Multiple sequence alignment - TraesCS2B01G115700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G115700 chr2B 100.000 3363 0 0 1 3363 79246073 79249435 0.000000e+00 6211.0
1 TraesCS2B01G115700 chr2B 93.892 573 21 8 11 574 79310559 79309992 0.000000e+00 852.0
2 TraesCS2B01G115700 chr2B 84.156 486 19 8 960 1445 79309440 79309013 5.190000e-113 418.0
3 TraesCS2B01G115700 chr2B 93.462 260 8 6 619 869 79309694 79309435 8.810000e-101 377.0
4 TraesCS2B01G115700 chr2B 91.954 87 5 1 2717 2803 481164327 481164411 1.640000e-23 121.0
5 TraesCS2B01G115700 chr2A 89.756 2792 136 56 14 2733 52394440 52391727 0.000000e+00 3434.0
6 TraesCS2B01G115700 chr2A 87.778 540 39 10 79 606 52271561 52272085 1.030000e-169 606.0
7 TraesCS2B01G115700 chr2A 90.221 317 24 5 969 1281 52272475 52272788 1.120000e-109 407.0
8 TraesCS2B01G115700 chr2A 90.000 270 25 2 2646 2914 52390818 52390550 6.910000e-92 348.0
9 TraesCS2B01G115700 chr2A 90.323 217 20 1 2803 3018 52391727 52391511 1.980000e-72 283.0
10 TraesCS2B01G115700 chr2A 91.011 178 15 1 2117 2294 52413059 52413235 4.340000e-59 239.0
11 TraesCS2B01G115700 chr2A 95.062 81 4 0 2938 3018 52302951 52302871 9.790000e-26 128.0
12 TraesCS2B01G115700 chr2D 88.535 2137 91 66 1 2091 50991017 50988989 0.000000e+00 2447.0
13 TraesCS2B01G115700 chr2D 86.119 742 39 36 1 726 50954333 50955026 0.000000e+00 741.0
14 TraesCS2B01G115700 chr2D 90.354 508 21 7 842 1343 50967677 50968162 2.830000e-180 641.0
15 TraesCS2B01G115700 chr2D 86.591 619 26 14 2131 2721 50988981 50988392 6.120000e-177 630.0
16 TraesCS2B01G115700 chr2D 84.565 460 24 17 990 1445 50955026 50955442 2.410000e-111 412.0
17 TraesCS2B01G115700 chr2D 87.349 332 14 14 424 739 50967298 50967617 4.130000e-94 355.0
18 TraesCS2B01G115700 chr2D 88.846 260 15 6 11 269 50966786 50967032 1.170000e-79 307.0
19 TraesCS2B01G115700 chr2D 89.888 178 17 1 2117 2294 51002346 51002522 9.390000e-56 228.0
20 TraesCS2B01G115700 chr2D 87.919 149 4 10 349 495 50967162 50967298 2.680000e-36 163.0
21 TraesCS2B01G115700 chr2D 92.727 55 3 1 1392 1445 50968160 50968214 1.000000e-10 78.7
22 TraesCS2B01G115700 chr4A 86.087 345 28 6 3029 3363 711230499 711230833 1.480000e-93 353.0
23 TraesCS2B01G115700 chr4A 85.714 343 30 4 3031 3363 704310961 704310628 8.930000e-91 344.0
24 TraesCS2B01G115700 chr4A 84.524 168 16 3 2861 3018 193509618 193509451 1.250000e-34 158.0
25 TraesCS2B01G115700 chr4A 86.555 119 13 3 3022 3139 706317237 706317353 9.790000e-26 128.0
26 TraesCS2B01G115700 chr7B 85.630 341 26 7 3029 3358 715551660 715551988 1.490000e-88 337.0
27 TraesCS2B01G115700 chr7B 82.659 346 30 11 3029 3363 11520954 11521280 2.560000e-71 279.0
28 TraesCS2B01G115700 chr7B 82.370 346 31 11 3029 3363 11515516 11515842 1.190000e-69 274.0
29 TraesCS2B01G115700 chr7B 88.542 96 8 3 2718 2811 190259986 190259892 2.740000e-21 113.0
30 TraesCS2B01G115700 chr5B 85.586 333 20 5 3029 3361 697815713 697816017 1.160000e-84 324.0
31 TraesCS2B01G115700 chr5B 83.429 350 41 11 3022 3363 695504721 695504381 3.260000e-80 309.0
32 TraesCS2B01G115700 chr5B 90.909 187 16 1 3177 3363 15535326 15535141 2.000000e-62 250.0
33 TraesCS2B01G115700 chr5B 83.333 174 19 4 2855 3018 136818636 136818463 5.810000e-33 152.0
34 TraesCS2B01G115700 chr5B 90.000 90 8 1 2718 2806 518569647 518569558 7.630000e-22 115.0
35 TraesCS2B01G115700 chr5B 87.097 93 12 0 2860 2952 250124634 250124542 4.590000e-19 106.0
36 TraesCS2B01G115700 chr4B 84.302 344 31 9 3019 3361 628920432 628920753 7.000000e-82 315.0
37 TraesCS2B01G115700 chr4B 80.119 337 40 12 3029 3362 654571971 654572283 3.380000e-55 226.0
38 TraesCS2B01G115700 chr4B 93.023 86 5 1 2718 2803 110358633 110358717 1.270000e-24 124.0
39 TraesCS2B01G115700 chrUn 81.287 342 29 7 3029 3363 23301690 23301377 9.320000e-61 244.0
40 TraesCS2B01G115700 chr1B 88.830 188 14 6 3176 3363 26260253 26260073 1.210000e-54 224.0
41 TraesCS2B01G115700 chr7D 79.580 333 41 18 3045 3363 17064960 17064641 2.630000e-51 213.0
42 TraesCS2B01G115700 chr7D 84.483 174 17 2 2855 3018 637690540 637690367 2.680000e-36 163.0
43 TraesCS2B01G115700 chr7D 80.000 230 32 11 3141 3359 54141132 54141358 1.250000e-34 158.0
44 TraesCS2B01G115700 chr7D 83.051 177 14 8 2855 3018 184814156 184814329 2.700000e-31 147.0
45 TraesCS2B01G115700 chr7D 88.636 88 8 1 3023 3108 52249750 52249837 4.590000e-19 106.0
46 TraesCS2B01G115700 chr6B 86.096 187 13 9 3148 3331 35946834 35946658 4.430000e-44 189.0
47 TraesCS2B01G115700 chr4D 77.684 354 44 21 3022 3363 19742620 19742290 2.060000e-42 183.0
48 TraesCS2B01G115700 chr6D 85.632 174 12 5 2855 3018 334388263 334388433 1.600000e-38 171.0
49 TraesCS2B01G115700 chr6D 82.353 170 18 6 2855 3013 335943090 335943258 1.630000e-28 137.0
50 TraesCS2B01G115700 chr6D 80.537 149 19 6 2855 2993 272433794 272433942 4.590000e-19 106.0
51 TraesCS2B01G115700 chr6A 85.057 174 16 2 2855 3018 236378640 236378467 5.770000e-38 169.0
52 TraesCS2B01G115700 chr3B 83.140 172 19 2 2855 3016 331251054 331250883 7.520000e-32 148.0
53 TraesCS2B01G115700 chr3B 89.691 97 7 3 2718 2812 808117074 808117169 1.640000e-23 121.0
54 TraesCS2B01G115700 chr3B 89.773 88 8 1 2718 2805 323357069 323357155 9.860000e-21 111.0
55 TraesCS2B01G115700 chr7A 82.759 174 20 2 2855 3018 186564427 186564600 2.700000e-31 147.0
56 TraesCS2B01G115700 chr7A 92.683 82 6 0 3029 3110 646916879 646916798 5.890000e-23 119.0
57 TraesCS2B01G115700 chr1D 75.000 344 56 24 3029 3363 485394365 485394687 7.570000e-27 132.0
58 TraesCS2B01G115700 chr1D 90.698 86 8 0 2718 2803 320386743 320386828 7.630000e-22 115.0
59 TraesCS2B01G115700 chr5D 91.111 90 6 2 2718 2806 238386519 238386607 1.640000e-23 121.0
60 TraesCS2B01G115700 chr5D 90.217 92 9 0 2861 2952 456638915 456638824 1.640000e-23 121.0
61 TraesCS2B01G115700 chr1A 79.769 173 23 7 2855 3016 114985668 114985497 7.630000e-22 115.0
62 TraesCS2B01G115700 chr5A 85.714 98 14 0 2855 2952 412604840 412604937 1.650000e-18 104.0
63 TraesCS2B01G115700 chr3A 92.188 64 5 0 1537 1600 627967918 627967855 1.280000e-14 91.6
64 TraesCS2B01G115700 chr3D 90.625 64 6 0 1537 1600 485071490 485071427 5.980000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G115700 chr2B 79246073 79249435 3362 False 6211.00 6211 100.000000 1 3363 1 chr2B.!!$F1 3362
1 TraesCS2B01G115700 chr2B 79309013 79310559 1546 True 549.00 852 90.503333 11 1445 3 chr2B.!!$R1 1434
2 TraesCS2B01G115700 chr2A 52390550 52394440 3890 True 1355.00 3434 90.026333 14 3018 3 chr2A.!!$R2 3004
3 TraesCS2B01G115700 chr2A 52271561 52272788 1227 False 506.50 606 88.999500 79 1281 2 chr2A.!!$F2 1202
4 TraesCS2B01G115700 chr2D 50988392 50991017 2625 True 1538.50 2447 87.563000 1 2721 2 chr2D.!!$R1 2720
5 TraesCS2B01G115700 chr2D 50954333 50955442 1109 False 576.50 741 85.342000 1 1445 2 chr2D.!!$F2 1444
6 TraesCS2B01G115700 chr2D 50966786 50968214 1428 False 308.94 641 89.439000 11 1445 5 chr2D.!!$F3 1434

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 222 0.101219 GGCCAGGCTTAATTTGAGCG 59.899 55.0 12.43 0.0 41.03 5.03 F
928 1473 0.333312 TTGACCTGTGGTTGGTTGGT 59.667 50.0 0.00 0.0 38.03 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1811 2404 0.599558 ACTTGCGTACTGCTTACCGA 59.400 50.0 10.27 0.0 46.63 4.69 R
2403 3051 0.928229 CGTACTATGAACAAGGCGGC 59.072 55.0 0.00 0.0 0.00 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 53 2.676471 ACACCCCGCAAATGCTCC 60.676 61.111 3.63 0.00 39.32 4.70
85 92 2.276740 GCTGCCAGGGCTAATGGT 59.723 61.111 12.19 0.00 40.17 3.55
100 107 3.683365 AATGGTGGCACAAGGAATTTC 57.317 42.857 20.82 0.00 44.16 2.17
111 118 1.064825 AGGAATTTCCTCCGTGTGGT 58.935 50.000 12.37 0.00 45.66 4.16
129 140 0.814457 GTGTTGTGTGTGGCCTGAAA 59.186 50.000 3.32 0.00 0.00 2.69
211 222 0.101219 GGCCAGGCTTAATTTGAGCG 59.899 55.000 12.43 0.00 41.03 5.03
250 271 1.133513 TGATGGTGTTTGGTTGGCTCT 60.134 47.619 0.00 0.00 0.00 4.09
367 455 5.392380 GCTGGTGATAAAACAAGGACATGAG 60.392 44.000 0.00 0.00 0.00 2.90
496 661 4.598022 TCATCATCAGTGTCACTCTCTCT 58.402 43.478 1.37 0.00 0.00 3.10
503 668 3.436704 CAGTGTCACTCTCTCTCTCACTC 59.563 52.174 1.37 0.00 33.35 3.51
504 669 3.072330 AGTGTCACTCTCTCTCTCACTCA 59.928 47.826 0.00 0.00 30.43 3.41
505 670 3.188460 GTGTCACTCTCTCTCTCACTCAC 59.812 52.174 0.00 0.00 0.00 3.51
506 671 3.072330 TGTCACTCTCTCTCTCACTCACT 59.928 47.826 0.00 0.00 0.00 3.41
543 717 5.197451 TGTTCACCTCGGCCAAAAATATAT 58.803 37.500 2.24 0.00 0.00 0.86
552 726 4.696455 GGCCAAAAATATATTGCAGCTGT 58.304 39.130 16.64 0.00 0.00 4.40
579 753 2.604914 CTGTAGCACTGTAAAGGCATCG 59.395 50.000 0.00 0.00 0.00 3.84
635 1165 1.755200 TCTTCCCTTTTAGCACCCCT 58.245 50.000 0.00 0.00 0.00 4.79
876 1421 1.302192 GCCTCGGTGGTTGCTGTTA 60.302 57.895 0.00 0.00 38.35 2.41
919 1464 1.681264 GTTTCCCTGTTTGACCTGTGG 59.319 52.381 0.00 0.00 0.00 4.17
920 1465 0.923358 TTCCCTGTTTGACCTGTGGT 59.077 50.000 0.00 0.00 39.44 4.16
924 1469 1.684869 CCTGTTTGACCTGTGGTTGGT 60.685 52.381 0.00 0.00 41.07 3.67
928 1473 0.333312 TTGACCTGTGGTTGGTTGGT 59.667 50.000 0.00 0.00 38.03 3.67
1613 2189 0.679640 CAGGTGCGGTCTCTCTCTCT 60.680 60.000 0.00 0.00 0.00 3.10
1647 2223 2.033675 CCGGTAAATAATTTCGCACCCC 59.966 50.000 0.00 0.00 0.00 4.95
1648 2224 2.683867 CGGTAAATAATTTCGCACCCCA 59.316 45.455 0.00 0.00 0.00 4.96
1811 2404 0.178953 ATTCACTTGTGCCTTGGCCT 60.179 50.000 3.32 0.00 0.00 5.19
1813 2406 2.281761 ACTTGTGCCTTGGCCTCG 60.282 61.111 3.32 0.00 0.00 4.63
1870 2470 2.158957 GGCCAATCAGGACGAGAATGTA 60.159 50.000 0.00 0.00 41.22 2.29
1892 2492 4.899502 ACTGTACTGGCCATAATAGATGC 58.100 43.478 5.51 0.00 0.00 3.91
1893 2493 4.256920 CTGTACTGGCCATAATAGATGCC 58.743 47.826 5.51 0.00 44.27 4.40
1946 2550 4.228912 CCAAACAGTGGTGTGATCTTTC 57.771 45.455 0.00 0.00 43.20 2.62
1947 2551 3.004734 CCAAACAGTGGTGTGATCTTTCC 59.995 47.826 0.00 0.00 43.20 3.13
1948 2552 3.576078 AACAGTGGTGTGATCTTTCCA 57.424 42.857 0.00 0.00 36.84 3.53
1949 2553 3.795688 ACAGTGGTGTGATCTTTCCAT 57.204 42.857 0.00 0.00 34.75 3.41
1950 2554 3.415212 ACAGTGGTGTGATCTTTCCATG 58.585 45.455 0.00 0.00 34.75 3.66
1951 2555 3.181440 ACAGTGGTGTGATCTTTCCATGT 60.181 43.478 0.00 4.28 34.75 3.21
1952 2556 3.822735 CAGTGGTGTGATCTTTCCATGTT 59.177 43.478 0.00 0.00 32.45 2.71
1953 2557 4.074970 AGTGGTGTGATCTTTCCATGTTC 58.925 43.478 0.00 0.00 32.45 3.18
1954 2558 4.074970 GTGGTGTGATCTTTCCATGTTCT 58.925 43.478 0.00 0.00 32.45 3.01
1955 2559 4.520492 GTGGTGTGATCTTTCCATGTTCTT 59.480 41.667 0.00 0.00 32.45 2.52
1956 2560 4.520111 TGGTGTGATCTTTCCATGTTCTTG 59.480 41.667 0.00 0.00 0.00 3.02
1957 2561 4.520492 GGTGTGATCTTTCCATGTTCTTGT 59.480 41.667 0.00 0.00 0.00 3.16
1958 2562 5.705441 GGTGTGATCTTTCCATGTTCTTGTA 59.295 40.000 0.00 0.00 0.00 2.41
1959 2563 6.375455 GGTGTGATCTTTCCATGTTCTTGTAT 59.625 38.462 0.00 0.00 0.00 2.29
1960 2564 7.552687 GGTGTGATCTTTCCATGTTCTTGTATA 59.447 37.037 0.00 0.00 0.00 1.47
1961 2565 8.946085 GTGTGATCTTTCCATGTTCTTGTATAA 58.054 33.333 0.00 0.00 0.00 0.98
1962 2566 9.685276 TGTGATCTTTCCATGTTCTTGTATAAT 57.315 29.630 0.00 0.00 0.00 1.28
1965 2569 9.455847 GATCTTTCCATGTTCTTGTATAATTGC 57.544 33.333 0.00 0.00 0.00 3.56
1966 2570 8.579850 TCTTTCCATGTTCTTGTATAATTGCT 57.420 30.769 0.00 0.00 0.00 3.91
1971 2575 8.677300 TCCATGTTCTTGTATAATTGCTTCTTC 58.323 33.333 0.00 0.00 0.00 2.87
2068 2681 9.219715 AGATTAAACCTCTTAATCTAAGCCTCT 57.780 33.333 14.96 0.00 45.04 3.69
2075 2688 8.007742 ACCTCTTAATCTAAGCCTCTTATCTCA 58.992 37.037 0.00 0.00 35.76 3.27
2091 2704 8.012957 TCTTATCTCAATTCCTAGACTGAACC 57.987 38.462 0.00 0.00 0.00 3.62
2118 2731 2.437200 GCATTTGTTGGCTTACTGCA 57.563 45.000 0.00 0.00 45.15 4.41
2119 2732 2.963432 GCATTTGTTGGCTTACTGCAT 58.037 42.857 0.00 0.00 45.15 3.96
2133 2751 3.037431 ACTGCATCACAACAGACTCTC 57.963 47.619 0.00 0.00 37.35 3.20
2141 2766 3.954258 TCACAACAGACTCTCAAGACTGA 59.046 43.478 10.95 0.00 44.78 3.41
2146 2771 5.327616 ACAGACTCTCAAGACTGATGATG 57.672 43.478 10.95 0.00 44.78 3.07
2149 2774 6.014755 ACAGACTCTCAAGACTGATGATGAAA 60.015 38.462 10.95 0.00 44.78 2.69
2165 2790 3.333029 TGAAATCACTTCATCGGAGCA 57.667 42.857 0.00 0.00 39.20 4.26
2325 2950 4.704833 GGAGCCGAAGCAGCACCA 62.705 66.667 0.00 0.00 43.56 4.17
2373 3006 0.308068 TCCTTCTGATCGATCGACGC 59.692 55.000 22.06 15.95 42.26 5.19
2386 3019 2.126424 GACGCCGAGAGACACACC 60.126 66.667 0.00 0.00 0.00 4.16
2466 3120 2.929641 AGAGTAGTAGGGCGTTAGGAC 58.070 52.381 0.00 0.00 0.00 3.85
2506 3160 3.296322 AACGCTGAGTGAGAAGAAGAG 57.704 47.619 0.00 0.00 0.00 2.85
2508 3162 1.067985 CGCTGAGTGAGAAGAAGAGCA 60.068 52.381 0.00 0.00 0.00 4.26
2592 3251 1.064979 AGTTCGTTTCTGGTTGGGTGT 60.065 47.619 0.00 0.00 0.00 4.16
2653 3316 5.301298 GGAATTCCTCATCAGGGAAATTCTG 59.699 44.000 17.73 0.00 44.64 3.02
2655 3318 4.494091 TCCTCATCAGGGAAATTCTGTC 57.506 45.455 0.00 0.00 40.80 3.51
2662 3325 1.177401 GGGAAATTCTGTCACTGCCC 58.823 55.000 0.00 0.00 0.00 5.36
2698 3361 2.030893 CACGCTGAAAATGTCCACACAT 60.031 45.455 0.00 0.00 45.89 3.21
2712 3375 3.684305 TCCACACATTCAAGCGATTGTAG 59.316 43.478 13.85 7.08 34.71 2.74
2733 3396 1.123928 CTGTACTCCCTCCATCCCAC 58.876 60.000 0.00 0.00 0.00 4.61
2734 3397 0.415830 TGTACTCCCTCCATCCCACA 59.584 55.000 0.00 0.00 0.00 4.17
2735 3398 1.203376 TGTACTCCCTCCATCCCACAA 60.203 52.381 0.00 0.00 0.00 3.33
2736 3399 2.127708 GTACTCCCTCCATCCCACAAT 58.872 52.381 0.00 0.00 0.00 2.71
2737 3400 0.921896 ACTCCCTCCATCCCACAATG 59.078 55.000 0.00 0.00 0.00 2.82
2738 3401 0.921896 CTCCCTCCATCCCACAATGT 59.078 55.000 0.00 0.00 0.00 2.71
2739 3402 2.126882 CTCCCTCCATCCCACAATGTA 58.873 52.381 0.00 0.00 0.00 2.29
2740 3403 2.509548 CTCCCTCCATCCCACAATGTAA 59.490 50.000 0.00 0.00 0.00 2.41
2741 3404 2.509548 TCCCTCCATCCCACAATGTAAG 59.490 50.000 0.00 0.00 0.00 2.34
2742 3405 2.509548 CCCTCCATCCCACAATGTAAGA 59.490 50.000 0.00 0.00 0.00 2.10
2743 3406 3.545703 CCTCCATCCCACAATGTAAGAC 58.454 50.000 0.00 0.00 0.00 3.01
2744 3407 3.198068 CTCCATCCCACAATGTAAGACG 58.802 50.000 0.00 0.00 0.00 4.18
2745 3408 2.569853 TCCATCCCACAATGTAAGACGT 59.430 45.455 0.00 0.00 0.00 4.34
2746 3409 3.008594 TCCATCCCACAATGTAAGACGTT 59.991 43.478 0.00 0.00 0.00 3.99
2747 3410 3.756434 CCATCCCACAATGTAAGACGTTT 59.244 43.478 0.00 0.00 0.00 3.60
2748 3411 4.217550 CCATCCCACAATGTAAGACGTTTT 59.782 41.667 0.00 0.00 0.00 2.43
2749 3412 5.278758 CCATCCCACAATGTAAGACGTTTTT 60.279 40.000 0.00 0.00 0.00 1.94
2797 3460 6.716934 ATGTCTTACATTATGAGACGGAGT 57.283 37.500 0.00 0.00 44.98 3.85
2798 3461 6.507900 ATGTCTTACATTATGAGACGGAGTG 58.492 40.000 0.00 0.00 44.98 3.51
2799 3462 6.321435 ATGTCTTACATTATGAGACGGAGTGA 59.679 38.462 0.00 0.00 44.98 3.41
2800 3463 7.469318 ATGTCTTACATTATGAGACGGAGTGAG 60.469 40.741 0.00 0.00 44.98 3.51
2819 3482 8.276325 GGAGTGAGTAATTTATAATCTGCAACG 58.724 37.037 0.00 0.00 0.00 4.10
2822 3485 7.794349 GTGAGTAATTTATAATCTGCAACGCTC 59.206 37.037 0.00 0.00 0.00 5.03
2834 3497 1.259507 GCAACGCTCGTGAAGTAACAA 59.740 47.619 0.00 0.00 0.00 2.83
2851 3515 4.642489 AACAATGGGAGGGGGATTTAAT 57.358 40.909 0.00 0.00 0.00 1.40
2882 3546 7.360353 CGACACTTGATGCTCTTTCTTGATTTA 60.360 37.037 0.00 0.00 0.00 1.40
2886 3550 8.897752 ACTTGATGCTCTTTCTTGATTTATACC 58.102 33.333 0.00 0.00 0.00 2.73
2889 3553 8.489489 TGATGCTCTTTCTTGATTTATACCTCT 58.511 33.333 0.00 0.00 0.00 3.69
2890 3554 9.988815 GATGCTCTTTCTTGATTTATACCTCTA 57.011 33.333 0.00 0.00 0.00 2.43
2900 3564 9.680315 CTTGATTTATACCTCTACGGTCTTAAG 57.320 37.037 0.00 0.00 44.93 1.85
2936 3600 7.114754 AGCTCATAGATTGTTTTCTTCATCCA 58.885 34.615 0.00 0.00 0.00 3.41
2965 3629 8.507249 GCATATTATAGTTTTCTGGTAGCTTGG 58.493 37.037 0.00 0.00 0.00 3.61
2980 3644 1.068055 GCTTGGTGGCAATGACTGAAG 60.068 52.381 0.00 0.00 0.00 3.02
2984 3648 2.158623 TGGTGGCAATGACTGAAGAACT 60.159 45.455 0.00 0.00 0.00 3.01
2993 3657 7.254727 GGCAATGACTGAAGAACTCTATCAATC 60.255 40.741 0.00 0.00 0.00 2.67
3007 3671 2.509052 TCAATCGCTACTTCATCCGG 57.491 50.000 0.00 0.00 0.00 5.14
3020 3684 3.904800 TCATCCGGAAGATTAACTGCA 57.095 42.857 9.01 0.00 30.59 4.41
3021 3685 3.531538 TCATCCGGAAGATTAACTGCAC 58.468 45.455 9.01 0.00 30.59 4.57
3022 3686 2.396590 TCCGGAAGATTAACTGCACC 57.603 50.000 0.00 0.00 0.00 5.01
3025 3689 2.280628 CGGAAGATTAACTGCACCCTC 58.719 52.381 0.00 0.00 0.00 4.30
3026 3690 2.644676 GGAAGATTAACTGCACCCTCC 58.355 52.381 0.00 0.00 0.00 4.30
3027 3691 2.644676 GAAGATTAACTGCACCCTCCC 58.355 52.381 0.00 0.00 0.00 4.30
3029 3693 3.130734 AGATTAACTGCACCCTCCCTA 57.869 47.619 0.00 0.00 0.00 3.53
3030 3694 3.041946 AGATTAACTGCACCCTCCCTAG 58.958 50.000 0.00 0.00 0.00 3.02
3031 3695 2.337359 TTAACTGCACCCTCCCTAGT 57.663 50.000 0.00 0.00 0.00 2.57
3032 3696 1.861982 TAACTGCACCCTCCCTAGTC 58.138 55.000 0.00 0.00 0.00 2.59
3034 3698 2.040606 TGCACCCTCCCTAGTCCC 59.959 66.667 0.00 0.00 0.00 4.46
3036 3700 2.444140 CACCCTCCCTAGTCCCGG 60.444 72.222 0.00 0.00 0.00 5.73
3038 3702 2.367378 CCCTCCCTAGTCCCGGTT 59.633 66.667 0.00 0.00 0.00 4.44
3039 3703 2.064581 CCCTCCCTAGTCCCGGTTG 61.065 68.421 0.00 0.00 0.00 3.77
3040 3704 1.305887 CCTCCCTAGTCCCGGTTGT 60.306 63.158 0.00 0.00 0.00 3.32
3043 3707 0.472352 TCCCTAGTCCCGGTTGTGTT 60.472 55.000 0.00 0.00 0.00 3.32
3044 3708 1.203162 TCCCTAGTCCCGGTTGTGTTA 60.203 52.381 0.00 0.00 0.00 2.41
3046 3710 1.403249 CCTAGTCCCGGTTGTGTTACG 60.403 57.143 0.00 0.00 0.00 3.18
3048 3712 0.752054 AGTCCCGGTTGTGTTACGAA 59.248 50.000 0.00 0.00 0.00 3.85
3049 3713 0.861185 GTCCCGGTTGTGTTACGAAC 59.139 55.000 0.00 0.00 0.00 3.95
3052 3716 0.863144 CCGGTTGTGTTACGAACCAG 59.137 55.000 14.01 8.17 41.61 4.00
3053 3717 0.863144 CGGTTGTGTTACGAACCAGG 59.137 55.000 14.01 0.00 41.61 4.45
3054 3718 1.538634 CGGTTGTGTTACGAACCAGGA 60.539 52.381 14.01 0.00 41.61 3.86
3055 3719 1.869132 GGTTGTGTTACGAACCAGGAC 59.131 52.381 10.19 0.00 41.24 3.85
3056 3720 2.484241 GGTTGTGTTACGAACCAGGACT 60.484 50.000 10.19 0.00 41.24 3.85
3058 3722 4.370917 GTTGTGTTACGAACCAGGACTAA 58.629 43.478 0.00 0.00 0.00 2.24
3059 3723 4.669206 TGTGTTACGAACCAGGACTAAA 57.331 40.909 0.00 0.00 0.00 1.85
3060 3724 4.624015 TGTGTTACGAACCAGGACTAAAG 58.376 43.478 0.00 0.00 0.00 1.85
3061 3725 3.992427 GTGTTACGAACCAGGACTAAAGG 59.008 47.826 0.00 0.00 0.00 3.11
3062 3726 2.998670 GTTACGAACCAGGACTAAAGGC 59.001 50.000 0.00 0.00 0.00 4.35
3063 3727 0.323957 ACGAACCAGGACTAAAGGCC 59.676 55.000 0.00 0.00 0.00 5.19
3064 3728 0.392595 CGAACCAGGACTAAAGGCCC 60.393 60.000 0.00 0.00 0.00 5.80
3065 3729 0.992695 GAACCAGGACTAAAGGCCCT 59.007 55.000 0.00 0.00 0.00 5.19
3066 3730 0.992695 AACCAGGACTAAAGGCCCTC 59.007 55.000 0.00 0.00 0.00 4.30
3068 3732 0.914417 CCAGGACTAAAGGCCCTCCA 60.914 60.000 0.00 0.00 33.74 3.86
3070 3734 0.178873 AGGACTAAAGGCCCTCCACA 60.179 55.000 0.00 0.00 33.74 4.17
3071 3735 0.919710 GGACTAAAGGCCCTCCACAT 59.080 55.000 0.00 0.00 33.74 3.21
3072 3736 1.408822 GGACTAAAGGCCCTCCACATG 60.409 57.143 0.00 0.00 33.74 3.21
3073 3737 0.625849 ACTAAAGGCCCTCCACATGG 59.374 55.000 0.00 0.00 33.74 3.66
3079 3743 4.864334 CCCTCCACATGGCCGCTC 62.864 72.222 0.00 0.00 34.44 5.03
3080 3744 3.790437 CCTCCACATGGCCGCTCT 61.790 66.667 0.00 0.00 34.44 4.09
3081 3745 2.434843 CCTCCACATGGCCGCTCTA 61.435 63.158 0.00 0.00 34.44 2.43
3083 3747 0.602106 CTCCACATGGCCGCTCTATG 60.602 60.000 0.00 0.00 39.31 2.23
3084 3748 1.598962 CCACATGGCCGCTCTATGG 60.599 63.158 0.00 0.00 37.91 2.74
3085 3749 1.447217 CACATGGCCGCTCTATGGA 59.553 57.895 0.00 0.00 37.91 3.41
3086 3750 0.602106 CACATGGCCGCTCTATGGAG 60.602 60.000 0.86 0.86 37.91 3.86
3101 3765 1.276622 TGGAGCTCCACCTTTAGTCC 58.723 55.000 32.00 1.86 42.01 3.85
3102 3766 0.542333 GGAGCTCCACCTTTAGTCCC 59.458 60.000 28.43 0.00 35.64 4.46
3103 3767 0.175989 GAGCTCCACCTTTAGTCCCG 59.824 60.000 0.87 0.00 0.00 5.14
3105 3769 1.551019 GCTCCACCTTTAGTCCCGGT 61.551 60.000 0.00 0.00 0.00 5.28
3106 3770 0.981943 CTCCACCTTTAGTCCCGGTT 59.018 55.000 0.00 0.00 0.00 4.44
3107 3771 0.688487 TCCACCTTTAGTCCCGGTTG 59.312 55.000 0.00 0.00 0.00 3.77
3108 3772 0.958876 CCACCTTTAGTCCCGGTTGC 60.959 60.000 0.00 0.00 0.00 4.17
3109 3773 0.958876 CACCTTTAGTCCCGGTTGCC 60.959 60.000 0.00 0.00 0.00 4.52
3120 3784 1.743995 CGGTTGCCGGGACTAAAGG 60.744 63.158 2.18 0.00 44.15 3.11
3121 3785 1.681076 GGTTGCCGGGACTAAAGGA 59.319 57.895 2.18 0.00 0.00 3.36
3124 3788 2.443416 GTTGCCGGGACTAAAGGAATT 58.557 47.619 2.18 0.00 0.00 2.17
3125 3789 2.823747 GTTGCCGGGACTAAAGGAATTT 59.176 45.455 2.18 0.00 0.00 1.82
3126 3790 3.163616 TGCCGGGACTAAAGGAATTTT 57.836 42.857 2.18 0.00 0.00 1.82
3238 4224 4.478206 TTCAATCTCTCATCACCCACTC 57.522 45.455 0.00 0.00 0.00 3.51
3239 4225 3.717576 TCAATCTCTCATCACCCACTCT 58.282 45.455 0.00 0.00 0.00 3.24
3245 4231 5.462240 TCTCTCATCACCCACTCTAATCAT 58.538 41.667 0.00 0.00 0.00 2.45
3247 4233 4.590647 TCTCATCACCCACTCTAATCATCC 59.409 45.833 0.00 0.00 0.00 3.51
3249 4235 4.971282 TCATCACCCACTCTAATCATCCTT 59.029 41.667 0.00 0.00 0.00 3.36
3251 4237 4.361783 TCACCCACTCTAATCATCCTTCA 58.638 43.478 0.00 0.00 0.00 3.02
3255 4241 5.163258 ACCCACTCTAATCATCCTTCATCAC 60.163 44.000 0.00 0.00 0.00 3.06
3256 4242 5.071519 CCCACTCTAATCATCCTTCATCACT 59.928 44.000 0.00 0.00 0.00 3.41
3257 4243 5.990386 CCACTCTAATCATCCTTCATCACTG 59.010 44.000 0.00 0.00 0.00 3.66
3258 4244 5.466058 CACTCTAATCATCCTTCATCACTGC 59.534 44.000 0.00 0.00 0.00 4.40
3259 4245 5.366186 ACTCTAATCATCCTTCATCACTGCT 59.634 40.000 0.00 0.00 0.00 4.24
3260 4246 5.851720 TCTAATCATCCTTCATCACTGCTC 58.148 41.667 0.00 0.00 0.00 4.26
3261 4247 4.498894 AATCATCCTTCATCACTGCTCA 57.501 40.909 0.00 0.00 0.00 4.26
3262 4248 3.986996 TCATCCTTCATCACTGCTCAA 57.013 42.857 0.00 0.00 0.00 3.02
3263 4249 4.498894 TCATCCTTCATCACTGCTCAAT 57.501 40.909 0.00 0.00 0.00 2.57
3264 4250 4.851843 TCATCCTTCATCACTGCTCAATT 58.148 39.130 0.00 0.00 0.00 2.32
3265 4251 5.993055 TCATCCTTCATCACTGCTCAATTA 58.007 37.500 0.00 0.00 0.00 1.40
3268 4254 5.993055 TCCTTCATCACTGCTCAATTATGA 58.007 37.500 0.00 0.00 0.00 2.15
3269 4255 6.417258 TCCTTCATCACTGCTCAATTATGAA 58.583 36.000 0.00 0.00 34.49 2.57
3271 4257 6.441093 TTCATCACTGCTCAATTATGAACC 57.559 37.500 0.00 0.00 34.49 3.62
3272 4258 5.499313 TCATCACTGCTCAATTATGAACCA 58.501 37.500 0.00 0.00 34.49 3.67
3273 4259 5.355071 TCATCACTGCTCAATTATGAACCAC 59.645 40.000 0.00 0.00 34.49 4.16
3274 4260 4.910195 TCACTGCTCAATTATGAACCACT 58.090 39.130 0.00 0.00 34.49 4.00
3275 4261 5.316167 TCACTGCTCAATTATGAACCACTT 58.684 37.500 0.00 0.00 34.49 3.16
3278 4264 7.611467 TCACTGCTCAATTATGAACCACTTATT 59.389 33.333 0.00 0.00 34.49 1.40
3280 4266 7.067494 ACTGCTCAATTATGAACCACTTATTCC 59.933 37.037 0.00 0.00 34.49 3.01
3281 4267 6.889177 TGCTCAATTATGAACCACTTATTCCA 59.111 34.615 0.00 0.00 34.49 3.53
3283 4269 8.250332 GCTCAATTATGAACCACTTATTCCAAA 58.750 33.333 0.00 0.00 34.49 3.28
3286 4272 9.236691 CAATTATGAACCACTTATTCCAAATCG 57.763 33.333 0.00 0.00 0.00 3.34
3287 4273 7.931578 TTATGAACCACTTATTCCAAATCGT 57.068 32.000 0.00 0.00 0.00 3.73
3289 4275 5.067273 TGAACCACTTATTCCAAATCGTGT 58.933 37.500 0.00 0.00 0.00 4.49
3291 4277 6.711194 TGAACCACTTATTCCAAATCGTGTAA 59.289 34.615 0.00 0.00 0.00 2.41
3293 4279 6.235664 ACCACTTATTCCAAATCGTGTAACT 58.764 36.000 0.00 0.00 31.75 2.24
3294 4280 6.713450 ACCACTTATTCCAAATCGTGTAACTT 59.287 34.615 0.00 0.00 31.75 2.66
3295 4281 7.094933 ACCACTTATTCCAAATCGTGTAACTTC 60.095 37.037 0.00 0.00 31.75 3.01
3297 4283 3.799137 TTCCAAATCGTGTAACTTCGC 57.201 42.857 0.00 0.00 31.75 4.70
3299 4285 2.734606 TCCAAATCGTGTAACTTCGCAG 59.265 45.455 0.00 0.00 31.75 5.18
3300 4286 2.495939 CAAATCGTGTAACTTCGCAGC 58.504 47.619 0.00 0.00 31.75 5.25
3301 4287 1.076332 AATCGTGTAACTTCGCAGCC 58.924 50.000 0.00 0.00 31.75 4.85
3302 4288 1.076533 ATCGTGTAACTTCGCAGCCG 61.077 55.000 0.00 0.00 31.75 5.52
3303 4289 2.726691 CGTGTAACTTCGCAGCCGG 61.727 63.158 0.00 0.00 31.57 6.13
3304 4290 1.666872 GTGTAACTTCGCAGCCGGT 60.667 57.895 1.90 0.00 34.56 5.28
3305 4291 1.373748 TGTAACTTCGCAGCCGGTC 60.374 57.895 1.90 0.00 34.56 4.79
3306 4292 1.373748 GTAACTTCGCAGCCGGTCA 60.374 57.895 1.90 0.00 34.56 4.02
3307 4293 1.373748 TAACTTCGCAGCCGGTCAC 60.374 57.895 1.90 0.00 34.56 3.67
3314 4300 3.402681 CAGCCGGTCACCCATCCT 61.403 66.667 1.90 0.00 0.00 3.24
3315 4301 3.083997 AGCCGGTCACCCATCCTC 61.084 66.667 1.90 0.00 0.00 3.71
3316 4302 3.083997 GCCGGTCACCCATCCTCT 61.084 66.667 1.90 0.00 0.00 3.69
3317 4303 3.095347 GCCGGTCACCCATCCTCTC 62.095 68.421 1.90 0.00 0.00 3.20
3318 4304 1.685765 CCGGTCACCCATCCTCTCA 60.686 63.158 0.00 0.00 0.00 3.27
3319 4305 1.517832 CGGTCACCCATCCTCTCAC 59.482 63.158 0.00 0.00 0.00 3.51
3321 4307 1.685180 CGGTCACCCATCCTCTCACTA 60.685 57.143 0.00 0.00 0.00 2.74
3322 4308 1.757699 GGTCACCCATCCTCTCACTAC 59.242 57.143 0.00 0.00 0.00 2.73
3324 4310 2.691011 GTCACCCATCCTCTCACTACTC 59.309 54.545 0.00 0.00 0.00 2.59
3325 4311 2.035632 CACCCATCCTCTCACTACTCC 58.964 57.143 0.00 0.00 0.00 3.85
3326 4312 1.646447 ACCCATCCTCTCACTACTCCA 59.354 52.381 0.00 0.00 0.00 3.86
3327 4313 2.315176 CCCATCCTCTCACTACTCCAG 58.685 57.143 0.00 0.00 0.00 3.86
3328 4314 2.358721 CCCATCCTCTCACTACTCCAGT 60.359 54.545 0.00 0.00 38.32 4.00
3329 4315 2.955660 CCATCCTCTCACTACTCCAGTC 59.044 54.545 0.00 0.00 34.26 3.51
3330 4316 3.372566 CCATCCTCTCACTACTCCAGTCT 60.373 52.174 0.00 0.00 34.26 3.24
3332 4318 2.913617 TCCTCTCACTACTCCAGTCTGA 59.086 50.000 0.00 0.00 34.26 3.27
3333 4319 3.054728 TCCTCTCACTACTCCAGTCTGAG 60.055 52.174 0.00 7.57 34.26 3.35
3334 4320 2.682856 CTCTCACTACTCCAGTCTGAGC 59.317 54.545 0.00 0.00 34.26 4.26
3336 4322 3.023119 CTCACTACTCCAGTCTGAGCAT 58.977 50.000 0.00 0.00 34.26 3.79
3337 4323 2.757314 TCACTACTCCAGTCTGAGCATG 59.243 50.000 0.00 0.00 34.26 4.06
3338 4324 1.480137 ACTACTCCAGTCTGAGCATGC 59.520 52.381 10.51 10.51 35.72 4.06
3340 4326 0.982704 ACTCCAGTCTGAGCATGCTT 59.017 50.000 23.61 5.39 35.72 3.91
3341 4327 2.182827 ACTCCAGTCTGAGCATGCTTA 58.817 47.619 23.61 17.59 35.72 3.09
3342 4328 2.568956 ACTCCAGTCTGAGCATGCTTAA 59.431 45.455 23.61 12.67 35.72 1.85
3343 4329 3.196463 CTCCAGTCTGAGCATGCTTAAG 58.804 50.000 23.61 21.44 0.00 1.85
3344 4330 2.568956 TCCAGTCTGAGCATGCTTAAGT 59.431 45.455 23.61 10.32 0.00 2.24
3346 4332 3.755378 CCAGTCTGAGCATGCTTAAGTTT 59.245 43.478 23.61 11.88 0.00 2.66
3348 4334 5.152097 CAGTCTGAGCATGCTTAAGTTTTG 58.848 41.667 23.61 16.31 0.00 2.44
3349 4335 5.049198 CAGTCTGAGCATGCTTAAGTTTTGA 60.049 40.000 23.61 7.21 0.00 2.69
3350 4336 5.180868 AGTCTGAGCATGCTTAAGTTTTGAG 59.819 40.000 23.61 3.13 0.00 3.02
3352 4338 5.532406 TCTGAGCATGCTTAAGTTTTGAGTT 59.468 36.000 23.61 0.00 0.00 3.01
3353 4339 5.762045 TGAGCATGCTTAAGTTTTGAGTTC 58.238 37.500 23.61 4.20 0.00 3.01
3357 4343 8.115490 AGCATGCTTAAGTTTTGAGTTCTATT 57.885 30.769 16.30 0.00 0.00 1.73
3358 4344 8.239998 AGCATGCTTAAGTTTTGAGTTCTATTC 58.760 33.333 16.30 0.00 0.00 1.75
3359 4345 7.486232 GCATGCTTAAGTTTTGAGTTCTATTCC 59.514 37.037 11.37 0.00 0.00 3.01
3361 4347 6.433093 TGCTTAAGTTTTGAGTTCTATTCCCC 59.567 38.462 4.02 0.00 0.00 4.81
3362 4348 6.127703 GCTTAAGTTTTGAGTTCTATTCCCCC 60.128 42.308 4.02 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.227999 TGGCTGAGCACGCTACAAAC 61.228 55.000 6.82 0.00 0.00 2.93
6 7 0.740868 GATGGCTGAGCACGCTACAA 60.741 55.000 6.82 0.00 0.00 2.41
46 53 4.213482 GCCCGTGATTAAGCCTAGTTAATG 59.787 45.833 3.70 0.00 33.60 1.90
100 107 1.153249 ACACAACACCACACGGAGG 60.153 57.895 0.00 0.00 35.59 4.30
102 109 1.021920 CACACACAACACCACACGGA 61.022 55.000 0.00 0.00 35.59 4.69
103 110 1.427419 CACACACAACACCACACGG 59.573 57.895 0.00 0.00 38.77 4.94
106 113 2.049185 GGCCACACACAACACCACA 61.049 57.895 0.00 0.00 0.00 4.17
107 114 1.752694 AGGCCACACACAACACCAC 60.753 57.895 5.01 0.00 0.00 4.16
108 115 1.752310 CAGGCCACACACAACACCA 60.752 57.895 5.01 0.00 0.00 4.17
109 116 1.034838 TTCAGGCCACACACAACACC 61.035 55.000 5.01 0.00 0.00 4.16
111 118 1.774110 ATTTCAGGCCACACACAACA 58.226 45.000 5.01 0.00 0.00 3.33
129 140 1.474077 GCTCGAAGTGGAAATGGCAAT 59.526 47.619 0.00 0.00 0.00 3.56
168 179 0.326238 AAGGGGAATCCGCTCCTACA 60.326 55.000 19.49 0.00 46.26 2.74
250 271 9.288576 CAGATGAGGCATATATTTTTGTCCTAA 57.711 33.333 0.00 0.00 0.00 2.69
367 455 3.385384 GGGGCTTTCAGCTTGGGC 61.385 66.667 0.00 0.00 41.99 5.36
496 661 1.252175 GAGTGGAGCAGTGAGTGAGA 58.748 55.000 0.00 0.00 0.00 3.27
503 668 1.261480 ACAGTAGGAGTGGAGCAGTG 58.739 55.000 0.00 0.00 0.00 3.66
504 669 1.896465 GAACAGTAGGAGTGGAGCAGT 59.104 52.381 0.00 0.00 0.00 4.40
505 670 1.895798 TGAACAGTAGGAGTGGAGCAG 59.104 52.381 0.00 0.00 0.00 4.24
506 671 1.618837 GTGAACAGTAGGAGTGGAGCA 59.381 52.381 0.00 0.00 0.00 4.26
552 726 3.557054 CCTTTACAGTGCTACAGCTTGGA 60.557 47.826 2.44 0.00 42.66 3.53
579 753 1.336980 GGTGGTGAAAGAGGAGACGAC 60.337 57.143 0.00 0.00 0.00 4.34
610 796 3.054361 GGTGCTAAAAGGGAAGATGGAGA 60.054 47.826 0.00 0.00 0.00 3.71
615 801 2.242452 GAGGGGTGCTAAAAGGGAAGAT 59.758 50.000 0.00 0.00 0.00 2.40
619 1142 1.633945 GAAGAGGGGTGCTAAAAGGGA 59.366 52.381 0.00 0.00 0.00 4.20
635 1165 3.319198 GCCGTGTGGGGGAGAAGA 61.319 66.667 0.00 0.00 35.78 2.87
771 1301 4.170468 AGGAAGCAACAGGAAAGAAAGA 57.830 40.909 0.00 0.00 0.00 2.52
876 1421 2.554893 ACACGCCATTACAAACGGAAAT 59.445 40.909 0.00 0.00 0.00 2.17
919 1464 0.675633 ATCAGCTGCAACCAACCAAC 59.324 50.000 9.47 0.00 0.00 3.77
920 1465 0.961019 GATCAGCTGCAACCAACCAA 59.039 50.000 9.47 0.00 0.00 3.67
924 1469 2.679934 CGCGATCAGCTGCAACCAA 61.680 57.895 9.47 0.00 45.59 3.67
928 1473 2.048316 TGTCGCGATCAGCTGCAA 60.048 55.556 14.06 0.00 45.59 4.08
1054 1605 3.001406 GTACACGGACCCCTGCCT 61.001 66.667 0.00 0.00 0.00 4.75
1116 1667 1.153289 CTCCAGGTTCATGCTCCGG 60.153 63.158 0.00 0.00 0.00 5.14
1451 2027 4.821589 CCTGCGAGAGGAACCCGC 62.822 72.222 0.00 0.00 46.33 6.13
1452 2028 4.821589 GCCTGCGAGAGGAACCCG 62.822 72.222 5.14 0.00 46.33 5.28
1453 2029 4.475135 GGCCTGCGAGAGGAACCC 62.475 72.222 0.00 0.00 46.33 4.11
1454 2030 4.821589 CGGCCTGCGAGAGGAACC 62.822 72.222 0.00 0.00 46.33 3.62
1608 2184 1.099689 GGAGAAGGTGACCGAGAGAG 58.900 60.000 0.00 0.00 0.00 3.20
1609 2185 3.267908 GGAGAAGGTGACCGAGAGA 57.732 57.895 0.00 0.00 0.00 3.10
1654 2230 2.073816 GAATCCGTCAAAAAGAGGCGA 58.926 47.619 0.00 0.00 0.00 5.54
1658 2234 2.527442 GGCGAATCCGTCAAAAAGAG 57.473 50.000 0.00 0.00 40.69 2.85
1786 2369 4.501400 GCCAAGGCACAAGTGAATTAACTT 60.501 41.667 6.14 1.96 39.87 2.66
1811 2404 0.599558 ACTTGCGTACTGCTTACCGA 59.400 50.000 10.27 0.00 46.63 4.69
1813 2406 1.067071 AGGACTTGCGTACTGCTTACC 60.067 52.381 10.27 8.50 46.63 2.85
1870 2470 4.263068 GGCATCTATTATGGCCAGTACAGT 60.263 45.833 13.05 0.00 45.70 3.55
1892 2492 1.202770 AGGAAGTTTGGAAGTGGTCGG 60.203 52.381 0.00 0.00 0.00 4.79
1893 2493 1.873591 CAGGAAGTTTGGAAGTGGTCG 59.126 52.381 0.00 0.00 0.00 4.79
1941 2545 8.579850 AGCAATTATACAAGAACATGGAAAGA 57.420 30.769 0.00 0.00 0.00 2.52
1942 2546 9.294030 GAAGCAATTATACAAGAACATGGAAAG 57.706 33.333 0.00 0.00 0.00 2.62
1943 2547 9.023962 AGAAGCAATTATACAAGAACATGGAAA 57.976 29.630 0.00 0.00 0.00 3.13
1944 2548 8.579850 AGAAGCAATTATACAAGAACATGGAA 57.420 30.769 0.00 0.00 0.00 3.53
1945 2549 8.579850 AAGAAGCAATTATACAAGAACATGGA 57.420 30.769 0.00 0.00 0.00 3.41
1946 2550 8.680903 AGAAGAAGCAATTATACAAGAACATGG 58.319 33.333 0.00 0.00 0.00 3.66
1947 2551 9.713740 GAGAAGAAGCAATTATACAAGAACATG 57.286 33.333 0.00 0.00 0.00 3.21
1948 2552 9.678260 AGAGAAGAAGCAATTATACAAGAACAT 57.322 29.630 0.00 0.00 0.00 2.71
1949 2553 8.939929 CAGAGAAGAAGCAATTATACAAGAACA 58.060 33.333 0.00 0.00 0.00 3.18
1950 2554 9.155975 TCAGAGAAGAAGCAATTATACAAGAAC 57.844 33.333 0.00 0.00 0.00 3.01
1951 2555 9.725019 TTCAGAGAAGAAGCAATTATACAAGAA 57.275 29.630 0.00 0.00 0.00 2.52
1952 2556 9.896645 ATTCAGAGAAGAAGCAATTATACAAGA 57.103 29.630 0.00 0.00 0.00 3.02
1953 2557 9.932699 CATTCAGAGAAGAAGCAATTATACAAG 57.067 33.333 0.00 0.00 0.00 3.16
1954 2558 9.453572 ACATTCAGAGAAGAAGCAATTATACAA 57.546 29.630 0.00 0.00 0.00 2.41
1955 2559 9.102757 GACATTCAGAGAAGAAGCAATTATACA 57.897 33.333 0.00 0.00 0.00 2.29
1956 2560 9.102757 TGACATTCAGAGAAGAAGCAATTATAC 57.897 33.333 0.00 0.00 0.00 1.47
1957 2561 9.842775 ATGACATTCAGAGAAGAAGCAATTATA 57.157 29.630 0.00 0.00 0.00 0.98
1958 2562 8.749026 ATGACATTCAGAGAAGAAGCAATTAT 57.251 30.769 0.00 0.00 0.00 1.28
1959 2563 9.671279 TTATGACATTCAGAGAAGAAGCAATTA 57.329 29.630 0.00 0.00 0.00 1.40
1960 2564 8.571461 TTATGACATTCAGAGAAGAAGCAATT 57.429 30.769 0.00 0.00 0.00 2.32
1961 2565 8.749026 ATTATGACATTCAGAGAAGAAGCAAT 57.251 30.769 0.00 0.00 0.00 3.56
1962 2566 8.571461 AATTATGACATTCAGAGAAGAAGCAA 57.429 30.769 0.00 0.00 0.00 3.91
1963 2567 8.571461 AAATTATGACATTCAGAGAAGAAGCA 57.429 30.769 0.00 0.00 0.00 3.91
1964 2568 9.852091 AAAAATTATGACATTCAGAGAAGAAGC 57.148 29.630 0.00 0.00 0.00 3.86
1995 2604 9.643693 AAAGTTTGCATTAATAAGAGGTTCATG 57.356 29.630 0.00 0.00 0.00 3.07
2036 2649 7.663043 AGATTAAGAGGTTTAATCTCCGAGT 57.337 36.000 13.60 0.00 44.14 4.18
2039 2652 7.385478 GGCTTAGATTAAGAGGTTTAATCTCCG 59.615 40.741 19.73 14.60 44.14 4.63
2068 2681 6.683110 GCGGTTCAGTCTAGGAATTGAGATAA 60.683 42.308 0.00 0.00 0.00 1.75
2075 2688 2.678190 GCAGCGGTTCAGTCTAGGAATT 60.678 50.000 0.00 0.00 0.00 2.17
2118 2731 4.586421 TCAGTCTTGAGAGTCTGTTGTGAT 59.414 41.667 0.00 0.00 39.24 3.06
2119 2732 3.954258 TCAGTCTTGAGAGTCTGTTGTGA 59.046 43.478 0.00 0.00 39.24 3.58
2133 2751 7.373778 TGAAGTGATTTCATCATCAGTCTTG 57.626 36.000 0.00 0.00 40.82 3.02
2146 2771 4.154918 ACTTTGCTCCGATGAAGTGATTTC 59.845 41.667 0.00 0.00 36.29 2.17
2149 2774 3.340814 ACTTTGCTCCGATGAAGTGAT 57.659 42.857 0.00 0.00 31.59 3.06
2152 2777 3.744660 AGAAACTTTGCTCCGATGAAGT 58.255 40.909 0.00 0.00 34.03 3.01
2157 2782 4.083802 CGAGAAAAGAAACTTTGCTCCGAT 60.084 41.667 20.02 0.00 0.00 4.18
2165 2790 5.823045 ACCATGAGACGAGAAAAGAAACTTT 59.177 36.000 0.00 0.00 0.00 2.66
2373 3006 4.436998 GGCGGGTGTGTCTCTCGG 62.437 72.222 0.00 0.00 0.00 4.63
2403 3051 0.928229 CGTACTATGAACAAGGCGGC 59.072 55.000 0.00 0.00 0.00 6.53
2466 3120 4.440250 CGTTTCATCCCAGGTAGTACAGAG 60.440 50.000 2.06 0.00 0.00 3.35
2506 3160 4.054671 AGTCGCTTTAGATTAGCTGATGC 58.945 43.478 0.00 0.00 36.49 3.91
2508 3162 5.782893 AGAGTCGCTTTAGATTAGCTGAT 57.217 39.130 0.00 0.00 36.49 2.90
2523 3177 8.376203 CACTGCACATATATATAAAAGAGTCGC 58.624 37.037 0.00 0.00 0.00 5.19
2592 3251 1.067364 CACTGATTGGTGCTGCAACAA 59.933 47.619 32.47 32.47 45.40 2.83
2653 3316 1.145803 GTTCAGTAACGGGCAGTGAC 58.854 55.000 0.00 0.00 34.25 3.67
2655 3318 1.808411 ATGTTCAGTAACGGGCAGTG 58.192 50.000 0.00 0.00 38.53 3.66
2662 3325 1.194547 AGCGTGCAATGTTCAGTAACG 59.805 47.619 0.00 0.00 38.53 3.18
2698 3361 5.386958 AGTACAGTCTACAATCGCTTGAA 57.613 39.130 5.91 0.00 36.20 2.69
2712 3375 1.343075 TGGGATGGAGGGAGTACAGTC 60.343 57.143 0.00 0.00 0.00 3.51
2770 3433 8.786826 TCCGTCTCATAATGTAAGACATTTTT 57.213 30.769 9.92 0.00 45.80 1.94
2771 3434 8.041323 ACTCCGTCTCATAATGTAAGACATTTT 58.959 33.333 9.92 0.33 45.80 1.82
2772 3435 7.492669 CACTCCGTCTCATAATGTAAGACATTT 59.507 37.037 9.92 0.00 45.80 2.32
2774 3437 6.321435 TCACTCCGTCTCATAATGTAAGACAT 59.679 38.462 0.00 0.00 41.31 3.06
2775 3438 5.650703 TCACTCCGTCTCATAATGTAAGACA 59.349 40.000 0.00 0.00 39.49 3.41
2776 3439 6.132791 TCACTCCGTCTCATAATGTAAGAC 57.867 41.667 0.00 0.00 36.82 3.01
2777 3440 5.886474 ACTCACTCCGTCTCATAATGTAAGA 59.114 40.000 0.00 0.00 0.00 2.10
2778 3441 6.137794 ACTCACTCCGTCTCATAATGTAAG 57.862 41.667 0.00 0.00 0.00 2.34
2779 3442 7.634671 TTACTCACTCCGTCTCATAATGTAA 57.365 36.000 0.00 0.00 0.00 2.41
2780 3443 7.818997 ATTACTCACTCCGTCTCATAATGTA 57.181 36.000 0.00 0.00 0.00 2.29
2781 3444 6.716934 ATTACTCACTCCGTCTCATAATGT 57.283 37.500 0.00 0.00 0.00 2.71
2782 3445 9.698309 ATAAATTACTCACTCCGTCTCATAATG 57.302 33.333 0.00 0.00 0.00 1.90
2786 3449 9.915629 GATTATAAATTACTCACTCCGTCTCAT 57.084 33.333 0.00 0.00 0.00 2.90
2787 3450 9.132923 AGATTATAAATTACTCACTCCGTCTCA 57.867 33.333 0.00 0.00 0.00 3.27
2788 3451 9.400638 CAGATTATAAATTACTCACTCCGTCTC 57.599 37.037 0.00 0.00 0.00 3.36
2789 3452 7.868415 GCAGATTATAAATTACTCACTCCGTCT 59.132 37.037 0.00 0.00 0.00 4.18
2790 3453 7.652105 TGCAGATTATAAATTACTCACTCCGTC 59.348 37.037 0.00 0.00 0.00 4.79
2791 3454 7.497595 TGCAGATTATAAATTACTCACTCCGT 58.502 34.615 0.00 0.00 0.00 4.69
2792 3455 7.946655 TGCAGATTATAAATTACTCACTCCG 57.053 36.000 0.00 0.00 0.00 4.63
2793 3456 8.276325 CGTTGCAGATTATAAATTACTCACTCC 58.724 37.037 0.00 0.00 0.00 3.85
2794 3457 7.794349 GCGTTGCAGATTATAAATTACTCACTC 59.206 37.037 0.00 0.00 0.00 3.51
2795 3458 7.495934 AGCGTTGCAGATTATAAATTACTCACT 59.504 33.333 0.00 0.00 0.00 3.41
2796 3459 7.630924 AGCGTTGCAGATTATAAATTACTCAC 58.369 34.615 0.00 0.00 0.00 3.51
2797 3460 7.306574 CGAGCGTTGCAGATTATAAATTACTCA 60.307 37.037 0.00 0.00 0.00 3.41
2798 3461 7.004225 CGAGCGTTGCAGATTATAAATTACTC 58.996 38.462 0.00 0.00 0.00 2.59
2799 3462 6.479001 ACGAGCGTTGCAGATTATAAATTACT 59.521 34.615 0.00 0.00 0.00 2.24
2800 3463 6.570058 CACGAGCGTTGCAGATTATAAATTAC 59.430 38.462 0.00 0.00 0.00 1.89
2801 3464 6.477360 TCACGAGCGTTGCAGATTATAAATTA 59.523 34.615 0.00 0.00 0.00 1.40
2802 3465 5.293324 TCACGAGCGTTGCAGATTATAAATT 59.707 36.000 0.00 0.00 0.00 1.82
2819 3482 2.673368 CTCCCATTGTTACTTCACGAGC 59.327 50.000 0.00 0.00 0.00 5.03
2822 3485 2.356135 CCCTCCCATTGTTACTTCACG 58.644 52.381 0.00 0.00 0.00 4.35
2834 3497 6.101296 GTCGATATATTAAATCCCCCTCCCAT 59.899 42.308 0.00 0.00 0.00 4.00
2851 3515 7.043961 AGAAAGAGCATCAAGTGTCGATATA 57.956 36.000 0.00 0.00 37.82 0.86
2886 3550 2.535984 CGCAATGCTTAAGACCGTAGAG 59.464 50.000 6.67 0.00 0.00 2.43
2889 3553 2.658373 TCGCAATGCTTAAGACCGTA 57.342 45.000 6.67 0.00 0.00 4.02
2890 3554 1.732259 CTTCGCAATGCTTAAGACCGT 59.268 47.619 6.67 0.00 0.00 4.83
2894 3558 2.932614 GAGCTCTTCGCAATGCTTAAGA 59.067 45.455 15.69 15.69 42.61 2.10
2900 3564 2.477825 TCTATGAGCTCTTCGCAATGC 58.522 47.619 16.19 0.00 42.61 3.56
2914 3578 8.192774 GCAATGGATGAAGAAAACAATCTATGA 58.807 33.333 0.00 0.00 0.00 2.15
2918 3582 6.349243 TGCAATGGATGAAGAAAACAATCT 57.651 33.333 0.00 0.00 0.00 2.40
2936 3600 9.799106 AGCTACCAGAAAACTATAATATGCAAT 57.201 29.630 0.00 0.00 0.00 3.56
2952 3616 0.476338 TTGCCACCAAGCTACCAGAA 59.524 50.000 0.00 0.00 0.00 3.02
2956 3620 0.811281 GTCATTGCCACCAAGCTACC 59.189 55.000 0.00 0.00 33.80 3.18
2965 3629 3.406764 AGAGTTCTTCAGTCATTGCCAC 58.593 45.455 0.00 0.00 0.00 5.01
2980 3644 6.584563 GGATGAAGTAGCGATTGATAGAGTTC 59.415 42.308 0.00 0.00 0.00 3.01
2984 3648 4.082733 CCGGATGAAGTAGCGATTGATAGA 60.083 45.833 0.00 0.00 0.00 1.98
3007 3671 2.239907 AGGGAGGGTGCAGTTAATCTTC 59.760 50.000 0.00 0.00 0.00 2.87
3018 3682 3.155167 CGGGACTAGGGAGGGTGC 61.155 72.222 0.00 0.00 0.00 5.01
3019 3683 2.444140 CCGGGACTAGGGAGGGTG 60.444 72.222 0.00 0.00 0.00 4.61
3020 3684 2.564948 AACCGGGACTAGGGAGGGT 61.565 63.158 6.32 0.00 0.00 4.34
3021 3685 2.064581 CAACCGGGACTAGGGAGGG 61.065 68.421 6.32 0.00 0.00 4.30
3022 3686 1.305887 ACAACCGGGACTAGGGAGG 60.306 63.158 6.32 0.00 0.00 4.30
3025 3689 1.066645 GTAACACAACCGGGACTAGGG 60.067 57.143 6.32 0.00 0.00 3.53
3026 3690 1.403249 CGTAACACAACCGGGACTAGG 60.403 57.143 6.32 0.00 0.00 3.02
3027 3691 1.541147 TCGTAACACAACCGGGACTAG 59.459 52.381 6.32 0.00 0.00 2.57
3029 3693 0.752054 TTCGTAACACAACCGGGACT 59.248 50.000 6.32 0.00 0.00 3.85
3030 3694 0.861185 GTTCGTAACACAACCGGGAC 59.139 55.000 6.32 0.00 0.00 4.46
3031 3695 0.249826 GGTTCGTAACACAACCGGGA 60.250 55.000 6.32 0.00 33.01 5.14
3032 3696 0.532417 TGGTTCGTAACACAACCGGG 60.532 55.000 6.32 0.00 44.53 5.73
3034 3698 0.863144 CCTGGTTCGTAACACAACCG 59.137 55.000 0.00 0.00 44.53 4.44
3036 3700 2.830104 AGTCCTGGTTCGTAACACAAC 58.170 47.619 0.00 0.00 0.00 3.32
3038 3702 4.501915 CCTTTAGTCCTGGTTCGTAACACA 60.502 45.833 0.00 0.00 0.00 3.72
3039 3703 3.992427 CCTTTAGTCCTGGTTCGTAACAC 59.008 47.826 0.00 0.00 0.00 3.32
3040 3704 3.555586 GCCTTTAGTCCTGGTTCGTAACA 60.556 47.826 0.00 0.00 0.00 2.41
3043 3707 1.551883 GGCCTTTAGTCCTGGTTCGTA 59.448 52.381 0.00 0.00 0.00 3.43
3044 3708 0.323957 GGCCTTTAGTCCTGGTTCGT 59.676 55.000 0.00 0.00 0.00 3.85
3046 3710 0.992695 AGGGCCTTTAGTCCTGGTTC 59.007 55.000 0.00 0.00 0.00 3.62
3048 3712 0.914902 GGAGGGCCTTTAGTCCTGGT 60.915 60.000 7.89 0.00 0.00 4.00
3049 3713 0.914417 TGGAGGGCCTTTAGTCCTGG 60.914 60.000 7.89 0.00 34.31 4.45
3052 3716 0.919710 ATGTGGAGGGCCTTTAGTCC 59.080 55.000 7.89 4.32 34.31 3.85
3053 3717 1.408822 CCATGTGGAGGGCCTTTAGTC 60.409 57.143 7.89 0.00 37.39 2.59
3054 3718 0.625849 CCATGTGGAGGGCCTTTAGT 59.374 55.000 7.89 0.00 37.39 2.24
3055 3719 0.753111 GCCATGTGGAGGGCCTTTAG 60.753 60.000 7.89 0.00 43.69 1.85
3056 3720 1.306296 GCCATGTGGAGGGCCTTTA 59.694 57.895 7.89 0.00 43.69 1.85
3062 3726 4.864334 GAGCGGCCATGTGGAGGG 62.864 72.222 2.24 0.00 37.39 4.30
3063 3727 1.762522 ATAGAGCGGCCATGTGGAGG 61.763 60.000 2.24 0.00 37.39 4.30
3064 3728 0.602106 CATAGAGCGGCCATGTGGAG 60.602 60.000 2.24 0.00 37.39 3.86
3065 3729 1.447217 CATAGAGCGGCCATGTGGA 59.553 57.895 2.24 0.00 37.39 4.02
3066 3730 1.598962 CCATAGAGCGGCCATGTGG 60.599 63.158 2.24 0.00 38.53 4.17
3068 3732 1.750930 CTCCATAGAGCGGCCATGT 59.249 57.895 2.24 0.00 32.13 3.21
3083 3747 0.542333 GGGACTAAAGGTGGAGCTCC 59.458 60.000 26.78 26.78 0.00 4.70
3084 3748 0.175989 CGGGACTAAAGGTGGAGCTC 59.824 60.000 4.71 4.71 0.00 4.09
3085 3749 1.265454 CCGGGACTAAAGGTGGAGCT 61.265 60.000 0.00 0.00 0.00 4.09
3086 3750 1.221021 CCGGGACTAAAGGTGGAGC 59.779 63.158 0.00 0.00 0.00 4.70
3087 3751 0.981943 AACCGGGACTAAAGGTGGAG 59.018 55.000 6.32 0.00 38.44 3.86
3088 3752 0.688487 CAACCGGGACTAAAGGTGGA 59.312 55.000 6.32 0.00 38.44 4.02
3090 3754 0.958876 GGCAACCGGGACTAAAGGTG 60.959 60.000 6.32 0.00 38.44 4.00
3091 3755 1.377612 GGCAACCGGGACTAAAGGT 59.622 57.895 6.32 0.00 40.50 3.50
3093 3757 3.884900 CGGCAACCGGGACTAAAG 58.115 61.111 6.32 0.00 44.15 1.85
3103 3767 0.037160 TTCCTTTAGTCCCGGCAACC 59.963 55.000 0.00 0.00 0.00 3.77
3105 3769 2.891191 AATTCCTTTAGTCCCGGCAA 57.109 45.000 0.00 0.00 0.00 4.52
3106 3770 2.891191 AAATTCCTTTAGTCCCGGCA 57.109 45.000 0.00 0.00 0.00 5.69
3208 3872 7.147949 GGGTGATGAGAGATTGAATTGTCAAAT 60.148 37.037 0.00 0.00 46.66 2.32
3209 3873 6.151648 GGGTGATGAGAGATTGAATTGTCAAA 59.848 38.462 0.00 0.00 46.66 2.69
3211 3875 5.188434 GGGTGATGAGAGATTGAATTGTCA 58.812 41.667 0.00 0.00 0.00 3.58
3212 3876 5.065731 GTGGGTGATGAGAGATTGAATTGTC 59.934 44.000 0.00 0.00 0.00 3.18
3213 3877 4.946157 GTGGGTGATGAGAGATTGAATTGT 59.054 41.667 0.00 0.00 0.00 2.71
3215 3879 5.191323 AGAGTGGGTGATGAGAGATTGAATT 59.809 40.000 0.00 0.00 0.00 2.17
3216 3880 4.720773 AGAGTGGGTGATGAGAGATTGAAT 59.279 41.667 0.00 0.00 0.00 2.57
3217 3881 4.099633 AGAGTGGGTGATGAGAGATTGAA 58.900 43.478 0.00 0.00 0.00 2.69
3219 3883 5.604758 TTAGAGTGGGTGATGAGAGATTG 57.395 43.478 0.00 0.00 0.00 2.67
3220 3884 5.901853 TGATTAGAGTGGGTGATGAGAGATT 59.098 40.000 0.00 0.00 0.00 2.40
3221 3885 5.462240 TGATTAGAGTGGGTGATGAGAGAT 58.538 41.667 0.00 0.00 0.00 2.75
3222 3886 4.871822 TGATTAGAGTGGGTGATGAGAGA 58.128 43.478 0.00 0.00 0.00 3.10
3225 4211 4.592351 AGGATGATTAGAGTGGGTGATGAG 59.408 45.833 0.00 0.00 0.00 2.90
3227 4213 4.970860 AGGATGATTAGAGTGGGTGATG 57.029 45.455 0.00 0.00 0.00 3.07
3229 4215 4.361783 TGAAGGATGATTAGAGTGGGTGA 58.638 43.478 0.00 0.00 0.00 4.02
3231 4217 4.971282 TGATGAAGGATGATTAGAGTGGGT 59.029 41.667 0.00 0.00 0.00 4.51
3238 4224 5.608449 TGAGCAGTGATGAAGGATGATTAG 58.392 41.667 0.00 0.00 0.00 1.73
3239 4225 5.619132 TGAGCAGTGATGAAGGATGATTA 57.381 39.130 0.00 0.00 0.00 1.75
3245 4231 5.993055 TCATAATTGAGCAGTGATGAAGGA 58.007 37.500 0.00 0.00 0.00 3.36
3247 4233 6.094464 TGGTTCATAATTGAGCAGTGATGAAG 59.906 38.462 6.13 0.00 34.81 3.02
3249 4235 5.355071 GTGGTTCATAATTGAGCAGTGATGA 59.645 40.000 0.00 0.00 34.98 2.92
3251 4237 5.503927 AGTGGTTCATAATTGAGCAGTGAT 58.496 37.500 0.00 0.00 34.98 3.06
3255 4241 7.067372 TGGAATAAGTGGTTCATAATTGAGCAG 59.933 37.037 0.00 0.00 34.98 4.24
3256 4242 6.889177 TGGAATAAGTGGTTCATAATTGAGCA 59.111 34.615 0.00 0.00 34.98 4.26
3257 4243 7.333528 TGGAATAAGTGGTTCATAATTGAGC 57.666 36.000 0.00 0.00 32.27 4.26
3260 4246 9.236691 CGATTTGGAATAAGTGGTTCATAATTG 57.763 33.333 0.00 0.00 0.00 2.32
3261 4247 8.966868 ACGATTTGGAATAAGTGGTTCATAATT 58.033 29.630 0.00 0.00 0.00 1.40
3262 4248 8.405531 CACGATTTGGAATAAGTGGTTCATAAT 58.594 33.333 0.00 0.00 0.00 1.28
3263 4249 7.392113 ACACGATTTGGAATAAGTGGTTCATAA 59.608 33.333 0.00 0.00 34.28 1.90
3264 4250 6.882140 ACACGATTTGGAATAAGTGGTTCATA 59.118 34.615 0.00 0.00 34.28 2.15
3265 4251 5.710099 ACACGATTTGGAATAAGTGGTTCAT 59.290 36.000 0.00 0.00 34.28 2.57
3268 4254 6.713450 AGTTACACGATTTGGAATAAGTGGTT 59.287 34.615 0.00 0.00 34.28 3.67
3269 4255 6.235664 AGTTACACGATTTGGAATAAGTGGT 58.764 36.000 0.00 0.00 34.28 4.16
3271 4257 6.953743 CGAAGTTACACGATTTGGAATAAGTG 59.046 38.462 0.00 7.00 27.70 3.16
3272 4258 6.401796 GCGAAGTTACACGATTTGGAATAAGT 60.402 38.462 6.22 0.00 27.70 2.24
3273 4259 5.957796 GCGAAGTTACACGATTTGGAATAAG 59.042 40.000 6.22 0.00 27.70 1.73
3274 4260 5.408909 TGCGAAGTTACACGATTTGGAATAA 59.591 36.000 6.22 0.00 27.70 1.40
3275 4261 4.930405 TGCGAAGTTACACGATTTGGAATA 59.070 37.500 6.22 0.00 27.70 1.75
3278 4264 2.734606 CTGCGAAGTTACACGATTTGGA 59.265 45.455 6.22 0.00 0.00 3.53
3280 4266 2.495939 GCTGCGAAGTTACACGATTTG 58.504 47.619 6.22 0.00 0.00 2.32
3281 4267 1.463444 GGCTGCGAAGTTACACGATTT 59.537 47.619 6.22 0.00 0.00 2.17
3283 4269 1.076533 CGGCTGCGAAGTTACACGAT 61.077 55.000 6.22 0.00 0.00 3.73
3285 4271 2.726691 CCGGCTGCGAAGTTACACG 61.727 63.158 0.00 0.00 0.00 4.49
3286 4272 1.623973 GACCGGCTGCGAAGTTACAC 61.624 60.000 0.00 0.00 0.00 2.90
3287 4273 1.373748 GACCGGCTGCGAAGTTACA 60.374 57.895 0.00 0.00 0.00 2.41
3289 4275 1.373748 GTGACCGGCTGCGAAGTTA 60.374 57.895 0.00 0.00 0.00 2.24
3291 4277 4.681978 GGTGACCGGCTGCGAAGT 62.682 66.667 0.00 0.00 0.00 3.01
3303 4289 2.691011 GAGTAGTGAGAGGATGGGTGAC 59.309 54.545 0.00 0.00 0.00 3.67
3304 4290 2.358300 GGAGTAGTGAGAGGATGGGTGA 60.358 54.545 0.00 0.00 0.00 4.02
3305 4291 2.035632 GGAGTAGTGAGAGGATGGGTG 58.964 57.143 0.00 0.00 0.00 4.61
3306 4292 1.646447 TGGAGTAGTGAGAGGATGGGT 59.354 52.381 0.00 0.00 0.00 4.51
3307 4293 2.315176 CTGGAGTAGTGAGAGGATGGG 58.685 57.143 0.00 0.00 0.00 4.00
3309 4295 3.631686 CAGACTGGAGTAGTGAGAGGATG 59.368 52.174 0.00 0.00 40.53 3.51
3310 4296 3.525609 TCAGACTGGAGTAGTGAGAGGAT 59.474 47.826 1.81 0.00 40.53 3.24
3311 4297 2.913617 TCAGACTGGAGTAGTGAGAGGA 59.086 50.000 1.81 0.00 40.53 3.71
3312 4298 3.278574 CTCAGACTGGAGTAGTGAGAGG 58.721 54.545 1.81 0.00 40.53 3.69
3313 4299 2.682856 GCTCAGACTGGAGTAGTGAGAG 59.317 54.545 17.30 6.95 40.53 3.20
3314 4300 2.040412 TGCTCAGACTGGAGTAGTGAGA 59.960 50.000 17.30 5.42 40.53 3.27
3315 4301 2.441410 TGCTCAGACTGGAGTAGTGAG 58.559 52.381 1.81 11.77 40.53 3.51
3316 4302 2.586648 TGCTCAGACTGGAGTAGTGA 57.413 50.000 1.81 0.00 40.53 3.41
3317 4303 2.738000 GCATGCTCAGACTGGAGTAGTG 60.738 54.545 11.37 0.00 40.53 2.74
3318 4304 1.480137 GCATGCTCAGACTGGAGTAGT 59.520 52.381 11.37 0.00 44.02 2.73
3319 4305 1.755959 AGCATGCTCAGACTGGAGTAG 59.244 52.381 16.30 0.00 37.24 2.57
3321 4307 0.982704 AAGCATGCTCAGACTGGAGT 59.017 50.000 22.93 0.00 37.24 3.85
3322 4308 2.975732 TAAGCATGCTCAGACTGGAG 57.024 50.000 22.93 0.34 37.97 3.86
3324 4310 2.983229 ACTTAAGCATGCTCAGACTGG 58.017 47.619 26.18 13.73 0.00 4.00
3325 4311 5.049198 TCAAAACTTAAGCATGCTCAGACTG 60.049 40.000 26.18 19.52 0.00 3.51
3326 4312 5.065914 TCAAAACTTAAGCATGCTCAGACT 58.934 37.500 26.18 12.89 0.00 3.24
3327 4313 5.049129 ACTCAAAACTTAAGCATGCTCAGAC 60.049 40.000 26.18 0.00 0.00 3.51
3328 4314 5.065914 ACTCAAAACTTAAGCATGCTCAGA 58.934 37.500 26.18 12.18 0.00 3.27
3329 4315 5.368256 ACTCAAAACTTAAGCATGCTCAG 57.632 39.130 22.93 21.36 0.00 3.35
3330 4316 5.532406 AGAACTCAAAACTTAAGCATGCTCA 59.468 36.000 22.93 2.34 0.00 4.26
3332 4318 7.693969 ATAGAACTCAAAACTTAAGCATGCT 57.306 32.000 16.30 16.30 0.00 3.79
3333 4319 7.486232 GGAATAGAACTCAAAACTTAAGCATGC 59.514 37.037 10.51 10.51 0.00 4.06
3334 4320 7.970614 GGGAATAGAACTCAAAACTTAAGCATG 59.029 37.037 1.29 0.00 0.00 4.06
3336 4322 6.433093 GGGGAATAGAACTCAAAACTTAAGCA 59.567 38.462 1.29 0.00 0.00 3.91
3337 4323 6.127703 GGGGGAATAGAACTCAAAACTTAAGC 60.128 42.308 1.29 0.00 0.00 3.09
3338 4324 7.392494 GGGGGAATAGAACTCAAAACTTAAG 57.608 40.000 0.00 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.