Multiple sequence alignment - TraesCS2B01G117200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G117200 chr2B 100.000 3044 0 0 1 3044 80210829 80207786 0.000000e+00 5622.0
1 TraesCS2B01G117200 chr2B 88.803 1947 210 7 1102 3044 721733015 721731073 0.000000e+00 2381.0
2 TraesCS2B01G117200 chr2B 86.026 780 105 4 333 1110 721745438 721744661 0.000000e+00 833.0
3 TraesCS2B01G117200 chr2B 97.892 332 7 0 1 332 80251899 80251568 2.630000e-160 575.0
4 TraesCS2B01G117200 chr2D 78.627 1792 351 30 1259 3036 193160747 193158974 0.000000e+00 1158.0
5 TraesCS2B01G117200 chr1B 98.193 332 6 0 1 332 454827115 454826784 5.660000e-162 580.0
6 TraesCS2B01G117200 chr1B 97.892 332 7 0 1 332 473440931 473440600 2.630000e-160 575.0
7 TraesCS2B01G117200 chr1B 97.590 332 8 0 1 332 677964603 677964934 1.220000e-158 569.0
8 TraesCS2B01G117200 chr1B 86.912 489 64 0 2548 3036 45345533 45346021 1.600000e-152 549.0
9 TraesCS2B01G117200 chr1B 78.000 450 72 17 338 772 666296191 666296628 1.080000e-64 257.0
10 TraesCS2B01G117200 chr1B 75.615 447 94 10 335 772 230071547 230071987 1.110000e-49 207.0
11 TraesCS2B01G117200 chr1B 79.365 126 22 4 2492 2615 418531572 418531449 5.410000e-13 86.1
12 TraesCS2B01G117200 chr1B 90.698 43 3 1 1751 1792 419246947 419246905 4.240000e-04 56.5
13 TraesCS2B01G117200 chr3B 97.892 332 7 0 1 332 493915256 493915587 2.630000e-160 575.0
14 TraesCS2B01G117200 chr3B 88.710 62 4 3 1730 1789 277878580 277878640 4.210000e-09 73.1
15 TraesCS2B01G117200 chr5B 97.605 334 8 0 1 334 558578703 558578370 9.470000e-160 573.0
16 TraesCS2B01G117200 chr5B 97.598 333 8 0 1 333 77570707 77571039 3.400000e-159 571.0
17 TraesCS2B01G117200 chr7B 97.598 333 8 0 1 333 19444201 19443869 3.400000e-159 571.0
18 TraesCS2B01G117200 chr7B 97.590 332 8 0 1 332 13087462 13087793 1.220000e-158 569.0
19 TraesCS2B01G117200 chr3A 78.657 670 141 2 2376 3044 66803541 66802873 7.740000e-121 444.0
20 TraesCS2B01G117200 chr3A 73.920 602 122 23 335 916 66805536 66804950 3.080000e-50 209.0
21 TraesCS2B01G117200 chr3A 77.027 222 45 6 1697 1915 372463902 372464120 4.120000e-24 122.0
22 TraesCS2B01G117200 chr6D 75.662 604 109 22 335 925 156739458 156738880 1.800000e-67 267.0
23 TraesCS2B01G117200 chr1A 74.793 603 115 22 335 916 68409733 68410319 1.410000e-58 237.0
24 TraesCS2B01G117200 chr3D 73.147 607 131 24 2423 3013 118259362 118258772 4.010000e-44 189.0
25 TraesCS2B01G117200 chr3D 72.613 639 144 25 2390 3013 610457849 610457227 6.700000e-42 182.0
26 TraesCS2B01G117200 chr3D 75.521 192 29 14 2557 2739 348521979 348521797 9.050000e-11 78.7
27 TraesCS2B01G117200 chr6A 70.875 594 147 25 2384 2964 183168985 183168405 6.900000e-22 115.0
28 TraesCS2B01G117200 chr5D 76.316 190 31 11 2557 2739 266213229 266213411 4.180000e-14 89.8
29 TraesCS2B01G117200 chr4B 89.831 59 6 0 2557 2615 386780988 386780930 3.250000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G117200 chr2B 80207786 80210829 3043 True 5622.0 5622 100.0000 1 3044 1 chr2B.!!$R1 3043
1 TraesCS2B01G117200 chr2B 721731073 721733015 1942 True 2381.0 2381 88.8030 1102 3044 1 chr2B.!!$R3 1942
2 TraesCS2B01G117200 chr2B 721744661 721745438 777 True 833.0 833 86.0260 333 1110 1 chr2B.!!$R4 777
3 TraesCS2B01G117200 chr2D 193158974 193160747 1773 True 1158.0 1158 78.6270 1259 3036 1 chr2D.!!$R1 1777
4 TraesCS2B01G117200 chr3A 66802873 66805536 2663 True 326.5 444 76.2885 335 3044 2 chr3A.!!$R1 2709
5 TraesCS2B01G117200 chr6D 156738880 156739458 578 True 267.0 267 75.6620 335 925 1 chr6D.!!$R1 590
6 TraesCS2B01G117200 chr1A 68409733 68410319 586 False 237.0 237 74.7930 335 916 1 chr1A.!!$F1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.100682 TCGCGCTCCATAGTCTTCAC 59.899 55.0 5.56 0.0 0.00 3.18 F
1233 1265 0.036022 AGCAAGCTGTTGAGGAGACC 59.964 55.0 0.00 0.0 35.46 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1947 1979 0.041535 TTGCCTTCTTGGGGATGCAT 59.958 50.0 0.0 0.0 33.92 3.96 R
2970 3008 0.034059 AACACCAGTCCAGCTTCTCG 59.966 55.0 0.0 0.0 0.00 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.067365 ACTTTGTTCACTTGGACCCC 57.933 50.000 0.00 0.00 0.00 4.95
20 21 1.286553 ACTTTGTTCACTTGGACCCCA 59.713 47.619 0.00 0.00 0.00 4.96
21 22 1.681264 CTTTGTTCACTTGGACCCCAC 59.319 52.381 0.00 0.00 30.78 4.61
22 23 0.923358 TTGTTCACTTGGACCCCACT 59.077 50.000 0.00 0.00 30.78 4.00
23 24 0.923358 TGTTCACTTGGACCCCACTT 59.077 50.000 0.00 0.00 30.78 3.16
24 25 2.128535 TGTTCACTTGGACCCCACTTA 58.871 47.619 0.00 0.00 30.78 2.24
25 26 2.510382 TGTTCACTTGGACCCCACTTAA 59.490 45.455 0.00 0.00 30.78 1.85
26 27 2.882761 GTTCACTTGGACCCCACTTAAC 59.117 50.000 0.00 0.00 30.78 2.01
27 28 2.128535 TCACTTGGACCCCACTTAACA 58.871 47.619 0.00 0.00 30.78 2.41
28 29 2.105821 TCACTTGGACCCCACTTAACAG 59.894 50.000 0.00 0.00 30.78 3.16
29 30 2.132686 ACTTGGACCCCACTTAACAGT 58.867 47.619 0.00 0.00 30.78 3.55
39 40 3.609103 CACTTAACAGTGCAGTGGTTC 57.391 47.619 24.91 0.00 44.16 3.62
40 41 2.290641 CACTTAACAGTGCAGTGGTTCC 59.709 50.000 24.91 0.00 44.16 3.62
41 42 2.172717 ACTTAACAGTGCAGTGGTTCCT 59.827 45.455 24.91 0.87 0.00 3.36
42 43 3.389983 ACTTAACAGTGCAGTGGTTCCTA 59.610 43.478 24.91 0.62 0.00 2.94
43 44 4.041691 ACTTAACAGTGCAGTGGTTCCTAT 59.958 41.667 24.91 0.00 0.00 2.57
44 45 2.479566 ACAGTGCAGTGGTTCCTATG 57.520 50.000 24.91 0.00 0.00 2.23
45 46 1.977854 ACAGTGCAGTGGTTCCTATGA 59.022 47.619 24.91 0.00 0.00 2.15
46 47 2.289694 ACAGTGCAGTGGTTCCTATGAC 60.290 50.000 24.91 0.00 0.00 3.06
47 48 2.027745 CAGTGCAGTGGTTCCTATGACT 60.028 50.000 14.08 0.00 0.00 3.41
48 49 2.234908 AGTGCAGTGGTTCCTATGACTC 59.765 50.000 0.00 0.00 0.00 3.36
49 50 2.028112 GTGCAGTGGTTCCTATGACTCA 60.028 50.000 0.00 0.00 0.00 3.41
50 51 2.637382 TGCAGTGGTTCCTATGACTCAA 59.363 45.455 0.00 0.00 0.00 3.02
51 52 3.003480 GCAGTGGTTCCTATGACTCAAC 58.997 50.000 0.00 0.00 0.00 3.18
52 53 3.557054 GCAGTGGTTCCTATGACTCAACA 60.557 47.826 0.00 0.00 0.00 3.33
53 54 4.641396 CAGTGGTTCCTATGACTCAACAA 58.359 43.478 0.00 0.00 0.00 2.83
54 55 5.063204 CAGTGGTTCCTATGACTCAACAAA 58.937 41.667 0.00 0.00 0.00 2.83
55 56 5.180117 CAGTGGTTCCTATGACTCAACAAAG 59.820 44.000 0.00 0.00 0.00 2.77
56 57 5.071788 AGTGGTTCCTATGACTCAACAAAGA 59.928 40.000 0.00 0.00 0.00 2.52
57 58 5.763204 GTGGTTCCTATGACTCAACAAAGAA 59.237 40.000 0.00 0.00 0.00 2.52
58 59 5.997746 TGGTTCCTATGACTCAACAAAGAAG 59.002 40.000 0.00 0.00 0.00 2.85
59 60 6.183361 TGGTTCCTATGACTCAACAAAGAAGA 60.183 38.462 0.00 0.00 0.00 2.87
60 61 6.710744 GGTTCCTATGACTCAACAAAGAAGAA 59.289 38.462 0.00 0.00 0.00 2.52
61 62 7.228706 GGTTCCTATGACTCAACAAAGAAGAAA 59.771 37.037 0.00 0.00 0.00 2.52
62 63 8.621286 GTTCCTATGACTCAACAAAGAAGAAAA 58.379 33.333 0.00 0.00 0.00 2.29
63 64 8.383318 TCCTATGACTCAACAAAGAAGAAAAG 57.617 34.615 0.00 0.00 0.00 2.27
64 65 8.210946 TCCTATGACTCAACAAAGAAGAAAAGA 58.789 33.333 0.00 0.00 0.00 2.52
65 66 8.840321 CCTATGACTCAACAAAGAAGAAAAGAA 58.160 33.333 0.00 0.00 0.00 2.52
67 68 8.917415 ATGACTCAACAAAGAAGAAAAGAAAC 57.083 30.769 0.00 0.00 0.00 2.78
68 69 7.881142 TGACTCAACAAAGAAGAAAAGAAACA 58.119 30.769 0.00 0.00 0.00 2.83
69 70 8.356657 TGACTCAACAAAGAAGAAAAGAAACAA 58.643 29.630 0.00 0.00 0.00 2.83
70 71 8.520835 ACTCAACAAAGAAGAAAAGAAACAAC 57.479 30.769 0.00 0.00 0.00 3.32
71 72 8.141268 ACTCAACAAAGAAGAAAAGAAACAACA 58.859 29.630 0.00 0.00 0.00 3.33
72 73 8.879342 TCAACAAAGAAGAAAAGAAACAACAA 57.121 26.923 0.00 0.00 0.00 2.83
73 74 9.319143 TCAACAAAGAAGAAAAGAAACAACAAA 57.681 25.926 0.00 0.00 0.00 2.83
74 75 9.928236 CAACAAAGAAGAAAAGAAACAACAAAA 57.072 25.926 0.00 0.00 0.00 2.44
75 76 9.929722 AACAAAGAAGAAAAGAAACAACAAAAC 57.070 25.926 0.00 0.00 0.00 2.43
76 77 9.325198 ACAAAGAAGAAAAGAAACAACAAAACT 57.675 25.926 0.00 0.00 0.00 2.66
88 89 8.601476 AGAAACAACAAAACTACTAAGTCTTCG 58.399 33.333 0.00 0.00 33.75 3.79
89 90 6.283161 ACAACAAAACTACTAAGTCTTCGC 57.717 37.500 0.00 0.00 33.75 4.70
90 91 5.051240 ACAACAAAACTACTAAGTCTTCGCG 60.051 40.000 0.00 0.00 33.75 5.87
91 92 3.427863 ACAAAACTACTAAGTCTTCGCGC 59.572 43.478 0.00 0.00 33.75 6.86
92 93 3.572604 AAACTACTAAGTCTTCGCGCT 57.427 42.857 5.56 0.00 33.75 5.92
93 94 2.828874 ACTACTAAGTCTTCGCGCTC 57.171 50.000 5.56 0.00 0.00 5.03
94 95 1.401199 ACTACTAAGTCTTCGCGCTCC 59.599 52.381 5.56 0.00 0.00 4.70
95 96 1.400846 CTACTAAGTCTTCGCGCTCCA 59.599 52.381 5.56 0.00 0.00 3.86
96 97 0.818296 ACTAAGTCTTCGCGCTCCAT 59.182 50.000 5.56 0.00 0.00 3.41
97 98 2.022195 ACTAAGTCTTCGCGCTCCATA 58.978 47.619 5.56 0.00 0.00 2.74
98 99 2.033550 ACTAAGTCTTCGCGCTCCATAG 59.966 50.000 5.56 2.18 0.00 2.23
99 100 0.818296 AAGTCTTCGCGCTCCATAGT 59.182 50.000 5.56 0.00 0.00 2.12
100 101 0.382515 AGTCTTCGCGCTCCATAGTC 59.617 55.000 5.56 0.00 0.00 2.59
101 102 0.382515 GTCTTCGCGCTCCATAGTCT 59.617 55.000 5.56 0.00 0.00 3.24
102 103 1.103803 TCTTCGCGCTCCATAGTCTT 58.896 50.000 5.56 0.00 0.00 3.01
103 104 1.065701 TCTTCGCGCTCCATAGTCTTC 59.934 52.381 5.56 0.00 0.00 2.87
104 105 0.815095 TTCGCGCTCCATAGTCTTCA 59.185 50.000 5.56 0.00 0.00 3.02
105 106 0.100682 TCGCGCTCCATAGTCTTCAC 59.899 55.000 5.56 0.00 0.00 3.18
106 107 0.101399 CGCGCTCCATAGTCTTCACT 59.899 55.000 5.56 0.00 36.55 3.41
107 108 1.846541 GCGCTCCATAGTCTTCACTC 58.153 55.000 0.00 0.00 33.62 3.51
108 109 1.135139 GCGCTCCATAGTCTTCACTCA 59.865 52.381 0.00 0.00 33.62 3.41
109 110 2.417379 GCGCTCCATAGTCTTCACTCAA 60.417 50.000 0.00 0.00 33.62 3.02
110 111 3.739519 GCGCTCCATAGTCTTCACTCAAT 60.740 47.826 0.00 0.00 33.62 2.57
111 112 3.801050 CGCTCCATAGTCTTCACTCAATG 59.199 47.826 0.00 0.00 33.62 2.82
112 113 4.679106 CGCTCCATAGTCTTCACTCAATGT 60.679 45.833 0.00 0.00 33.62 2.71
113 114 4.808364 GCTCCATAGTCTTCACTCAATGTC 59.192 45.833 0.00 0.00 33.62 3.06
114 115 5.395103 GCTCCATAGTCTTCACTCAATGTCT 60.395 44.000 0.00 0.00 33.62 3.41
115 116 6.611613 TCCATAGTCTTCACTCAATGTCTT 57.388 37.500 0.00 0.00 33.62 3.01
116 117 6.634805 TCCATAGTCTTCACTCAATGTCTTC 58.365 40.000 0.00 0.00 33.62 2.87
117 118 6.438741 TCCATAGTCTTCACTCAATGTCTTCT 59.561 38.462 0.00 0.00 33.62 2.85
118 119 7.038729 TCCATAGTCTTCACTCAATGTCTTCTT 60.039 37.037 0.00 0.00 33.62 2.52
119 120 8.253810 CCATAGTCTTCACTCAATGTCTTCTTA 58.746 37.037 0.00 0.00 33.62 2.10
120 121 9.814899 CATAGTCTTCACTCAATGTCTTCTTAT 57.185 33.333 0.00 0.00 33.62 1.73
121 122 9.814899 ATAGTCTTCACTCAATGTCTTCTTATG 57.185 33.333 0.00 0.00 33.62 1.90
122 123 7.675062 AGTCTTCACTCAATGTCTTCTTATGT 58.325 34.615 0.00 0.00 0.00 2.29
123 124 7.816995 AGTCTTCACTCAATGTCTTCTTATGTC 59.183 37.037 0.00 0.00 0.00 3.06
124 125 7.600375 GTCTTCACTCAATGTCTTCTTATGTCA 59.400 37.037 0.00 0.00 0.00 3.58
125 126 8.316946 TCTTCACTCAATGTCTTCTTATGTCAT 58.683 33.333 0.00 0.00 0.00 3.06
126 127 9.591792 CTTCACTCAATGTCTTCTTATGTCATA 57.408 33.333 0.00 0.00 0.00 2.15
127 128 9.591792 TTCACTCAATGTCTTCTTATGTCATAG 57.408 33.333 0.00 0.00 0.00 2.23
128 129 8.753133 TCACTCAATGTCTTCTTATGTCATAGT 58.247 33.333 0.00 0.00 0.00 2.12
129 130 9.029243 CACTCAATGTCTTCTTATGTCATAGTC 57.971 37.037 0.00 0.00 0.00 2.59
130 131 8.976353 ACTCAATGTCTTCTTATGTCATAGTCT 58.024 33.333 0.00 0.00 0.00 3.24
131 132 9.814899 CTCAATGTCTTCTTATGTCATAGTCTT 57.185 33.333 0.00 0.00 0.00 3.01
132 133 9.809096 TCAATGTCTTCTTATGTCATAGTCTTC 57.191 33.333 0.00 0.00 0.00 2.87
133 134 9.591792 CAATGTCTTCTTATGTCATAGTCTTCA 57.408 33.333 0.00 0.00 0.00 3.02
134 135 9.814899 AATGTCTTCTTATGTCATAGTCTTCAG 57.185 33.333 0.00 0.00 0.00 3.02
135 136 8.354711 TGTCTTCTTATGTCATAGTCTTCAGT 57.645 34.615 0.00 0.00 0.00 3.41
136 137 8.246871 TGTCTTCTTATGTCATAGTCTTCAGTG 58.753 37.037 0.00 0.00 0.00 3.66
137 138 8.247562 GTCTTCTTATGTCATAGTCTTCAGTGT 58.752 37.037 0.00 0.00 0.00 3.55
138 139 8.246871 TCTTCTTATGTCATAGTCTTCAGTGTG 58.753 37.037 0.00 0.00 0.00 3.82
139 140 7.703058 TCTTATGTCATAGTCTTCAGTGTGA 57.297 36.000 0.00 0.00 0.00 3.58
140 141 8.122472 TCTTATGTCATAGTCTTCAGTGTGAA 57.878 34.615 0.00 0.00 34.79 3.18
141 142 8.753133 TCTTATGTCATAGTCTTCAGTGTGAAT 58.247 33.333 0.00 0.00 35.59 2.57
142 143 8.707938 TTATGTCATAGTCTTCAGTGTGAATG 57.292 34.615 0.00 0.00 35.59 2.67
143 144 6.101650 TGTCATAGTCTTCAGTGTGAATGT 57.898 37.500 0.00 0.00 35.59 2.71
144 145 6.159293 TGTCATAGTCTTCAGTGTGAATGTC 58.841 40.000 0.00 0.00 35.59 3.06
145 146 6.015095 TGTCATAGTCTTCAGTGTGAATGTCT 60.015 38.462 0.00 0.00 35.59 3.41
146 147 6.870965 GTCATAGTCTTCAGTGTGAATGTCTT 59.129 38.462 0.00 0.00 35.59 3.01
147 148 7.062839 GTCATAGTCTTCAGTGTGAATGTCTTC 59.937 40.741 0.00 0.00 35.59 2.87
148 149 5.282055 AGTCTTCAGTGTGAATGTCTTCA 57.718 39.130 0.00 0.00 39.07 3.02
157 158 3.034721 TGAATGTCTTCACGTACCACC 57.965 47.619 0.00 0.00 36.46 4.61
158 159 2.365941 TGAATGTCTTCACGTACCACCA 59.634 45.455 0.00 0.00 36.46 4.17
159 160 3.007506 TGAATGTCTTCACGTACCACCAT 59.992 43.478 0.00 0.00 36.46 3.55
160 161 3.695830 ATGTCTTCACGTACCACCATT 57.304 42.857 0.00 0.00 0.00 3.16
161 162 4.811969 ATGTCTTCACGTACCACCATTA 57.188 40.909 0.00 0.00 0.00 1.90
162 163 4.811969 TGTCTTCACGTACCACCATTAT 57.188 40.909 0.00 0.00 0.00 1.28
163 164 4.751060 TGTCTTCACGTACCACCATTATC 58.249 43.478 0.00 0.00 0.00 1.75
164 165 4.464951 TGTCTTCACGTACCACCATTATCT 59.535 41.667 0.00 0.00 0.00 1.98
165 166 5.046878 TGTCTTCACGTACCACCATTATCTT 60.047 40.000 0.00 0.00 0.00 2.40
166 167 5.519206 GTCTTCACGTACCACCATTATCTTC 59.481 44.000 0.00 0.00 0.00 2.87
167 168 5.186215 TCTTCACGTACCACCATTATCTTCA 59.814 40.000 0.00 0.00 0.00 3.02
168 169 5.408880 TCACGTACCACCATTATCTTCAA 57.591 39.130 0.00 0.00 0.00 2.69
169 170 5.984725 TCACGTACCACCATTATCTTCAAT 58.015 37.500 0.00 0.00 0.00 2.57
170 171 5.815222 TCACGTACCACCATTATCTTCAATG 59.185 40.000 0.00 0.00 35.97 2.82
171 172 5.584649 CACGTACCACCATTATCTTCAATGT 59.415 40.000 0.00 0.00 34.67 2.71
172 173 5.815740 ACGTACCACCATTATCTTCAATGTC 59.184 40.000 0.00 0.00 34.67 3.06
173 174 6.049149 CGTACCACCATTATCTTCAATGTCT 58.951 40.000 0.00 0.00 34.67 3.41
174 175 6.538742 CGTACCACCATTATCTTCAATGTCTT 59.461 38.462 0.00 0.00 34.67 3.01
175 176 7.254455 CGTACCACCATTATCTTCAATGTCTTC 60.254 40.741 0.00 0.00 34.67 2.87
176 177 6.484288 ACCACCATTATCTTCAATGTCTTCA 58.516 36.000 0.00 0.00 34.67 3.02
177 178 7.121382 ACCACCATTATCTTCAATGTCTTCAT 58.879 34.615 0.00 0.00 34.67 2.57
178 179 8.274322 ACCACCATTATCTTCAATGTCTTCATA 58.726 33.333 0.00 0.00 34.67 2.15
179 180 9.123902 CCACCATTATCTTCAATGTCTTCATAA 57.876 33.333 0.00 0.00 34.67 1.90
191 192 9.320295 TCAATGTCTTCATAAATTTTTAGGGGT 57.680 29.630 0.00 0.00 33.49 4.95
192 193 9.586435 CAATGTCTTCATAAATTTTTAGGGGTC 57.414 33.333 0.00 0.00 33.49 4.46
193 194 8.893563 ATGTCTTCATAAATTTTTAGGGGTCA 57.106 30.769 0.00 0.00 31.89 4.02
194 195 8.893563 TGTCTTCATAAATTTTTAGGGGTCAT 57.106 30.769 0.00 0.00 0.00 3.06
195 196 8.966868 TGTCTTCATAAATTTTTAGGGGTCATC 58.033 33.333 0.00 0.00 0.00 2.92
196 197 9.190317 GTCTTCATAAATTTTTAGGGGTCATCT 57.810 33.333 0.00 0.00 0.00 2.90
197 198 9.768215 TCTTCATAAATTTTTAGGGGTCATCTT 57.232 29.630 0.00 0.00 0.00 2.40
199 200 8.220755 TCATAAATTTTTAGGGGTCATCTTCG 57.779 34.615 0.00 0.00 0.00 3.79
200 201 8.050325 TCATAAATTTTTAGGGGTCATCTTCGA 58.950 33.333 0.00 0.00 0.00 3.71
201 202 8.850156 CATAAATTTTTAGGGGTCATCTTCGAT 58.150 33.333 0.00 0.00 0.00 3.59
203 204 8.451908 AAATTTTTAGGGGTCATCTTCGATAG 57.548 34.615 0.00 0.00 0.00 2.08
204 205 5.546621 TTTTAGGGGTCATCTTCGATAGG 57.453 43.478 0.00 0.00 0.00 2.57
205 206 2.777459 AGGGGTCATCTTCGATAGGT 57.223 50.000 0.00 0.00 0.00 3.08
206 207 3.897657 AGGGGTCATCTTCGATAGGTA 57.102 47.619 0.00 0.00 0.00 3.08
207 208 4.194678 AGGGGTCATCTTCGATAGGTAA 57.805 45.455 0.00 0.00 0.00 2.85
208 209 4.553678 AGGGGTCATCTTCGATAGGTAAA 58.446 43.478 0.00 0.00 0.00 2.01
209 210 4.344390 AGGGGTCATCTTCGATAGGTAAAC 59.656 45.833 0.00 0.00 0.00 2.01
210 211 4.502777 GGGGTCATCTTCGATAGGTAAACC 60.503 50.000 0.00 0.00 0.00 3.27
211 212 4.296690 GGTCATCTTCGATAGGTAAACCG 58.703 47.826 0.00 0.00 42.08 4.44
212 213 4.037208 GGTCATCTTCGATAGGTAAACCGA 59.963 45.833 0.00 0.00 42.08 4.69
213 214 5.450965 GGTCATCTTCGATAGGTAAACCGAA 60.451 44.000 0.00 0.00 42.08 4.30
214 215 6.214399 GTCATCTTCGATAGGTAAACCGAAT 58.786 40.000 0.00 0.00 39.76 3.34
215 216 6.362820 GTCATCTTCGATAGGTAAACCGAATC 59.637 42.308 0.00 7.21 39.76 2.52
216 217 5.840243 TCTTCGATAGGTAAACCGAATCA 57.160 39.130 14.17 3.62 39.76 2.57
217 218 6.211587 TCTTCGATAGGTAAACCGAATCAA 57.788 37.500 14.17 8.76 39.76 2.57
218 219 6.270815 TCTTCGATAGGTAAACCGAATCAAG 58.729 40.000 14.17 14.44 39.76 3.02
219 220 4.940463 TCGATAGGTAAACCGAATCAAGG 58.060 43.478 14.17 3.22 42.08 3.61
220 221 4.646040 TCGATAGGTAAACCGAATCAAGGA 59.354 41.667 14.17 4.87 42.08 3.36
221 222 4.982916 CGATAGGTAAACCGAATCAAGGAG 59.017 45.833 14.17 0.00 42.08 3.69
222 223 3.629142 AGGTAAACCGAATCAAGGAGG 57.371 47.619 0.00 0.00 42.08 4.30
223 224 2.238898 AGGTAAACCGAATCAAGGAGGG 59.761 50.000 0.00 0.00 42.08 4.30
224 225 2.237893 GGTAAACCGAATCAAGGAGGGA 59.762 50.000 0.00 0.00 0.00 4.20
225 226 2.491675 AAACCGAATCAAGGAGGGAC 57.508 50.000 0.00 0.00 0.00 4.46
226 227 8.971571 TAGGTAAACCGAATCAAGGAGGGACT 62.972 46.154 0.00 0.00 41.92 3.85
227 228 2.544844 ACCGAATCAAGGAGGGACTA 57.455 50.000 0.00 0.00 41.55 2.59
228 229 2.829023 ACCGAATCAAGGAGGGACTAA 58.171 47.619 0.00 0.00 41.55 2.24
229 230 3.385115 ACCGAATCAAGGAGGGACTAAT 58.615 45.455 0.00 0.00 41.55 1.73
230 231 4.553678 ACCGAATCAAGGAGGGACTAATA 58.446 43.478 0.00 0.00 41.55 0.98
231 232 4.344390 ACCGAATCAAGGAGGGACTAATAC 59.656 45.833 0.00 0.00 41.55 1.89
232 233 4.262506 CCGAATCAAGGAGGGACTAATACC 60.263 50.000 0.00 0.00 41.55 2.73
233 234 4.589374 CGAATCAAGGAGGGACTAATACCT 59.411 45.833 0.00 0.00 44.86 3.08
234 235 5.509840 CGAATCAAGGAGGGACTAATACCTG 60.510 48.000 0.00 0.00 40.52 4.00
235 236 4.348020 TCAAGGAGGGACTAATACCTGT 57.652 45.455 0.00 0.00 40.52 4.00
236 237 4.030913 TCAAGGAGGGACTAATACCTGTG 58.969 47.826 0.00 0.00 40.52 3.66
237 238 3.775316 CAAGGAGGGACTAATACCTGTGT 59.225 47.826 0.00 0.00 40.52 3.72
238 239 4.076175 AGGAGGGACTAATACCTGTGTT 57.924 45.455 0.00 0.00 40.52 3.32
239 240 5.216665 AGGAGGGACTAATACCTGTGTTA 57.783 43.478 0.00 0.00 40.52 2.41
240 241 5.789535 AGGAGGGACTAATACCTGTGTTAT 58.210 41.667 0.00 0.00 40.52 1.89
241 242 5.839606 AGGAGGGACTAATACCTGTGTTATC 59.160 44.000 0.00 0.00 40.52 1.75
242 243 5.011840 GGAGGGACTAATACCTGTGTTATCC 59.988 48.000 0.00 0.00 40.52 2.59
243 244 5.789535 AGGGACTAATACCTGTGTTATCCT 58.210 41.667 11.30 0.00 38.01 3.24
244 245 5.602978 AGGGACTAATACCTGTGTTATCCTG 59.397 44.000 11.30 0.00 38.01 3.86
245 246 5.298347 GGACTAATACCTGTGTTATCCTGC 58.702 45.833 0.00 0.00 0.00 4.85
246 247 5.163343 GGACTAATACCTGTGTTATCCTGCA 60.163 44.000 0.00 0.00 0.00 4.41
247 248 6.308015 ACTAATACCTGTGTTATCCTGCAA 57.692 37.500 0.00 0.00 0.00 4.08
248 249 6.900194 ACTAATACCTGTGTTATCCTGCAAT 58.100 36.000 0.00 0.00 0.00 3.56
249 250 7.346471 ACTAATACCTGTGTTATCCTGCAATT 58.654 34.615 0.00 0.00 0.00 2.32
250 251 6.699575 AATACCTGTGTTATCCTGCAATTC 57.300 37.500 0.00 0.00 0.00 2.17
251 252 4.307032 ACCTGTGTTATCCTGCAATTCT 57.693 40.909 0.00 0.00 0.00 2.40
252 253 4.265073 ACCTGTGTTATCCTGCAATTCTC 58.735 43.478 0.00 0.00 0.00 2.87
253 254 4.263462 ACCTGTGTTATCCTGCAATTCTCA 60.263 41.667 0.00 0.00 0.00 3.27
254 255 4.095483 CCTGTGTTATCCTGCAATTCTCAC 59.905 45.833 0.00 0.00 0.00 3.51
255 256 4.650734 TGTGTTATCCTGCAATTCTCACA 58.349 39.130 0.00 0.00 0.00 3.58
256 257 5.069318 TGTGTTATCCTGCAATTCTCACAA 58.931 37.500 7.48 0.00 31.85 3.33
257 258 5.534278 TGTGTTATCCTGCAATTCTCACAAA 59.466 36.000 7.48 0.00 31.85 2.83
258 259 5.858581 GTGTTATCCTGCAATTCTCACAAAC 59.141 40.000 0.00 0.00 0.00 2.93
259 260 5.534278 TGTTATCCTGCAATTCTCACAAACA 59.466 36.000 0.00 0.00 0.00 2.83
260 261 3.988379 TCCTGCAATTCTCACAAACAC 57.012 42.857 0.00 0.00 0.00 3.32
261 262 3.286353 TCCTGCAATTCTCACAAACACA 58.714 40.909 0.00 0.00 0.00 3.72
262 263 3.890756 TCCTGCAATTCTCACAAACACAT 59.109 39.130 0.00 0.00 0.00 3.21
263 264 4.341806 TCCTGCAATTCTCACAAACACATT 59.658 37.500 0.00 0.00 0.00 2.71
264 265 5.534278 TCCTGCAATTCTCACAAACACATTA 59.466 36.000 0.00 0.00 0.00 1.90
265 266 5.860182 CCTGCAATTCTCACAAACACATTAG 59.140 40.000 0.00 0.00 0.00 1.73
266 267 6.389830 TGCAATTCTCACAAACACATTAGT 57.610 33.333 0.00 0.00 0.00 2.24
267 268 6.437928 TGCAATTCTCACAAACACATTAGTC 58.562 36.000 0.00 0.00 0.00 2.59
268 269 5.858581 GCAATTCTCACAAACACATTAGTCC 59.141 40.000 0.00 0.00 0.00 3.85
269 270 6.381801 CAATTCTCACAAACACATTAGTCCC 58.618 40.000 0.00 0.00 0.00 4.46
270 271 4.974645 TCTCACAAACACATTAGTCCCT 57.025 40.909 0.00 0.00 0.00 4.20
271 272 4.894784 TCTCACAAACACATTAGTCCCTC 58.105 43.478 0.00 0.00 0.00 4.30
272 273 4.346709 TCTCACAAACACATTAGTCCCTCA 59.653 41.667 0.00 0.00 0.00 3.86
273 274 5.042463 TCACAAACACATTAGTCCCTCAA 57.958 39.130 0.00 0.00 0.00 3.02
274 275 4.819630 TCACAAACACATTAGTCCCTCAAC 59.180 41.667 0.00 0.00 0.00 3.18
275 276 4.023193 CACAAACACATTAGTCCCTCAACC 60.023 45.833 0.00 0.00 0.00 3.77
276 277 4.141287 CAAACACATTAGTCCCTCAACCA 58.859 43.478 0.00 0.00 0.00 3.67
277 278 3.418684 ACACATTAGTCCCTCAACCAC 57.581 47.619 0.00 0.00 0.00 4.16
278 279 2.289444 ACACATTAGTCCCTCAACCACG 60.289 50.000 0.00 0.00 0.00 4.94
279 280 1.975680 ACATTAGTCCCTCAACCACGT 59.024 47.619 0.00 0.00 0.00 4.49
280 281 2.370849 ACATTAGTCCCTCAACCACGTT 59.629 45.455 0.00 0.00 0.00 3.99
281 282 3.181448 ACATTAGTCCCTCAACCACGTTT 60.181 43.478 0.00 0.00 0.00 3.60
282 283 2.536761 TAGTCCCTCAACCACGTTTG 57.463 50.000 0.00 0.00 0.00 2.93
283 284 0.544697 AGTCCCTCAACCACGTTTGT 59.455 50.000 0.21 0.00 0.00 2.83
284 285 0.942252 GTCCCTCAACCACGTTTGTC 59.058 55.000 0.21 0.00 0.00 3.18
285 286 0.531090 TCCCTCAACCACGTTTGTCG 60.531 55.000 0.21 0.00 46.00 4.35
298 299 4.718858 CGTTTGTCGTCAATACTCCAAA 57.281 40.909 0.00 0.00 33.32 3.28
299 300 5.085636 CGTTTGTCGTCAATACTCCAAAA 57.914 39.130 0.00 0.00 33.32 2.44
300 301 4.901881 CGTTTGTCGTCAATACTCCAAAAC 59.098 41.667 0.00 0.00 33.32 2.43
301 302 5.209977 GTTTGTCGTCAATACTCCAAAACC 58.790 41.667 0.00 0.00 33.32 3.27
302 303 4.074627 TGTCGTCAATACTCCAAAACCA 57.925 40.909 0.00 0.00 0.00 3.67
303 304 4.452825 TGTCGTCAATACTCCAAAACCAA 58.547 39.130 0.00 0.00 0.00 3.67
304 305 4.882427 TGTCGTCAATACTCCAAAACCAAA 59.118 37.500 0.00 0.00 0.00 3.28
305 306 5.209977 GTCGTCAATACTCCAAAACCAAAC 58.790 41.667 0.00 0.00 0.00 2.93
306 307 5.008316 GTCGTCAATACTCCAAAACCAAACT 59.992 40.000 0.00 0.00 0.00 2.66
307 308 6.203338 GTCGTCAATACTCCAAAACCAAACTA 59.797 38.462 0.00 0.00 0.00 2.24
308 309 6.425721 TCGTCAATACTCCAAAACCAAACTAG 59.574 38.462 0.00 0.00 0.00 2.57
309 310 6.348213 CGTCAATACTCCAAAACCAAACTAGG 60.348 42.308 0.00 0.00 0.00 3.02
310 311 6.007703 TCAATACTCCAAAACCAAACTAGGG 58.992 40.000 0.00 0.00 0.00 3.53
311 312 3.238788 ACTCCAAAACCAAACTAGGGG 57.761 47.619 0.00 0.00 0.00 4.79
312 313 2.516702 ACTCCAAAACCAAACTAGGGGT 59.483 45.455 0.00 0.00 39.65 4.95
313 314 2.890945 CTCCAAAACCAAACTAGGGGTG 59.109 50.000 4.05 0.00 37.50 4.61
314 315 1.967779 CCAAAACCAAACTAGGGGTGG 59.032 52.381 4.05 5.59 37.50 4.61
315 316 1.343142 CAAAACCAAACTAGGGGTGGC 59.657 52.381 8.16 0.00 37.50 5.01
316 317 0.558712 AAACCAAACTAGGGGTGGCA 59.441 50.000 8.16 0.00 37.50 4.92
317 318 0.178973 AACCAAACTAGGGGTGGCAC 60.179 55.000 9.70 9.70 37.50 5.01
318 319 1.065997 ACCAAACTAGGGGTGGCACT 61.066 55.000 18.45 0.00 35.67 4.40
319 320 0.988832 CCAAACTAGGGGTGGCACTA 59.011 55.000 18.45 0.98 0.00 2.74
320 321 1.065418 CCAAACTAGGGGTGGCACTAG 60.065 57.143 18.45 13.59 41.83 2.57
321 322 1.906574 CAAACTAGGGGTGGCACTAGA 59.093 52.381 18.45 0.00 39.16 2.43
322 323 2.505819 CAAACTAGGGGTGGCACTAGAT 59.494 50.000 18.45 3.55 39.16 1.98
323 324 1.794714 ACTAGGGGTGGCACTAGATG 58.205 55.000 18.45 8.10 39.16 2.90
341 342 2.445682 TGCACTTACACCCCTTTTGT 57.554 45.000 0.00 0.00 0.00 2.83
357 358 3.673543 TTTGTTAACCCTCACCCTGTT 57.326 42.857 2.48 0.00 0.00 3.16
369 370 0.469705 ACCCTGTTCCAATGCAAGCA 60.470 50.000 0.00 0.00 0.00 3.91
381 382 4.059511 CAATGCAAGCAAACTTCCATCAA 58.940 39.130 0.00 0.00 32.94 2.57
384 385 4.706035 TGCAAGCAAACTTCCATCAAAAT 58.294 34.783 0.00 0.00 32.29 1.82
414 415 5.779241 ATCATTTTCTGGGTCCTCTACAA 57.221 39.130 0.00 0.00 0.00 2.41
447 448 2.027377 AGAGAACAATGTCCAGCCTCAG 60.027 50.000 0.00 0.00 0.00 3.35
465 466 4.121317 CTCAGCAACCTGATCTGAATCTC 58.879 47.826 0.38 0.00 46.44 2.75
471 472 3.921104 ACCTGATCTGAATCTCCAGCTA 58.079 45.455 0.38 0.00 34.28 3.32
479 480 3.577848 CTGAATCTCCAGCTAGCACCTAT 59.422 47.826 18.83 0.54 0.00 2.57
481 482 4.410228 TGAATCTCCAGCTAGCACCTATTT 59.590 41.667 18.83 3.57 0.00 1.40
483 484 6.099701 TGAATCTCCAGCTAGCACCTATTTTA 59.900 38.462 18.83 0.00 0.00 1.52
485 486 4.962995 TCTCCAGCTAGCACCTATTTTAGT 59.037 41.667 18.83 0.00 0.00 2.24
489 490 6.610020 TCCAGCTAGCACCTATTTTAGTAGAA 59.390 38.462 18.83 0.00 0.00 2.10
492 493 7.650104 CAGCTAGCACCTATTTTAGTAGAAGAC 59.350 40.741 18.83 0.00 0.00 3.01
528 538 0.849094 TAGAAATGCCTGGGTGGGGT 60.849 55.000 0.00 0.00 36.00 4.95
561 571 2.035066 GCCTGCTGTGAATGAACTTGTT 59.965 45.455 0.00 0.00 0.00 2.83
672 688 7.490657 TGGTCAAGGTAATAGTAACATCACT 57.509 36.000 0.00 0.00 0.00 3.41
678 694 9.436957 CAAGGTAATAGTAACATCACTGTTTCT 57.563 33.333 0.00 0.15 43.05 2.52
701 717 1.279271 GGAGCCACCTAATGACAGTGT 59.721 52.381 0.00 0.00 35.41 3.55
709 725 5.056480 CACCTAATGACAGTGTTGAGACAA 58.944 41.667 0.00 0.00 37.57 3.18
744 760 2.188912 GCCTTTGGCGCCATTTCTA 58.811 52.632 33.25 12.81 39.62 2.10
757 773 5.679638 GCGCCATTTCTACCTGATTTGAATT 60.680 40.000 0.00 0.00 0.00 2.17
772 788 1.055849 GAATTTGGTGGTTGGGCCTT 58.944 50.000 4.53 0.00 38.35 4.35
774 790 0.190815 ATTTGGTGGTTGGGCCTTCT 59.809 50.000 4.53 0.00 38.35 2.85
778 794 1.456287 GTGGTTGGGCCTTCTGAGT 59.544 57.895 4.53 0.00 38.35 3.41
784 800 3.454812 GGTTGGGCCTTCTGAGTAGAATA 59.545 47.826 4.53 0.00 41.83 1.75
798 814 6.753180 TGAGTAGAATATGCCTGTTCTCATC 58.247 40.000 4.32 5.43 34.92 2.92
866 888 2.104451 TGGCCATTCTGCAACACAATTT 59.896 40.909 0.00 0.00 0.00 1.82
871 893 5.615984 GCCATTCTGCAACACAATTTTGATG 60.616 40.000 0.00 0.00 0.00 3.07
873 895 6.370442 CCATTCTGCAACACAATTTTGATGAT 59.630 34.615 6.08 0.00 0.00 2.45
875 897 5.472148 TCTGCAACACAATTTTGATGATCC 58.528 37.500 6.08 0.00 0.00 3.36
876 898 5.010820 TCTGCAACACAATTTTGATGATCCA 59.989 36.000 6.08 0.00 0.00 3.41
880 902 6.148150 GCAACACAATTTTGATGATCCACATT 59.852 34.615 6.08 0.00 39.56 2.71
891 913 4.558226 TGATCCACATTACTCTGCTGTT 57.442 40.909 0.00 0.00 0.00 3.16
912 934 6.422333 TGTTGATCCTATGCATTTGGAAGTA 58.578 36.000 20.26 10.20 33.20 2.24
937 959 8.798859 ATTCAACTCTGCTGTATTTATCAAGT 57.201 30.769 0.00 0.00 0.00 3.16
940 962 7.981789 TCAACTCTGCTGTATTTATCAAGTAGG 59.018 37.037 0.00 0.00 0.00 3.18
942 964 5.611374 TCTGCTGTATTTATCAAGTAGGCC 58.389 41.667 0.00 0.00 0.00 5.19
943 965 5.130311 TCTGCTGTATTTATCAAGTAGGCCA 59.870 40.000 5.01 0.00 0.00 5.36
951 973 5.765576 TTATCAAGTAGGCCACCACTTTA 57.234 39.130 5.01 3.34 32.72 1.85
952 974 4.862641 ATCAAGTAGGCCACCACTTTAT 57.137 40.909 5.01 5.68 32.72 1.40
969 991 1.885049 TATCTGCTCCTTCTGGCCTT 58.115 50.000 3.32 0.00 0.00 4.35
1003 1035 3.953612 TGATGGGATTAACAACCTGATGC 59.046 43.478 0.00 0.00 0.00 3.91
1004 1036 3.448093 TGGGATTAACAACCTGATGCA 57.552 42.857 0.00 0.00 0.00 3.96
1005 1037 3.772387 TGGGATTAACAACCTGATGCAA 58.228 40.909 0.00 0.00 0.00 4.08
1025 1057 3.312736 ACCCATGGAAACTTCAGTTGT 57.687 42.857 15.22 0.00 38.44 3.32
1029 1061 3.068590 CCATGGAAACTTCAGTTGTTGCT 59.931 43.478 5.56 0.00 38.44 3.91
1039 1071 3.329386 TCAGTTGTTGCTCAGTGCTATC 58.671 45.455 0.00 0.00 43.37 2.08
1042 1074 2.391616 TGTTGCTCAGTGCTATCCTG 57.608 50.000 0.00 0.00 43.37 3.86
1055 1087 5.421693 AGTGCTATCCTGAGGATATGATCAC 59.578 44.000 20.80 21.61 42.88 3.06
1071 1103 6.865834 ATGATCACTAAAGAGAACAGAGGT 57.134 37.500 0.00 0.00 0.00 3.85
1085 1117 7.554476 AGAGAACAGAGGTATTATTTTGGAAGC 59.446 37.037 0.00 0.00 0.00 3.86
1086 1118 6.316390 AGAACAGAGGTATTATTTTGGAAGCG 59.684 38.462 0.00 0.00 0.00 4.68
1115 1147 1.905894 TGTCCCTACAGTTATGCAGCA 59.094 47.619 0.00 0.00 0.00 4.41
1116 1148 2.280628 GTCCCTACAGTTATGCAGCAC 58.719 52.381 0.00 0.00 0.00 4.40
1130 1162 1.470285 GCAGCACATTGTTGCCTATGG 60.470 52.381 3.81 0.00 46.79 2.74
1133 1165 1.135024 GCACATTGTTGCCTATGGTGG 60.135 52.381 0.00 0.00 36.42 4.61
1147 1179 0.686789 TGGTGGTGGTGATCAGTCAG 59.313 55.000 0.00 0.00 34.36 3.51
1149 1181 1.899814 GGTGGTGGTGATCAGTCAGTA 59.100 52.381 0.00 0.00 34.36 2.74
1155 1187 5.719563 TGGTGGTGATCAGTCAGTAATAGAA 59.280 40.000 0.00 0.00 34.36 2.10
1228 1260 1.888215 TGAGAAGCAAGCTGTTGAGG 58.112 50.000 0.00 0.00 35.46 3.86
1230 1262 2.075338 GAGAAGCAAGCTGTTGAGGAG 58.925 52.381 0.00 0.00 35.46 3.69
1231 1263 1.696336 AGAAGCAAGCTGTTGAGGAGA 59.304 47.619 0.00 0.00 35.46 3.71
1233 1265 0.036022 AGCAAGCTGTTGAGGAGACC 59.964 55.000 0.00 0.00 35.46 3.85
1235 1267 0.397941 CAAGCTGTTGAGGAGACCCA 59.602 55.000 0.00 0.00 35.46 4.51
1237 1269 0.908198 AGCTGTTGAGGAGACCCATC 59.092 55.000 0.00 0.00 33.88 3.51
1239 1271 1.280421 GCTGTTGAGGAGACCCATCTT 59.720 52.381 0.00 0.00 34.34 2.40
1251 1283 4.841422 AGACCCATCTTCAAGTTGATCAG 58.159 43.478 6.36 2.16 0.00 2.90
1273 1305 7.632861 TCAGAATTCTGGTGATTCCATTTCTA 58.367 34.615 30.33 6.89 46.12 2.10
1380 1412 5.786975 TCCTGATATTCCATTGGCAGATCTA 59.213 40.000 10.59 0.00 0.00 1.98
1404 1436 0.180642 GTAAGGAAGGGGCTAGCACC 59.819 60.000 29.67 29.67 40.57 5.01
1481 1513 9.762381 ACCTATTGAATGGGTGAACTTTTTATA 57.238 29.630 12.71 0.00 43.12 0.98
1556 1588 5.006386 GTCTCAAGTTTGGGAGATCATTGT 58.994 41.667 0.00 0.00 41.77 2.71
1587 1619 3.536570 GGAGACTAAGAAATGTCTGCCC 58.463 50.000 0.09 0.00 42.98 5.36
1604 1636 1.643310 CCCTTTGCCATCCCAGAAAA 58.357 50.000 0.00 0.00 0.00 2.29
1607 1639 3.430453 CCTTTGCCATCCCAGAAAACTA 58.570 45.455 0.00 0.00 0.00 2.24
1629 1661 5.048846 ACCCAGATTGTAACAGTGTTCTT 57.951 39.130 12.82 0.00 0.00 2.52
1633 1665 6.430451 CCAGATTGTAACAGTGTTCTTTGTC 58.570 40.000 12.82 6.07 0.00 3.18
1636 1668 6.823689 AGATTGTAACAGTGTTCTTTGTCTGT 59.176 34.615 12.82 0.00 41.93 3.41
1640 1672 5.551760 AACAGTGTTCTTTGTCTGTTGAG 57.448 39.130 1.64 0.00 45.38 3.02
1647 1679 5.763204 TGTTCTTTGTCTGTTGAGTATTCCC 59.237 40.000 0.00 0.00 0.00 3.97
1653 1685 2.838202 TCTGTTGAGTATTCCCCAGGAC 59.162 50.000 0.00 0.00 0.00 3.85
1656 1688 2.307686 GTTGAGTATTCCCCAGGACCAA 59.692 50.000 0.00 0.00 0.00 3.67
1677 1709 6.042437 ACCAAGAAAATTCTCCTTCTGCAAAT 59.958 34.615 0.00 0.00 36.28 2.32
1716 1748 0.392336 CTGCCTCCTCTACATCTGCC 59.608 60.000 0.00 0.00 0.00 4.85
1742 1774 5.072329 TGCATAAGAATAGGAAGAGGAAGGG 59.928 44.000 0.00 0.00 0.00 3.95
1806 1838 3.290948 TTACAACAACTGCAGAAGGGT 57.709 42.857 23.35 15.68 0.00 4.34
1851 1883 5.869753 ACAAAGAATGTCTAGCATGTCAC 57.130 39.130 0.00 0.00 37.96 3.67
1932 1964 6.763610 GCAAGGTTAATGCTCAGAATACTACT 59.236 38.462 0.00 0.00 40.64 2.57
1935 1967 8.079211 AGGTTAATGCTCAGAATACTACTGAA 57.921 34.615 0.00 0.00 42.58 3.02
1944 1976 9.062524 GCTCAGAATACTACTGAAGAGAAGATA 57.937 37.037 0.00 0.00 42.58 1.98
1976 2008 2.695147 CCAAGAAGGCAAAGACCAACTT 59.305 45.455 0.00 0.00 40.98 2.66
2029 2061 2.290960 GGTGGTAGCAAGTCCAAGGATT 60.291 50.000 0.00 0.00 35.38 3.01
2070 2102 5.652452 GGGCCACATCTTAGTTCTGTTTTAT 59.348 40.000 4.39 0.00 0.00 1.40
2080 2115 8.774586 TCTTAGTTCTGTTTTATCAAGCTTGTC 58.225 33.333 25.19 10.77 0.00 3.18
2085 2120 5.769662 TCTGTTTTATCAAGCTTGTCATGGT 59.230 36.000 25.19 0.00 0.00 3.55
2140 2175 4.996793 TGGTCTTTTGGATCTCCATCAAA 58.003 39.130 0.00 0.00 46.97 2.69
2146 2181 7.596621 GTCTTTTGGATCTCCATCAAAAACTTC 59.403 37.037 0.00 0.00 46.97 3.01
2150 2185 4.400567 GGATCTCCATCAAAAACTTCCAGG 59.599 45.833 0.00 0.00 35.64 4.45
2152 2187 3.140144 TCTCCATCAAAAACTTCCAGGGT 59.860 43.478 0.00 0.00 0.00 4.34
2171 2206 6.231211 CAGGGTAGTCAGTCTGTGTTATTTT 58.769 40.000 0.00 0.00 0.00 1.82
2175 2210 6.817140 GGTAGTCAGTCTGTGTTATTTTAGGG 59.183 42.308 0.00 0.00 0.00 3.53
2176 2211 5.246307 AGTCAGTCTGTGTTATTTTAGGGC 58.754 41.667 0.00 0.00 0.00 5.19
2177 2212 5.013183 AGTCAGTCTGTGTTATTTTAGGGCT 59.987 40.000 0.00 0.00 0.00 5.19
2178 2213 5.351740 GTCAGTCTGTGTTATTTTAGGGCTC 59.648 44.000 0.00 0.00 0.00 4.70
2179 2214 5.248477 TCAGTCTGTGTTATTTTAGGGCTCT 59.752 40.000 0.00 0.00 0.00 4.09
2188 2223 8.613482 GTGTTATTTTAGGGCTCTAAGACATTC 58.387 37.037 6.09 0.00 36.87 2.67
2201 2236 6.511416 TCTAAGACATTCTGCTTCTCTATGC 58.489 40.000 0.00 0.00 0.00 3.14
2203 2238 6.477053 AAGACATTCTGCTTCTCTATGCTA 57.523 37.500 0.00 0.00 0.00 3.49
2226 2264 8.178313 GCTATCTTTTGTATGAGTTTGTTCTCC 58.822 37.037 0.00 0.00 33.93 3.71
2236 2274 2.091885 AGTTTGTTCTCCTTTGGCCTGA 60.092 45.455 3.32 0.00 0.00 3.86
2256 2294 5.178996 CCTGATGTATCTCTGTTATGCTTGC 59.821 44.000 0.00 0.00 0.00 4.01
2261 2299 3.770263 TCTCTGTTATGCTTGCAATGC 57.230 42.857 0.00 6.77 37.54 3.56
2273 2311 3.861689 GCTTGCAATGCTCTAAAATGGTC 59.138 43.478 6.82 0.00 33.64 4.02
2311 2349 0.947244 GTTGGACCAGTTGCTCACAG 59.053 55.000 0.00 0.00 0.00 3.66
2315 2353 1.677217 GGACCAGTTGCTCACAGGATC 60.677 57.143 5.27 0.00 35.53 3.36
2317 2355 1.701847 ACCAGTTGCTCACAGGATCTT 59.298 47.619 5.27 0.00 35.53 2.40
2341 2379 6.718294 TCCAGGGGAAAAGTTTCTTCTATAC 58.282 40.000 3.92 0.00 37.35 1.47
2344 2382 7.337184 CCAGGGGAAAAGTTTCTTCTATACTTC 59.663 40.741 3.92 0.00 37.35 3.01
2363 2401 5.449553 ACTTCCATTCCAGTTCTGTTTCTT 58.550 37.500 0.00 0.00 0.00 2.52
2474 2512 7.298374 TCTAATAAGAATGAGGAGTCAGGCTA 58.702 38.462 0.00 0.00 35.66 3.93
2510 2548 6.549364 TGCCTTCAGGAAACAAAAAGAGAATA 59.451 34.615 0.00 0.00 37.39 1.75
2622 2660 4.529897 TCACTGCTTGGAATGATAGCATT 58.470 39.130 5.77 5.77 47.00 3.56
2637 2675 6.656902 TGATAGCATTTTCTCTGGTCAGATT 58.343 36.000 0.75 0.00 36.76 2.40
2670 2708 4.897509 TGCTTTCTCTCTCTCCATCAAA 57.102 40.909 0.00 0.00 0.00 2.69
2699 2737 7.765819 CACATGTAAACTCAATGGATCTGTCTA 59.234 37.037 0.00 0.00 0.00 2.59
2721 2759 9.167311 GTCTAGATTTTGACAAATGTCTATGGT 57.833 33.333 17.20 0.00 44.99 3.55
2804 2842 3.872511 TGCAATTGATTGGATGGTCAC 57.127 42.857 10.34 0.00 38.21 3.67
2856 2894 2.361085 ACAGGAATAGGGAAGGTGGT 57.639 50.000 0.00 0.00 0.00 4.16
2933 2971 4.019321 TGAAATCCCACTCAAAGGTAGGAG 60.019 45.833 0.00 0.00 31.21 3.69
2941 2979 3.908103 ACTCAAAGGTAGGAGCTTTACCA 59.092 43.478 22.91 7.96 43.27 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.286553 TGGGGTCCAAGTGAACAAAGT 59.713 47.619 0.00 0.00 29.57 2.66
1 2 1.681264 GTGGGGTCCAAGTGAACAAAG 59.319 52.381 0.00 0.00 34.18 2.77
2 3 1.286553 AGTGGGGTCCAAGTGAACAAA 59.713 47.619 0.00 0.00 34.18 2.83
3 4 0.923358 AGTGGGGTCCAAGTGAACAA 59.077 50.000 0.00 0.00 34.18 2.83
4 5 0.923358 AAGTGGGGTCCAAGTGAACA 59.077 50.000 0.00 0.00 34.18 3.18
5 6 2.882761 GTTAAGTGGGGTCCAAGTGAAC 59.117 50.000 0.00 0.00 34.18 3.18
6 7 2.510382 TGTTAAGTGGGGTCCAAGTGAA 59.490 45.455 0.00 0.00 34.18 3.18
7 8 2.105821 CTGTTAAGTGGGGTCCAAGTGA 59.894 50.000 0.00 0.00 34.18 3.41
8 9 2.158667 ACTGTTAAGTGGGGTCCAAGTG 60.159 50.000 0.00 0.00 34.18 3.16
9 10 2.132686 ACTGTTAAGTGGGGTCCAAGT 58.867 47.619 0.00 0.00 34.18 3.16
10 11 2.951229 ACTGTTAAGTGGGGTCCAAG 57.049 50.000 0.00 0.00 34.18 3.61
20 21 2.172717 AGGAACCACTGCACTGTTAAGT 59.827 45.455 0.00 0.00 36.98 2.24
21 22 2.851195 AGGAACCACTGCACTGTTAAG 58.149 47.619 0.00 0.00 0.00 1.85
22 23 4.041075 TCATAGGAACCACTGCACTGTTAA 59.959 41.667 0.00 0.00 0.00 2.01
23 24 3.580895 TCATAGGAACCACTGCACTGTTA 59.419 43.478 0.00 0.00 0.00 2.41
24 25 2.371841 TCATAGGAACCACTGCACTGTT 59.628 45.455 0.00 0.00 0.00 3.16
25 26 1.977854 TCATAGGAACCACTGCACTGT 59.022 47.619 0.00 0.00 0.00 3.55
26 27 2.027745 AGTCATAGGAACCACTGCACTG 60.028 50.000 0.00 0.00 0.00 3.66
27 28 2.234908 GAGTCATAGGAACCACTGCACT 59.765 50.000 0.00 0.00 0.00 4.40
28 29 2.028112 TGAGTCATAGGAACCACTGCAC 60.028 50.000 0.00 0.00 0.00 4.57
29 30 2.256306 TGAGTCATAGGAACCACTGCA 58.744 47.619 0.00 0.00 0.00 4.41
30 31 3.003480 GTTGAGTCATAGGAACCACTGC 58.997 50.000 0.00 0.00 0.00 4.40
31 32 4.271696 TGTTGAGTCATAGGAACCACTG 57.728 45.455 0.00 0.00 0.00 3.66
32 33 4.974645 TTGTTGAGTCATAGGAACCACT 57.025 40.909 0.00 0.00 0.00 4.00
33 34 5.305585 TCTTTGTTGAGTCATAGGAACCAC 58.694 41.667 0.00 0.00 0.00 4.16
34 35 5.560722 TCTTTGTTGAGTCATAGGAACCA 57.439 39.130 0.00 0.00 0.00 3.67
35 36 6.231211 TCTTCTTTGTTGAGTCATAGGAACC 58.769 40.000 0.00 0.00 0.00 3.62
36 37 7.730364 TTCTTCTTTGTTGAGTCATAGGAAC 57.270 36.000 0.00 0.00 0.00 3.62
37 38 8.746052 TTTTCTTCTTTGTTGAGTCATAGGAA 57.254 30.769 0.00 0.00 0.00 3.36
38 39 8.210946 TCTTTTCTTCTTTGTTGAGTCATAGGA 58.789 33.333 0.00 0.00 0.00 2.94
39 40 8.383318 TCTTTTCTTCTTTGTTGAGTCATAGG 57.617 34.615 0.00 0.00 0.00 2.57
42 43 8.522830 TGTTTCTTTTCTTCTTTGTTGAGTCAT 58.477 29.630 0.00 0.00 0.00 3.06
43 44 7.881142 TGTTTCTTTTCTTCTTTGTTGAGTCA 58.119 30.769 0.00 0.00 0.00 3.41
44 45 8.639428 GTTGTTTCTTTTCTTCTTTGTTGAGTC 58.361 33.333 0.00 0.00 0.00 3.36
45 46 8.141268 TGTTGTTTCTTTTCTTCTTTGTTGAGT 58.859 29.630 0.00 0.00 0.00 3.41
46 47 8.519492 TGTTGTTTCTTTTCTTCTTTGTTGAG 57.481 30.769 0.00 0.00 0.00 3.02
47 48 8.879342 TTGTTGTTTCTTTTCTTCTTTGTTGA 57.121 26.923 0.00 0.00 0.00 3.18
48 49 9.928236 TTTTGTTGTTTCTTTTCTTCTTTGTTG 57.072 25.926 0.00 0.00 0.00 3.33
49 50 9.929722 GTTTTGTTGTTTCTTTTCTTCTTTGTT 57.070 25.926 0.00 0.00 0.00 2.83
50 51 9.325198 AGTTTTGTTGTTTCTTTTCTTCTTTGT 57.675 25.926 0.00 0.00 0.00 2.83
62 63 8.601476 CGAAGACTTAGTAGTTTTGTTGTTTCT 58.399 33.333 0.00 0.00 33.84 2.52
63 64 7.372657 GCGAAGACTTAGTAGTTTTGTTGTTTC 59.627 37.037 0.00 0.00 33.84 2.78
64 65 7.184779 GCGAAGACTTAGTAGTTTTGTTGTTT 58.815 34.615 0.00 0.00 33.84 2.83
65 66 6.509039 CGCGAAGACTTAGTAGTTTTGTTGTT 60.509 38.462 0.00 0.00 33.84 2.83
66 67 5.051240 CGCGAAGACTTAGTAGTTTTGTTGT 60.051 40.000 0.00 0.00 33.84 3.32
67 68 5.363517 CGCGAAGACTTAGTAGTTTTGTTG 58.636 41.667 0.00 0.00 33.84 3.33
68 69 4.084693 GCGCGAAGACTTAGTAGTTTTGTT 60.085 41.667 12.10 0.00 33.84 2.83
69 70 3.427863 GCGCGAAGACTTAGTAGTTTTGT 59.572 43.478 12.10 0.00 33.84 2.83
70 71 3.673809 AGCGCGAAGACTTAGTAGTTTTG 59.326 43.478 12.10 0.00 33.84 2.44
71 72 3.910648 AGCGCGAAGACTTAGTAGTTTT 58.089 40.909 12.10 0.00 33.84 2.43
72 73 3.500014 GAGCGCGAAGACTTAGTAGTTT 58.500 45.455 12.10 0.00 33.84 2.66
73 74 2.159407 GGAGCGCGAAGACTTAGTAGTT 60.159 50.000 12.10 0.00 33.84 2.24
74 75 1.401199 GGAGCGCGAAGACTTAGTAGT 59.599 52.381 12.10 0.00 37.31 2.73
75 76 1.400846 TGGAGCGCGAAGACTTAGTAG 59.599 52.381 12.10 0.00 0.00 2.57
76 77 1.456296 TGGAGCGCGAAGACTTAGTA 58.544 50.000 12.10 0.00 0.00 1.82
77 78 0.818296 ATGGAGCGCGAAGACTTAGT 59.182 50.000 12.10 0.00 0.00 2.24
78 79 2.033550 ACTATGGAGCGCGAAGACTTAG 59.966 50.000 12.10 10.57 0.00 2.18
79 80 2.022195 ACTATGGAGCGCGAAGACTTA 58.978 47.619 12.10 0.00 0.00 2.24
80 81 0.818296 ACTATGGAGCGCGAAGACTT 59.182 50.000 12.10 0.00 0.00 3.01
81 82 0.382515 GACTATGGAGCGCGAAGACT 59.617 55.000 12.10 0.00 0.00 3.24
82 83 0.382515 AGACTATGGAGCGCGAAGAC 59.617 55.000 12.10 0.00 0.00 3.01
83 84 1.065701 GAAGACTATGGAGCGCGAAGA 59.934 52.381 12.10 0.00 0.00 2.87
84 85 1.202302 TGAAGACTATGGAGCGCGAAG 60.202 52.381 12.10 0.00 0.00 3.79
85 86 0.815095 TGAAGACTATGGAGCGCGAA 59.185 50.000 12.10 0.00 0.00 4.70
86 87 0.100682 GTGAAGACTATGGAGCGCGA 59.899 55.000 12.10 0.00 0.00 5.87
87 88 0.101399 AGTGAAGACTATGGAGCGCG 59.899 55.000 0.00 0.00 0.00 6.86
88 89 1.135139 TGAGTGAAGACTATGGAGCGC 59.865 52.381 0.00 0.00 30.16 5.92
89 90 3.510388 TTGAGTGAAGACTATGGAGCG 57.490 47.619 0.00 0.00 30.16 5.03
90 91 4.764172 ACATTGAGTGAAGACTATGGAGC 58.236 43.478 0.00 0.00 30.16 4.70
91 92 6.219417 AGACATTGAGTGAAGACTATGGAG 57.781 41.667 0.00 0.00 30.16 3.86
92 93 6.438741 AGAAGACATTGAGTGAAGACTATGGA 59.561 38.462 0.00 0.00 30.16 3.41
93 94 6.638610 AGAAGACATTGAGTGAAGACTATGG 58.361 40.000 0.00 0.00 30.16 2.74
94 95 9.814899 ATAAGAAGACATTGAGTGAAGACTATG 57.185 33.333 0.00 0.00 30.16 2.23
95 96 9.814899 CATAAGAAGACATTGAGTGAAGACTAT 57.185 33.333 0.00 0.00 30.16 2.12
96 97 8.807118 ACATAAGAAGACATTGAGTGAAGACTA 58.193 33.333 0.00 0.00 30.16 2.59
97 98 7.675062 ACATAAGAAGACATTGAGTGAAGACT 58.325 34.615 0.00 0.00 33.98 3.24
98 99 7.600375 TGACATAAGAAGACATTGAGTGAAGAC 59.400 37.037 0.00 0.00 0.00 3.01
99 100 7.670364 TGACATAAGAAGACATTGAGTGAAGA 58.330 34.615 0.00 0.00 0.00 2.87
100 101 7.895975 TGACATAAGAAGACATTGAGTGAAG 57.104 36.000 0.00 0.00 0.00 3.02
101 102 9.591792 CTATGACATAAGAAGACATTGAGTGAA 57.408 33.333 0.00 0.00 0.00 3.18
102 103 8.753133 ACTATGACATAAGAAGACATTGAGTGA 58.247 33.333 0.00 0.00 0.00 3.41
103 104 8.939201 ACTATGACATAAGAAGACATTGAGTG 57.061 34.615 0.00 0.00 0.00 3.51
104 105 8.976353 AGACTATGACATAAGAAGACATTGAGT 58.024 33.333 0.00 0.00 0.00 3.41
105 106 9.814899 AAGACTATGACATAAGAAGACATTGAG 57.185 33.333 0.00 0.00 0.00 3.02
106 107 9.809096 GAAGACTATGACATAAGAAGACATTGA 57.191 33.333 0.00 0.00 0.00 2.57
107 108 9.591792 TGAAGACTATGACATAAGAAGACATTG 57.408 33.333 0.00 0.00 0.00 2.82
108 109 9.814899 CTGAAGACTATGACATAAGAAGACATT 57.185 33.333 0.00 0.00 0.00 2.71
109 110 8.976353 ACTGAAGACTATGACATAAGAAGACAT 58.024 33.333 0.00 0.00 0.00 3.06
110 111 8.246871 CACTGAAGACTATGACATAAGAAGACA 58.753 37.037 0.00 0.00 0.00 3.41
111 112 8.247562 ACACTGAAGACTATGACATAAGAAGAC 58.752 37.037 0.00 0.00 0.00 3.01
112 113 8.246871 CACACTGAAGACTATGACATAAGAAGA 58.753 37.037 0.00 0.00 0.00 2.87
113 114 8.246871 TCACACTGAAGACTATGACATAAGAAG 58.753 37.037 0.00 0.00 0.00 2.85
114 115 8.122472 TCACACTGAAGACTATGACATAAGAA 57.878 34.615 0.00 0.00 0.00 2.52
115 116 7.703058 TCACACTGAAGACTATGACATAAGA 57.297 36.000 0.00 0.00 0.00 2.10
116 117 8.815189 CATTCACACTGAAGACTATGACATAAG 58.185 37.037 0.00 0.00 40.05 1.73
117 118 8.314021 ACATTCACACTGAAGACTATGACATAA 58.686 33.333 0.00 0.00 40.05 1.90
118 119 7.840931 ACATTCACACTGAAGACTATGACATA 58.159 34.615 0.00 0.00 40.05 2.29
119 120 6.705302 ACATTCACACTGAAGACTATGACAT 58.295 36.000 0.00 0.00 40.05 3.06
120 121 6.015095 AGACATTCACACTGAAGACTATGACA 60.015 38.462 0.00 0.00 40.05 3.58
121 122 6.393990 AGACATTCACACTGAAGACTATGAC 58.606 40.000 0.00 0.00 40.05 3.06
122 123 6.596309 AGACATTCACACTGAAGACTATGA 57.404 37.500 0.00 0.00 40.05 2.15
123 124 6.870439 TGAAGACATTCACACTGAAGACTATG 59.130 38.462 0.00 0.00 40.05 2.23
124 125 6.997655 TGAAGACATTCACACTGAAGACTAT 58.002 36.000 0.00 0.00 40.05 2.12
125 126 6.405278 TGAAGACATTCACACTGAAGACTA 57.595 37.500 0.00 0.00 40.05 2.59
126 127 5.282055 TGAAGACATTCACACTGAAGACT 57.718 39.130 0.00 0.00 40.05 3.24
137 138 2.365941 TGGTGGTACGTGAAGACATTCA 59.634 45.455 0.00 0.00 43.20 2.57
138 139 3.034721 TGGTGGTACGTGAAGACATTC 57.965 47.619 0.00 0.00 35.87 2.67
139 140 3.695830 ATGGTGGTACGTGAAGACATT 57.304 42.857 0.00 0.00 0.00 2.71
140 141 3.695830 AATGGTGGTACGTGAAGACAT 57.304 42.857 0.00 0.00 0.00 3.06
141 142 4.464951 AGATAATGGTGGTACGTGAAGACA 59.535 41.667 0.00 0.00 0.00 3.41
142 143 5.007385 AGATAATGGTGGTACGTGAAGAC 57.993 43.478 0.00 0.00 0.00 3.01
143 144 5.186215 TGAAGATAATGGTGGTACGTGAAGA 59.814 40.000 0.00 0.00 0.00 2.87
144 145 5.416083 TGAAGATAATGGTGGTACGTGAAG 58.584 41.667 0.00 0.00 0.00 3.02
145 146 5.408880 TGAAGATAATGGTGGTACGTGAA 57.591 39.130 0.00 0.00 0.00 3.18
146 147 5.408880 TTGAAGATAATGGTGGTACGTGA 57.591 39.130 0.00 0.00 0.00 4.35
147 148 5.584649 ACATTGAAGATAATGGTGGTACGTG 59.415 40.000 0.00 0.00 41.29 4.49
148 149 5.741011 ACATTGAAGATAATGGTGGTACGT 58.259 37.500 0.00 0.00 41.29 3.57
149 150 6.049149 AGACATTGAAGATAATGGTGGTACG 58.951 40.000 0.00 0.00 41.29 3.67
150 151 7.552687 TGAAGACATTGAAGATAATGGTGGTAC 59.447 37.037 0.00 0.00 41.29 3.34
151 152 7.629157 TGAAGACATTGAAGATAATGGTGGTA 58.371 34.615 0.00 0.00 41.29 3.25
152 153 6.484288 TGAAGACATTGAAGATAATGGTGGT 58.516 36.000 0.00 0.00 41.29 4.16
153 154 7.578310 ATGAAGACATTGAAGATAATGGTGG 57.422 36.000 0.00 0.00 41.29 4.61
165 166 9.320295 ACCCCTAAAAATTTATGAAGACATTGA 57.680 29.630 0.00 0.00 37.87 2.57
166 167 9.586435 GACCCCTAAAAATTTATGAAGACATTG 57.414 33.333 0.00 0.00 37.87 2.82
167 168 9.320295 TGACCCCTAAAAATTTATGAAGACATT 57.680 29.630 0.00 0.00 37.87 2.71
168 169 8.893563 TGACCCCTAAAAATTTATGAAGACAT 57.106 30.769 0.00 0.00 40.16 3.06
169 170 8.893563 ATGACCCCTAAAAATTTATGAAGACA 57.106 30.769 0.00 0.00 0.00 3.41
170 171 9.190317 AGATGACCCCTAAAAATTTATGAAGAC 57.810 33.333 0.00 0.00 0.00 3.01
171 172 9.768215 AAGATGACCCCTAAAAATTTATGAAGA 57.232 29.630 0.00 0.00 0.00 2.87
173 174 8.682710 CGAAGATGACCCCTAAAAATTTATGAA 58.317 33.333 0.00 0.00 0.00 2.57
174 175 8.050325 TCGAAGATGACCCCTAAAAATTTATGA 58.950 33.333 0.00 0.00 0.00 2.15
175 176 8.220755 TCGAAGATGACCCCTAAAAATTTATG 57.779 34.615 0.00 0.00 0.00 1.90
176 177 8.996651 ATCGAAGATGACCCCTAAAAATTTAT 57.003 30.769 0.00 0.00 45.12 1.40
177 178 9.555727 CTATCGAAGATGACCCCTAAAAATTTA 57.444 33.333 0.00 0.00 45.12 1.40
178 179 7.502561 CCTATCGAAGATGACCCCTAAAAATTT 59.497 37.037 0.00 0.00 45.12 1.82
179 180 6.998673 CCTATCGAAGATGACCCCTAAAAATT 59.001 38.462 0.00 0.00 45.12 1.82
180 181 6.101296 ACCTATCGAAGATGACCCCTAAAAAT 59.899 38.462 0.00 0.00 45.12 1.82
181 182 5.427481 ACCTATCGAAGATGACCCCTAAAAA 59.573 40.000 0.00 0.00 45.12 1.94
182 183 4.966805 ACCTATCGAAGATGACCCCTAAAA 59.033 41.667 0.00 0.00 45.12 1.52
183 184 4.553678 ACCTATCGAAGATGACCCCTAAA 58.446 43.478 0.00 0.00 45.12 1.85
184 185 4.194678 ACCTATCGAAGATGACCCCTAA 57.805 45.455 0.00 0.00 45.12 2.69
185 186 3.897657 ACCTATCGAAGATGACCCCTA 57.102 47.619 0.00 0.00 45.12 3.53
186 187 2.777459 ACCTATCGAAGATGACCCCT 57.223 50.000 0.00 0.00 45.12 4.79
187 188 4.502777 GGTTTACCTATCGAAGATGACCCC 60.503 50.000 0.00 0.00 45.12 4.95
188 189 4.629092 GGTTTACCTATCGAAGATGACCC 58.371 47.826 0.00 0.00 45.12 4.46
189 190 4.037208 TCGGTTTACCTATCGAAGATGACC 59.963 45.833 0.00 0.00 45.12 4.02
190 191 5.179045 TCGGTTTACCTATCGAAGATGAC 57.821 43.478 0.00 0.00 45.12 3.06
191 192 5.840243 TTCGGTTTACCTATCGAAGATGA 57.160 39.130 0.00 0.00 45.12 2.92
192 193 6.213677 TGATTCGGTTTACCTATCGAAGATG 58.786 40.000 0.00 0.00 45.12 2.90
193 194 6.401047 TGATTCGGTTTACCTATCGAAGAT 57.599 37.500 0.00 0.00 45.12 2.40
194 195 5.840243 TGATTCGGTTTACCTATCGAAGA 57.160 39.130 0.00 0.00 43.32 2.87
195 196 5.462398 CCTTGATTCGGTTTACCTATCGAAG 59.538 44.000 0.00 6.69 43.32 3.79
196 197 5.127519 TCCTTGATTCGGTTTACCTATCGAA 59.872 40.000 0.00 0.00 44.02 3.71
197 198 4.646040 TCCTTGATTCGGTTTACCTATCGA 59.354 41.667 0.00 0.00 31.41 3.59
198 199 4.940463 TCCTTGATTCGGTTTACCTATCG 58.060 43.478 0.00 0.00 31.41 2.92
199 200 5.298347 CCTCCTTGATTCGGTTTACCTATC 58.702 45.833 0.00 1.49 0.00 2.08
200 201 4.102681 CCCTCCTTGATTCGGTTTACCTAT 59.897 45.833 0.00 0.00 0.00 2.57
201 202 3.453353 CCCTCCTTGATTCGGTTTACCTA 59.547 47.826 0.00 0.00 0.00 3.08
202 203 2.238898 CCCTCCTTGATTCGGTTTACCT 59.761 50.000 0.00 0.00 0.00 3.08
203 204 2.237893 TCCCTCCTTGATTCGGTTTACC 59.762 50.000 0.00 0.00 0.00 2.85
204 205 3.055312 AGTCCCTCCTTGATTCGGTTTAC 60.055 47.826 0.00 0.00 0.00 2.01
205 206 3.178865 AGTCCCTCCTTGATTCGGTTTA 58.821 45.455 0.00 0.00 0.00 2.01
206 207 1.985895 AGTCCCTCCTTGATTCGGTTT 59.014 47.619 0.00 0.00 0.00 3.27
207 208 1.657804 AGTCCCTCCTTGATTCGGTT 58.342 50.000 0.00 0.00 0.00 4.44
208 209 2.544844 TAGTCCCTCCTTGATTCGGT 57.455 50.000 0.00 0.00 0.00 4.69
209 210 4.262506 GGTATTAGTCCCTCCTTGATTCGG 60.263 50.000 0.00 0.00 0.00 4.30
210 211 4.589374 AGGTATTAGTCCCTCCTTGATTCG 59.411 45.833 0.00 0.00 0.00 3.34
211 212 5.367060 ACAGGTATTAGTCCCTCCTTGATTC 59.633 44.000 0.00 0.00 0.00 2.52
212 213 5.131142 CACAGGTATTAGTCCCTCCTTGATT 59.869 44.000 0.00 0.00 0.00 2.57
213 214 4.656112 CACAGGTATTAGTCCCTCCTTGAT 59.344 45.833 0.00 0.00 0.00 2.57
214 215 4.030913 CACAGGTATTAGTCCCTCCTTGA 58.969 47.826 0.00 0.00 0.00 3.02
215 216 3.775316 ACACAGGTATTAGTCCCTCCTTG 59.225 47.826 0.00 0.00 0.00 3.61
216 217 4.076175 ACACAGGTATTAGTCCCTCCTT 57.924 45.455 0.00 0.00 0.00 3.36
217 218 3.778622 ACACAGGTATTAGTCCCTCCT 57.221 47.619 0.00 0.00 0.00 3.69
218 219 5.011840 GGATAACACAGGTATTAGTCCCTCC 59.988 48.000 0.00 0.00 0.00 4.30
219 220 5.839606 AGGATAACACAGGTATTAGTCCCTC 59.160 44.000 0.00 0.00 0.00 4.30
220 221 5.602978 CAGGATAACACAGGTATTAGTCCCT 59.397 44.000 0.00 0.00 0.00 4.20
221 222 5.742255 GCAGGATAACACAGGTATTAGTCCC 60.742 48.000 0.00 0.00 0.00 4.46
222 223 5.163343 TGCAGGATAACACAGGTATTAGTCC 60.163 44.000 0.00 0.00 0.00 3.85
223 224 5.914033 TGCAGGATAACACAGGTATTAGTC 58.086 41.667 0.00 0.00 0.00 2.59
224 225 5.950544 TGCAGGATAACACAGGTATTAGT 57.049 39.130 0.00 0.00 0.00 2.24
225 226 7.716998 AGAATTGCAGGATAACACAGGTATTAG 59.283 37.037 0.00 0.00 0.00 1.73
226 227 7.573710 AGAATTGCAGGATAACACAGGTATTA 58.426 34.615 0.00 0.00 0.00 0.98
227 228 6.426587 AGAATTGCAGGATAACACAGGTATT 58.573 36.000 0.00 0.00 0.00 1.89
228 229 6.006275 AGAATTGCAGGATAACACAGGTAT 57.994 37.500 0.00 0.00 0.00 2.73
229 230 5.045942 TGAGAATTGCAGGATAACACAGGTA 60.046 40.000 0.00 0.00 0.00 3.08
230 231 4.263462 TGAGAATTGCAGGATAACACAGGT 60.263 41.667 0.00 0.00 0.00 4.00
231 232 4.095483 GTGAGAATTGCAGGATAACACAGG 59.905 45.833 0.00 0.00 0.00 4.00
232 233 4.696877 TGTGAGAATTGCAGGATAACACAG 59.303 41.667 0.00 0.00 33.10 3.66
233 234 4.650734 TGTGAGAATTGCAGGATAACACA 58.349 39.130 0.00 0.00 34.24 3.72
234 235 5.627499 TTGTGAGAATTGCAGGATAACAC 57.373 39.130 0.00 0.00 0.00 3.32
235 236 5.534278 TGTTTGTGAGAATTGCAGGATAACA 59.466 36.000 0.00 0.00 0.00 2.41
236 237 5.858581 GTGTTTGTGAGAATTGCAGGATAAC 59.141 40.000 0.00 0.00 0.00 1.89
237 238 5.534278 TGTGTTTGTGAGAATTGCAGGATAA 59.466 36.000 0.00 0.00 0.00 1.75
238 239 5.069318 TGTGTTTGTGAGAATTGCAGGATA 58.931 37.500 0.00 0.00 0.00 2.59
239 240 3.890756 TGTGTTTGTGAGAATTGCAGGAT 59.109 39.130 0.00 0.00 0.00 3.24
240 241 3.286353 TGTGTTTGTGAGAATTGCAGGA 58.714 40.909 0.00 0.00 0.00 3.86
241 242 3.713858 TGTGTTTGTGAGAATTGCAGG 57.286 42.857 0.00 0.00 0.00 4.85
242 243 6.441274 ACTAATGTGTTTGTGAGAATTGCAG 58.559 36.000 0.00 0.00 0.00 4.41
243 244 6.389830 ACTAATGTGTTTGTGAGAATTGCA 57.610 33.333 0.00 0.00 0.00 4.08
244 245 5.858581 GGACTAATGTGTTTGTGAGAATTGC 59.141 40.000 0.00 0.00 0.00 3.56
245 246 6.207417 AGGGACTAATGTGTTTGTGAGAATTG 59.793 38.462 0.00 0.00 36.02 2.32
246 247 6.306987 AGGGACTAATGTGTTTGTGAGAATT 58.693 36.000 0.00 0.00 36.02 2.17
247 248 5.880901 AGGGACTAATGTGTTTGTGAGAAT 58.119 37.500 0.00 0.00 36.02 2.40
248 249 5.163248 TGAGGGACTAATGTGTTTGTGAGAA 60.163 40.000 0.00 0.00 41.55 2.87
249 250 4.346709 TGAGGGACTAATGTGTTTGTGAGA 59.653 41.667 0.00 0.00 41.55 3.27
250 251 4.641396 TGAGGGACTAATGTGTTTGTGAG 58.359 43.478 0.00 0.00 41.55 3.51
251 252 4.698201 TGAGGGACTAATGTGTTTGTGA 57.302 40.909 0.00 0.00 41.55 3.58
252 253 4.023193 GGTTGAGGGACTAATGTGTTTGTG 60.023 45.833 0.00 0.00 41.55 3.33
253 254 4.142038 GGTTGAGGGACTAATGTGTTTGT 58.858 43.478 0.00 0.00 41.55 2.83
254 255 4.023193 GTGGTTGAGGGACTAATGTGTTTG 60.023 45.833 0.00 0.00 41.55 2.93
255 256 4.142038 GTGGTTGAGGGACTAATGTGTTT 58.858 43.478 0.00 0.00 41.55 2.83
256 257 3.751518 GTGGTTGAGGGACTAATGTGTT 58.248 45.455 0.00 0.00 41.55 3.32
257 258 2.289444 CGTGGTTGAGGGACTAATGTGT 60.289 50.000 0.00 0.00 41.55 3.72
258 259 2.289444 ACGTGGTTGAGGGACTAATGTG 60.289 50.000 0.00 0.00 41.55 3.21
259 260 1.975680 ACGTGGTTGAGGGACTAATGT 59.024 47.619 0.00 0.00 41.55 2.71
260 261 2.762535 ACGTGGTTGAGGGACTAATG 57.237 50.000 0.00 0.00 41.55 1.90
261 262 3.181448 ACAAACGTGGTTGAGGGACTAAT 60.181 43.478 4.36 0.00 41.55 1.73
262 263 2.171027 ACAAACGTGGTTGAGGGACTAA 59.829 45.455 4.36 0.00 41.55 2.24
263 264 1.764134 ACAAACGTGGTTGAGGGACTA 59.236 47.619 4.36 0.00 41.55 2.59
264 265 4.989435 CGACAAACGTGGTTGAGGGACT 62.989 54.545 4.36 0.00 38.39 3.85
265 266 0.942252 GACAAACGTGGTTGAGGGAC 59.058 55.000 4.36 0.00 32.59 4.46
266 267 0.531090 CGACAAACGTGGTTGAGGGA 60.531 55.000 4.36 0.00 37.22 4.20
267 268 1.938861 CGACAAACGTGGTTGAGGG 59.061 57.895 4.36 0.00 37.22 4.30
278 279 5.209977 GGTTTTGGAGTATTGACGACAAAC 58.790 41.667 4.09 4.89 39.54 2.93
279 280 4.882427 TGGTTTTGGAGTATTGACGACAAA 59.118 37.500 4.09 0.00 39.54 2.83
280 281 4.452825 TGGTTTTGGAGTATTGACGACAA 58.547 39.130 2.18 2.18 40.42 3.18
281 282 4.074627 TGGTTTTGGAGTATTGACGACA 57.925 40.909 0.00 0.00 0.00 4.35
282 283 5.008316 AGTTTGGTTTTGGAGTATTGACGAC 59.992 40.000 0.00 0.00 0.00 4.34
283 284 5.127491 AGTTTGGTTTTGGAGTATTGACGA 58.873 37.500 0.00 0.00 0.00 4.20
284 285 5.432885 AGTTTGGTTTTGGAGTATTGACG 57.567 39.130 0.00 0.00 0.00 4.35
285 286 6.072119 CCCTAGTTTGGTTTTGGAGTATTGAC 60.072 42.308 0.00 0.00 0.00 3.18
286 287 6.007703 CCCTAGTTTGGTTTTGGAGTATTGA 58.992 40.000 0.00 0.00 0.00 2.57
287 288 5.185056 CCCCTAGTTTGGTTTTGGAGTATTG 59.815 44.000 0.00 0.00 0.00 1.90
288 289 5.162914 ACCCCTAGTTTGGTTTTGGAGTATT 60.163 40.000 0.00 0.00 0.00 1.89
289 290 4.355889 ACCCCTAGTTTGGTTTTGGAGTAT 59.644 41.667 0.00 0.00 0.00 2.12
290 291 3.723154 ACCCCTAGTTTGGTTTTGGAGTA 59.277 43.478 0.00 0.00 0.00 2.59
291 292 2.516702 ACCCCTAGTTTGGTTTTGGAGT 59.483 45.455 0.00 0.00 0.00 3.85
292 293 2.890945 CACCCCTAGTTTGGTTTTGGAG 59.109 50.000 0.00 0.00 30.70 3.86
293 294 2.425102 CCACCCCTAGTTTGGTTTTGGA 60.425 50.000 0.00 0.00 30.70 3.53
294 295 1.967779 CCACCCCTAGTTTGGTTTTGG 59.032 52.381 0.00 0.00 30.70 3.28
295 296 1.343142 GCCACCCCTAGTTTGGTTTTG 59.657 52.381 4.04 0.00 30.70 2.44
296 297 1.062810 TGCCACCCCTAGTTTGGTTTT 60.063 47.619 4.04 0.00 30.70 2.43
297 298 0.558712 TGCCACCCCTAGTTTGGTTT 59.441 50.000 4.04 0.00 30.70 3.27
298 299 0.178973 GTGCCACCCCTAGTTTGGTT 60.179 55.000 4.04 0.00 30.70 3.67
299 300 1.065997 AGTGCCACCCCTAGTTTGGT 61.066 55.000 0.00 0.00 34.40 3.67
300 301 0.988832 TAGTGCCACCCCTAGTTTGG 59.011 55.000 0.00 0.00 0.00 3.28
301 302 1.906574 TCTAGTGCCACCCCTAGTTTG 59.093 52.381 0.00 0.00 33.81 2.93
302 303 2.337359 TCTAGTGCCACCCCTAGTTT 57.663 50.000 0.00 0.00 33.81 2.66
303 304 2.119495 CATCTAGTGCCACCCCTAGTT 58.881 52.381 0.00 0.00 33.81 2.24
304 305 1.794714 CATCTAGTGCCACCCCTAGT 58.205 55.000 0.00 0.00 33.81 2.57
315 316 2.501723 AGGGGTGTAAGTGCATCTAGTG 59.498 50.000 0.00 0.00 0.00 2.74
316 317 2.834113 AGGGGTGTAAGTGCATCTAGT 58.166 47.619 0.00 0.00 0.00 2.57
317 318 3.914426 AAGGGGTGTAAGTGCATCTAG 57.086 47.619 0.00 0.00 0.00 2.43
318 319 4.202524 ACAAAAGGGGTGTAAGTGCATCTA 60.203 41.667 0.00 0.00 0.00 1.98
319 320 3.157087 CAAAAGGGGTGTAAGTGCATCT 58.843 45.455 0.00 0.00 0.00 2.90
320 321 2.890945 ACAAAAGGGGTGTAAGTGCATC 59.109 45.455 0.00 0.00 0.00 3.91
321 322 2.957474 ACAAAAGGGGTGTAAGTGCAT 58.043 42.857 0.00 0.00 0.00 3.96
322 323 2.445682 ACAAAAGGGGTGTAAGTGCA 57.554 45.000 0.00 0.00 0.00 4.57
323 324 4.500205 GGTTAACAAAAGGGGTGTAAGTGC 60.500 45.833 8.10 0.00 0.00 4.40
324 325 4.038282 GGGTTAACAAAAGGGGTGTAAGTG 59.962 45.833 8.10 0.00 0.00 3.16
325 326 4.079038 AGGGTTAACAAAAGGGGTGTAAGT 60.079 41.667 8.10 0.00 0.00 2.24
326 327 4.476297 AGGGTTAACAAAAGGGGTGTAAG 58.524 43.478 8.10 0.00 0.00 2.34
327 328 4.079327 TGAGGGTTAACAAAAGGGGTGTAA 60.079 41.667 8.10 0.00 0.00 2.41
328 329 3.462579 TGAGGGTTAACAAAAGGGGTGTA 59.537 43.478 8.10 0.00 0.00 2.90
329 330 2.245287 TGAGGGTTAACAAAAGGGGTGT 59.755 45.455 8.10 0.00 0.00 4.16
330 331 2.626266 GTGAGGGTTAACAAAAGGGGTG 59.374 50.000 8.10 0.00 0.00 4.61
331 332 2.425247 GGTGAGGGTTAACAAAAGGGGT 60.425 50.000 8.10 0.00 0.00 4.95
341 342 1.822425 TGGAACAGGGTGAGGGTTAA 58.178 50.000 0.00 0.00 0.00 2.01
357 358 2.037901 TGGAAGTTTGCTTGCATTGGA 58.962 42.857 0.00 0.00 45.89 3.53
369 370 5.534207 TGTGCTGATTTTGATGGAAGTTT 57.466 34.783 0.00 0.00 0.00 2.66
381 382 5.012354 ACCCAGAAAATGATTGTGCTGATTT 59.988 36.000 0.00 0.00 0.00 2.17
384 385 3.499338 ACCCAGAAAATGATTGTGCTGA 58.501 40.909 0.00 0.00 0.00 4.26
414 415 5.008331 ACATTGTTCTCTTGCTCATGATGT 58.992 37.500 0.00 0.00 0.00 3.06
447 448 3.204526 CTGGAGATTCAGATCAGGTTGC 58.795 50.000 0.00 0.00 36.93 4.17
465 466 6.406692 TCTACTAAAATAGGTGCTAGCTGG 57.593 41.667 17.23 0.00 0.00 4.85
471 472 8.540388 TCATTGTCTTCTACTAAAATAGGTGCT 58.460 33.333 0.00 0.00 0.00 4.40
479 480 8.314751 CCTCTTCCTCATTGTCTTCTACTAAAA 58.685 37.037 0.00 0.00 0.00 1.52
481 482 7.182760 TCCTCTTCCTCATTGTCTTCTACTAA 58.817 38.462 0.00 0.00 0.00 2.24
483 484 5.584913 TCCTCTTCCTCATTGTCTTCTACT 58.415 41.667 0.00 0.00 0.00 2.57
485 486 6.439487 AGATCCTCTTCCTCATTGTCTTCTA 58.561 40.000 0.00 0.00 0.00 2.10
489 490 6.024563 TCTAGATCCTCTTCCTCATTGTCT 57.975 41.667 0.00 0.00 0.00 3.41
492 493 6.427547 GCATTTCTAGATCCTCTTCCTCATTG 59.572 42.308 0.00 0.00 0.00 2.82
561 571 2.306805 ACCAGCATGAAGTTCCTGATCA 59.693 45.455 11.84 0.00 39.69 2.92
672 688 2.854253 AGGTGGCTCCTGAGAAACA 58.146 52.632 7.43 0.00 46.19 2.83
701 717 2.627515 AGCAGAAGCAGTTGTCTCAA 57.372 45.000 0.00 0.00 45.49 3.02
709 725 0.394899 GGCCCATTAGCAGAAGCAGT 60.395 55.000 0.00 0.00 45.49 4.40
739 755 6.553100 ACCACCAAATTCAAATCAGGTAGAAA 59.447 34.615 0.00 0.00 0.00 2.52
741 757 5.640147 ACCACCAAATTCAAATCAGGTAGA 58.360 37.500 0.00 0.00 0.00 2.59
744 760 4.202346 CCAACCACCAAATTCAAATCAGGT 60.202 41.667 0.00 0.00 0.00 4.00
757 773 1.152567 CAGAAGGCCCAACCACCAA 60.153 57.895 0.00 0.00 43.14 3.67
772 788 5.893824 TGAGAACAGGCATATTCTACTCAGA 59.106 40.000 0.00 0.00 35.29 3.27
774 790 6.324770 TGATGAGAACAGGCATATTCTACTCA 59.675 38.462 0.00 0.00 35.29 3.41
778 794 6.106648 CCTGATGAGAACAGGCATATTCTA 57.893 41.667 0.00 0.00 46.30 2.10
804 820 2.818921 ACAGGCCCATTTGCTTCATAA 58.181 42.857 0.00 0.00 0.00 1.90
805 827 2.530460 ACAGGCCCATTTGCTTCATA 57.470 45.000 0.00 0.00 0.00 2.15
813 835 4.651045 GGATCTTCATAAACAGGCCCATTT 59.349 41.667 0.00 2.59 0.00 2.32
866 888 5.121105 CAGCAGAGTAATGTGGATCATCAA 58.879 41.667 0.00 0.00 35.48 2.57
871 893 4.507710 TCAACAGCAGAGTAATGTGGATC 58.492 43.478 0.00 0.00 0.00 3.36
873 895 4.507710 GATCAACAGCAGAGTAATGTGGA 58.492 43.478 0.00 0.00 31.67 4.02
875 897 4.511527 AGGATCAACAGCAGAGTAATGTG 58.488 43.478 0.00 0.00 0.00 3.21
876 898 4.833478 AGGATCAACAGCAGAGTAATGT 57.167 40.909 0.00 0.00 0.00 2.71
880 902 3.706086 TGCATAGGATCAACAGCAGAGTA 59.294 43.478 0.00 0.00 0.00 2.59
891 913 7.289310 TGAATACTTCCAAATGCATAGGATCA 58.711 34.615 18.44 15.59 0.00 2.92
912 934 8.798859 ACTTGATAAATACAGCAGAGTTGAAT 57.201 30.769 0.00 0.00 0.00 2.57
927 949 4.862641 AGTGGTGGCCTACTTGATAAAT 57.137 40.909 3.32 0.00 0.00 1.40
928 950 4.650972 AAGTGGTGGCCTACTTGATAAA 57.349 40.909 16.36 0.00 35.91 1.40
937 959 2.170607 GAGCAGATAAAGTGGTGGCCTA 59.829 50.000 3.32 0.00 0.00 3.93
940 962 1.065126 AGGAGCAGATAAAGTGGTGGC 60.065 52.381 0.00 0.00 0.00 5.01
942 964 3.937706 CAGAAGGAGCAGATAAAGTGGTG 59.062 47.826 0.00 0.00 0.00 4.17
943 965 3.054802 CCAGAAGGAGCAGATAAAGTGGT 60.055 47.826 0.00 0.00 36.89 4.16
951 973 0.255318 CAAGGCCAGAAGGAGCAGAT 59.745 55.000 5.01 0.00 36.89 2.90
952 974 1.681666 CAAGGCCAGAAGGAGCAGA 59.318 57.895 5.01 0.00 36.89 4.26
1003 1035 3.384467 ACAACTGAAGTTTCCATGGGTTG 59.616 43.478 13.02 16.73 35.83 3.77
1004 1036 3.642141 ACAACTGAAGTTTCCATGGGTT 58.358 40.909 13.02 2.21 35.83 4.11
1005 1037 3.312736 ACAACTGAAGTTTCCATGGGT 57.687 42.857 13.02 0.00 35.83 4.51
1029 1061 5.003096 TCATATCCTCAGGATAGCACTGA 57.997 43.478 18.67 13.87 46.25 3.41
1039 1071 7.773489 TCTCTTTAGTGATCATATCCTCAGG 57.227 40.000 0.00 0.00 0.00 3.86
1042 1074 8.855110 TCTGTTCTCTTTAGTGATCATATCCTC 58.145 37.037 0.00 0.00 0.00 3.71
1044 1076 8.087750 CCTCTGTTCTCTTTAGTGATCATATCC 58.912 40.741 0.00 0.00 0.00 2.59
1071 1103 7.604927 ACAGTACTGTTCGCTTCCAAAATAATA 59.395 33.333 22.95 0.00 41.83 0.98
1085 1117 3.489180 CTGTAGGGACAGTACTGTTCG 57.511 52.381 28.49 10.53 46.88 3.95
1115 1147 2.170166 CACCACCATAGGCAACAATGT 58.830 47.619 0.00 0.00 41.41 2.71
1116 1148 1.477700 CCACCACCATAGGCAACAATG 59.522 52.381 0.00 0.00 41.41 2.82
1126 1158 2.501316 CTGACTGATCACCACCACCATA 59.499 50.000 0.00 0.00 0.00 2.74
1127 1159 1.280133 CTGACTGATCACCACCACCAT 59.720 52.381 0.00 0.00 0.00 3.55
1130 1162 3.678056 TTACTGACTGATCACCACCAC 57.322 47.619 0.00 0.00 0.00 4.16
1133 1165 6.043411 GGTTCTATTACTGACTGATCACCAC 58.957 44.000 0.00 0.00 0.00 4.16
1147 1179 6.831976 AGGGATCACTGATTGGTTCTATTAC 58.168 40.000 0.00 0.00 0.00 1.89
1149 1181 5.669447 AGAGGGATCACTGATTGGTTCTATT 59.331 40.000 0.00 0.00 0.00 1.73
1155 1187 2.122768 GGAGAGGGATCACTGATTGGT 58.877 52.381 0.00 0.00 0.00 3.67
1208 1240 2.158769 TCCTCAACAGCTTGCTTCTCAA 60.159 45.455 0.00 0.00 0.00 3.02
1223 1255 3.251484 ACTTGAAGATGGGTCTCCTCAA 58.749 45.455 0.00 0.00 32.83 3.02
1228 1260 4.836825 TGATCAACTTGAAGATGGGTCTC 58.163 43.478 0.00 0.00 32.15 3.36
1230 1262 4.836825 TCTGATCAACTTGAAGATGGGTC 58.163 43.478 0.00 0.88 0.00 4.46
1231 1263 4.916041 TCTGATCAACTTGAAGATGGGT 57.084 40.909 0.00 0.00 0.00 4.51
1233 1265 7.415318 CCAGAATTCTGATCAACTTGAAGATGG 60.415 40.741 32.49 10.04 46.59 3.51
1235 1267 7.120873 CACCAGAATTCTGATCAACTTGAAGAT 59.879 37.037 32.49 3.90 46.59 2.40
1237 1269 6.429078 TCACCAGAATTCTGATCAACTTGAAG 59.571 38.462 32.49 15.55 46.59 3.02
1239 1271 5.868454 TCACCAGAATTCTGATCAACTTGA 58.132 37.500 32.49 19.10 46.59 3.02
1273 1305 2.839228 ACCAGGAGGAGCAGAAGTATT 58.161 47.619 0.00 0.00 38.69 1.89
1380 1412 2.197465 CTAGCCCCTTCCTTACCAAGT 58.803 52.381 0.00 0.00 0.00 3.16
1404 1436 1.276138 GGGGCAAAATGAGTTTCCCAG 59.724 52.381 12.49 0.00 37.87 4.45
1422 1454 3.826157 TGTCCTTGCTATTCACTTTTGGG 59.174 43.478 0.00 0.00 0.00 4.12
1481 1513 6.652205 TGTTAGGGGAAAGGAAAGATACAT 57.348 37.500 0.00 0.00 0.00 2.29
1587 1619 3.193479 GGTAGTTTTCTGGGATGGCAAAG 59.807 47.826 0.00 0.00 0.00 2.77
1604 1636 5.307196 AGAACACTGTTACAATCTGGGTAGT 59.693 40.000 0.00 0.00 0.00 2.73
1607 1639 4.706842 AGAACACTGTTACAATCTGGGT 57.293 40.909 0.00 0.00 0.00 4.51
1629 1661 3.009033 CCTGGGGAATACTCAACAGACAA 59.991 47.826 0.00 0.00 31.81 3.18
1633 1665 2.092914 GGTCCTGGGGAATACTCAACAG 60.093 54.545 0.00 0.00 31.38 3.16
1636 1668 2.352561 TGGTCCTGGGGAATACTCAA 57.647 50.000 0.00 0.00 31.38 3.02
1640 1672 3.732048 TTTCTTGGTCCTGGGGAATAC 57.268 47.619 0.00 0.00 31.38 1.89
1647 1679 4.039603 AGGAGAATTTTCTTGGTCCTGG 57.960 45.455 0.00 0.00 37.73 4.45
1653 1685 5.458041 TTGCAGAAGGAGAATTTTCTTGG 57.542 39.130 0.00 0.00 37.73 3.61
1656 1688 5.776716 TCCATTTGCAGAAGGAGAATTTTCT 59.223 36.000 0.00 0.00 41.00 2.52
1677 1709 4.564406 GCAGAAAGTTCCTGAGAATCTCCA 60.564 45.833 7.91 0.00 33.67 3.86
1716 1748 5.815233 TCCTCTTCCTATTCTTATGCAGG 57.185 43.478 0.00 0.00 0.00 4.85
1742 1774 2.677875 CCACCAGAGGGCCTTTGC 60.678 66.667 18.31 0.00 37.90 3.68
1851 1883 2.507471 AGGAATAGAAGGTGGCAAGGAG 59.493 50.000 0.00 0.00 0.00 3.69
1914 1946 8.753497 TCTCTTCAGTAGTATTCTGAGCATTA 57.247 34.615 0.00 0.00 41.87 1.90
1932 1964 5.280368 GGGGATGCATGATATCTTCTCTTCA 60.280 44.000 2.46 0.00 0.00 3.02
1935 1967 4.173594 TGGGGATGCATGATATCTTCTCT 58.826 43.478 2.46 0.00 0.00 3.10
1944 1976 1.756690 GCCTTCTTGGGGATGCATGAT 60.757 52.381 2.46 0.00 36.00 2.45
1947 1979 0.041535 TTGCCTTCTTGGGGATGCAT 59.958 50.000 0.00 0.00 33.92 3.96
1976 2008 5.329399 TCAAATTGCCTTCCTTAGCCTTAA 58.671 37.500 0.00 0.00 0.00 1.85
2029 2061 2.442413 GCCCTATTACACCAAGTTGCA 58.558 47.619 0.00 0.00 0.00 4.08
2070 2102 3.489355 ACATGAACCATGACAAGCTTGA 58.511 40.909 32.50 12.08 43.81 3.02
2106 2141 6.152638 TCCAAAAGACCATAAGGGAAAGAT 57.847 37.500 0.00 0.00 41.15 2.40
2140 2175 3.325135 CAGACTGACTACCCTGGAAGTTT 59.675 47.826 0.00 0.00 0.00 2.66
2146 2181 1.633774 ACACAGACTGACTACCCTGG 58.366 55.000 10.08 0.00 0.00 4.45
2150 2185 6.817140 CCCTAAAATAACACAGACTGACTACC 59.183 42.308 10.08 0.00 0.00 3.18
2152 2187 6.212791 AGCCCTAAAATAACACAGACTGACTA 59.787 38.462 10.08 0.00 0.00 2.59
2171 2206 3.647636 AGCAGAATGTCTTAGAGCCCTA 58.352 45.455 0.00 0.00 39.31 3.53
2175 2210 5.009854 AGAGAAGCAGAATGTCTTAGAGC 57.990 43.478 0.00 0.00 39.31 4.09
2176 2211 6.642131 GCATAGAGAAGCAGAATGTCTTAGAG 59.358 42.308 0.00 0.00 39.31 2.43
2177 2212 6.323482 AGCATAGAGAAGCAGAATGTCTTAGA 59.677 38.462 0.00 0.00 39.31 2.10
2178 2213 6.514947 AGCATAGAGAAGCAGAATGTCTTAG 58.485 40.000 0.00 0.00 39.31 2.18
2179 2214 6.477053 AGCATAGAGAAGCAGAATGTCTTA 57.523 37.500 0.00 0.00 39.31 2.10
2188 2223 8.710551 CATACAAAAGATAGCATAGAGAAGCAG 58.289 37.037 0.00 0.00 0.00 4.24
2201 2236 9.442047 AGGAGAACAAACTCATACAAAAGATAG 57.558 33.333 0.00 0.00 38.51 2.08
2203 2238 8.697507 AAGGAGAACAAACTCATACAAAAGAT 57.302 30.769 0.00 0.00 38.51 2.40
2226 2264 4.148128 ACAGAGATACATCAGGCCAAAG 57.852 45.455 5.01 0.00 0.00 2.77
2236 2274 6.514541 GCATTGCAAGCATAACAGAGATACAT 60.515 38.462 4.94 0.00 0.00 2.29
2256 2294 9.079833 CATAACAAAGACCATTTTAGAGCATTG 57.920 33.333 0.00 0.00 0.00 2.82
2273 2311 7.860872 GGTCCAACTGACTTTAACATAACAAAG 59.139 37.037 0.00 0.00 43.89 2.77
2311 2349 3.458044 AACTTTTCCCCTGGAAGATCC 57.542 47.619 0.00 0.00 43.06 3.36
2315 2353 4.474394 AGAAGAAACTTTTCCCCTGGAAG 58.526 43.478 0.00 0.00 43.06 3.46
2317 2355 5.860648 ATAGAAGAAACTTTTCCCCTGGA 57.139 39.130 0.00 0.00 37.92 3.86
2341 2379 5.532406 TGAAGAAACAGAACTGGAATGGAAG 59.468 40.000 6.76 0.00 34.19 3.46
2344 2382 5.772825 TTGAAGAAACAGAACTGGAATGG 57.227 39.130 6.76 0.00 34.19 3.16
2363 2401 5.164620 TCTAGCCATGATCAACAGTTTGA 57.835 39.130 0.00 0.00 45.93 2.69
2459 2497 3.652055 ACAGAATAGCCTGACTCCTCAT 58.348 45.455 0.00 0.00 37.59 2.90
2474 2512 2.373169 TCCTGAAGGCACAGAACAGAAT 59.627 45.455 12.09 0.00 39.94 2.40
2510 2548 7.515514 AGTTTCTGAGGTAGGATGGATCAATAT 59.484 37.037 0.00 0.00 0.00 1.28
2622 2660 3.261897 GGTGGAGAATCTGACCAGAGAAA 59.738 47.826 5.90 0.00 41.33 2.52
2637 2675 4.718774 AGAGAGAAAGCATTATGGTGGAGA 59.281 41.667 0.00 0.00 0.00 3.71
2670 2708 7.613022 ACAGATCCATTGAGTTTACATGTGAAT 59.387 33.333 9.11 0.00 0.00 2.57
2721 2759 3.657398 ATGTCCTCAATGATGCAAGGA 57.343 42.857 0.00 0.00 0.00 3.36
2771 2809 3.433343 TCAATTGCATCATCAACCTGGT 58.567 40.909 0.00 0.00 0.00 4.00
2804 2842 9.057089 GGTACCTGATGTAATTAAAATCTCCAG 57.943 37.037 4.06 0.00 0.00 3.86
2933 2971 1.135286 GCATGTTGCTCCTGGTAAAGC 60.135 52.381 0.00 0.00 40.96 3.51
2941 2979 1.035932 GCATCCTGCATGTTGCTCCT 61.036 55.000 15.31 0.00 45.31 3.69
2967 3005 1.066573 CACCAGTCCAGCTTCTCGAAT 60.067 52.381 0.00 0.00 0.00 3.34
2968 3006 0.318441 CACCAGTCCAGCTTCTCGAA 59.682 55.000 0.00 0.00 0.00 3.71
2970 3008 0.034059 AACACCAGTCCAGCTTCTCG 59.966 55.000 0.00 0.00 0.00 4.04
2994 3032 2.091994 AGAAAGGGCCCATGATTCAGAG 60.092 50.000 27.56 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.