Multiple sequence alignment - TraesCS2B01G117900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G117900 chr2B 100.000 4391 0 0 1 4391 81754633 81759023 0.000000e+00 8109.0
1 TraesCS2B01G117900 chr2B 100.000 28 0 0 3132 3159 365571278 365571251 8.000000e-03 52.8
2 TraesCS2B01G117900 chr2D 90.230 2047 84 47 59 2047 52226371 52228359 0.000000e+00 2566.0
3 TraesCS2B01G117900 chr2D 93.456 1085 39 11 3316 4378 52229309 52230383 0.000000e+00 1581.0
4 TraesCS2B01G117900 chr2D 90.598 819 56 15 2286 3103 52228431 52229229 0.000000e+00 1066.0
5 TraesCS2B01G117900 chr2D 88.000 175 19 2 3140 3314 585858106 585858278 5.760000e-49 206.0
6 TraesCS2B01G117900 chr2A 90.403 1761 79 39 59 1769 53781759 53783479 0.000000e+00 2233.0
7 TraesCS2B01G117900 chr2A 93.531 912 36 15 2242 3140 53783801 53784702 0.000000e+00 1336.0
8 TraesCS2B01G117900 chr2A 89.483 1103 50 34 3316 4378 53784721 53785797 0.000000e+00 1334.0
9 TraesCS2B01G117900 chr2A 87.261 314 22 6 1752 2047 53783486 53783799 4.210000e-90 342.0
10 TraesCS2B01G117900 chr4B 93.805 226 13 1 1035 1259 382692079 382692304 5.440000e-89 339.0
11 TraesCS2B01G117900 chr4D 93.421 228 14 1 1035 1261 306795482 306795709 1.960000e-88 337.0
12 TraesCS2B01G117900 chr4A 92.920 226 15 1 1035 1259 170710869 170710644 1.180000e-85 327.0
13 TraesCS2B01G117900 chr4A 91.558 154 12 1 3173 3325 164254255 164254102 1.240000e-50 211.0
14 TraesCS2B01G117900 chr7A 98.266 173 3 0 2046 2218 610448571 610448743 1.980000e-78 303.0
15 TraesCS2B01G117900 chr7A 94.366 142 8 0 3173 3314 724232738 724232597 7.390000e-53 219.0
16 TraesCS2B01G117900 chr5D 93.627 204 11 2 2038 2241 406201284 406201083 1.980000e-78 303.0
17 TraesCS2B01G117900 chr5D 93.590 156 8 2 3173 3327 368995499 368995345 9.500000e-57 231.0
18 TraesCS2B01G117900 chr5D 93.243 148 9 1 3173 3320 321902054 321901908 2.660000e-52 217.0
19 TraesCS2B01G117900 chr5D 93.151 146 9 1 3169 3314 134475674 134475818 3.440000e-51 213.0
20 TraesCS2B01G117900 chr5A 95.699 186 6 1 2035 2218 25118713 25118898 9.230000e-77 298.0
21 TraesCS2B01G117900 chr1A 95.263 190 6 3 2043 2231 133163741 133163554 9.230000e-77 298.0
22 TraesCS2B01G117900 chr1A 96.685 181 3 3 2043 2221 508278240 508278061 9.230000e-77 298.0
23 TraesCS2B01G117900 chr1A 96.685 181 3 3 2043 2221 508305566 508305387 9.230000e-77 298.0
24 TraesCS2B01G117900 chr1A 94.301 193 11 0 2045 2237 337152991 337152799 3.320000e-76 296.0
25 TraesCS2B01G117900 chr1A 78.182 165 28 6 1053 1213 563819060 563819220 1.010000e-16 99.0
26 TraesCS2B01G117900 chr3B 95.238 189 6 3 2043 2229 586527465 586527278 3.320000e-76 296.0
27 TraesCS2B01G117900 chr3B 91.584 202 15 2 1049 1249 56055981 56056181 1.200000e-70 278.0
28 TraesCS2B01G117900 chr3B 89.130 184 9 5 3133 3316 62969926 62970098 7.390000e-53 219.0
29 TraesCS2B01G117900 chr6D 94.709 189 10 0 2043 2231 75403093 75402905 1.190000e-75 294.0
30 TraesCS2B01G117900 chr3D 90.594 202 17 2 1049 1249 33294996 33295196 2.600000e-67 267.0
31 TraesCS2B01G117900 chr3A 90.050 201 20 0 1049 1249 45776244 45776444 1.210000e-65 261.0
32 TraesCS2B01G117900 chr1D 93.151 146 10 0 3173 3318 409539789 409539934 9.560000e-52 215.0
33 TraesCS2B01G117900 chr1D 89.697 165 16 1 3169 3332 137225062 137225226 4.450000e-50 209.0
34 TraesCS2B01G117900 chr1D 84.530 181 17 4 3133 3313 115018764 115018595 7.550000e-38 169.0
35 TraesCS2B01G117900 chr1D 87.234 94 9 2 72 162 318568439 318568346 2.160000e-18 104.0
36 TraesCS2B01G117900 chr1D 77.576 165 29 6 1053 1213 470220201 470220361 4.680000e-15 93.5
37 TraesCS2B01G117900 chr1D 100.000 28 0 0 4225 4252 17613114 17613141 8.000000e-03 52.8
38 TraesCS2B01G117900 chr1B 79.141 163 30 4 1053 1213 652782346 652782506 4.640000e-20 110.0
39 TraesCS2B01G117900 chr7D 100.000 28 0 0 4225 4252 87982899 87982926 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G117900 chr2B 81754633 81759023 4390 False 8109.000000 8109 100.0000 1 4391 1 chr2B.!!$F1 4390
1 TraesCS2B01G117900 chr2D 52226371 52230383 4012 False 1737.666667 2566 91.4280 59 4378 3 chr2D.!!$F2 4319
2 TraesCS2B01G117900 chr2A 53781759 53785797 4038 False 1311.250000 2233 90.1695 59 4378 4 chr2A.!!$F1 4319

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
403 416 0.643310 CACGCGCGCTAACTCAATTA 59.357 50.0 32.58 0.00 0.00 1.40 F
705 719 0.682855 CACCCCCACAACACACAACT 60.683 55.0 0.00 0.00 0.00 3.16 F
914 953 0.973632 TGCCCGAAGCTTCTGTCTTA 59.026 50.0 23.50 3.25 44.23 2.10 F
2153 2257 0.394938 TGTGCTGACGTGGGTTGTAT 59.605 50.0 0.00 0.00 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2134 2238 0.394938 ATACAACCCACGTCAGCACA 59.605 50.000 0.00 0.0 0.00 4.57 R
2137 2241 0.719465 CGAATACAACCCACGTCAGC 59.281 55.000 0.00 0.0 0.00 4.26 R
2313 2446 1.468520 GACTTGCGCATGCCTCTTTTA 59.531 47.619 21.93 0.0 41.78 1.52 R
3539 3730 0.321671 ATCACCAGTTCCACTCCACG 59.678 55.000 0.00 0.0 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.780846 TTGATCGCCATAATAACCGTTATTAT 57.219 30.769 22.73 22.73 45.17 1.28
56 57 6.959671 TTGCTTTAAAAGGGCATTTTATCG 57.040 33.333 16.68 11.87 41.74 2.92
57 58 6.274157 TGCTTTAAAAGGGCATTTTATCGA 57.726 33.333 16.68 6.67 41.74 3.59
77 78 3.933332 CGAAGTGAGGTTGGGAGATTAAC 59.067 47.826 0.00 0.00 0.00 2.01
83 84 2.640826 AGGTTGGGAGATTAACGGACAA 59.359 45.455 0.00 0.00 0.00 3.18
128 129 3.924114 TGGAAGAAGTTGTTCCACTCA 57.076 42.857 26.24 7.77 46.96 3.41
131 132 6.126863 TGGAAGAAGTTGTTCCACTCATAT 57.873 37.500 26.24 0.00 46.96 1.78
135 136 5.655488 AGAAGTTGTTCCACTCATATCTCG 58.345 41.667 0.00 0.00 32.48 4.04
142 143 4.046938 TCCACTCATATCTCGTCTTTGC 57.953 45.455 0.00 0.00 0.00 3.68
157 158 5.073478 CGTCTTTGCTTAAAGCTTAACTCG 58.927 41.667 0.00 0.00 42.97 4.18
162 163 4.969816 TGCTTAAAGCTTAACTCGCATTC 58.030 39.130 0.00 0.00 42.97 2.67
163 164 4.695455 TGCTTAAAGCTTAACTCGCATTCT 59.305 37.500 0.00 0.00 42.97 2.40
168 169 4.399004 AGCTTAACTCGCATTCTGAGAT 57.601 40.909 0.00 0.00 36.93 2.75
170 171 3.181377 GCTTAACTCGCATTCTGAGATCG 59.819 47.826 0.00 0.00 36.93 3.69
280 293 4.944962 TGAAGCACAGTACATATGCAAC 57.055 40.909 15.65 1.49 41.97 4.17
291 304 1.000607 CATATGCAACATGGAGGCTGC 60.001 52.381 0.00 0.00 35.32 5.25
334 347 2.386661 TGCTCTAAGTTGGCTACAGC 57.613 50.000 1.24 2.23 41.14 4.40
344 357 4.087182 AGTTGGCTACAGCTACTTCACTA 58.913 43.478 1.24 0.00 36.31 2.74
346 359 3.698289 TGGCTACAGCTACTTCACTAGT 58.302 45.455 0.54 0.00 41.70 2.57
365 378 2.089980 GTGTAGGTAGCTCCTTCGTCA 58.910 52.381 9.58 3.69 45.67 4.35
403 416 0.643310 CACGCGCGCTAACTCAATTA 59.357 50.000 32.58 0.00 0.00 1.40
406 419 3.060807 CACGCGCGCTAACTCAATTATTA 60.061 43.478 32.58 0.00 0.00 0.98
411 424 6.140108 CGCGCGCTAACTCAATTATTATTTTT 59.860 34.615 30.48 0.00 0.00 1.94
413 426 8.949953 GCGCGCTAACTCAATTATTATTTTTAA 58.050 29.630 26.67 0.00 0.00 1.52
479 492 9.915629 AAATACATCTATCCATAACGAGAGAAC 57.084 33.333 0.00 0.00 34.01 3.01
486 499 2.223525 CCATAACGAGAGAACGGAGACC 60.224 54.545 0.00 0.00 37.61 3.85
499 512 1.348036 CGGAGACCAAAAAGGGAGAGT 59.652 52.381 0.00 0.00 43.89 3.24
500 513 2.784347 GGAGACCAAAAAGGGAGAGTG 58.216 52.381 0.00 0.00 43.89 3.51
501 514 2.372172 GGAGACCAAAAAGGGAGAGTGA 59.628 50.000 0.00 0.00 43.89 3.41
502 515 3.558109 GGAGACCAAAAAGGGAGAGTGAG 60.558 52.174 0.00 0.00 43.89 3.51
503 516 3.049344 AGACCAAAAAGGGAGAGTGAGT 58.951 45.455 0.00 0.00 43.89 3.41
504 517 3.459969 AGACCAAAAAGGGAGAGTGAGTT 59.540 43.478 0.00 0.00 43.89 3.01
505 518 3.815962 GACCAAAAAGGGAGAGTGAGTTC 59.184 47.826 0.00 0.00 43.89 3.01
506 519 2.808543 CCAAAAAGGGAGAGTGAGTTCG 59.191 50.000 0.00 0.00 0.00 3.95
507 520 3.467803 CAAAAAGGGAGAGTGAGTTCGT 58.532 45.455 0.00 0.00 0.00 3.85
508 521 2.821991 AAAGGGAGAGTGAGTTCGTG 57.178 50.000 0.00 0.00 0.00 4.35
543 556 2.931325 ACGCGTTTAACTCAGTTCAACA 59.069 40.909 5.58 0.00 31.54 3.33
584 598 3.587933 GACGGCCGCAAACCAACA 61.588 61.111 28.58 0.00 0.00 3.33
600 614 3.766591 ACCAACAGTGACACCAAATTCAA 59.233 39.130 0.84 0.00 0.00 2.69
616 630 3.485463 TTCAATCTGGTTTCGGTCAGT 57.515 42.857 0.00 0.00 33.13 3.41
617 631 4.610605 TTCAATCTGGTTTCGGTCAGTA 57.389 40.909 0.00 0.00 33.13 2.74
618 632 4.188247 TCAATCTGGTTTCGGTCAGTAG 57.812 45.455 0.00 0.00 33.13 2.57
619 633 3.830178 TCAATCTGGTTTCGGTCAGTAGA 59.170 43.478 0.00 0.00 33.13 2.59
620 634 4.282449 TCAATCTGGTTTCGGTCAGTAGAA 59.718 41.667 0.00 0.00 33.13 2.10
621 635 3.936372 TCTGGTTTCGGTCAGTAGAAG 57.064 47.619 0.00 0.00 33.13 2.85
622 636 2.561419 TCTGGTTTCGGTCAGTAGAAGG 59.439 50.000 0.00 0.00 33.13 3.46
623 637 2.299297 CTGGTTTCGGTCAGTAGAAGGT 59.701 50.000 0.00 0.00 0.00 3.50
624 638 2.701951 TGGTTTCGGTCAGTAGAAGGTT 59.298 45.455 0.00 0.00 0.00 3.50
625 639 3.135167 TGGTTTCGGTCAGTAGAAGGTTT 59.865 43.478 0.00 0.00 0.00 3.27
626 640 3.744942 GGTTTCGGTCAGTAGAAGGTTTC 59.255 47.826 0.00 0.00 0.00 2.78
627 641 3.293311 TTCGGTCAGTAGAAGGTTTCG 57.707 47.619 0.00 0.00 34.02 3.46
628 642 1.542915 TCGGTCAGTAGAAGGTTTCGG 59.457 52.381 0.00 0.00 34.02 4.30
629 643 1.271656 CGGTCAGTAGAAGGTTTCGGT 59.728 52.381 0.00 0.00 34.02 4.69
630 644 2.670509 CGGTCAGTAGAAGGTTTCGGTC 60.671 54.545 0.00 0.00 34.02 4.79
631 645 2.298163 GGTCAGTAGAAGGTTTCGGTCA 59.702 50.000 0.00 0.00 34.02 4.02
632 646 3.315418 GTCAGTAGAAGGTTTCGGTCAC 58.685 50.000 0.00 0.00 34.02 3.67
671 685 1.327690 ATAGCCCCTCGCGAGTCAAA 61.328 55.000 32.41 15.38 44.76 2.69
688 702 2.805671 TCAAACATCACCGTCATGTCAC 59.194 45.455 0.00 0.00 33.12 3.67
705 719 0.682855 CACCCCCACAACACACAACT 60.683 55.000 0.00 0.00 0.00 3.16
829 863 2.350895 CGGCTGAATCACCACCCA 59.649 61.111 0.00 0.00 0.00 4.51
830 864 1.746615 CGGCTGAATCACCACCCAG 60.747 63.158 0.00 0.00 0.00 4.45
890 929 4.699303 CGCGCGATCGACACTATATATAT 58.301 43.478 28.94 0.00 38.10 0.86
914 953 0.973632 TGCCCGAAGCTTCTGTCTTA 59.026 50.000 23.50 3.25 44.23 2.10
961 1004 1.134371 GCCTCATAGTCCAACACTCCC 60.134 57.143 0.00 0.00 36.43 4.30
982 1029 1.352622 ATTCCCGGCCATCCTGCTAA 61.353 55.000 2.24 0.00 0.00 3.09
1398 1448 2.277373 GCGTACAGCTCGTCCTCG 60.277 66.667 0.00 0.00 44.04 4.63
1407 1457 2.435586 TCGTCCTCGTCCTCGTCC 60.436 66.667 0.00 0.00 38.33 4.79
1455 1505 1.363530 GGATGGTGGGGGACATGGAT 61.364 60.000 0.00 0.00 0.00 3.41
1596 1655 1.227823 CTCGTGCCAACCAGGTGAA 60.228 57.895 0.00 0.00 40.61 3.18
1603 1662 4.280019 AACCAGGTGAACCCCGCC 62.280 66.667 0.00 0.00 45.81 6.13
1735 1794 4.853924 TCAACATTTTGGCTTCTTCCTC 57.146 40.909 0.00 0.00 33.06 3.71
1775 1861 9.638239 GATTCATCTTCTTCTTCTTCGCTATAT 57.362 33.333 0.00 0.00 0.00 0.86
1839 1926 8.158169 TCTTGTTTGGATCATAATATCAGTGC 57.842 34.615 0.00 0.00 0.00 4.40
1840 1927 6.882610 TGTTTGGATCATAATATCAGTGCC 57.117 37.500 0.00 0.00 0.00 5.01
1841 1928 6.604171 TGTTTGGATCATAATATCAGTGCCT 58.396 36.000 0.00 0.00 0.00 4.75
1842 1929 6.712095 TGTTTGGATCATAATATCAGTGCCTC 59.288 38.462 0.00 0.00 0.00 4.70
1843 1930 6.438186 TTGGATCATAATATCAGTGCCTCA 57.562 37.500 0.00 0.00 0.00 3.86
1844 1931 6.631763 TGGATCATAATATCAGTGCCTCAT 57.368 37.500 0.00 0.00 0.00 2.90
1845 1932 6.412214 TGGATCATAATATCAGTGCCTCATG 58.588 40.000 0.00 0.00 0.00 3.07
1846 1933 5.296283 GGATCATAATATCAGTGCCTCATGC 59.704 44.000 0.00 0.00 41.77 4.06
1924 2028 5.804639 TCTTGCATGTATGGACAAACTACT 58.195 37.500 0.00 0.00 39.59 2.57
1929 2033 7.262772 TGCATGTATGGACAAACTACTAGTAC 58.737 38.462 0.00 0.00 39.59 2.73
1951 2055 9.617975 AGTACTTTCGTGTATGTACTACTTTTC 57.382 33.333 0.00 0.00 42.29 2.29
1968 2072 5.045215 ACTTTTCGATCATCGCCGTAATTA 58.955 37.500 0.80 0.00 40.21 1.40
2019 2123 9.613957 GGCTTCATTTCTAGTTTTAGTTTTCTC 57.386 33.333 0.00 0.00 0.00 2.87
2055 2159 8.574196 ACAACACAATTCTATTACAGTTTTGC 57.426 30.769 0.00 0.00 0.00 3.68
2056 2160 8.413229 ACAACACAATTCTATTACAGTTTTGCT 58.587 29.630 0.00 0.00 0.00 3.91
2057 2161 9.891828 CAACACAATTCTATTACAGTTTTGCTA 57.108 29.630 0.00 0.00 0.00 3.49
2059 2163 9.502091 ACACAATTCTATTACAGTTTTGCTAGA 57.498 29.630 0.00 0.00 0.00 2.43
2064 2168 9.944376 ATTCTATTACAGTTTTGCTAGAACTCA 57.056 29.630 0.00 0.00 35.26 3.41
2065 2169 9.944376 TTCTATTACAGTTTTGCTAGAACTCAT 57.056 29.630 0.00 0.00 35.26 2.90
2066 2170 9.587772 TCTATTACAGTTTTGCTAGAACTCATC 57.412 33.333 0.00 0.00 35.26 2.92
2067 2171 9.593134 CTATTACAGTTTTGCTAGAACTCATCT 57.407 33.333 0.00 0.00 42.48 2.90
2096 2200 8.055279 TGAGATTTAATTTGGTCTCATTCACC 57.945 34.615 10.50 0.00 41.40 4.02
2097 2201 7.890127 TGAGATTTAATTTGGTCTCATTCACCT 59.110 33.333 10.50 0.00 41.40 4.00
2098 2202 8.655935 AGATTTAATTTGGTCTCATTCACCTT 57.344 30.769 0.00 0.00 34.66 3.50
2099 2203 9.093458 AGATTTAATTTGGTCTCATTCACCTTT 57.907 29.630 0.00 0.00 34.66 3.11
2100 2204 9.710900 GATTTAATTTGGTCTCATTCACCTTTT 57.289 29.630 0.00 0.00 34.66 2.27
2105 2209 7.391148 TTTGGTCTCATTCACCTTTTATAGC 57.609 36.000 0.00 0.00 34.66 2.97
2106 2210 5.437060 TGGTCTCATTCACCTTTTATAGCC 58.563 41.667 0.00 0.00 34.66 3.93
2107 2211 5.045213 TGGTCTCATTCACCTTTTATAGCCA 60.045 40.000 0.00 0.00 34.66 4.75
2108 2212 6.064717 GGTCTCATTCACCTTTTATAGCCAT 58.935 40.000 0.00 0.00 0.00 4.40
2109 2213 6.547510 GGTCTCATTCACCTTTTATAGCCATT 59.452 38.462 0.00 0.00 0.00 3.16
2110 2214 7.420800 GTCTCATTCACCTTTTATAGCCATTG 58.579 38.462 0.00 0.00 0.00 2.82
2111 2215 6.547141 TCTCATTCACCTTTTATAGCCATTGG 59.453 38.462 0.00 0.00 0.00 3.16
2112 2216 6.430864 TCATTCACCTTTTATAGCCATTGGA 58.569 36.000 6.95 0.00 0.00 3.53
2113 2217 7.068702 TCATTCACCTTTTATAGCCATTGGAT 58.931 34.615 6.95 1.78 0.00 3.41
2114 2218 6.713762 TTCACCTTTTATAGCCATTGGATG 57.286 37.500 6.95 0.00 0.00 3.51
2115 2219 5.765510 TCACCTTTTATAGCCATTGGATGT 58.234 37.500 6.95 0.10 0.00 3.06
2116 2220 5.593909 TCACCTTTTATAGCCATTGGATGTG 59.406 40.000 6.95 2.95 0.00 3.21
2117 2221 5.593909 CACCTTTTATAGCCATTGGATGTGA 59.406 40.000 6.95 0.00 0.00 3.58
2118 2222 6.266103 CACCTTTTATAGCCATTGGATGTGAT 59.734 38.462 6.95 0.00 0.00 3.06
2119 2223 6.266103 ACCTTTTATAGCCATTGGATGTGATG 59.734 38.462 6.95 0.00 0.00 3.07
2120 2224 5.710513 TTTATAGCCATTGGATGTGATGC 57.289 39.130 6.95 0.00 0.00 3.91
2121 2225 3.520691 ATAGCCATTGGATGTGATGCT 57.479 42.857 6.95 0.00 0.00 3.79
2122 2226 4.645863 ATAGCCATTGGATGTGATGCTA 57.354 40.909 6.95 0.00 0.00 3.49
2123 2227 3.520691 AGCCATTGGATGTGATGCTAT 57.479 42.857 6.95 0.00 0.00 2.97
2124 2228 4.645863 AGCCATTGGATGTGATGCTATA 57.354 40.909 6.95 0.00 0.00 1.31
2125 2229 4.989277 AGCCATTGGATGTGATGCTATAA 58.011 39.130 6.95 0.00 0.00 0.98
2126 2230 5.008331 AGCCATTGGATGTGATGCTATAAG 58.992 41.667 6.95 0.00 0.00 1.73
2127 2231 5.005740 GCCATTGGATGTGATGCTATAAGA 58.994 41.667 6.95 0.00 0.00 2.10
2128 2232 5.651139 GCCATTGGATGTGATGCTATAAGAT 59.349 40.000 6.95 0.00 0.00 2.40
2129 2233 6.404403 GCCATTGGATGTGATGCTATAAGATG 60.404 42.308 6.95 0.00 0.00 2.90
2130 2234 6.404403 CCATTGGATGTGATGCTATAAGATGC 60.404 42.308 0.00 0.00 0.00 3.91
2131 2235 4.248058 TGGATGTGATGCTATAAGATGCG 58.752 43.478 0.00 0.00 0.00 4.73
2132 2236 4.248859 GGATGTGATGCTATAAGATGCGT 58.751 43.478 0.00 0.00 0.00 5.24
2133 2237 4.092529 GGATGTGATGCTATAAGATGCGTG 59.907 45.833 0.00 0.00 0.00 5.34
2134 2238 4.058721 TGTGATGCTATAAGATGCGTGT 57.941 40.909 0.00 0.00 0.00 4.49
2135 2239 3.803778 TGTGATGCTATAAGATGCGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
2136 2240 3.804325 GTGATGCTATAAGATGCGTGTGT 59.196 43.478 0.00 0.00 0.00 3.72
2137 2241 3.803778 TGATGCTATAAGATGCGTGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
2138 2242 1.933181 TGCTATAAGATGCGTGTGTGC 59.067 47.619 0.00 0.00 0.00 4.57
2139 2243 2.205074 GCTATAAGATGCGTGTGTGCT 58.795 47.619 0.00 0.00 35.36 4.40
2140 2244 2.033407 GCTATAAGATGCGTGTGTGCTG 60.033 50.000 0.00 0.00 35.36 4.41
2141 2245 2.385013 ATAAGATGCGTGTGTGCTGA 57.615 45.000 0.00 0.00 35.36 4.26
2142 2246 1.428448 TAAGATGCGTGTGTGCTGAC 58.572 50.000 0.00 0.00 35.36 3.51
2143 2247 1.560004 AAGATGCGTGTGTGCTGACG 61.560 55.000 0.00 0.00 38.63 4.35
2144 2248 2.280119 ATGCGTGTGTGCTGACGT 60.280 55.556 0.00 0.00 37.89 4.34
2145 2249 2.484631 GATGCGTGTGTGCTGACGTG 62.485 60.000 0.00 0.00 37.89 4.49
2146 2250 4.000557 GCGTGTGTGCTGACGTGG 62.001 66.667 0.00 0.00 37.89 4.94
2147 2251 3.337889 CGTGTGTGCTGACGTGGG 61.338 66.667 0.00 0.00 0.00 4.61
2148 2252 2.203015 GTGTGTGCTGACGTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
2149 2253 1.817941 GTGTGTGCTGACGTGGGTT 60.818 57.895 0.00 0.00 0.00 4.11
2150 2254 1.817520 TGTGTGCTGACGTGGGTTG 60.818 57.895 0.00 0.00 0.00 3.77
2151 2255 1.817941 GTGTGCTGACGTGGGTTGT 60.818 57.895 0.00 0.00 0.00 3.32
2152 2256 0.531090 GTGTGCTGACGTGGGTTGTA 60.531 55.000 0.00 0.00 0.00 2.41
2153 2257 0.394938 TGTGCTGACGTGGGTTGTAT 59.605 50.000 0.00 0.00 0.00 2.29
2154 2258 1.202710 TGTGCTGACGTGGGTTGTATT 60.203 47.619 0.00 0.00 0.00 1.89
2155 2259 1.463444 GTGCTGACGTGGGTTGTATTC 59.537 52.381 0.00 0.00 0.00 1.75
2156 2260 0.719465 GCTGACGTGGGTTGTATTCG 59.281 55.000 0.00 0.00 0.00 3.34
2157 2261 1.938016 GCTGACGTGGGTTGTATTCGT 60.938 52.381 0.00 0.00 37.45 3.85
2158 2262 2.409975 CTGACGTGGGTTGTATTCGTT 58.590 47.619 0.00 0.00 34.93 3.85
2159 2263 2.406130 TGACGTGGGTTGTATTCGTTC 58.594 47.619 0.00 0.00 34.93 3.95
2160 2264 2.036217 TGACGTGGGTTGTATTCGTTCT 59.964 45.455 0.00 0.00 34.93 3.01
2161 2265 3.062042 GACGTGGGTTGTATTCGTTCTT 58.938 45.455 0.00 0.00 34.93 2.52
2162 2266 2.803956 ACGTGGGTTGTATTCGTTCTTG 59.196 45.455 0.00 0.00 0.00 3.02
2163 2267 2.803956 CGTGGGTTGTATTCGTTCTTGT 59.196 45.455 0.00 0.00 0.00 3.16
2164 2268 3.249080 CGTGGGTTGTATTCGTTCTTGTT 59.751 43.478 0.00 0.00 0.00 2.83
2165 2269 4.260866 CGTGGGTTGTATTCGTTCTTGTTT 60.261 41.667 0.00 0.00 0.00 2.83
2166 2270 5.584442 GTGGGTTGTATTCGTTCTTGTTTT 58.416 37.500 0.00 0.00 0.00 2.43
2167 2271 5.684184 GTGGGTTGTATTCGTTCTTGTTTTC 59.316 40.000 0.00 0.00 0.00 2.29
2168 2272 4.907582 GGGTTGTATTCGTTCTTGTTTTCG 59.092 41.667 0.00 0.00 0.00 3.46
2169 2273 5.277442 GGGTTGTATTCGTTCTTGTTTTCGA 60.277 40.000 0.00 0.00 0.00 3.71
2170 2274 5.844396 GGTTGTATTCGTTCTTGTTTTCGAG 59.156 40.000 0.00 0.00 33.98 4.04
2171 2275 5.585500 TGTATTCGTTCTTGTTTTCGAGG 57.415 39.130 0.00 0.00 33.98 4.63
2172 2276 5.051816 TGTATTCGTTCTTGTTTTCGAGGT 58.948 37.500 0.00 0.00 33.98 3.85
2173 2277 3.936902 TTCGTTCTTGTTTTCGAGGTG 57.063 42.857 0.00 0.00 33.98 4.00
2174 2278 3.167921 TCGTTCTTGTTTTCGAGGTGA 57.832 42.857 0.00 0.00 32.40 4.02
2175 2279 3.523547 TCGTTCTTGTTTTCGAGGTGAA 58.476 40.909 0.00 0.00 33.85 3.18
2176 2280 4.124238 TCGTTCTTGTTTTCGAGGTGAAT 58.876 39.130 0.00 0.00 36.22 2.57
2177 2281 4.025229 TCGTTCTTGTTTTCGAGGTGAATG 60.025 41.667 0.00 0.00 36.22 2.67
2178 2282 4.025229 CGTTCTTGTTTTCGAGGTGAATGA 60.025 41.667 0.00 0.00 36.22 2.57
2179 2283 5.444122 GTTCTTGTTTTCGAGGTGAATGAG 58.556 41.667 0.00 0.00 36.22 2.90
2180 2284 4.956085 TCTTGTTTTCGAGGTGAATGAGA 58.044 39.130 0.00 0.00 36.22 3.27
2181 2285 4.750098 TCTTGTTTTCGAGGTGAATGAGAC 59.250 41.667 0.00 0.00 36.22 3.36
2182 2286 3.399330 TGTTTTCGAGGTGAATGAGACC 58.601 45.455 0.00 0.00 36.22 3.85
2183 2287 3.181459 TGTTTTCGAGGTGAATGAGACCA 60.181 43.478 0.00 0.00 36.22 4.02
2184 2288 3.762407 TTTCGAGGTGAATGAGACCAA 57.238 42.857 0.00 0.00 36.22 3.67
2185 2289 3.762407 TTCGAGGTGAATGAGACCAAA 57.238 42.857 0.00 0.00 35.76 3.28
2186 2290 3.981071 TCGAGGTGAATGAGACCAAAT 57.019 42.857 0.00 0.00 35.76 2.32
2187 2291 4.286297 TCGAGGTGAATGAGACCAAATT 57.714 40.909 0.00 0.00 35.76 1.82
2188 2292 5.414789 TCGAGGTGAATGAGACCAAATTA 57.585 39.130 0.00 0.00 35.76 1.40
2189 2293 5.175859 TCGAGGTGAATGAGACCAAATTAC 58.824 41.667 0.00 0.00 35.76 1.89
2190 2294 4.032900 CGAGGTGAATGAGACCAAATTACG 59.967 45.833 0.00 0.00 35.76 3.18
2191 2295 4.906618 AGGTGAATGAGACCAAATTACGT 58.093 39.130 0.00 0.00 35.76 3.57
2192 2296 4.935808 AGGTGAATGAGACCAAATTACGTC 59.064 41.667 0.00 0.00 35.76 4.34
2193 2297 4.935808 GGTGAATGAGACCAAATTACGTCT 59.064 41.667 6.98 6.98 42.02 4.18
2202 2306 7.589958 AGACCAAATTACGTCTCATCTAGAT 57.410 36.000 0.00 0.00 34.15 1.98
2203 2307 7.429633 AGACCAAATTACGTCTCATCTAGATG 58.570 38.462 24.32 24.32 45.40 2.90
2204 2308 7.285629 AGACCAAATTACGTCTCATCTAGATGA 59.714 37.037 29.17 29.17 42.99 2.92
2218 2322 8.270137 TCATCTAGATGAGTTCTAGGTACTCT 57.730 38.462 27.93 10.35 44.99 3.24
2219 2323 8.372459 TCATCTAGATGAGTTCTAGGTACTCTC 58.628 40.741 27.93 15.64 44.99 3.20
2220 2324 8.154203 CATCTAGATGAGTTCTAGGTACTCTCA 58.846 40.741 25.78 13.08 44.99 3.27
2223 2327 7.817418 AGATGAGTTCTAGGTACTCTCATTC 57.183 40.000 19.80 13.65 43.38 2.67
2224 2328 7.582719 AGATGAGTTCTAGGTACTCTCATTCT 58.417 38.462 19.80 14.91 43.38 2.40
2225 2329 8.719596 AGATGAGTTCTAGGTACTCTCATTCTA 58.280 37.037 19.80 5.46 43.38 2.10
2226 2330 9.515226 GATGAGTTCTAGGTACTCTCATTCTAT 57.485 37.037 19.80 8.75 43.38 1.98
2227 2331 9.875708 ATGAGTTCTAGGTACTCTCATTCTATT 57.124 33.333 19.80 0.14 41.52 1.73
2280 2384 9.670180 GTCTCTTTGTTTTAATTGTTTGTTTCG 57.330 29.630 0.00 0.00 0.00 3.46
2293 2426 6.456447 TGTTTGTTTCGTAGTAGTACATGC 57.544 37.500 8.43 0.00 0.00 4.06
2380 2518 6.665680 AGCAACAAACAACCCCATTACATATA 59.334 34.615 0.00 0.00 0.00 0.86
2381 2519 6.754675 GCAACAAACAACCCCATTACATATAC 59.245 38.462 0.00 0.00 0.00 1.47
2384 2522 7.406916 ACAAACAACCCCATTACATATACTGA 58.593 34.615 0.00 0.00 0.00 3.41
2392 2530 8.502738 ACCCCATTACATATACTGATTGTTCTT 58.497 33.333 0.00 0.00 0.00 2.52
2481 2619 3.016031 TGTGCAAACATGTTGTCTCACT 58.984 40.909 12.82 0.00 30.54 3.41
2551 2695 0.522626 TCATTGCATGGACGCTTGTG 59.477 50.000 0.00 0.00 0.00 3.33
2553 2697 1.246056 ATTGCATGGACGCTTGTGCT 61.246 50.000 0.00 0.00 38.37 4.40
2636 2800 7.849515 GTGGCGCTTAATTAACTGTACTAATTC 59.150 37.037 7.64 0.00 32.54 2.17
2751 2915 7.549134 GCATATGTACTATGTTAAGCATGCCTA 59.451 37.037 15.66 2.10 39.61 3.93
2752 2916 9.605275 CATATGTACTATGTTAAGCATGCCTAT 57.395 33.333 15.66 3.55 38.47 2.57
2753 2917 9.823647 ATATGTACTATGTTAAGCATGCCTATC 57.176 33.333 15.66 5.73 38.47 2.08
2771 2935 5.393461 GCCTATCCTGAATTTTCCACAACAG 60.393 44.000 0.00 0.00 0.00 3.16
2799 2963 1.619654 TGCATGTTCAGAACAAGGGG 58.380 50.000 19.92 10.80 45.86 4.79
2833 2997 3.554129 CGAATATTGGAGGCGTACCATGA 60.554 47.826 0.00 0.00 39.06 3.07
2838 3002 0.535335 GGAGGCGTACCATGACAGAA 59.465 55.000 0.00 0.00 39.06 3.02
2854 3018 3.350833 ACAGAAAGCTGATGGGATGTTC 58.649 45.455 0.00 0.00 45.17 3.18
2867 3031 9.565090 CTGATGGGATGTTCATATTTCTTAGAA 57.435 33.333 0.00 0.00 0.00 2.10
3130 3318 3.487879 CGCTGAAAATGCATGCACATAGA 60.488 43.478 25.37 6.45 0.00 1.98
3131 3319 3.795101 GCTGAAAATGCATGCACATAGAC 59.205 43.478 25.37 12.82 0.00 2.59
3140 3328 6.973229 TGCATGCACATAGACATATGATAC 57.027 37.500 18.46 0.64 41.22 2.24
3141 3329 6.704310 TGCATGCACATAGACATATGATACT 58.296 36.000 18.46 8.18 41.22 2.12
3143 3331 6.257411 GCATGCACATAGACATATGATACTCC 59.743 42.308 14.21 0.00 41.22 3.85
3145 3333 6.019108 TGCACATAGACATATGATACTCCCT 58.981 40.000 10.38 0.00 41.22 4.20
3146 3334 6.153510 TGCACATAGACATATGATACTCCCTC 59.846 42.308 10.38 0.00 41.22 4.30
3148 3336 5.888724 ACATAGACATATGATACTCCCTCCG 59.111 44.000 10.38 0.00 41.22 4.63
3149 3337 4.390129 AGACATATGATACTCCCTCCGT 57.610 45.455 10.38 0.00 0.00 4.69
3150 3338 4.742012 AGACATATGATACTCCCTCCGTT 58.258 43.478 10.38 0.00 0.00 4.44
3151 3339 4.767928 AGACATATGATACTCCCTCCGTTC 59.232 45.833 10.38 0.00 0.00 3.95
3153 3341 2.777459 ATGATACTCCCTCCGTTCCT 57.223 50.000 0.00 0.00 0.00 3.36
3155 3343 3.675348 TGATACTCCCTCCGTTCCTAA 57.325 47.619 0.00 0.00 0.00 2.69
3158 3346 5.708544 TGATACTCCCTCCGTTCCTAAATA 58.291 41.667 0.00 0.00 0.00 1.40
3159 3347 5.537674 TGATACTCCCTCCGTTCCTAAATAC 59.462 44.000 0.00 0.00 0.00 1.89
3160 3348 3.716431 ACTCCCTCCGTTCCTAAATACA 58.284 45.455 0.00 0.00 0.00 2.29
3161 3349 3.705072 ACTCCCTCCGTTCCTAAATACAG 59.295 47.826 0.00 0.00 0.00 2.74
3162 3350 3.705072 CTCCCTCCGTTCCTAAATACAGT 59.295 47.826 0.00 0.00 0.00 3.55
3163 3351 4.870636 TCCCTCCGTTCCTAAATACAGTA 58.129 43.478 0.00 0.00 0.00 2.74
3164 3352 4.646492 TCCCTCCGTTCCTAAATACAGTAC 59.354 45.833 0.00 0.00 0.00 2.73
3165 3353 4.648307 CCCTCCGTTCCTAAATACAGTACT 59.352 45.833 0.00 0.00 0.00 2.73
3166 3354 5.221204 CCCTCCGTTCCTAAATACAGTACTC 60.221 48.000 0.00 0.00 0.00 2.59
3167 3355 5.221204 CCTCCGTTCCTAAATACAGTACTCC 60.221 48.000 0.00 0.00 0.00 3.85
3168 3356 5.263599 TCCGTTCCTAAATACAGTACTCCA 58.736 41.667 0.00 0.00 0.00 3.86
3169 3357 5.895534 TCCGTTCCTAAATACAGTACTCCAT 59.104 40.000 0.00 0.00 0.00 3.41
3170 3358 7.062322 TCCGTTCCTAAATACAGTACTCCATA 58.938 38.462 0.00 0.00 0.00 2.74
3171 3359 7.560991 TCCGTTCCTAAATACAGTACTCCATAA 59.439 37.037 0.00 0.00 0.00 1.90
3172 3360 7.866393 CCGTTCCTAAATACAGTACTCCATAAG 59.134 40.741 0.00 0.00 0.00 1.73
3173 3361 8.411683 CGTTCCTAAATACAGTACTCCATAAGT 58.588 37.037 0.00 0.00 42.33 2.24
3174 3362 9.747293 GTTCCTAAATACAGTACTCCATAAGTC 57.253 37.037 0.00 0.00 39.55 3.01
3175 3363 9.710818 TTCCTAAATACAGTACTCCATAAGTCT 57.289 33.333 0.00 0.00 39.55 3.24
3176 3364 9.710818 TCCTAAATACAGTACTCCATAAGTCTT 57.289 33.333 0.00 0.00 39.55 3.01
3184 3372 9.310449 ACAGTACTCCATAAGTCTTTCTAAAGA 57.690 33.333 1.00 1.00 42.41 2.52
3197 3385 9.396022 AGTCTTTCTAAAGATTTCAACAAGTGA 57.604 29.630 8.31 0.00 45.83 3.41
3198 3386 9.439537 GTCTTTCTAAAGATTTCAACAAGTGAC 57.560 33.333 8.31 0.00 45.83 3.67
3199 3387 9.396022 TCTTTCTAAAGATTTCAACAAGTGACT 57.604 29.630 1.00 0.00 39.95 3.41
3202 3390 9.607988 TTCTAAAGATTTCAACAAGTGACTACA 57.392 29.630 0.00 0.00 35.39 2.74
3203 3391 9.778741 TCTAAAGATTTCAACAAGTGACTACAT 57.221 29.630 0.00 0.00 35.39 2.29
3206 3394 7.582435 AGATTTCAACAAGTGACTACATACG 57.418 36.000 0.00 0.00 35.39 3.06
3207 3395 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
3208 3396 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
3209 3397 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
3210 3398 6.321848 TCAACAAGTGACTACATACGAAGA 57.678 37.500 0.00 0.00 0.00 2.87
3211 3399 6.741109 TCAACAAGTGACTACATACGAAGAA 58.259 36.000 0.00 0.00 0.00 2.52
3212 3400 7.204604 TCAACAAGTGACTACATACGAAGAAA 58.795 34.615 0.00 0.00 0.00 2.52
3213 3401 7.707464 TCAACAAGTGACTACATACGAAGAAAA 59.293 33.333 0.00 0.00 0.00 2.29
3214 3402 8.332464 CAACAAGTGACTACATACGAAGAAAAA 58.668 33.333 0.00 0.00 0.00 1.94
3215 3403 8.603242 ACAAGTGACTACATACGAAGAAAAAT 57.397 30.769 0.00 0.00 0.00 1.82
3216 3404 8.495949 ACAAGTGACTACATACGAAGAAAAATG 58.504 33.333 0.00 0.00 0.00 2.32
3217 3405 8.708742 CAAGTGACTACATACGAAGAAAAATGA 58.291 33.333 0.00 0.00 0.00 2.57
3218 3406 8.467402 AGTGACTACATACGAAGAAAAATGAG 57.533 34.615 0.00 0.00 0.00 2.90
3219 3407 8.088981 AGTGACTACATACGAAGAAAAATGAGT 58.911 33.333 0.00 0.00 0.00 3.41
3220 3408 8.162880 GTGACTACATACGAAGAAAAATGAGTG 58.837 37.037 0.00 0.00 0.00 3.51
3221 3409 8.085909 TGACTACATACGAAGAAAAATGAGTGA 58.914 33.333 0.00 0.00 0.00 3.41
3222 3410 8.827177 ACTACATACGAAGAAAAATGAGTGAA 57.173 30.769 0.00 0.00 0.00 3.18
3223 3411 9.436957 ACTACATACGAAGAAAAATGAGTGAAT 57.563 29.630 0.00 0.00 0.00 2.57
3224 3412 9.907576 CTACATACGAAGAAAAATGAGTGAATC 57.092 33.333 0.00 0.00 0.00 2.52
3225 3413 8.553459 ACATACGAAGAAAAATGAGTGAATCT 57.447 30.769 0.00 0.00 0.00 2.40
3226 3414 9.653287 ACATACGAAGAAAAATGAGTGAATCTA 57.347 29.630 0.00 0.00 0.00 1.98
3227 3415 9.907576 CATACGAAGAAAAATGAGTGAATCTAC 57.092 33.333 0.00 0.00 0.00 2.59
3228 3416 7.962964 ACGAAGAAAAATGAGTGAATCTACA 57.037 32.000 0.00 0.00 0.00 2.74
3229 3417 7.797819 ACGAAGAAAAATGAGTGAATCTACAC 58.202 34.615 0.00 0.00 40.60 2.90
3262 3450 9.865321 GTATGTTTATATACATCCGTATGTGGT 57.135 33.333 11.50 0.00 45.99 4.16
3265 3453 9.081204 TGTTTATATACATCCGTATGTGGTAGT 57.919 33.333 3.56 0.00 45.99 2.73
3266 3454 9.565213 GTTTATATACATCCGTATGTGGTAGTC 57.435 37.037 3.56 0.00 45.99 2.59
3267 3455 9.524496 TTTATATACATCCGTATGTGGTAGTCT 57.476 33.333 3.56 0.00 45.99 3.24
3270 3458 9.696572 ATATACATCCGTATGTGGTAGTCTATT 57.303 33.333 3.56 0.00 45.99 1.73
3271 3459 6.726490 ACATCCGTATGTGGTAGTCTATTT 57.274 37.500 0.00 0.00 44.79 1.40
3272 3460 7.828508 ACATCCGTATGTGGTAGTCTATTTA 57.171 36.000 0.00 0.00 44.79 1.40
3273 3461 8.241497 ACATCCGTATGTGGTAGTCTATTTAA 57.759 34.615 0.00 0.00 44.79 1.52
3274 3462 8.698210 ACATCCGTATGTGGTAGTCTATTTAAA 58.302 33.333 0.00 0.00 44.79 1.52
3275 3463 9.537192 CATCCGTATGTGGTAGTCTATTTAAAA 57.463 33.333 0.00 0.00 0.00 1.52
3307 3495 8.904099 AAAAGACATATATTTAGGAACGGAGG 57.096 34.615 0.00 0.00 0.00 4.30
3308 3496 6.607004 AGACATATATTTAGGAACGGAGGG 57.393 41.667 0.00 0.00 0.00 4.30
3309 3497 6.320518 AGACATATATTTAGGAACGGAGGGA 58.679 40.000 0.00 0.00 0.00 4.20
3310 3498 6.437793 AGACATATATTTAGGAACGGAGGGAG 59.562 42.308 0.00 0.00 0.00 4.30
3311 3499 6.082707 ACATATATTTAGGAACGGAGGGAGT 58.917 40.000 0.00 0.00 0.00 3.85
3312 3500 7.243824 ACATATATTTAGGAACGGAGGGAGTA 58.756 38.462 0.00 0.00 0.00 2.59
3313 3501 7.396623 ACATATATTTAGGAACGGAGGGAGTAG 59.603 40.741 0.00 0.00 0.00 2.57
3314 3502 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
3392 3582 2.936498 AGGTCGCGAGGTCAAATTAATG 59.064 45.455 10.24 0.00 0.00 1.90
3404 3594 1.406903 AATTAATGGAGCTGGCTGGC 58.593 50.000 0.00 0.00 0.00 4.85
3463 3654 2.434185 GGAGACGGACGCATGCAA 60.434 61.111 19.57 0.00 0.00 4.08
3599 3790 3.027170 GCAGTCCATCAACCGTGCG 62.027 63.158 0.00 0.00 0.00 5.34
3626 3819 1.515519 ATGCCTGTACGTACGTGCG 60.516 57.895 30.25 24.57 33.40 5.34
3691 3884 3.199727 ACATATAGTGCACCATGTGTCCA 59.800 43.478 19.05 0.00 35.75 4.02
3766 3974 2.704725 ACAACATTGCAACCGATGAC 57.295 45.000 0.00 0.00 36.51 3.06
3820 4028 2.125106 GCCGTCCGAGCCATTCTT 60.125 61.111 0.00 0.00 0.00 2.52
3821 4029 1.745489 GCCGTCCGAGCCATTCTTT 60.745 57.895 0.00 0.00 0.00 2.52
3862 4070 4.105486 TCTGTATTTGCTTCGTCGAGATG 58.895 43.478 0.00 0.00 0.00 2.90
3896 4104 6.627065 GCCAGATAATACTACAGAGGAGATGC 60.627 46.154 0.00 0.00 0.00 3.91
3930 4138 3.219981 CATGGCACGTACGTACAAAAAC 58.780 45.455 22.34 11.10 0.00 2.43
3941 4151 1.849829 GTACAAAAACGTTGCTGTGCC 59.150 47.619 20.24 10.47 0.00 5.01
3973 4183 2.566529 CTCGTCGTAGGTGCAGCA 59.433 61.111 19.63 0.00 0.00 4.41
4085 4301 1.355210 CACCGCGTGTCAAAAAGCT 59.645 52.632 4.92 0.00 0.00 3.74
4107 4323 2.030893 CGCACACATGTCATTTTCCACT 60.031 45.455 0.00 0.00 0.00 4.00
4108 4324 3.311106 GCACACATGTCATTTTCCACTG 58.689 45.455 0.00 0.00 0.00 3.66
4206 4436 3.386402 GCACTTGCTATACCTCTTCCTCT 59.614 47.826 0.00 0.00 38.21 3.69
4333 4563 2.127232 GTGGTGCCTGCCAAAGTGT 61.127 57.895 0.00 0.00 40.68 3.55
4363 4593 5.403766 CGTGCATTATCAGTGAGGAATCTAC 59.596 44.000 0.00 2.34 0.00 2.59
4378 4608 2.259014 TCTACCCCTTTCCCCACTAC 57.741 55.000 0.00 0.00 0.00 2.73
4379 4609 1.210538 CTACCCCTTTCCCCACTACC 58.789 60.000 0.00 0.00 0.00 3.18
4380 4610 0.497301 TACCCCTTTCCCCACTACCA 59.503 55.000 0.00 0.00 0.00 3.25
4381 4611 0.178813 ACCCCTTTCCCCACTACCAT 60.179 55.000 0.00 0.00 0.00 3.55
4382 4612 1.007607 CCCCTTTCCCCACTACCATT 58.992 55.000 0.00 0.00 0.00 3.16
4383 4613 1.361197 CCCCTTTCCCCACTACCATTT 59.639 52.381 0.00 0.00 0.00 2.32
4384 4614 2.456577 CCCTTTCCCCACTACCATTTG 58.543 52.381 0.00 0.00 0.00 2.32
4385 4615 2.225267 CCCTTTCCCCACTACCATTTGT 60.225 50.000 0.00 0.00 0.00 2.83
4386 4616 2.825532 CCTTTCCCCACTACCATTTGTG 59.174 50.000 0.00 0.00 0.00 3.33
4387 4617 3.496331 CTTTCCCCACTACCATTTGTGT 58.504 45.455 0.00 0.00 32.76 3.72
4388 4618 2.871096 TCCCCACTACCATTTGTGTC 57.129 50.000 0.00 0.00 32.76 3.67
4389 4619 2.058705 TCCCCACTACCATTTGTGTCA 58.941 47.619 0.00 0.00 32.76 3.58
4390 4620 2.039746 TCCCCACTACCATTTGTGTCAG 59.960 50.000 0.00 0.00 32.76 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.780846 ATAATAACGGTTATTATGGCGATCAA 57.219 30.769 30.91 13.59 43.57 2.57
30 31 8.286097 CGATAAAATGCCCTTTTAAAGCAAAAA 58.714 29.630 4.90 0.00 41.42 1.94
31 32 7.657761 TCGATAAAATGCCCTTTTAAAGCAAAA 59.342 29.630 4.90 0.00 41.42 2.44
32 33 7.155328 TCGATAAAATGCCCTTTTAAAGCAAA 58.845 30.769 4.90 0.00 41.42 3.68
33 34 6.692486 TCGATAAAATGCCCTTTTAAAGCAA 58.308 32.000 4.90 0.00 41.42 3.91
34 35 6.274157 TCGATAAAATGCCCTTTTAAAGCA 57.726 33.333 3.41 3.41 41.42 3.91
35 36 6.811665 ACTTCGATAAAATGCCCTTTTAAAGC 59.188 34.615 0.00 0.00 41.42 3.51
36 37 8.026607 TCACTTCGATAAAATGCCCTTTTAAAG 58.973 33.333 0.00 0.00 41.42 1.85
37 38 7.887381 TCACTTCGATAAAATGCCCTTTTAAA 58.113 30.769 5.67 0.00 41.42 1.52
38 39 7.362574 CCTCACTTCGATAAAATGCCCTTTTAA 60.363 37.037 5.67 0.00 41.42 1.52
39 40 6.094881 CCTCACTTCGATAAAATGCCCTTTTA 59.905 38.462 4.39 4.39 42.09 1.52
40 41 5.105756 CCTCACTTCGATAAAATGCCCTTTT 60.106 40.000 0.00 0.53 40.21 2.27
41 42 4.399303 CCTCACTTCGATAAAATGCCCTTT 59.601 41.667 0.00 0.00 0.00 3.11
42 43 3.947834 CCTCACTTCGATAAAATGCCCTT 59.052 43.478 0.00 0.00 0.00 3.95
43 44 3.054361 ACCTCACTTCGATAAAATGCCCT 60.054 43.478 0.00 0.00 0.00 5.19
44 45 3.279434 ACCTCACTTCGATAAAATGCCC 58.721 45.455 0.00 0.00 0.00 5.36
45 46 4.438744 CCAACCTCACTTCGATAAAATGCC 60.439 45.833 0.00 0.00 0.00 4.40
46 47 4.438744 CCCAACCTCACTTCGATAAAATGC 60.439 45.833 0.00 0.00 0.00 3.56
47 48 4.941263 TCCCAACCTCACTTCGATAAAATG 59.059 41.667 0.00 0.00 0.00 2.32
48 49 5.045869 TCTCCCAACCTCACTTCGATAAAAT 60.046 40.000 0.00 0.00 0.00 1.82
49 50 4.285003 TCTCCCAACCTCACTTCGATAAAA 59.715 41.667 0.00 0.00 0.00 1.52
50 51 3.835978 TCTCCCAACCTCACTTCGATAAA 59.164 43.478 0.00 0.00 0.00 1.40
51 52 3.437213 TCTCCCAACCTCACTTCGATAA 58.563 45.455 0.00 0.00 0.00 1.75
52 53 3.095912 TCTCCCAACCTCACTTCGATA 57.904 47.619 0.00 0.00 0.00 2.92
53 54 1.938585 TCTCCCAACCTCACTTCGAT 58.061 50.000 0.00 0.00 0.00 3.59
54 55 1.938585 ATCTCCCAACCTCACTTCGA 58.061 50.000 0.00 0.00 0.00 3.71
55 56 2.770164 AATCTCCCAACCTCACTTCG 57.230 50.000 0.00 0.00 0.00 3.79
56 57 3.933332 CGTTAATCTCCCAACCTCACTTC 59.067 47.826 0.00 0.00 0.00 3.01
57 58 3.307480 CCGTTAATCTCCCAACCTCACTT 60.307 47.826 0.00 0.00 0.00 3.16
77 78 0.674895 CCTCCAGCTCCTTTTGTCCG 60.675 60.000 0.00 0.00 0.00 4.79
83 84 1.075659 GTTGGCCTCCAGCTCCTTT 59.924 57.895 3.32 0.00 43.05 3.11
128 129 8.604890 GTTAAGCTTTAAGCAAAGACGAGATAT 58.395 33.333 19.63 0.00 45.56 1.63
131 132 5.989777 AGTTAAGCTTTAAGCAAAGACGAGA 59.010 36.000 19.63 0.00 45.56 4.04
135 136 4.846677 GCGAGTTAAGCTTTAAGCAAAGAC 59.153 41.667 19.63 11.29 45.56 3.01
142 143 6.311445 TCTCAGAATGCGAGTTAAGCTTTAAG 59.689 38.462 3.20 0.00 34.76 1.85
280 293 0.601558 GCATATTGGCAGCCTCCATG 59.398 55.000 14.15 13.29 35.77 3.66
334 347 5.528320 GGAGCTACCTACACTAGTGAAGTAG 59.472 48.000 29.30 28.53 34.19 2.57
365 378 5.107607 CGCGTGTAACATTAGTTTGTTCTCT 60.108 40.000 0.00 0.00 40.25 3.10
451 464 9.521841 TCTCTCGTTATGGATAGATGTATTTCT 57.478 33.333 0.00 0.00 0.00 2.52
472 485 3.067833 CCTTTTTGGTCTCCGTTCTCTC 58.932 50.000 0.00 0.00 0.00 3.20
479 492 1.348036 ACTCTCCCTTTTTGGTCTCCG 59.652 52.381 0.00 0.00 0.00 4.63
486 499 3.248602 CACGAACTCACTCTCCCTTTTTG 59.751 47.826 0.00 0.00 0.00 2.44
499 512 1.205657 GCGTTGAACTCACGAACTCA 58.794 50.000 0.00 0.00 0.00 3.41
500 513 1.071436 GTGCGTTGAACTCACGAACTC 60.071 52.381 2.45 0.00 33.03 3.01
501 514 0.928229 GTGCGTTGAACTCACGAACT 59.072 50.000 2.45 0.00 33.03 3.01
502 515 0.042448 GGTGCGTTGAACTCACGAAC 60.042 55.000 11.72 0.00 34.84 3.95
503 516 0.460459 TGGTGCGTTGAACTCACGAA 60.460 50.000 11.72 1.03 34.84 3.85
504 517 1.142097 TGGTGCGTTGAACTCACGA 59.858 52.632 11.72 5.75 34.84 4.35
505 518 1.275657 GTGGTGCGTTGAACTCACG 59.724 57.895 11.72 0.00 34.84 4.35
506 519 1.275657 CGTGGTGCGTTGAACTCAC 59.724 57.895 9.78 9.78 33.37 3.51
507 520 2.530497 GCGTGGTGCGTTGAACTCA 61.530 57.895 0.00 0.00 43.66 3.41
508 521 2.248431 GCGTGGTGCGTTGAACTC 59.752 61.111 0.00 0.00 43.66 3.01
527 540 9.567848 GAAAATTGAGTGTTGAACTGAGTTAAA 57.432 29.630 0.00 0.00 40.07 1.52
543 556 6.599244 TCGGATATGCAAAGAGAAAATTGAGT 59.401 34.615 0.00 0.00 0.00 3.41
584 598 4.473444 ACCAGATTGAATTTGGTGTCACT 58.527 39.130 18.36 0.00 43.32 3.41
600 614 3.195825 CCTTCTACTGACCGAAACCAGAT 59.804 47.826 0.00 0.00 34.65 2.90
616 630 5.537674 ACTTTCTAGTGACCGAAACCTTCTA 59.462 40.000 0.00 0.00 31.99 2.10
617 631 4.344390 ACTTTCTAGTGACCGAAACCTTCT 59.656 41.667 0.00 0.00 31.99 2.85
618 632 4.629092 ACTTTCTAGTGACCGAAACCTTC 58.371 43.478 0.00 0.00 31.99 3.46
619 633 4.684484 ACTTTCTAGTGACCGAAACCTT 57.316 40.909 0.00 0.00 31.99 3.50
631 645 2.441750 TGGAACCTTGCCACTTTCTAGT 59.558 45.455 0.00 0.00 34.00 2.57
632 646 3.140325 TGGAACCTTGCCACTTTCTAG 57.860 47.619 0.00 0.00 0.00 2.43
671 685 0.036388 GGGTGACATGACGGTGATGT 60.036 55.000 13.08 13.08 36.73 3.06
688 702 0.744281 GAAGTTGTGTGTTGTGGGGG 59.256 55.000 0.00 0.00 0.00 5.40
705 719 1.448497 GTGTCCCGGTGAAGGTGAA 59.552 57.895 0.00 0.00 0.00 3.18
725 739 2.444700 CTTGGCGGTACCGTTCCAGT 62.445 60.000 33.34 0.00 43.94 4.00
830 864 2.170817 GAGTGAGAGGGGTAACATTCCC 59.829 54.545 0.00 0.00 43.90 3.97
890 929 2.125673 GAAGCTTCGGGCACGCTA 60.126 61.111 11.40 0.00 44.79 4.26
914 953 1.963515 GAGGGAATGTGTTGCTTGGTT 59.036 47.619 0.00 0.00 0.00 3.67
961 1004 2.492773 GCAGGATGGCCGGGAATTG 61.493 63.158 2.18 0.00 39.96 2.32
1749 1808 7.945033 ATAGCGAAGAAGAAGAAGATGAATC 57.055 36.000 0.00 0.00 0.00 2.52
1799 1885 6.609616 TCCAAACAAGAGGTGAAAAGGTAAAT 59.390 34.615 0.00 0.00 0.00 1.40
1845 1932 7.880217 GAAAATTTTCAATTACCGCAGATGTGC 60.880 37.037 23.06 4.40 40.43 4.57
1846 1933 6.949578 AAATTTTCAATTACCGCAGATGTG 57.050 33.333 0.00 0.00 0.00 3.21
1929 2033 7.786305 TCGAAAAGTAGTACATACACGAAAG 57.214 36.000 2.52 0.00 36.79 2.62
1951 2055 4.903638 AACATAATTACGGCGATGATCG 57.096 40.909 16.62 11.02 43.89 3.69
2072 2176 8.286191 AGGTGAATGAGACCAAATTAAATCTC 57.714 34.615 0.00 6.03 38.46 2.75
2073 2177 8.655935 AAGGTGAATGAGACCAAATTAAATCT 57.344 30.769 0.00 0.00 35.76 2.40
2074 2178 9.710900 AAAAGGTGAATGAGACCAAATTAAATC 57.289 29.630 0.00 0.00 35.76 2.17
2079 2183 8.470002 GCTATAAAAGGTGAATGAGACCAAATT 58.530 33.333 0.00 0.00 35.76 1.82
2080 2184 7.068716 GGCTATAAAAGGTGAATGAGACCAAAT 59.931 37.037 0.00 0.00 35.76 2.32
2081 2185 6.377146 GGCTATAAAAGGTGAATGAGACCAAA 59.623 38.462 0.00 0.00 35.76 3.28
2082 2186 5.885912 GGCTATAAAAGGTGAATGAGACCAA 59.114 40.000 0.00 0.00 35.76 3.67
2083 2187 5.045213 TGGCTATAAAAGGTGAATGAGACCA 60.045 40.000 0.00 0.00 35.76 4.02
2084 2188 5.437060 TGGCTATAAAAGGTGAATGAGACC 58.563 41.667 0.00 0.00 0.00 3.85
2085 2189 7.420800 CAATGGCTATAAAAGGTGAATGAGAC 58.579 38.462 0.00 0.00 0.00 3.36
2086 2190 6.547141 CCAATGGCTATAAAAGGTGAATGAGA 59.453 38.462 0.00 0.00 0.00 3.27
2087 2191 6.547141 TCCAATGGCTATAAAAGGTGAATGAG 59.453 38.462 0.00 0.00 0.00 2.90
2088 2192 6.430864 TCCAATGGCTATAAAAGGTGAATGA 58.569 36.000 0.00 0.00 0.00 2.57
2089 2193 6.713762 TCCAATGGCTATAAAAGGTGAATG 57.286 37.500 0.00 0.00 0.00 2.67
2090 2194 6.840705 ACATCCAATGGCTATAAAAGGTGAAT 59.159 34.615 0.00 0.00 33.60 2.57
2091 2195 6.096705 CACATCCAATGGCTATAAAAGGTGAA 59.903 38.462 0.00 0.00 33.60 3.18
2092 2196 5.593909 CACATCCAATGGCTATAAAAGGTGA 59.406 40.000 0.00 0.00 33.60 4.02
2093 2197 5.593909 TCACATCCAATGGCTATAAAAGGTG 59.406 40.000 0.00 0.00 33.60 4.00
2094 2198 5.765510 TCACATCCAATGGCTATAAAAGGT 58.234 37.500 0.00 0.00 33.60 3.50
2095 2199 6.684686 CATCACATCCAATGGCTATAAAAGG 58.315 40.000 0.00 0.00 33.60 3.11
2096 2200 6.015688 AGCATCACATCCAATGGCTATAAAAG 60.016 38.462 0.00 0.00 33.60 2.27
2097 2201 5.834742 AGCATCACATCCAATGGCTATAAAA 59.165 36.000 0.00 0.00 33.60 1.52
2098 2202 5.387788 AGCATCACATCCAATGGCTATAAA 58.612 37.500 0.00 0.00 33.60 1.40
2099 2203 4.989277 AGCATCACATCCAATGGCTATAA 58.011 39.130 0.00 0.00 33.60 0.98
2100 2204 4.645863 AGCATCACATCCAATGGCTATA 57.354 40.909 0.00 0.00 33.60 1.31
2101 2205 3.520691 AGCATCACATCCAATGGCTAT 57.479 42.857 0.00 0.00 33.60 2.97
2102 2206 4.645863 ATAGCATCACATCCAATGGCTA 57.354 40.909 0.00 0.00 33.60 3.93
2103 2207 3.520691 ATAGCATCACATCCAATGGCT 57.479 42.857 0.00 0.00 33.60 4.75
2104 2208 5.005740 TCTTATAGCATCACATCCAATGGC 58.994 41.667 0.00 0.00 33.60 4.40
2105 2209 6.404403 GCATCTTATAGCATCACATCCAATGG 60.404 42.308 0.00 0.00 33.60 3.16
2106 2210 6.552629 GCATCTTATAGCATCACATCCAATG 58.447 40.000 0.00 0.00 0.00 2.82
2107 2211 5.353400 CGCATCTTATAGCATCACATCCAAT 59.647 40.000 0.00 0.00 0.00 3.16
2108 2212 4.692155 CGCATCTTATAGCATCACATCCAA 59.308 41.667 0.00 0.00 0.00 3.53
2109 2213 4.248058 CGCATCTTATAGCATCACATCCA 58.752 43.478 0.00 0.00 0.00 3.41
2110 2214 4.092529 CACGCATCTTATAGCATCACATCC 59.907 45.833 0.00 0.00 0.00 3.51
2111 2215 4.687948 ACACGCATCTTATAGCATCACATC 59.312 41.667 0.00 0.00 0.00 3.06
2112 2216 4.450080 CACACGCATCTTATAGCATCACAT 59.550 41.667 0.00 0.00 0.00 3.21
2113 2217 3.803778 CACACGCATCTTATAGCATCACA 59.196 43.478 0.00 0.00 0.00 3.58
2114 2218 3.804325 ACACACGCATCTTATAGCATCAC 59.196 43.478 0.00 0.00 0.00 3.06
2115 2219 3.803778 CACACACGCATCTTATAGCATCA 59.196 43.478 0.00 0.00 0.00 3.07
2116 2220 3.363378 GCACACACGCATCTTATAGCATC 60.363 47.826 0.00 0.00 0.00 3.91
2117 2221 2.545526 GCACACACGCATCTTATAGCAT 59.454 45.455 0.00 0.00 0.00 3.79
2118 2222 1.933181 GCACACACGCATCTTATAGCA 59.067 47.619 0.00 0.00 0.00 3.49
2119 2223 2.033407 CAGCACACACGCATCTTATAGC 60.033 50.000 0.00 0.00 0.00 2.97
2120 2224 3.243877 GTCAGCACACACGCATCTTATAG 59.756 47.826 0.00 0.00 0.00 1.31
2121 2225 3.186909 GTCAGCACACACGCATCTTATA 58.813 45.455 0.00 0.00 0.00 0.98
2122 2226 2.002586 GTCAGCACACACGCATCTTAT 58.997 47.619 0.00 0.00 0.00 1.73
2123 2227 1.428448 GTCAGCACACACGCATCTTA 58.572 50.000 0.00 0.00 0.00 2.10
2124 2228 1.560004 CGTCAGCACACACGCATCTT 61.560 55.000 0.00 0.00 0.00 2.40
2125 2229 2.023771 CGTCAGCACACACGCATCT 61.024 57.895 0.00 0.00 0.00 2.90
2126 2230 2.310233 ACGTCAGCACACACGCATC 61.310 57.895 0.00 0.00 39.73 3.91
2127 2231 2.280119 ACGTCAGCACACACGCAT 60.280 55.556 0.00 0.00 39.73 4.73
2128 2232 3.261216 CACGTCAGCACACACGCA 61.261 61.111 0.00 0.00 39.73 5.24
2129 2233 4.000557 CCACGTCAGCACACACGC 62.001 66.667 0.00 0.00 39.73 5.34
2130 2234 3.337889 CCCACGTCAGCACACACG 61.338 66.667 0.00 0.00 41.90 4.49
2131 2235 1.817941 AACCCACGTCAGCACACAC 60.818 57.895 0.00 0.00 0.00 3.82
2132 2236 1.817520 CAACCCACGTCAGCACACA 60.818 57.895 0.00 0.00 0.00 3.72
2133 2237 0.531090 TACAACCCACGTCAGCACAC 60.531 55.000 0.00 0.00 0.00 3.82
2134 2238 0.394938 ATACAACCCACGTCAGCACA 59.605 50.000 0.00 0.00 0.00 4.57
2135 2239 1.463444 GAATACAACCCACGTCAGCAC 59.537 52.381 0.00 0.00 0.00 4.40
2136 2240 1.803334 GAATACAACCCACGTCAGCA 58.197 50.000 0.00 0.00 0.00 4.41
2137 2241 0.719465 CGAATACAACCCACGTCAGC 59.281 55.000 0.00 0.00 0.00 4.26
2138 2242 2.074547 ACGAATACAACCCACGTCAG 57.925 50.000 0.00 0.00 31.69 3.51
2139 2243 2.036217 AGAACGAATACAACCCACGTCA 59.964 45.455 0.00 0.00 36.20 4.35
2140 2244 2.680577 AGAACGAATACAACCCACGTC 58.319 47.619 0.00 0.00 36.20 4.34
2141 2245 2.803956 CAAGAACGAATACAACCCACGT 59.196 45.455 0.00 0.00 38.81 4.49
2142 2246 2.803956 ACAAGAACGAATACAACCCACG 59.196 45.455 0.00 0.00 0.00 4.94
2143 2247 4.823790 AACAAGAACGAATACAACCCAC 57.176 40.909 0.00 0.00 0.00 4.61
2144 2248 5.504337 CGAAAACAAGAACGAATACAACCCA 60.504 40.000 0.00 0.00 0.00 4.51
2145 2249 4.907582 CGAAAACAAGAACGAATACAACCC 59.092 41.667 0.00 0.00 0.00 4.11
2146 2250 5.740406 TCGAAAACAAGAACGAATACAACC 58.260 37.500 0.00 0.00 0.00 3.77
2147 2251 5.844396 CCTCGAAAACAAGAACGAATACAAC 59.156 40.000 0.00 0.00 34.50 3.32
2148 2252 5.524646 ACCTCGAAAACAAGAACGAATACAA 59.475 36.000 0.00 0.00 34.50 2.41
2149 2253 5.050634 CACCTCGAAAACAAGAACGAATACA 60.051 40.000 0.00 0.00 34.50 2.29
2150 2254 5.176223 TCACCTCGAAAACAAGAACGAATAC 59.824 40.000 0.00 0.00 34.50 1.89
2151 2255 5.291178 TCACCTCGAAAACAAGAACGAATA 58.709 37.500 0.00 0.00 34.50 1.75
2152 2256 4.124238 TCACCTCGAAAACAAGAACGAAT 58.876 39.130 0.00 0.00 34.50 3.34
2153 2257 3.523547 TCACCTCGAAAACAAGAACGAA 58.476 40.909 0.00 0.00 34.50 3.85
2154 2258 3.167921 TCACCTCGAAAACAAGAACGA 57.832 42.857 0.00 0.00 0.00 3.85
2155 2259 3.936902 TTCACCTCGAAAACAAGAACG 57.063 42.857 0.00 0.00 0.00 3.95
2156 2260 5.236478 TCTCATTCACCTCGAAAACAAGAAC 59.764 40.000 0.00 0.00 37.12 3.01
2157 2261 5.236478 GTCTCATTCACCTCGAAAACAAGAA 59.764 40.000 0.00 0.00 37.12 2.52
2158 2262 4.750098 GTCTCATTCACCTCGAAAACAAGA 59.250 41.667 0.00 0.00 37.12 3.02
2159 2263 4.083802 GGTCTCATTCACCTCGAAAACAAG 60.084 45.833 0.00 0.00 37.12 3.16
2160 2264 3.813166 GGTCTCATTCACCTCGAAAACAA 59.187 43.478 0.00 0.00 37.12 2.83
2161 2265 3.181459 TGGTCTCATTCACCTCGAAAACA 60.181 43.478 0.00 0.00 37.12 2.83
2162 2266 3.399330 TGGTCTCATTCACCTCGAAAAC 58.601 45.455 0.00 0.00 37.12 2.43
2163 2267 3.762407 TGGTCTCATTCACCTCGAAAA 57.238 42.857 0.00 0.00 37.12 2.29
2164 2268 3.762407 TTGGTCTCATTCACCTCGAAA 57.238 42.857 0.00 0.00 37.12 3.46
2165 2269 3.762407 TTTGGTCTCATTCACCTCGAA 57.238 42.857 0.00 0.00 38.22 3.71
2166 2270 3.981071 ATTTGGTCTCATTCACCTCGA 57.019 42.857 0.00 0.00 34.66 4.04
2167 2271 4.032900 CGTAATTTGGTCTCATTCACCTCG 59.967 45.833 0.00 0.00 34.66 4.63
2168 2272 4.935808 ACGTAATTTGGTCTCATTCACCTC 59.064 41.667 0.00 0.00 34.66 3.85
2169 2273 4.906618 ACGTAATTTGGTCTCATTCACCT 58.093 39.130 0.00 0.00 34.66 4.00
2170 2274 4.935808 AGACGTAATTTGGTCTCATTCACC 59.064 41.667 5.52 0.00 39.18 4.02
2178 2282 7.285629 TCATCTAGATGAGACGTAATTTGGTCT 59.714 37.037 27.93 9.96 45.71 3.85
2179 2283 7.426410 TCATCTAGATGAGACGTAATTTGGTC 58.574 38.462 27.93 1.46 42.42 4.02
2180 2284 7.348080 TCATCTAGATGAGACGTAATTTGGT 57.652 36.000 27.93 0.00 42.42 3.67
2198 2302 8.719596 AGAATGAGAGTACCTAGAACTCATCTA 58.280 37.037 20.64 9.13 44.15 1.98
2199 2303 7.582719 AGAATGAGAGTACCTAGAACTCATCT 58.417 38.462 20.64 15.86 44.15 2.90
2200 2304 7.817418 AGAATGAGAGTACCTAGAACTCATC 57.183 40.000 20.64 16.09 44.15 2.92
2201 2305 9.875708 AATAGAATGAGAGTACCTAGAACTCAT 57.124 33.333 20.64 14.91 45.96 2.90
2313 2446 1.468520 GACTTGCGCATGCCTCTTTTA 59.531 47.619 21.93 0.00 41.78 1.52
2380 2518 8.408043 TGATATTTTGGACAAGAACAATCAGT 57.592 30.769 0.00 0.00 0.00 3.41
2636 2800 5.877012 ACTTAGAATGAGTACAACATGGCTG 59.123 40.000 0.00 0.00 0.00 4.85
2751 2915 5.139727 TGTCTGTTGTGGAAAATTCAGGAT 58.860 37.500 0.00 0.00 0.00 3.24
2752 2916 4.531854 TGTCTGTTGTGGAAAATTCAGGA 58.468 39.130 0.00 0.00 0.00 3.86
2753 2917 4.794003 GCTGTCTGTTGTGGAAAATTCAGG 60.794 45.833 0.00 0.00 0.00 3.86
2771 2935 2.353323 TCTGAACATGCATGAGCTGTC 58.647 47.619 32.75 19.20 42.74 3.51
2799 2963 3.493129 TCCAATATTCGCGCTAATGTGTC 59.507 43.478 16.68 0.00 0.00 3.67
2833 2997 3.245016 TGAACATCCCATCAGCTTTCTGT 60.245 43.478 0.00 0.00 41.10 3.41
2838 3002 6.371278 AGAAATATGAACATCCCATCAGCTT 58.629 36.000 0.00 0.00 0.00 3.74
3130 3318 3.833070 GGAACGGAGGGAGTATCATATGT 59.167 47.826 1.90 0.00 36.25 2.29
3131 3319 4.090090 AGGAACGGAGGGAGTATCATATG 58.910 47.826 0.00 0.00 36.25 1.78
3140 3328 3.705072 ACTGTATTTAGGAACGGAGGGAG 59.295 47.826 0.00 0.00 0.00 4.30
3141 3329 3.716431 ACTGTATTTAGGAACGGAGGGA 58.284 45.455 0.00 0.00 0.00 4.20
3143 3331 5.221204 GGAGTACTGTATTTAGGAACGGAGG 60.221 48.000 0.00 0.00 0.00 4.30
3145 3333 5.263599 TGGAGTACTGTATTTAGGAACGGA 58.736 41.667 0.00 0.00 0.00 4.69
3146 3334 5.587388 TGGAGTACTGTATTTAGGAACGG 57.413 43.478 0.00 0.00 0.00 4.44
3148 3336 9.747293 GACTTATGGAGTACTGTATTTAGGAAC 57.253 37.037 0.00 0.00 39.19 3.62
3149 3337 9.710818 AGACTTATGGAGTACTGTATTTAGGAA 57.289 33.333 0.00 0.00 39.19 3.36
3150 3338 9.710818 AAGACTTATGGAGTACTGTATTTAGGA 57.289 33.333 0.00 0.00 39.19 2.94
3158 3346 9.310449 TCTTTAGAAAGACTTATGGAGTACTGT 57.690 33.333 0.00 0.00 39.95 3.55
3171 3359 9.396022 TCACTTGTTGAAATCTTTAGAAAGACT 57.604 29.630 6.85 0.00 46.80 3.24
3172 3360 9.439537 GTCACTTGTTGAAATCTTTAGAAAGAC 57.560 33.333 6.85 0.00 40.95 3.01
3173 3361 9.396022 AGTCACTTGTTGAAATCTTTAGAAAGA 57.604 29.630 7.15 7.15 41.72 2.52
3176 3364 9.607988 TGTAGTCACTTGTTGAAATCTTTAGAA 57.392 29.630 0.00 0.00 35.39 2.10
3177 3365 9.778741 ATGTAGTCACTTGTTGAAATCTTTAGA 57.221 29.630 0.00 0.00 35.39 2.10
3180 3368 8.495949 CGTATGTAGTCACTTGTTGAAATCTTT 58.504 33.333 0.00 0.00 35.39 2.52
3181 3369 7.870954 TCGTATGTAGTCACTTGTTGAAATCTT 59.129 33.333 0.00 0.00 35.39 2.40
3182 3370 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
3183 3371 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
3184 3372 7.870954 TCTTCGTATGTAGTCACTTGTTGAAAT 59.129 33.333 0.00 0.00 35.39 2.17
3185 3373 7.204604 TCTTCGTATGTAGTCACTTGTTGAAA 58.795 34.615 0.00 0.00 35.39 2.69
3186 3374 6.741109 TCTTCGTATGTAGTCACTTGTTGAA 58.259 36.000 0.00 0.00 35.39 2.69
3187 3375 6.321848 TCTTCGTATGTAGTCACTTGTTGA 57.678 37.500 0.00 0.00 0.00 3.18
3188 3376 7.402811 TTTCTTCGTATGTAGTCACTTGTTG 57.597 36.000 0.00 0.00 0.00 3.33
3189 3377 8.428186 TTTTTCTTCGTATGTAGTCACTTGTT 57.572 30.769 0.00 0.00 0.00 2.83
3190 3378 8.495949 CATTTTTCTTCGTATGTAGTCACTTGT 58.504 33.333 0.00 0.00 0.00 3.16
3191 3379 8.708742 TCATTTTTCTTCGTATGTAGTCACTTG 58.291 33.333 0.00 0.00 0.00 3.16
3192 3380 8.827177 TCATTTTTCTTCGTATGTAGTCACTT 57.173 30.769 0.00 0.00 0.00 3.16
3193 3381 8.088981 ACTCATTTTTCTTCGTATGTAGTCACT 58.911 33.333 0.00 0.00 0.00 3.41
3194 3382 8.162880 CACTCATTTTTCTTCGTATGTAGTCAC 58.837 37.037 0.00 0.00 0.00 3.67
3195 3383 8.085909 TCACTCATTTTTCTTCGTATGTAGTCA 58.914 33.333 0.00 0.00 0.00 3.41
3196 3384 8.462143 TCACTCATTTTTCTTCGTATGTAGTC 57.538 34.615 0.00 0.00 0.00 2.59
3197 3385 8.827177 TTCACTCATTTTTCTTCGTATGTAGT 57.173 30.769 0.00 0.00 0.00 2.73
3198 3386 9.907576 GATTCACTCATTTTTCTTCGTATGTAG 57.092 33.333 0.00 0.00 0.00 2.74
3199 3387 9.653287 AGATTCACTCATTTTTCTTCGTATGTA 57.347 29.630 0.00 0.00 0.00 2.29
3200 3388 8.553459 AGATTCACTCATTTTTCTTCGTATGT 57.447 30.769 0.00 0.00 0.00 2.29
3201 3389 9.907576 GTAGATTCACTCATTTTTCTTCGTATG 57.092 33.333 0.00 0.00 0.00 2.39
3202 3390 9.653287 TGTAGATTCACTCATTTTTCTTCGTAT 57.347 29.630 0.00 0.00 0.00 3.06
3203 3391 8.922676 GTGTAGATTCACTCATTTTTCTTCGTA 58.077 33.333 0.00 0.00 35.68 3.43
3204 3392 7.657761 AGTGTAGATTCACTCATTTTTCTTCGT 59.342 33.333 0.00 0.00 44.07 3.85
3205 3393 8.023050 AGTGTAGATTCACTCATTTTTCTTCG 57.977 34.615 0.00 0.00 44.07 3.79
3236 3424 9.865321 ACCACATACGGATGTATATAAACATAC 57.135 33.333 14.23 0.00 44.82 2.39
3239 3427 9.081204 ACTACCACATACGGATGTATATAAACA 57.919 33.333 14.23 0.00 44.82 2.83
3240 3428 9.565213 GACTACCACATACGGATGTATATAAAC 57.435 37.037 14.23 0.00 44.82 2.01
3241 3429 9.524496 AGACTACCACATACGGATGTATATAAA 57.476 33.333 14.23 0.00 44.82 1.40
3244 3432 9.696572 AATAGACTACCACATACGGATGTATAT 57.303 33.333 14.23 4.37 44.82 0.86
3245 3433 9.524496 AAATAGACTACCACATACGGATGTATA 57.476 33.333 14.23 8.27 44.82 1.47
3246 3434 8.418597 AAATAGACTACCACATACGGATGTAT 57.581 34.615 14.23 7.46 44.82 2.29
3247 3435 7.828508 AAATAGACTACCACATACGGATGTA 57.171 36.000 14.23 0.00 44.82 2.29
3249 3437 9.537192 TTTTAAATAGACTACCACATACGGATG 57.463 33.333 5.94 5.94 39.16 3.51
3281 3469 9.338622 CCTCCGTTCCTAAATATATGTCTTTTT 57.661 33.333 0.00 0.00 0.00 1.94
3282 3470 7.937394 CCCTCCGTTCCTAAATATATGTCTTTT 59.063 37.037 0.00 0.00 0.00 2.27
3283 3471 7.291651 TCCCTCCGTTCCTAAATATATGTCTTT 59.708 37.037 0.00 0.00 0.00 2.52
3284 3472 6.785963 TCCCTCCGTTCCTAAATATATGTCTT 59.214 38.462 0.00 0.00 0.00 3.01
3285 3473 6.320518 TCCCTCCGTTCCTAAATATATGTCT 58.679 40.000 0.00 0.00 0.00 3.41
3286 3474 6.210984 ACTCCCTCCGTTCCTAAATATATGTC 59.789 42.308 0.00 0.00 0.00 3.06
3287 3475 6.082707 ACTCCCTCCGTTCCTAAATATATGT 58.917 40.000 0.00 0.00 0.00 2.29
3288 3476 6.607004 ACTCCCTCCGTTCCTAAATATATG 57.393 41.667 0.00 0.00 0.00 1.78
3289 3477 7.706674 TCTACTCCCTCCGTTCCTAAATATAT 58.293 38.462 0.00 0.00 0.00 0.86
3290 3478 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
3291 3479 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
3292 3480 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
3293 3481 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
3294 3482 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
3295 3483 3.967467 ATCTACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
3296 3484 5.595814 ATTATCTACTCCCTCCGTTCCTA 57.404 43.478 0.00 0.00 0.00 2.94
3297 3485 3.967467 TTATCTACTCCCTCCGTTCCT 57.033 47.619 0.00 0.00 0.00 3.36
3298 3486 4.587684 TGAATTATCTACTCCCTCCGTTCC 59.412 45.833 0.00 0.00 0.00 3.62
3299 3487 5.786264 TGAATTATCTACTCCCTCCGTTC 57.214 43.478 0.00 0.00 0.00 3.95
3300 3488 5.012148 CCATGAATTATCTACTCCCTCCGTT 59.988 44.000 0.00 0.00 0.00 4.44
3301 3489 4.528596 CCATGAATTATCTACTCCCTCCGT 59.471 45.833 0.00 0.00 0.00 4.69
3302 3490 4.772624 TCCATGAATTATCTACTCCCTCCG 59.227 45.833 0.00 0.00 0.00 4.63
3303 3491 6.688073 TTCCATGAATTATCTACTCCCTCC 57.312 41.667 0.00 0.00 0.00 4.30
3304 3492 9.007901 CATTTTCCATGAATTATCTACTCCCTC 57.992 37.037 0.00 0.00 0.00 4.30
3305 3493 8.506083 ACATTTTCCATGAATTATCTACTCCCT 58.494 33.333 0.00 0.00 0.00 4.20
3306 3494 8.697507 ACATTTTCCATGAATTATCTACTCCC 57.302 34.615 0.00 0.00 0.00 4.30
3307 3495 9.566432 AGACATTTTCCATGAATTATCTACTCC 57.434 33.333 0.00 0.00 0.00 3.85
3312 3500 9.690913 TGAGAAGACATTTTCCATGAATTATCT 57.309 29.630 0.00 0.00 0.00 1.98
3404 3594 2.988493 CAAATTTCACACCAATCAGCGG 59.012 45.455 0.00 0.00 0.00 5.52
3463 3654 3.127548 CGATTAACTGAAACCTGCAGCAT 59.872 43.478 8.66 0.00 36.86 3.79
3539 3730 0.321671 ATCACCAGTTCCACTCCACG 59.678 55.000 0.00 0.00 0.00 4.94
3555 3746 4.633980 CGATCCATCGTGCGATCA 57.366 55.556 3.91 0.00 44.74 2.92
3575 3766 0.807496 GGTTGATGGACTGCTTGCTC 59.193 55.000 0.00 0.00 0.00 4.26
3576 3767 0.957395 CGGTTGATGGACTGCTTGCT 60.957 55.000 0.00 0.00 0.00 3.91
3626 3819 1.423395 GCTGCTGCTATATCGACCAC 58.577 55.000 8.53 0.00 36.03 4.16
3691 3884 8.736097 TTACATAGGTGGATATATGTTGGACT 57.264 34.615 3.43 0.00 41.59 3.85
3862 4070 8.080417 TCTGTAGTATTATCTGGCGTTACATTC 58.920 37.037 0.00 0.00 0.00 2.67
3896 4104 1.135972 GTGCCATGCAGAAACAGTACG 60.136 52.381 0.00 0.00 40.08 3.67
3941 4151 2.278013 GAGCTACGGTTCGGCGAG 60.278 66.667 10.46 0.54 0.00 5.03
4085 4301 2.031245 GTGGAAAATGACATGTGTGCGA 60.031 45.455 1.15 0.00 0.00 5.10
4107 4323 2.159814 CGCGCGTTGGAAAAAGTATACA 60.160 45.455 24.19 0.00 0.00 2.29
4108 4324 2.424341 CGCGCGTTGGAAAAAGTATAC 58.576 47.619 24.19 0.00 0.00 1.47
4193 4414 3.054065 CCCAAAGCAAGAGGAAGAGGTAT 60.054 47.826 0.00 0.00 0.00 2.73
4194 4415 2.305927 CCCAAAGCAAGAGGAAGAGGTA 59.694 50.000 0.00 0.00 0.00 3.08
4195 4416 1.074566 CCCAAAGCAAGAGGAAGAGGT 59.925 52.381 0.00 0.00 0.00 3.85
4206 4436 4.515028 ATCTGATCTGATCCCAAAGCAA 57.485 40.909 14.71 0.00 0.00 3.91
4238 4468 2.772515 GGGAAGGCAGATTACACTACCT 59.227 50.000 0.00 0.00 35.40 3.08
4313 4543 1.829533 ACTTTGGCAGGCACCACTG 60.830 57.895 0.00 0.00 40.19 3.66
4333 4563 1.468127 CACTGATAATGCACGCCACAA 59.532 47.619 0.00 0.00 0.00 3.33
4363 4593 1.007607 AATGGTAGTGGGGAAAGGGG 58.992 55.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.