACTTAAAATGTTTAAAGAATG 60.621 37.037 0.00 0.00 0.00 2.67
5002 5738 2.115052 AAATGGGCCGCACTGACA 59.885 55.556 0.00 0.00 0.00 3.58
5043 5779 3.181499 ACAAGCACCTCTATTCGACTACG 60.181 47.826 0.00 0.00 41.26 3.51
5044 5780 1.948145 AGCACCTCTATTCGACTACGG 59.052 52.381 0.00 0.00 40.21 4.02
5045 5781 1.001597 GCACCTCTATTCGACTACGGG 60.002 57.143 0.00 0.00 40.21 5.28
5046 5782 2.569059 CACCTCTATTCGACTACGGGA 58.431 52.381 0.00 0.00 40.21 5.14
5047 5783 2.947652 CACCTCTATTCGACTACGGGAA 59.052 50.000 0.00 0.00 40.21 3.97
5048 5784 3.568853 CACCTCTATTCGACTACGGGAAT 59.431 47.826 0.00 0.00 40.21 3.01
5049 5785 4.037684 CACCTCTATTCGACTACGGGAATT 59.962 45.833 0.00 0.00 40.21 2.17
5050 5786 4.648307 ACCTCTATTCGACTACGGGAATTT 59.352 41.667 0.00 0.00 40.21 1.82
5051 5787 5.128335 ACCTCTATTCGACTACGGGAATTTT 59.872 40.000 0.00 0.00 40.21 1.82
5052 5788 6.047231 CCTCTATTCGACTACGGGAATTTTT 58.953 40.000 0.00 0.00 40.21 1.94
5053 5789 6.018994 CCTCTATTCGACTACGGGAATTTTTG 60.019 42.308 0.00 0.00 40.21 2.44
5054 5790 4.957759 ATTCGACTACGGGAATTTTTGG 57.042 40.909 0.00 0.00 40.21 3.28
5055 5791 3.405823 TCGACTACGGGAATTTTTGGT 57.594 42.857 0.00 0.00 40.21 3.67
5056 5792 3.328505 TCGACTACGGGAATTTTTGGTC 58.671 45.455 0.00 0.00 40.21 4.02
5057 5793 3.007182 TCGACTACGGGAATTTTTGGTCT 59.993 43.478 0.00 0.00 40.21 3.85
5058 5794 4.220382 TCGACTACGGGAATTTTTGGTCTA 59.780 41.667 0.00 0.00 40.21 2.59
5059 5795 5.105228 TCGACTACGGGAATTTTTGGTCTAT 60.105 40.000 0.00 0.00 40.21 1.98
5060 5796 5.006358 CGACTACGGGAATTTTTGGTCTATG 59.994 44.000 0.00 0.00 35.72 2.23
5061 5797 5.190677 ACTACGGGAATTTTTGGTCTATGG 58.809 41.667 0.00 0.00 0.00 2.74
5062 5798 3.361786 ACGGGAATTTTTGGTCTATGGG 58.638 45.455 0.00 0.00 0.00 4.00
5063 5799 2.693074 CGGGAATTTTTGGTCTATGGGG 59.307 50.000 0.00 0.00 0.00 4.96
5064 5800 3.626222 CGGGAATTTTTGGTCTATGGGGA 60.626 47.826 0.00 0.00 0.00 4.81
5065 5801 3.704566 GGGAATTTTTGGTCTATGGGGAC 59.295 47.826 0.00 0.00 35.66 4.46
5081 5817 5.114764 TGGGGACATATGCACCATATATG 57.885 43.478 14.74 5.68 41.85 1.78
5082 5818 4.079844 TGGGGACATATGCACCATATATGG 60.080 45.833 27.16 27.16 45.10 2.74
5083 5819 6.295592 TGGGGACATATGCACCATATATGGA 61.296 44.000 33.82 15.44 43.23 3.41
5084 5820 7.729753 TGGGGACATATGCACCATATATGGAA 61.730 42.308 33.82 20.15 43.23 3.53
5085 5821 9.131089 TGGGGACATATGCACCATATATGGAAA 62.131 40.741 33.82 19.84 43.23 3.13
5121 5857 8.839310 TTCAACAAAAAGTCAAAAATTCCTGA 57.161 26.923 0.00 0.00 0.00 3.86
5122 5858 8.839310 TCAACAAAAAGTCAAAAATTCCTGAA 57.161 26.923 0.00 0.00 0.00 3.02
5123 5859 9.277783 TCAACAAAAAGTCAAAAATTCCTGAAA 57.722 25.926 0.00 0.00 0.00 2.69
5124 5860 9.890352 CAACAAAAAGTCAAAAATTCCTGAAAA 57.110 25.926 0.00 0.00 0.00 2.29
5160 5896 8.928270 ATAAACTTGACCTTCTATTGTACTCG 57.072 34.615 0.00 0.00 0.00 4.18
5161 5897 5.979288 ACTTGACCTTCTATTGTACTCGT 57.021 39.130 0.00 0.00 0.00 4.18
5162 5898 5.710984 ACTTGACCTTCTATTGTACTCGTG 58.289 41.667 0.00 0.00 0.00 4.35
5163 5899 5.475909 ACTTGACCTTCTATTGTACTCGTGA 59.524 40.000 0.00 0.00 0.00 4.35
5164 5900 5.562506 TGACCTTCTATTGTACTCGTGAG 57.437 43.478 0.00 0.00 0.00 3.51
5165 5901 5.250982 TGACCTTCTATTGTACTCGTGAGA 58.749 41.667 3.44 0.00 39.12 3.27
5166 5902 5.708697 TGACCTTCTATTGTACTCGTGAGAA 59.291 40.000 3.44 0.00 41.32 2.87
5167 5903 6.208007 TGACCTTCTATTGTACTCGTGAGAAA 59.792 38.462 3.44 0.00 41.32 2.52
5168 5904 6.989659 ACCTTCTATTGTACTCGTGAGAAAA 58.010 36.000 3.44 0.00 41.32 2.29
5169 5905 7.439381 ACCTTCTATTGTACTCGTGAGAAAAA 58.561 34.615 3.44 0.00 41.32 1.94
5244 5980 8.586570 TTTTGGCAAAAATAGTGTGAATAGTG 57.413 30.769 22.24 0.00 30.24 2.74
5245 5981 7.517614 TTGGCAAAAATAGTGTGAATAGTGA 57.482 32.000 0.00 0.00 0.00 3.41
5246 5982 6.908825 TGGCAAAAATAGTGTGAATAGTGAC 58.091 36.000 0.00 0.00 0.00 3.67
5247 5983 6.072175 TGGCAAAAATAGTGTGAATAGTGACC 60.072 38.462 0.00 0.00 0.00 4.02
5248 5984 6.151144 GGCAAAAATAGTGTGAATAGTGACCT 59.849 38.462 0.00 0.00 0.00 3.85
5249 5985 7.335924 GGCAAAAATAGTGTGAATAGTGACCTA 59.664 37.037 0.00 0.00 0.00 3.08
5250 5986 8.893727 GCAAAAATAGTGTGAATAGTGACCTAT 58.106 33.333 0.00 0.00 35.33 2.57
5257 5993 8.478775 AGTGTGAATAGTGACCTATAATAGCA 57.521 34.615 0.00 0.00 32.57 3.49
5258 5994 8.924303 AGTGTGAATAGTGACCTATAATAGCAA 58.076 33.333 0.00 0.00 32.57 3.91
5259 5995 9.542462 GTGTGAATAGTGACCTATAATAGCAAA 57.458 33.333 0.00 0.00 32.57 3.68
5293 6029 4.799564 TTTTTGCTGTGAGGTCAACTTT 57.200 36.364 0.00 0.00 0.00 2.66
5294 6030 4.799564 TTTTGCTGTGAGGTCAACTTTT 57.200 36.364 0.00 0.00 0.00 2.27
5295 6031 4.799564 TTTGCTGTGAGGTCAACTTTTT 57.200 36.364 0.00 0.00 0.00 1.94
5328 6064 8.945758 TTTCGTCGAGATTTATATACTAGTGC 57.054 34.615 5.39 0.00 0.00 4.40
5329 6065 7.662604 TCGTCGAGATTTATATACTAGTGCA 57.337 36.000 5.39 0.00 0.00 4.57
5330 6066 8.091385 TCGTCGAGATTTATATACTAGTGCAA 57.909 34.615 5.39 0.00 0.00 4.08
5331 6067 8.562052 TCGTCGAGATTTATATACTAGTGCAAA 58.438 33.333 5.39 0.89 0.00 3.68
5332 6068 9.177304 CGTCGAGATTTATATACTAGTGCAAAA 57.823 33.333 5.39 1.60 0.00 2.44
5344 6080 6.604735 ACTAGTGCAAAAGTAAGTCAAGTG 57.395 37.500 0.00 0.00 0.00 3.16
5345 6081 6.113411 ACTAGTGCAAAAGTAAGTCAAGTGT 58.887 36.000 0.00 0.00 0.00 3.55
5346 6082 5.897377 AGTGCAAAAGTAAGTCAAGTGTT 57.103 34.783 0.00 0.00 0.00 3.32
5347 6083 6.267496 AGTGCAAAAGTAAGTCAAGTGTTT 57.733 33.333 0.00 0.00 0.00 2.83
5348 6084 6.687604 AGTGCAAAAGTAAGTCAAGTGTTTT 58.312 32.000 0.00 0.00 0.00 2.43
5349 6085 6.586082 AGTGCAAAAGTAAGTCAAGTGTTTTG 59.414 34.615 0.00 0.00 37.74 2.44
5350 6086 6.364976 GTGCAAAAGTAAGTCAAGTGTTTTGT 59.635 34.615 0.00 0.00 37.26 2.83
5351 6087 6.584563 TGCAAAAGTAAGTCAAGTGTTTTGTC 59.415 34.615 0.00 0.00 37.26 3.18
5352 6088 6.584563 GCAAAAGTAAGTCAAGTGTTTTGTCA 59.415 34.615 0.00 0.00 37.26 3.58
5353 6089 7.115663 GCAAAAGTAAGTCAAGTGTTTTGTCAA 59.884 33.333 0.00 0.00 37.26 3.18
5354 6090 8.973378 CAAAAGTAAGTCAAGTGTTTTGTCAAA 58.027 29.630 0.00 0.00 32.65 2.69
5355 6091 9.535878 AAAAGTAAGTCAAGTGTTTTGTCAAAA 57.464 25.926 6.65 6.65 0.00 2.44
5356 6092 9.705290 AAAGTAAGTCAAGTGTTTTGTCAAAAT 57.295 25.926 13.65 0.00 32.22 1.82
5359 6095 9.783256 GTAAGTCAAGTGTTTTGTCAAAATAGT 57.217 29.630 13.65 11.04 32.22 2.12
5361 6097 9.705290 AAGTCAAGTGTTTTGTCAAAATAGTTT 57.295 25.926 19.54 10.28 34.29 2.66
5362 6098 9.705290 AGTCAAGTGTTTTGTCAAAATAGTTTT 57.295 25.926 19.54 9.84 34.29 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
196 205 1.928503 CCATTAATGTCGGCGTTACGT 59.071 47.619 14.25 0.00 34.94 3.57
207 216 1.795170 GCCCGATGCGCCATTAATGT 61.795 55.000 14.25 0.00 0.00 2.71
273 283 4.922026 GTGTGGACGGGCGGTTGT 62.922 66.667 0.00 0.00 0.00 3.32
301 312 2.431942 GCGACGTGTGGGAACGAT 60.432 61.111 0.00 0.00 46.49 3.73
348 360 2.554636 TACTCGTGGCGACGTGGTT 61.555 57.895 23.66 9.37 46.20 3.67
349 361 2.979676 TACTCGTGGCGACGTGGT 60.980 61.111 23.66 21.74 46.20 4.16
610 652 7.703197 GCAGGTAGAAGACTCTCATAGTAAAAC 59.297 40.741 0.00 0.00 39.07 2.43
621 663 1.004979 AGACGGCAGGTAGAAGACTCT 59.995 52.381 0.00 0.00 35.52 3.24
692 734 7.202526 GCTATTTTTATGCAGTGCCTAATCAA 58.797 34.615 13.72 9.65 0.00 2.57
738 780 0.320946 TAAGGGTACTGCACAACGCC 60.321 55.000 7.02 1.67 41.33 5.68
755 797 2.503331 TCTCACTAACCGGACACGTAA 58.497 47.619 9.46 0.00 38.78 3.18
811 859 1.128692 GCATACCAGTCTGCGTTGTTC 59.871 52.381 0.00 0.00 0.00 3.18
824 872 1.271856 TCCGGAGTGAAAGCATACCA 58.728 50.000 0.00 0.00 0.00 3.25
857 908 4.039488 TGCAGCCACAGAAAATTCAGAAAT 59.961 37.500 0.00 0.00 0.00 2.17
887 945 1.671054 GCTGTTTCTAGCGTGGCCA 60.671 57.895 0.00 0.00 33.46 5.36
917 975 6.335471 TGAAAGATACCAGTAACAACGAGA 57.665 37.500 0.00 0.00 0.00 4.04
956 1014 4.446234 CGATAATTCGTCCAAGAATTCGC 58.554 43.478 8.04 2.56 44.76 4.70
957 1015 4.608445 GCCGATAATTCGTCCAAGAATTCG 60.608 45.833 8.04 7.31 44.76 3.34
965 1023 1.593209 GCGGCCGATAATTCGTCCA 60.593 57.895 33.48 0.00 43.49 4.02
993 1051 5.888724 TCCTTTCTGTTTTTATGTGTGACCA 59.111 36.000 0.00 0.00 0.00 4.02
1003 1061 5.127491 ACATCGGTGTCCTTTCTGTTTTTA 58.873 37.500 0.00 0.00 31.41 1.52
1012 1070 1.336755 GTGCAAACATCGGTGTCCTTT 59.663 47.619 0.00 0.00 37.67 3.11
1014 1072 0.108585 AGTGCAAACATCGGTGTCCT 59.891 50.000 0.00 0.00 37.67 3.85
1047 1105 7.168219 AGTTGTTAATGATCATGTACACACCT 58.832 34.615 17.94 10.27 0.00 4.00
1059 1117 6.147821 ACACACACAGCTAGTTGTTAATGATC 59.852 38.462 9.81 0.00 0.00 2.92
1074 1132 7.330946 TGTTATTCTACTTGATACACACACAGC 59.669 37.037 0.00 0.00 0.00 4.40
1177 1510 5.167978 CGCTAAATTCTTTCTTTCGCGATTC 59.832 40.000 10.88 0.00 45.22 2.52
1185 1526 4.079253 TCCTGCCGCTAAATTCTTTCTTT 58.921 39.130 0.00 0.00 0.00 2.52
1217 1558 0.736325 AACGCTGAAATCGTCGGAGG 60.736 55.000 0.00 0.00 39.48 4.30
1251 1592 1.077645 CGCAATTTGAATGCCGGTGG 61.078 55.000 1.90 0.00 40.72 4.61
1254 1595 1.519013 CCCGCAATTTGAATGCCGG 60.519 57.895 0.00 0.00 40.72 6.13
1350 1698 9.685828 GCTACATATCCCGCAAAAATAATTAAA 57.314 29.630 0.00 0.00 0.00 1.52
1357 1705 4.202111 GGTTGCTACATATCCCGCAAAAAT 60.202 41.667 0.00 0.00 43.11 1.82
1387 1735 7.174413 TGGATAACAACTGGAATCATCAAGAA 58.826 34.615 0.00 0.00 30.49 2.52
1432 1780 1.668419 GGCTAAGCATGTCCGAATGT 58.332 50.000 0.00 0.00 0.00 2.71
1475 1823 1.337447 ACGTGTAGCATTACCGCTGTT 60.337 47.619 0.00 0.00 43.68 3.16
1478 1826 1.532505 CGTACGTGTAGCATTACCGCT 60.533 52.381 7.22 0.00 46.26 5.52
1481 1829 1.843992 CCCGTACGTGTAGCATTACC 58.156 55.000 15.21 0.00 0.00 2.85
1482 1830 1.203065 GCCCGTACGTGTAGCATTAC 58.797 55.000 15.21 0.00 0.00 1.89
1484 1832 0.037139 TTGCCCGTACGTGTAGCATT 60.037 50.000 15.21 0.00 32.67 3.56
1485 1833 0.177141 ATTGCCCGTACGTGTAGCAT 59.823 50.000 15.21 5.51 32.67 3.79
1486 1834 0.037139 AATTGCCCGTACGTGTAGCA 60.037 50.000 15.21 14.11 0.00 3.49
1487 1835 1.589779 GTAATTGCCCGTACGTGTAGC 59.410 52.381 15.21 11.67 0.00 3.58
1488 1836 2.855963 CTGTAATTGCCCGTACGTGTAG 59.144 50.000 15.21 0.00 0.00 2.74
1492 1840 1.273048 TGTCTGTAATTGCCCGTACGT 59.727 47.619 15.21 0.00 0.00 3.57
1493 1841 1.999048 TGTCTGTAATTGCCCGTACG 58.001 50.000 8.69 8.69 0.00 3.67
1494 1842 3.998341 TCTTTGTCTGTAATTGCCCGTAC 59.002 43.478 0.00 0.00 0.00 3.67
1505 1853 8.318412 TCAGCCTGTAATTAATCTTTGTCTGTA 58.682 33.333 0.00 0.00 0.00 2.74
1508 1856 6.825721 CCTCAGCCTGTAATTAATCTTTGTCT 59.174 38.462 0.00 0.00 0.00 3.41
1509 1857 6.599638 ACCTCAGCCTGTAATTAATCTTTGTC 59.400 38.462 0.00 0.00 0.00 3.18
1513 1861 5.888161 CCAACCTCAGCCTGTAATTAATCTT 59.112 40.000 0.00 0.00 0.00 2.40
1514 1862 5.440610 CCAACCTCAGCCTGTAATTAATCT 58.559 41.667 0.00 0.00 0.00 2.40
1515 1863 4.580580 CCCAACCTCAGCCTGTAATTAATC 59.419 45.833 0.00 0.00 0.00 1.75
1517 1865 3.589735 TCCCAACCTCAGCCTGTAATTAA 59.410 43.478 0.00 0.00 0.00 1.40
1518 1866 3.186283 TCCCAACCTCAGCCTGTAATTA 58.814 45.455 0.00 0.00 0.00 1.40
1523 1871 0.555769 TTTTCCCAACCTCAGCCTGT 59.444 50.000 0.00 0.00 0.00 4.00
1525 1873 1.147817 ACATTTTCCCAACCTCAGCCT 59.852 47.619 0.00 0.00 0.00 4.58
1527 1875 2.238521 TCACATTTTCCCAACCTCAGC 58.761 47.619 0.00 0.00 0.00 4.26
1529 1877 3.577848 CCAATCACATTTTCCCAACCTCA 59.422 43.478 0.00 0.00 0.00 3.86
1530 1878 3.831911 TCCAATCACATTTTCCCAACCTC 59.168 43.478 0.00 0.00 0.00 3.85
1531 1879 3.855668 TCCAATCACATTTTCCCAACCT 58.144 40.909 0.00 0.00 0.00 3.50
1532 1880 4.615588 TTCCAATCACATTTTCCCAACC 57.384 40.909 0.00 0.00 0.00 3.77
1533 1881 5.852827 TCTTTCCAATCACATTTTCCCAAC 58.147 37.500 0.00 0.00 0.00 3.77
1534 1882 6.326064 TCTTCTTTCCAATCACATTTTCCCAA 59.674 34.615 0.00 0.00 0.00 4.12
1536 1884 6.345096 TCTTCTTTCCAATCACATTTTCCC 57.655 37.500 0.00 0.00 0.00 3.97
1537 1885 7.330208 CACATCTTCTTTCCAATCACATTTTCC 59.670 37.037 0.00 0.00 0.00 3.13
1539 1887 7.654520 CACACATCTTCTTTCCAATCACATTTT 59.345 33.333 0.00 0.00 0.00 1.82
1541 1889 6.294899 CCACACATCTTCTTTCCAATCACATT 60.295 38.462 0.00 0.00 0.00 2.71
1543 1891 4.520111 CCACACATCTTCTTTCCAATCACA 59.480 41.667 0.00 0.00 0.00 3.58
1544 1892 4.082571 CCCACACATCTTCTTTCCAATCAC 60.083 45.833 0.00 0.00 0.00 3.06
1545 1893 4.081406 CCCACACATCTTCTTTCCAATCA 58.919 43.478 0.00 0.00 0.00 2.57
1546 1894 3.445096 CCCCACACATCTTCTTTCCAATC 59.555 47.826 0.00 0.00 0.00 2.67
1547 1895 3.434309 CCCCACACATCTTCTTTCCAAT 58.566 45.455 0.00 0.00 0.00 3.16
1548 1896 2.875296 CCCCACACATCTTCTTTCCAA 58.125 47.619 0.00 0.00 0.00 3.53
1552 1900 0.609131 CCGCCCCACACATCTTCTTT 60.609 55.000 0.00 0.00 0.00 2.52
1553 1901 1.002134 CCGCCCCACACATCTTCTT 60.002 57.895 0.00 0.00 0.00 2.52
1554 1902 2.671070 CCGCCCCACACATCTTCT 59.329 61.111 0.00 0.00 0.00 2.85
1556 1904 2.933287 TCCCGCCCCACACATCTT 60.933 61.111 0.00 0.00 0.00 2.40
1557 1905 3.717294 GTCCCGCCCCACACATCT 61.717 66.667 0.00 0.00 0.00 2.90
1558 1906 4.796495 GGTCCCGCCCCACACATC 62.796 72.222 0.00 0.00 0.00 3.06
1976 2324 4.402829 GCTGAGGAGGACTAGATATGTGA 58.597 47.826 0.00 0.00 0.00 3.58
2035 2403 0.671251 CACCCTCTCGGATCTACTGC 59.329 60.000 0.00 0.00 34.64 4.40
2071 2450 1.884464 CAGATCCATCACCGCCGTG 60.884 63.158 0.00 0.00 41.72 4.94
2166 2566 2.676342 CGCGCTATTTAGAACTTTGGGT 59.324 45.455 5.56 0.00 0.00 4.51
2167 2567 2.538939 GCGCGCTATTTAGAACTTTGGG 60.539 50.000 26.67 0.00 0.00 4.12
2168 2568 2.351726 AGCGCGCTATTTAGAACTTTGG 59.648 45.455 35.79 0.00 0.00 3.28
2169 2569 3.658351 AGCGCGCTATTTAGAACTTTG 57.342 42.857 35.79 0.00 0.00 2.77
2170 2570 5.005490 GTCTTAGCGCGCTATTTAGAACTTT 59.995 40.000 38.51 13.72 0.00 2.66
2171 2571 4.503370 GTCTTAGCGCGCTATTTAGAACTT 59.497 41.667 38.51 13.94 0.00 2.66
2172 2572 4.043073 GTCTTAGCGCGCTATTTAGAACT 58.957 43.478 38.51 14.50 0.00 3.01
2173 2573 4.043073 AGTCTTAGCGCGCTATTTAGAAC 58.957 43.478 38.51 27.43 0.00 3.01
2174 2574 4.036498 AGAGTCTTAGCGCGCTATTTAGAA 59.964 41.667 38.51 24.43 0.00 2.10
2175 2575 3.564644 AGAGTCTTAGCGCGCTATTTAGA 59.435 43.478 38.51 32.83 0.00 2.10
2176 2576 3.891324 AGAGTCTTAGCGCGCTATTTAG 58.109 45.455 38.51 31.27 0.00 1.85
2177 2577 3.984508 AGAGTCTTAGCGCGCTATTTA 57.015 42.857 38.51 24.25 0.00 1.40
2178 2578 2.873133 AGAGTCTTAGCGCGCTATTT 57.127 45.000 38.51 24.06 0.00 1.40
2179 2579 2.873133 AAGAGTCTTAGCGCGCTATT 57.127 45.000 38.51 26.01 0.00 1.73
2180 2580 2.350964 GCTAAGAGTCTTAGCGCGCTAT 60.351 50.000 36.69 25.42 38.12 2.97
2181 2581 1.002684 GCTAAGAGTCTTAGCGCGCTA 60.003 52.381 36.69 35.48 38.12 4.26
2182 2582 0.248702 GCTAAGAGTCTTAGCGCGCT 60.249 55.000 36.69 38.01 38.12 5.92
2183 2583 2.208973 GCTAAGAGTCTTAGCGCGC 58.791 57.895 36.69 26.66 38.12 6.86
2187 2587 0.381089 TCGCCGCTAAGAGTCTTAGC 59.619 55.000 38.44 38.44 42.82 3.09
2188 2588 2.452105 GTTCGCCGCTAAGAGTCTTAG 58.548 52.381 28.53 28.53 0.00 2.18
2189 2589 1.133790 GGTTCGCCGCTAAGAGTCTTA 59.866 52.381 12.05 12.05 0.00 2.10
2190 2590 0.108756 GGTTCGCCGCTAAGAGTCTT 60.109 55.000 10.87 10.87 0.00 3.01
2191 2591 0.966370 AGGTTCGCCGCTAAGAGTCT 60.966 55.000 0.00 0.00 43.66 3.24
2192 2592 0.525882 GAGGTTCGCCGCTAAGAGTC 60.526 60.000 0.00 0.00 43.66 3.36
2193 2593 0.966370 AGAGGTTCGCCGCTAAGAGT 60.966 55.000 0.00 0.00 45.82 3.24
2194 2594 1.810532 AGAGGTTCGCCGCTAAGAG 59.189 57.895 0.00 0.00 45.82 2.85
2195 2595 4.013702 AGAGGTTCGCCGCTAAGA 57.986 55.556 0.00 0.00 45.82 2.10
2200 2600 1.082679 GTTTAGGAGAGGTTCGCCGC 61.083 60.000 0.00 0.00 41.52 6.53
2201 2601 0.801067 CGTTTAGGAGAGGTTCGCCG 60.801 60.000 0.00 0.00 41.52 6.46
2202 2602 1.082679 GCGTTTAGGAGAGGTTCGCC 61.083 60.000 0.00 0.00 36.52 5.54
2203 2603 0.108756 AGCGTTTAGGAGAGGTTCGC 60.109 55.000 0.00 0.00 41.96 4.70
2204 2604 3.712091 ATAGCGTTTAGGAGAGGTTCG 57.288 47.619 0.00 0.00 0.00 3.95
2205 2605 4.548494 GCTATAGCGTTTAGGAGAGGTTC 58.452 47.826 9.40 0.00 0.00 3.62
2206 2606 4.587584 GCTATAGCGTTTAGGAGAGGTT 57.412 45.455 9.40 0.00 0.00 3.50
2222 2622 2.747989 AGCTTCGCTATAGCACGCTATA 59.252 45.455 23.99 15.99 41.11 1.31
2223 2623 1.542030 AGCTTCGCTATAGCACGCTAT 59.458 47.619 23.99 15.45 41.11 2.97
2224 2624 0.952280 AGCTTCGCTATAGCACGCTA 59.048 50.000 23.99 0.39 41.11 4.26
2225 2625 0.952280 TAGCTTCGCTATAGCACGCT 59.048 50.000 25.78 25.78 41.11 5.07
2226 2626 3.474007 TAGCTTCGCTATAGCACGC 57.526 52.632 23.99 20.26 41.11 5.34
2237 2637 5.926894 TTAAATAGCGCGATATAGCTTCG 57.073 39.130 18.33 1.88 44.15 3.79
2238 2638 8.169268 ACATTTTAAATAGCGCGATATAGCTTC 58.831 33.333 18.33 0.00 44.15 3.86
2239 2639 8.029642 ACATTTTAAATAGCGCGATATAGCTT 57.970 30.769 18.33 10.93 44.15 3.74
2240 2640 7.596749 ACATTTTAAATAGCGCGATATAGCT 57.403 32.000 18.33 7.94 46.53 3.32
2241 2641 8.655378 AAACATTTTAAATAGCGCGATATAGC 57.345 30.769 18.33 0.00 0.00 2.97
2245 2645 9.308623 CGAATAAACATTTTAAATAGCGCGATA 57.691 29.630 12.10 9.16 0.00 2.92
2246 2646 7.853929 ACGAATAAACATTTTAAATAGCGCGAT 59.146 29.630 12.10 5.99 0.00 4.58
2247 2647 7.181418 ACGAATAAACATTTTAAATAGCGCGA 58.819 30.769 12.10 0.00 0.00 5.87
2248 2648 7.358450 ACGAATAAACATTTTAAATAGCGCG 57.642 32.000 0.00 0.00 0.00 6.86
2249 2649 9.391794 CAAACGAATAAACATTTTAAATAGCGC 57.608 29.630 0.00 0.00 0.00 5.92
2257 2657 9.032420 GGTCCAAACAAACGAATAAACATTTTA 57.968 29.630 0.00 0.00 0.00 1.52
2258 2658 7.549488 TGGTCCAAACAAACGAATAAACATTTT 59.451 29.630 0.00 0.00 0.00 1.82
2259 2659 7.042335 TGGTCCAAACAAACGAATAAACATTT 58.958 30.769 0.00 0.00 0.00 2.32
2260 2660 6.574350 TGGTCCAAACAAACGAATAAACATT 58.426 32.000 0.00 0.00 0.00 2.71
2261 2661 6.150396 TGGTCCAAACAAACGAATAAACAT 57.850 33.333 0.00 0.00 0.00 2.71
2262 2662 5.578005 TGGTCCAAACAAACGAATAAACA 57.422 34.783 0.00 0.00 0.00 2.83
2263 2663 6.477360 ACATTGGTCCAAACAAACGAATAAAC 59.523 34.615 8.75 0.00 0.00 2.01
2264 2664 6.574350 ACATTGGTCCAAACAAACGAATAAA 58.426 32.000 8.75 0.00 0.00 1.40
2265 2665 6.039941 AGACATTGGTCCAAACAAACGAATAA 59.960 34.615 8.75 0.00 45.48 1.40
2266 2666 5.533154 AGACATTGGTCCAAACAAACGAATA 59.467 36.000 8.75 0.00 45.48 1.75
2267 2667 4.340950 AGACATTGGTCCAAACAAACGAAT 59.659 37.500 8.75 0.00 45.48 3.34
2268 2668 3.697045 AGACATTGGTCCAAACAAACGAA 59.303 39.130 8.75 0.00 45.48 3.85
2269 2669 3.283751 AGACATTGGTCCAAACAAACGA 58.716 40.909 8.75 0.00 45.48 3.85
2270 2670 3.315191 AGAGACATTGGTCCAAACAAACG 59.685 43.478 8.75 0.00 45.48 3.60
2271 2671 4.918810 AGAGACATTGGTCCAAACAAAC 57.081 40.909 8.75 1.23 45.48 2.93
2272 2672 5.009610 GCTAAGAGACATTGGTCCAAACAAA 59.990 40.000 8.75 0.00 45.48 2.83
2273 2673 4.518970 GCTAAGAGACATTGGTCCAAACAA 59.481 41.667 8.75 0.00 45.48 2.83
2274 2674 4.072131 GCTAAGAGACATTGGTCCAAACA 58.928 43.478 8.75 0.00 45.48 2.83
2275 2675 3.125316 CGCTAAGAGACATTGGTCCAAAC 59.875 47.826 8.75 3.71 45.48 2.93
2276 2676 3.334691 CGCTAAGAGACATTGGTCCAAA 58.665 45.455 8.75 0.00 45.48 3.28
2277 2677 2.935238 GCGCTAAGAGACATTGGTCCAA 60.935 50.000 6.80 6.80 45.48 3.53
2278 2678 1.405526 GCGCTAAGAGACATTGGTCCA 60.406 52.381 0.00 0.00 45.48 4.02
2279 2679 1.291132 GCGCTAAGAGACATTGGTCC 58.709 55.000 0.00 0.00 45.48 4.46
2280 2680 2.010145 TGCGCTAAGAGACATTGGTC 57.990 50.000 9.73 0.00 44.66 4.02
2281 2681 2.028112 TCTTGCGCTAAGAGACATTGGT 60.028 45.455 9.73 0.00 40.43 3.67
2282 2682 2.349886 GTCTTGCGCTAAGAGACATTGG 59.650 50.000 18.44 0.00 45.71 3.16
2283 2683 2.349886 GGTCTTGCGCTAAGAGACATTG 59.650 50.000 24.20 0.79 45.71 2.82
2284 2684 2.234908 AGGTCTTGCGCTAAGAGACATT 59.765 45.455 24.20 14.78 45.71 2.71
2285 2685 1.827969 AGGTCTTGCGCTAAGAGACAT 59.172 47.619 24.20 18.84 45.71 3.06
2286 2686 1.257743 AGGTCTTGCGCTAAGAGACA 58.742 50.000 24.20 5.74 45.71 3.41
2287 2687 3.719173 ATAGGTCTTGCGCTAAGAGAC 57.281 47.619 18.44 18.59 45.71 3.36
2288 2688 3.447586 ACAATAGGTCTTGCGCTAAGAGA 59.552 43.478 18.44 9.99 45.71 3.10
2289 2689 3.786635 ACAATAGGTCTTGCGCTAAGAG 58.213 45.455 18.44 10.73 45.71 2.85
2290 2690 3.887621 ACAATAGGTCTTGCGCTAAGA 57.112 42.857 9.73 13.31 43.01 2.10
2291 2691 6.422223 CATTTACAATAGGTCTTGCGCTAAG 58.578 40.000 9.73 11.02 37.76 2.18
2292 2692 5.220777 GCATTTACAATAGGTCTTGCGCTAA 60.221 40.000 9.73 0.00 0.00 3.09
2293 2693 4.272504 GCATTTACAATAGGTCTTGCGCTA 59.727 41.667 9.73 0.00 0.00 4.26
2294 2694 3.065371 GCATTTACAATAGGTCTTGCGCT 59.935 43.478 9.73 0.00 0.00 5.92
2295 2695 3.065371 AGCATTTACAATAGGTCTTGCGC 59.935 43.478 0.00 0.00 35.26 6.09
2296 2696 4.882671 AGCATTTACAATAGGTCTTGCG 57.117 40.909 0.00 0.00 35.26 4.85
2297 2697 7.522374 GCTATAGCATTTACAATAGGTCTTGC 58.478 38.462 20.01 0.00 41.59 4.01
2298 2698 7.385205 ACGCTATAGCATTTACAATAGGTCTTG 59.615 37.037 23.99 4.07 42.21 3.02
2299 2699 7.385205 CACGCTATAGCATTTACAATAGGTCTT 59.615 37.037 23.99 0.00 42.21 3.01
2300 2700 6.868864 CACGCTATAGCATTTACAATAGGTCT 59.131 38.462 23.99 0.00 42.21 3.85
2301 2701 6.401153 GCACGCTATAGCATTTACAATAGGTC 60.401 42.308 23.99 1.53 42.21 3.85
2302 2702 5.408604 GCACGCTATAGCATTTACAATAGGT 59.591 40.000 23.99 6.60 42.21 3.08
2303 2703 5.639506 AGCACGCTATAGCATTTACAATAGG 59.360 40.000 23.99 5.98 42.21 2.57
2304 2704 6.712241 AGCACGCTATAGCATTTACAATAG 57.288 37.500 23.99 6.48 42.21 1.73
2305 2705 9.516314 CTATAGCACGCTATAGCATTTACAATA 57.484 33.333 25.42 10.94 46.26 1.90
2306 2706 8.412608 CTATAGCACGCTATAGCATTTACAAT 57.587 34.615 25.42 10.43 46.26 2.71
2307 2707 7.812309 CTATAGCACGCTATAGCATTTACAA 57.188 36.000 25.42 3.88 46.26 2.41
2317 2717 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
2318 2718 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
2319 2719 1.170290 TGCTCCGCTATAGCACGCTA 61.170 55.000 23.99 0.39 44.78 4.26
2320 2720 2.336809 GCTCCGCTATAGCACGCT 59.663 61.111 23.99 0.00 42.21 5.07
2321 2721 2.027605 TGCTCCGCTATAGCACGC 59.972 61.111 23.99 20.54 44.78 5.34
2326 2726 1.469940 CCCGCTATTGCTCCGCTATAG 60.470 57.143 11.26 11.26 43.45 1.31
2327 2727 0.530744 CCCGCTATTGCTCCGCTATA 59.469 55.000 0.00 0.00 36.97 1.31
2328 2728 1.293498 CCCGCTATTGCTCCGCTAT 59.707 57.895 0.00 0.00 36.97 2.97
2329 2729 2.734591 CCCGCTATTGCTCCGCTA 59.265 61.111 0.00 0.00 36.97 4.26
2330 2730 4.918201 GCCCGCTATTGCTCCGCT 62.918 66.667 0.00 0.00 36.97 5.52
2331 2731 2.788191 ATAGCCCGCTATTGCTCCGC 62.788 60.000 3.31 0.00 39.00 5.54
2332 2732 0.320771 AATAGCCCGCTATTGCTCCG 60.321 55.000 18.74 0.00 44.68 4.63
2333 2733 1.897560 AAATAGCCCGCTATTGCTCC 58.102 50.000 19.84 0.00 45.37 4.70
2334 2734 5.212934 GTTTTAAATAGCCCGCTATTGCTC 58.787 41.667 19.84 8.06 45.37 4.26
2335 2735 4.642885 TGTTTTAAATAGCCCGCTATTGCT 59.357 37.500 19.84 9.93 45.37 3.91
2336 2736 4.927422 TGTTTTAAATAGCCCGCTATTGC 58.073 39.130 19.84 10.32 45.37 3.56
2337 2737 6.074356 GCATTGTTTTAAATAGCCCGCTATTG 60.074 38.462 19.84 8.31 45.37 1.90
2339 2739 5.508994 GGCATTGTTTTAAATAGCCCGCTAT 60.509 40.000 3.31 3.31 40.63 2.97
2340 2740 4.202070 GGCATTGTTTTAAATAGCCCGCTA 60.202 41.667 0.00 0.00 32.30 4.26
2341 2741 3.430236 GGCATTGTTTTAAATAGCCCGCT 60.430 43.478 0.00 0.00 32.30 5.52
2342 2742 2.863740 GGCATTGTTTTAAATAGCCCGC 59.136 45.455 0.00 0.00 32.30 6.13
2343 2743 3.862845 GTGGCATTGTTTTAAATAGCCCG 59.137 43.478 0.00 0.00 35.03 6.13
2344 2744 5.084818 AGTGGCATTGTTTTAAATAGCCC 57.915 39.130 0.00 0.00 35.03 5.19
2345 2745 6.040247 GGTAGTGGCATTGTTTTAAATAGCC 58.960 40.000 0.00 0.00 35.78 3.93
2346 2746 6.863275 AGGTAGTGGCATTGTTTTAAATAGC 58.137 36.000 0.00 0.00 0.00 2.97
2347 2747 7.968405 GTGAGGTAGTGGCATTGTTTTAAATAG 59.032 37.037 0.00 0.00 0.00 1.73
2348 2748 7.094118 GGTGAGGTAGTGGCATTGTTTTAAATA 60.094 37.037 0.00 0.00 0.00 1.40
2349 2749 6.295067 GGTGAGGTAGTGGCATTGTTTTAAAT 60.295 38.462 0.00 0.00 0.00 1.40
2350 2750 5.010213 GGTGAGGTAGTGGCATTGTTTTAAA 59.990 40.000 0.00 0.00 0.00 1.52
2351 2751 4.521256 GGTGAGGTAGTGGCATTGTTTTAA 59.479 41.667 0.00 0.00 0.00 1.52
2352 2752 4.076394 GGTGAGGTAGTGGCATTGTTTTA 58.924 43.478 0.00 0.00 0.00 1.52
2353 2753 2.890945 GGTGAGGTAGTGGCATTGTTTT 59.109 45.455 0.00 0.00 0.00 2.43
2354 2754 2.514803 GGTGAGGTAGTGGCATTGTTT 58.485 47.619 0.00 0.00 0.00 2.83
2355 2755 1.271926 GGGTGAGGTAGTGGCATTGTT 60.272 52.381 0.00 0.00 0.00 2.83
2356 2756 0.328258 GGGTGAGGTAGTGGCATTGT 59.672 55.000 0.00 0.00 0.00 2.71
2357 2757 0.744414 CGGGTGAGGTAGTGGCATTG 60.744 60.000 0.00 0.00 0.00 2.82
2358 2758 1.602237 CGGGTGAGGTAGTGGCATT 59.398 57.895 0.00 0.00 0.00 3.56
2359 2759 3.031417 GCGGGTGAGGTAGTGGCAT 62.031 63.158 0.00 0.00 0.00 4.40
2360 2760 3.702048 GCGGGTGAGGTAGTGGCA 61.702 66.667 0.00 0.00 0.00 4.92
2361 2761 3.248446 TTGCGGGTGAGGTAGTGGC 62.248 63.158 0.00 0.00 0.00 5.01
2416 2816 0.313043 TCTTGTTGAGGTCGACGTCC 59.687 55.000 29.52 18.34 32.90 4.79
2479 2887 3.888934 TGAAATCAAAGAACGCTCTTGC 58.111 40.909 1.04 0.00 41.23 4.01
2820 3252 5.497474 ACAATCTAATCTTGCCGTACCTTT 58.503 37.500 0.00 0.00 0.00 3.11
2837 3276 2.058595 CGGGAGACGGGGACAATCT 61.059 63.158 0.00 0.00 39.42 2.40
2860 3329 1.804326 GGTTCGACCGATCACCACG 60.804 63.158 8.04 0.00 0.00 4.94
2861 3330 4.180496 GGTTCGACCGATCACCAC 57.820 61.111 8.04 0.00 0.00 4.16
2926 3427 9.706691 AACACGAGAAGAATAAGAAACAAGATA 57.293 29.630 0.00 0.00 0.00 1.98
2927 3428 8.499162 CAACACGAGAAGAATAAGAAACAAGAT 58.501 33.333 0.00 0.00 0.00 2.40
2931 3432 5.758296 AGCAACACGAGAAGAATAAGAAACA 59.242 36.000 0.00 0.00 0.00 2.83
3120 3638 2.325082 GCAGGTCGGCGTTGTTGAT 61.325 57.895 6.85 0.00 0.00 2.57
3165 3707 1.620739 ATGAGCATCGGCAGGTCAGT 61.621 55.000 8.92 0.00 45.38 3.41
3193 3735 3.208884 AAGTCGTCCGCGCAAGACT 62.209 57.895 13.05 13.05 44.81 3.24
3320 3865 0.451783 CCGGCATGAAGTAGTTTGGC 59.548 55.000 0.00 0.00 0.00 4.52
3343 3894 1.244019 GCCAAGATTGCCGTTGGTCT 61.244 55.000 3.21 0.00 44.48 3.85
3345 3896 2.625823 CGCCAAGATTGCCGTTGGT 61.626 57.895 3.21 0.00 44.48 3.67
3388 3939 3.016971 CCTGCTGGTCCCCCATGA 61.017 66.667 0.51 0.00 40.90 3.07
3549 4118 1.066908 GAACAGCTCCTCCAGATCGAG 59.933 57.143 0.00 0.00 0.00 4.04
3575 4144 1.960689 GAGTAGTCCATGAGAGGCTCC 59.039 57.143 11.71 3.35 0.00 4.70
3613 4182 1.539929 GCTCCGGATCTTCCACATCAG 60.540 57.143 3.57 0.00 35.91 2.90
3614 4183 0.465705 GCTCCGGATCTTCCACATCA 59.534 55.000 3.57 0.00 35.91 3.07
3656 4243 5.507985 GCTAGCATCAACCAAATAACCATCC 60.508 44.000 10.63 0.00 0.00 3.51
3723 4343 2.093341 TCACCACCGCCTAATTAACTCC 60.093 50.000 0.00 0.00 0.00 3.85
3801 4431 6.903534 AGATTAACTAATCAGAACTCCCTCCA 59.096 38.462 11.15 0.00 43.43 3.86
3819 4450 9.530633 ACCGATGTAATTGACTCTAAGATTAAC 57.469 33.333 0.00 0.00 0.00 2.01
3820 4451 9.529325 CACCGATGTAATTGACTCTAAGATTAA 57.471 33.333 0.00 0.00 0.00 1.40
3821 4452 8.909923 TCACCGATGTAATTGACTCTAAGATTA 58.090 33.333 0.00 0.00 0.00 1.75
3822 4453 7.782049 TCACCGATGTAATTGACTCTAAGATT 58.218 34.615 0.00 0.00 0.00 2.40
3823 4454 7.348080 TCACCGATGTAATTGACTCTAAGAT 57.652 36.000 0.00 0.00 0.00 2.40
3824 4455 6.769134 TCACCGATGTAATTGACTCTAAGA 57.231 37.500 0.00 0.00 0.00 2.10
3825 4456 6.074088 GCATCACCGATGTAATTGACTCTAAG 60.074 42.308 5.90 0.00 41.60 2.18
3826 4457 5.753438 GCATCACCGATGTAATTGACTCTAA 59.247 40.000 5.90 0.00 41.60 2.10
3827 4458 5.069119 AGCATCACCGATGTAATTGACTCTA 59.931 40.000 5.90 0.00 41.60 2.43
3841 4472 1.522668 CCAAGTTCAAGCATCACCGA 58.477 50.000 0.00 0.00 0.00 4.69
3847 4478 2.350388 CGTTTACGCCAAGTTCAAGCAT 60.350 45.455 0.00 0.00 0.00 3.79
3908 4539 3.324556 ACAACCAAGCCAAGTTATTGCAT 59.675 39.130 0.00 0.00 34.91 3.96
3924 4555 1.202830 AGGACCGTATTTGCACAACCA 60.203 47.619 0.00 0.00 0.00 3.67
3950 4581 5.056480 CAGCGTTGATTTCCTATCCATACA 58.944 41.667 0.00 0.00 0.00 2.29
4017 4648 4.555262 CAAAACAACAGGTCACACACTTT 58.445 39.130 0.00 0.00 0.00 2.66
4075 4708 2.616842 ACCACGTGAACATGGTCTTTTC 59.383 45.455 19.30 0.00 46.62 2.29
4131 4766 6.371809 TTCTTTTAGTTTTCACGTCAGCAT 57.628 33.333 0.00 0.00 0.00 3.79
4190 4828 3.792053 GAGGGTATGCGTCCTGGCG 62.792 68.421 6.22 6.22 32.74 5.69
4193 4831 0.179100 CTGTGAGGGTATGCGTCCTG 60.179 60.000 0.00 0.00 32.74 3.86
4202 4840 3.702048 GCCGTGGCTGTGAGGGTA 61.702 66.667 2.98 0.00 38.26 3.69
4266 4907 4.207955 TCGAGAGTACATCTGCAGGTAAT 58.792 43.478 15.13 8.35 38.84 1.89
4267 4908 3.617284 TCGAGAGTACATCTGCAGGTAA 58.383 45.455 15.13 0.00 38.84 2.85
4270 4911 3.510388 TTTCGAGAGTACATCTGCAGG 57.490 47.619 15.13 0.36 38.84 4.85
4301 4998 0.255890 AAATGGGCCGCACTATCTGT 59.744 50.000 0.00 0.00 0.00 3.41
5002 5738 2.679716 GGGCTGGAATGGACTGCT 59.320 61.111 0.00 0.00 33.87 4.24
5043 5779 3.704566 GTCCCCATAGACCAAAAATTCCC 59.295 47.826 0.00 0.00 0.00 3.97
5044 5780 4.349365 TGTCCCCATAGACCAAAAATTCC 58.651 43.478 0.00 0.00 35.83 3.01
5045 5781 7.661040 CATATGTCCCCATAGACCAAAAATTC 58.339 38.462 0.00 0.00 36.99 2.17
5046 5782 6.041979 GCATATGTCCCCATAGACCAAAAATT 59.958 38.462 4.29 0.00 36.99 1.82
5047 5783 5.539955 GCATATGTCCCCATAGACCAAAAAT 59.460 40.000 4.29 0.00 36.99 1.82
5048 5784 4.892934 GCATATGTCCCCATAGACCAAAAA 59.107 41.667 4.29 0.00 36.99 1.94
5049 5785 4.079500 TGCATATGTCCCCATAGACCAAAA 60.080 41.667 4.29 0.00 36.99 2.44
5050 5786 3.461458 TGCATATGTCCCCATAGACCAAA 59.539 43.478 4.29 0.00 36.99 3.28
5051 5787 3.052329 TGCATATGTCCCCATAGACCAA 58.948 45.455 4.29 0.00 36.99 3.67
5052 5788 2.371841 GTGCATATGTCCCCATAGACCA 59.628 50.000 4.29 0.00 36.99 4.02
5053 5789 2.290323 GGTGCATATGTCCCCATAGACC 60.290 54.545 4.29 0.00 36.99 3.85
5054 5790 2.371841 TGGTGCATATGTCCCCATAGAC 59.628 50.000 4.29 0.00 36.99 2.59
5055 5791 2.700354 TGGTGCATATGTCCCCATAGA 58.300 47.619 4.29 0.00 36.99 1.98
5056 5792 3.726557 ATGGTGCATATGTCCCCATAG 57.273 47.619 16.49 0.00 36.99 2.23
5057 5793 6.183361 CCATATATGGTGCATATGTCCCCATA 60.183 42.308 21.85 21.77 43.05 2.74
5058 5794 5.399382 CCATATATGGTGCATATGTCCCCAT 60.399 44.000 21.85 19.80 43.05 4.00
5059 5795 4.079844 CCATATATGGTGCATATGTCCCCA 60.080 45.833 21.85 8.39 43.05 4.96
5060 5796 4.464008 CCATATATGGTGCATATGTCCCC 58.536 47.826 21.85 2.80 43.05 4.81
5095 5831 9.447157 TCAGGAATTTTTGACTTTTTGTTGAAT 57.553 25.926 0.00 0.00 0.00 2.57
5096 5832 8.839310 TCAGGAATTTTTGACTTTTTGTTGAA 57.161 26.923 0.00 0.00 0.00 2.69
5097 5833 8.839310 TTCAGGAATTTTTGACTTTTTGTTGA 57.161 26.923 0.00 0.00 0.00 3.18
5098 5834 9.890352 TTTTCAGGAATTTTTGACTTTTTGTTG 57.110 25.926 0.00 0.00 0.00 3.33
5134 5870 9.367444 CGAGTACAATAGAAGGTCAAGTTTATT 57.633 33.333 0.00 0.00 0.00 1.40
5135 5871 8.529476 ACGAGTACAATAGAAGGTCAAGTTTAT 58.471 33.333 0.00 0.00 0.00 1.40
5136 5872 7.811236 CACGAGTACAATAGAAGGTCAAGTTTA 59.189 37.037 0.00 0.00 0.00 2.01
5137 5873 6.645415 CACGAGTACAATAGAAGGTCAAGTTT 59.355 38.462 0.00 0.00 0.00 2.66
5138 5874 6.015688 TCACGAGTACAATAGAAGGTCAAGTT 60.016 38.462 0.00 0.00 0.00 2.66
5139 5875 5.475909 TCACGAGTACAATAGAAGGTCAAGT 59.524 40.000 0.00 0.00 0.00 3.16
5140 5876 5.950883 TCACGAGTACAATAGAAGGTCAAG 58.049 41.667 0.00 0.00 0.00 3.02
5141 5877 5.708697 TCTCACGAGTACAATAGAAGGTCAA 59.291 40.000 0.00 0.00 0.00 3.18
5142 5878 5.250982 TCTCACGAGTACAATAGAAGGTCA 58.749 41.667 0.00 0.00 0.00 4.02
5143 5879 5.814764 TCTCACGAGTACAATAGAAGGTC 57.185 43.478 0.00 0.00 0.00 3.85
5144 5880 6.585695 TTTCTCACGAGTACAATAGAAGGT 57.414 37.500 0.00 0.00 0.00 3.50
5145 5881 7.884816 TTTTTCTCACGAGTACAATAGAAGG 57.115 36.000 0.00 0.00 0.00 3.46
5218 5954 9.039870 CACTATTCACACTATTTTTGCCAAAAA 57.960 29.630 16.94 16.94 43.76 1.94
5219 5955 8.417106 TCACTATTCACACTATTTTTGCCAAAA 58.583 29.630 0.00 0.00 36.30 2.44
5220 5956 7.865385 GTCACTATTCACACTATTTTTGCCAAA 59.135 33.333 0.00 0.00 0.00 3.28
5221 5957 7.367285 GTCACTATTCACACTATTTTTGCCAA 58.633 34.615 0.00 0.00 0.00 4.52
5222 5958 6.072175 GGTCACTATTCACACTATTTTTGCCA 60.072 38.462 0.00 0.00 0.00 4.92
5223 5959 6.151144 AGGTCACTATTCACACTATTTTTGCC 59.849 38.462 0.00 0.00 0.00 4.52
5224 5960 7.145932 AGGTCACTATTCACACTATTTTTGC 57.854 36.000 0.00 0.00 0.00 3.68
5231 5967 9.582648 TGCTATTATAGGTCACTATTCACACTA 57.417 33.333 1.12 0.00 40.35 2.74
5232 5968 8.478775 TGCTATTATAGGTCACTATTCACACT 57.521 34.615 1.12 0.00 40.35 3.55
5233 5969 9.542462 TTTGCTATTATAGGTCACTATTCACAC 57.458 33.333 1.12 0.00 40.35 3.82
5272 6008 4.799564 AAAGTTGACCTCACAGCAAAAA 57.200 36.364 0.00 0.00 0.00 1.94
5273 6009 4.799564 AAAAGTTGACCTCACAGCAAAA 57.200 36.364 0.00 0.00 0.00 2.44
5274 6010 4.799564 AAAAAGTTGACCTCACAGCAAA 57.200 36.364 0.00 0.00 0.00 3.68
5302 6038 9.390795 GCACTAGTATATAAATCTCGACGAAAA 57.609 33.333 0.00 0.00 0.00 2.29
5303 6039 8.562052 TGCACTAGTATATAAATCTCGACGAAA 58.438 33.333 0.00 0.00 0.00 3.46
5304 6040 8.091385 TGCACTAGTATATAAATCTCGACGAA 57.909 34.615 0.00 0.00 0.00 3.85
5305 6041 7.662604 TGCACTAGTATATAAATCTCGACGA 57.337 36.000 0.00 0.00 0.00 4.20
5306 6042 8.723777 TTTGCACTAGTATATAAATCTCGACG 57.276 34.615 0.00 0.00 0.00 5.12
5318 6054 9.419297 CACTTGACTTACTTTTGCACTAGTATA 57.581 33.333 7.69 0.00 0.00 1.47
5319 6055 7.931948 ACACTTGACTTACTTTTGCACTAGTAT 59.068 33.333 7.69 0.00 0.00 2.12
5320 6056 7.270047 ACACTTGACTTACTTTTGCACTAGTA 58.730 34.615 0.00 3.57 0.00 1.82
5321 6057 6.113411 ACACTTGACTTACTTTTGCACTAGT 58.887 36.000 5.34 5.34 0.00 2.57
5322 6058 6.604735 ACACTTGACTTACTTTTGCACTAG 57.395 37.500 0.00 0.00 0.00 2.57
5323 6059 6.995511 AACACTTGACTTACTTTTGCACTA 57.004 33.333 0.00 0.00 0.00 2.74
5324 6060 5.897377 AACACTTGACTTACTTTTGCACT 57.103 34.783 0.00 0.00 0.00 4.40
5325 6061 6.364976 ACAAAACACTTGACTTACTTTTGCAC 59.635 34.615 0.00 0.00 33.72 4.57
5326 6062 6.451393 ACAAAACACTTGACTTACTTTTGCA 58.549 32.000 0.00 0.00 33.72 4.08
5327 6063 6.584563 TGACAAAACACTTGACTTACTTTTGC 59.415 34.615 0.00 0.00 33.72 3.68
5328 6064 8.514136 TTGACAAAACACTTGACTTACTTTTG 57.486 30.769 0.00 0.00 35.61 2.44
5329 6065 9.535878 TTTTGACAAAACACTTGACTTACTTTT 57.464 25.926 9.30 0.00 0.00 2.27
5330 6066 9.705290 ATTTTGACAAAACACTTGACTTACTTT 57.295 25.926 15.36 0.00 32.37 2.66
5333 6069 9.783256 ACTATTTTGACAAAACACTTGACTTAC 57.217 29.630 15.36 0.00 32.37 2.34
5335 6071 9.705290 AAACTATTTTGACAAAACACTTGACTT 57.295 25.926 15.36 0.00 32.37 3.01
5336 6072 9.705290 AAAACTATTTTGACAAAACACTTGACT 57.295 25.926 15.36 0.44 32.37 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.