Multiple sequence alignment - TraesCS2B01G115100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G115100 chr2B 100.000 3025 0 0 1 3025 78105261 78102237 0.000000e+00 5587.0
1 TraesCS2B01G115100 chr2B 80.895 827 79 30 1111 1900 78812135 78811351 2.020000e-161 579.0
2 TraesCS2B01G115100 chr2B 79.538 865 94 46 1061 1881 78414215 78413390 9.540000e-150 540.0
3 TraesCS2B01G115100 chr2B 77.216 970 94 57 971 1900 579797149 579796267 1.650000e-122 449.0
4 TraesCS2B01G115100 chr2A 83.592 1743 129 63 965 2644 52009637 52007989 0.000000e+00 1489.0
5 TraesCS2B01G115100 chr2A 88.531 497 37 12 17 500 52010687 52010198 4.350000e-163 584.0
6 TraesCS2B01G115100 chr2A 98.371 307 4 1 2644 2950 306176196 306176501 3.430000e-149 538.0
7 TraesCS2B01G115100 chr2A 85.033 461 32 11 1 460 44238027 44237603 4.630000e-118 435.0
8 TraesCS2B01G115100 chr2A 84.559 408 32 17 1481 1874 52072623 52072233 2.850000e-100 375.0
9 TraesCS2B01G115100 chr2A 80.769 364 31 22 2303 2644 44210206 44209860 6.480000e-62 248.0
10 TraesCS2B01G115100 chr2A 83.951 243 23 14 732 960 52009923 52009683 5.080000e-53 219.0
11 TraesCS2B01G115100 chr2A 92.254 142 9 1 512 653 52010150 52010011 1.840000e-47 200.0
12 TraesCS2B01G115100 chr2A 90.789 76 6 1 516 591 44237512 44237438 1.920000e-17 100.0
13 TraesCS2B01G115100 chr2A 100.000 29 0 0 2980 3008 44209266 44209238 2.000000e-03 54.7
14 TraesCS2B01G115100 chr2D 83.003 1565 133 58 1053 2570 39199769 39201247 0.000000e+00 1293.0
15 TraesCS2B01G115100 chr2D 86.040 1139 84 33 966 2067 50343470 50342370 0.000000e+00 1153.0
16 TraesCS2B01G115100 chr2D 90.269 483 24 11 498 960 50343999 50343520 7.170000e-171 610.0
17 TraesCS2B01G115100 chr2D 85.714 504 33 15 1 500 50344501 50344033 2.090000e-136 496.0
18 TraesCS2B01G115100 chr2D 90.566 212 10 7 529 740 39169334 39169535 3.840000e-69 272.0
19 TraesCS2B01G115100 chr2D 82.906 351 13 15 2303 2644 50342015 50341703 3.840000e-69 272.0
20 TraesCS2B01G115100 chr2D 91.045 201 12 3 1 201 39165529 39165723 1.790000e-67 267.0
21 TraesCS2B01G115100 chr2D 84.706 255 10 9 731 956 39170752 39171006 8.440000e-56 228.0
22 TraesCS2B01G115100 chr2D 81.973 294 26 12 1609 1887 50405197 50404916 1.090000e-54 224.0
23 TraesCS2B01G115100 chr2D 92.414 145 11 0 305 449 39166365 39166509 1.100000e-49 207.0
24 TraesCS2B01G115100 chr2D 94.915 59 3 0 2950 3008 39201358 39201416 3.210000e-15 93.5
25 TraesCS2B01G115100 chr1A 98.377 308 4 1 2643 2950 354954301 354954607 9.540000e-150 540.0
26 TraesCS2B01G115100 chr5A 96.825 315 9 1 2641 2955 1838641 1838954 2.670000e-145 525.0
27 TraesCS2B01G115100 chr5A 95.570 316 12 1 2638 2953 708527498 708527185 3.480000e-139 505.0
28 TraesCS2B01G115100 chr6A 95.706 326 13 1 2633 2958 297643729 297644053 9.610000e-145 523.0
29 TraesCS2B01G115100 chr7A 97.068 307 8 1 2640 2946 215187669 215187974 1.610000e-142 516.0
30 TraesCS2B01G115100 chr4A 95.860 314 12 1 2640 2953 57414023 57414335 9.680000e-140 507.0
31 TraesCS2B01G115100 chr4A 94.753 324 15 2 2627 2950 595849422 595849101 1.250000e-138 503.0
32 TraesCS2B01G115100 chr4D 95.016 321 13 3 2640 2958 43651710 43651391 4.500000e-138 501.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G115100 chr2B 78102237 78105261 3024 True 5587.00 5587 100.00000 1 3025 1 chr2B.!!$R1 3024
1 TraesCS2B01G115100 chr2B 78811351 78812135 784 True 579.00 579 80.89500 1111 1900 1 chr2B.!!$R3 789
2 TraesCS2B01G115100 chr2B 78413390 78414215 825 True 540.00 540 79.53800 1061 1881 1 chr2B.!!$R2 820
3 TraesCS2B01G115100 chr2B 579796267 579797149 882 True 449.00 449 77.21600 971 1900 1 chr2B.!!$R4 929
4 TraesCS2B01G115100 chr2A 52007989 52010687 2698 True 623.00 1489 87.08200 17 2644 4 chr2A.!!$R4 2627
5 TraesCS2B01G115100 chr2A 44237438 44238027 589 True 267.50 435 87.91100 1 591 2 chr2A.!!$R3 590
6 TraesCS2B01G115100 chr2D 39199769 39201416 1647 False 693.25 1293 88.95900 1053 3008 2 chr2D.!!$F2 1955
7 TraesCS2B01G115100 chr2D 50341703 50344501 2798 True 632.75 1153 86.23225 1 2644 4 chr2D.!!$R2 2643
8 TraesCS2B01G115100 chr2D 39165529 39171006 5477 False 243.50 272 89.68275 1 956 4 chr2D.!!$F1 955

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
524 3943 0.158096 CTCGAACACAACGCACGTAC 59.842 55.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2153 7077 0.171455 CACGTAGCTCCAGTCCAGAC 59.829 60.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 69 2.661566 CGACTGCTTGACCGCACAG 61.662 63.158 0.00 0.00 35.74 3.66
64 70 2.959357 GACTGCTTGACCGCACAGC 61.959 63.158 0.00 0.00 35.74 4.40
65 71 2.974148 CTGCTTGACCGCACAGCA 60.974 61.111 0.00 0.00 36.50 4.41
66 72 3.245948 CTGCTTGACCGCACAGCAC 62.246 63.158 0.00 0.00 35.08 4.40
67 73 3.279116 GCTTGACCGCACAGCACA 61.279 61.111 0.00 0.00 32.24 4.57
85 91 3.016031 CACACGGATGAAATGGATGGAA 58.984 45.455 0.00 0.00 0.00 3.53
119 126 1.886542 GGGAGTAACTTTGGTTGCCTG 59.113 52.381 0.00 0.00 38.52 4.85
121 128 2.956333 GGAGTAACTTTGGTTGCCTGTT 59.044 45.455 0.00 0.00 38.52 3.16
201 208 1.591248 CTTGTTCGTGCGTGCATTAC 58.409 50.000 0.00 0.00 0.00 1.89
203 210 1.222300 TGTTCGTGCGTGCATTACTT 58.778 45.000 0.00 0.00 0.00 2.24
206 499 3.433957 TGTTCGTGCGTGCATTACTTTAT 59.566 39.130 0.00 0.00 0.00 1.40
208 501 2.280445 TCGTGCGTGCATTACTTTATCG 59.720 45.455 0.00 0.00 0.00 2.92
229 522 2.854777 GCTCTCGCATTACACACAGTAG 59.145 50.000 0.00 0.00 33.01 2.57
230 523 3.673594 GCTCTCGCATTACACACAGTAGT 60.674 47.826 0.00 0.00 33.01 2.73
231 524 4.438336 GCTCTCGCATTACACACAGTAGTA 60.438 45.833 0.00 0.00 33.01 1.82
232 525 4.978186 TCTCGCATTACACACAGTAGTAC 58.022 43.478 0.00 0.00 33.43 2.73
275 866 7.548196 ACTTTTGTTGAGAAGTTCGTGATAA 57.452 32.000 0.00 0.00 32.43 1.75
276 867 8.154649 ACTTTTGTTGAGAAGTTCGTGATAAT 57.845 30.769 0.00 0.00 32.43 1.28
277 868 8.070171 ACTTTTGTTGAGAAGTTCGTGATAATG 58.930 33.333 0.00 0.00 32.43 1.90
278 869 7.490962 TTTGTTGAGAAGTTCGTGATAATGT 57.509 32.000 0.00 0.00 0.00 2.71
279 870 7.490962 TTGTTGAGAAGTTCGTGATAATGTT 57.509 32.000 0.00 0.00 0.00 2.71
280 871 8.596271 TTGTTGAGAAGTTCGTGATAATGTTA 57.404 30.769 0.00 0.00 0.00 2.41
281 872 8.596271 TGTTGAGAAGTTCGTGATAATGTTAA 57.404 30.769 0.00 0.00 0.00 2.01
282 873 8.708742 TGTTGAGAAGTTCGTGATAATGTTAAG 58.291 33.333 0.00 0.00 0.00 1.85
283 874 7.290857 TGAGAAGTTCGTGATAATGTTAAGC 57.709 36.000 0.00 0.00 0.00 3.09
284 875 6.871492 TGAGAAGTTCGTGATAATGTTAAGCA 59.129 34.615 0.00 0.00 0.00 3.91
285 876 7.386573 TGAGAAGTTCGTGATAATGTTAAGCAA 59.613 33.333 0.00 0.00 0.00 3.91
286 877 8.094798 AGAAGTTCGTGATAATGTTAAGCAAA 57.905 30.769 0.00 0.00 0.00 3.68
287 878 8.230486 AGAAGTTCGTGATAATGTTAAGCAAAG 58.770 33.333 0.00 0.00 0.00 2.77
288 879 6.314784 AGTTCGTGATAATGTTAAGCAAAGC 58.685 36.000 0.00 0.00 0.00 3.51
289 880 5.871465 TCGTGATAATGTTAAGCAAAGCA 57.129 34.783 0.00 0.00 0.00 3.91
290 881 5.868257 TCGTGATAATGTTAAGCAAAGCAG 58.132 37.500 0.00 0.00 0.00 4.24
291 882 5.411361 TCGTGATAATGTTAAGCAAAGCAGT 59.589 36.000 0.00 0.00 0.00 4.40
292 883 5.509272 CGTGATAATGTTAAGCAAAGCAGTG 59.491 40.000 0.00 0.00 0.00 3.66
293 884 5.801947 GTGATAATGTTAAGCAAAGCAGTGG 59.198 40.000 0.00 0.00 0.00 4.00
294 885 3.665745 AATGTTAAGCAAAGCAGTGGG 57.334 42.857 0.00 0.00 0.00 4.61
295 886 0.673437 TGTTAAGCAAAGCAGTGGGC 59.327 50.000 0.00 0.00 45.30 5.36
384 1011 2.044650 TACACGAGGGGGACGAGG 60.045 66.667 0.00 0.00 34.70 4.63
515 3934 0.874175 CGGTCACTGCTCGAACACAA 60.874 55.000 0.00 0.00 0.00 3.33
516 3935 0.582005 GGTCACTGCTCGAACACAAC 59.418 55.000 0.00 0.00 0.00 3.32
522 3941 2.867091 GCTCGAACACAACGCACGT 61.867 57.895 0.00 0.00 0.00 4.49
523 3942 1.542272 GCTCGAACACAACGCACGTA 61.542 55.000 0.00 0.00 0.00 3.57
524 3943 0.158096 CTCGAACACAACGCACGTAC 59.842 55.000 0.00 0.00 0.00 3.67
525 3944 0.525029 TCGAACACAACGCACGTACA 60.525 50.000 0.00 0.00 0.00 2.90
526 3945 0.505231 CGAACACAACGCACGTACAT 59.495 50.000 0.00 0.00 0.00 2.29
527 3946 1.714990 CGAACACAACGCACGTACATA 59.285 47.619 0.00 0.00 0.00 2.29
675 4107 2.863153 GCGCGCTTGAGATGTTGT 59.137 55.556 26.67 0.00 0.00 3.32
787 5487 3.443045 CGCAGGCCACATGGTTCC 61.443 66.667 5.01 0.00 37.57 3.62
808 5514 2.126071 CTGTGTGCGTAGACGGGG 60.126 66.667 1.40 0.00 40.23 5.73
809 5515 3.642778 CTGTGTGCGTAGACGGGGG 62.643 68.421 1.40 0.00 40.23 5.40
1082 5855 0.313987 TCCTGTACTGCACTCACACG 59.686 55.000 0.00 0.00 0.00 4.49
1086 5859 0.039074 GTACTGCACTCACACGAGCT 60.039 55.000 0.00 0.00 43.66 4.09
1129 5921 3.675467 AACTTTGAACGTGCTTCAGTC 57.325 42.857 0.00 0.00 40.12 3.51
1133 5925 0.318699 TGAACGTGCTTCAGTCCTCG 60.319 55.000 0.00 0.00 33.65 4.63
1637 6497 2.620112 GCTCATGGTGCAGCACGTT 61.620 57.895 22.79 1.98 34.83 3.99
1650 6510 3.297620 ACGTTACCGGCGTCCAGT 61.298 61.111 6.01 0.00 38.23 4.00
1900 6805 1.906994 CTCTAGCCGATCGAGCTCCG 61.907 65.000 27.01 20.48 41.83 4.63
1905 6810 1.153823 CCGATCGAGCTCCGTGTTT 60.154 57.895 18.66 0.00 39.75 2.83
1928 6833 7.894753 TTTCCATGCATTATTAACCATGAGA 57.105 32.000 15.33 10.43 37.78 3.27
1929 6834 7.514784 TTCCATGCATTATTAACCATGAGAG 57.485 36.000 15.33 4.92 37.78 3.20
1930 6835 6.604171 TCCATGCATTATTAACCATGAGAGT 58.396 36.000 15.33 0.00 37.78 3.24
1931 6836 7.744733 TCCATGCATTATTAACCATGAGAGTA 58.255 34.615 15.33 0.00 37.78 2.59
1932 6837 7.879677 TCCATGCATTATTAACCATGAGAGTAG 59.120 37.037 15.33 3.98 37.78 2.57
1934 6839 5.997746 TGCATTATTAACCATGAGAGTAGGC 59.002 40.000 0.00 0.00 0.00 3.93
1935 6840 5.412904 GCATTATTAACCATGAGAGTAGGCC 59.587 44.000 0.00 0.00 0.00 5.19
1936 6841 6.533730 CATTATTAACCATGAGAGTAGGCCA 58.466 40.000 5.01 0.00 0.00 5.36
1937 6842 4.696479 ATTAACCATGAGAGTAGGCCAG 57.304 45.455 5.01 0.00 0.00 4.85
1938 6843 1.207791 AACCATGAGAGTAGGCCAGG 58.792 55.000 5.01 0.00 0.00 4.45
1939 6844 0.339859 ACCATGAGAGTAGGCCAGGA 59.660 55.000 5.01 0.00 0.00 3.86
1940 6845 1.047002 CCATGAGAGTAGGCCAGGAG 58.953 60.000 5.01 0.00 0.00 3.69
1941 6846 0.392336 CATGAGAGTAGGCCAGGAGC 59.608 60.000 5.01 0.00 42.60 4.70
2040 6959 7.708998 TGTATTTTTCCACTTTTTAGTCGCTT 58.291 30.769 0.00 0.00 0.00 4.68
2042 6961 5.821516 TTTTCCACTTTTTAGTCGCTTGA 57.178 34.783 0.00 0.00 0.00 3.02
2045 6964 4.894784 TCCACTTTTTAGTCGCTTGATCT 58.105 39.130 0.00 0.00 0.00 2.75
2053 6972 9.684448 CTTTTTAGTCGCTTGATCTATCTATCA 57.316 33.333 0.00 0.00 34.07 2.15
2055 6974 9.847706 TTTTAGTCGCTTGATCTATCTATCATC 57.152 33.333 0.00 0.00 35.84 2.92
2057 6976 5.948758 AGTCGCTTGATCTATCTATCATCCA 59.051 40.000 0.00 0.00 35.84 3.41
2058 6977 6.606796 AGTCGCTTGATCTATCTATCATCCAT 59.393 38.462 0.00 0.00 35.84 3.41
2059 6978 6.917477 GTCGCTTGATCTATCTATCATCCATC 59.083 42.308 0.00 0.00 35.84 3.51
2060 6979 6.040278 TCGCTTGATCTATCTATCATCCATCC 59.960 42.308 0.00 0.00 35.84 3.51
2063 6982 7.672122 TTGATCTATCTATCATCCATCCCAG 57.328 40.000 0.00 0.00 35.84 4.45
2067 6986 2.925253 TCTATCATCCATCCCAGCCAT 58.075 47.619 0.00 0.00 0.00 4.40
2070 6989 0.698542 TCATCCATCCCAGCCATCCA 60.699 55.000 0.00 0.00 0.00 3.41
2071 6990 0.251209 CATCCATCCCAGCCATCCAG 60.251 60.000 0.00 0.00 0.00 3.86
2072 6991 2.077842 ATCCATCCCAGCCATCCAGC 62.078 60.000 0.00 0.00 0.00 4.85
2073 6992 2.203451 CATCCCAGCCATCCAGCC 60.203 66.667 0.00 0.00 0.00 4.85
2074 6993 2.697263 ATCCCAGCCATCCAGCCA 60.697 61.111 0.00 0.00 0.00 4.75
2075 6994 2.764737 ATCCCAGCCATCCAGCCAG 61.765 63.158 0.00 0.00 0.00 4.85
2076 6995 4.517934 CCCAGCCATCCAGCCAGG 62.518 72.222 0.00 0.00 39.47 4.45
2077 6996 4.517934 CCAGCCATCCAGCCAGGG 62.518 72.222 0.00 0.00 38.24 4.45
2078 6997 4.517934 CAGCCATCCAGCCAGGGG 62.518 72.222 0.00 0.00 38.24 4.79
2079 6998 4.765970 AGCCATCCAGCCAGGGGA 62.766 66.667 0.00 0.00 39.14 4.81
2080 6999 3.743017 GCCATCCAGCCAGGGGAA 61.743 66.667 0.00 0.00 38.09 3.97
2081 7000 3.099171 CCATCCAGCCAGGGGAAA 58.901 61.111 0.00 0.00 38.09 3.13
2082 7001 1.076485 CCATCCAGCCAGGGGAAAG 60.076 63.158 0.00 0.00 38.09 2.62
2083 7002 1.076485 CATCCAGCCAGGGGAAAGG 60.076 63.158 0.00 0.00 38.09 3.11
2084 7003 1.230281 ATCCAGCCAGGGGAAAGGA 60.230 57.895 0.00 0.00 38.09 3.36
2085 7004 0.850883 ATCCAGCCAGGGGAAAGGAA 60.851 55.000 0.00 0.00 38.09 3.36
2086 7005 1.071314 TCCAGCCAGGGGAAAGGAAA 61.071 55.000 0.00 0.00 38.24 3.13
2087 7006 0.178935 CCAGCCAGGGGAAAGGAAAA 60.179 55.000 0.00 0.00 0.00 2.29
2088 7007 0.969149 CAGCCAGGGGAAAGGAAAAC 59.031 55.000 0.00 0.00 0.00 2.43
2089 7008 0.560688 AGCCAGGGGAAAGGAAAACA 59.439 50.000 0.00 0.00 0.00 2.83
2090 7009 0.679505 GCCAGGGGAAAGGAAAACAC 59.320 55.000 0.00 0.00 0.00 3.32
2091 7010 1.338107 CCAGGGGAAAGGAAAACACC 58.662 55.000 0.00 0.00 0.00 4.16
2092 7011 1.412361 CCAGGGGAAAGGAAAACACCA 60.412 52.381 0.00 0.00 0.00 4.17
2093 7012 2.393646 CAGGGGAAAGGAAAACACCAA 58.606 47.619 0.00 0.00 0.00 3.67
2094 7013 2.769095 CAGGGGAAAGGAAAACACCAAA 59.231 45.455 0.00 0.00 0.00 3.28
2139 7063 1.876714 CACCGTAATCGACCAGCGG 60.877 63.158 15.03 15.03 46.83 5.52
2140 7064 2.960129 CCGTAATCGACCAGCGGC 60.960 66.667 6.61 0.00 41.33 6.53
2141 7065 2.202690 CGTAATCGACCAGCGGCA 60.203 61.111 1.45 0.00 41.33 5.69
2142 7066 2.514013 CGTAATCGACCAGCGGCAC 61.514 63.158 1.45 0.00 41.33 5.01
2143 7067 1.447140 GTAATCGACCAGCGGCACA 60.447 57.895 1.45 0.00 41.33 4.57
2144 7068 0.810031 GTAATCGACCAGCGGCACAT 60.810 55.000 1.45 0.00 41.33 3.21
2145 7069 0.809636 TAATCGACCAGCGGCACATG 60.810 55.000 1.45 0.00 41.33 3.21
2146 7070 2.803155 AATCGACCAGCGGCACATGT 62.803 55.000 1.45 0.00 41.33 3.21
2148 7072 2.669569 GACCAGCGGCACATGTGT 60.670 61.111 26.01 5.10 0.00 3.72
2189 7117 1.195448 CGTGTACGTAGTTGGACGACT 59.805 52.381 0.00 0.00 45.82 4.18
2230 7158 3.635268 CTGCCCTGGCTTCTGGTCC 62.635 68.421 9.97 0.00 42.51 4.46
2231 7159 4.785453 GCCCTGGCTTCTGGTCCG 62.785 72.222 0.00 0.00 38.26 4.79
2232 7160 3.322466 CCCTGGCTTCTGGTCCGT 61.322 66.667 0.00 0.00 0.00 4.69
2233 7161 1.987855 CCCTGGCTTCTGGTCCGTA 60.988 63.158 0.00 0.00 0.00 4.02
2285 7233 0.172803 ACTCGTGCCGTTCCAGTATC 59.827 55.000 0.00 0.00 0.00 2.24
2286 7234 0.866061 CTCGTGCCGTTCCAGTATCG 60.866 60.000 0.00 0.00 0.00 2.92
2287 7235 1.153901 CGTGCCGTTCCAGTATCGT 60.154 57.895 0.00 0.00 0.00 3.73
2288 7236 0.734942 CGTGCCGTTCCAGTATCGTT 60.735 55.000 0.00 0.00 0.00 3.85
2289 7237 0.997196 GTGCCGTTCCAGTATCGTTC 59.003 55.000 0.00 0.00 0.00 3.95
2291 7239 2.093890 TGCCGTTCCAGTATCGTTCTA 58.906 47.619 0.00 0.00 0.00 2.10
2292 7240 2.098607 TGCCGTTCCAGTATCGTTCTAG 59.901 50.000 0.00 0.00 0.00 2.43
2294 7242 2.543238 CCGTTCCAGTATCGTTCTAGGC 60.543 54.545 0.00 0.00 0.00 3.93
2295 7243 2.358267 CGTTCCAGTATCGTTCTAGGCT 59.642 50.000 0.00 0.00 0.00 4.58
2296 7244 3.181489 CGTTCCAGTATCGTTCTAGGCTT 60.181 47.826 0.00 0.00 0.00 4.35
2298 7246 2.957006 TCCAGTATCGTTCTAGGCTTCC 59.043 50.000 0.00 0.00 0.00 3.46
2299 7247 2.693591 CCAGTATCGTTCTAGGCTTCCA 59.306 50.000 0.00 0.00 0.00 3.53
2313 7388 2.616510 GGCTTCCAGCTTCTAGAAAGCA 60.617 50.000 20.58 4.82 45.30 3.91
2321 7396 1.836999 TTCTAGAAAGCAGCCGGGCA 61.837 55.000 23.09 0.00 35.83 5.36
2322 7397 1.377202 CTAGAAAGCAGCCGGGCAA 60.377 57.895 23.09 0.00 35.83 4.52
2437 7538 2.261361 CGGTCGCAGATGGTGTGA 59.739 61.111 0.00 0.00 43.66 3.58
2446 7547 1.079543 GATGGTGTGAGCTGCTCGT 60.080 57.895 23.35 2.42 32.35 4.18
2479 7581 4.515191 TCGAGATTTGGTTTGGTTTGAGAG 59.485 41.667 0.00 0.00 0.00 3.20
2480 7582 4.515191 CGAGATTTGGTTTGGTTTGAGAGA 59.485 41.667 0.00 0.00 0.00 3.10
2578 7685 2.479566 TGATTTGAGCTCCACTGACC 57.520 50.000 12.15 0.00 0.00 4.02
2579 7686 1.699083 TGATTTGAGCTCCACTGACCA 59.301 47.619 12.15 0.00 0.00 4.02
2581 7688 1.131638 TTTGAGCTCCACTGACCACT 58.868 50.000 12.15 0.00 0.00 4.00
2582 7689 0.394192 TTGAGCTCCACTGACCACTG 59.606 55.000 12.15 0.00 0.00 3.66
2583 7690 1.294780 GAGCTCCACTGACCACTGG 59.705 63.158 0.87 0.00 0.00 4.00
2603 7710 5.317733 TGGCGTACCAATCAAAATTTAGG 57.682 39.130 0.00 0.00 45.37 2.69
2604 7711 4.158764 TGGCGTACCAATCAAAATTTAGGG 59.841 41.667 0.00 0.00 45.37 3.53
2605 7712 4.399934 GGCGTACCAATCAAAATTTAGGGA 59.600 41.667 0.00 0.00 35.26 4.20
2606 7713 5.068591 GGCGTACCAATCAAAATTTAGGGAT 59.931 40.000 0.00 0.00 35.26 3.85
2607 7714 6.406512 GGCGTACCAATCAAAATTTAGGGATT 60.407 38.462 0.00 0.00 35.26 3.01
2645 7793 2.042569 TCTTTCCCCTTCCCTTTTAGGC 59.957 50.000 0.00 0.00 32.73 3.93
2646 7794 0.708209 TTCCCCTTCCCTTTTAGGCC 59.292 55.000 0.00 0.00 32.73 5.19
2647 7795 0.178813 TCCCCTTCCCTTTTAGGCCT 60.179 55.000 11.78 11.78 32.73 5.19
2648 7796 0.259065 CCCCTTCCCTTTTAGGCCTC 59.741 60.000 9.68 0.00 32.73 4.70
2649 7797 1.299939 CCCTTCCCTTTTAGGCCTCT 58.700 55.000 9.68 0.00 32.73 3.69
2650 7798 1.641192 CCCTTCCCTTTTAGGCCTCTT 59.359 52.381 9.68 0.00 32.73 2.85
2651 7799 2.043115 CCCTTCCCTTTTAGGCCTCTTT 59.957 50.000 9.68 0.00 32.73 2.52
2652 7800 3.502303 CCCTTCCCTTTTAGGCCTCTTTT 60.502 47.826 9.68 0.00 32.73 2.27
2653 7801 3.511540 CCTTCCCTTTTAGGCCTCTTTTG 59.488 47.826 9.68 0.00 32.73 2.44
2654 7802 3.169512 TCCCTTTTAGGCCTCTTTTGG 57.830 47.619 9.68 6.34 32.73 3.28
2655 7803 2.449345 TCCCTTTTAGGCCTCTTTTGGT 59.551 45.455 9.68 0.00 32.73 3.67
2656 7804 3.116900 TCCCTTTTAGGCCTCTTTTGGTT 60.117 43.478 9.68 0.00 32.73 3.67
2657 7805 3.258372 CCCTTTTAGGCCTCTTTTGGTTC 59.742 47.826 9.68 0.00 32.73 3.62
2658 7806 3.895041 CCTTTTAGGCCTCTTTTGGTTCA 59.105 43.478 9.68 0.00 0.00 3.18
2659 7807 4.528206 CCTTTTAGGCCTCTTTTGGTTCAT 59.472 41.667 9.68 0.00 0.00 2.57
2660 7808 5.714806 CCTTTTAGGCCTCTTTTGGTTCATA 59.285 40.000 9.68 0.00 0.00 2.15
2661 7809 6.127619 CCTTTTAGGCCTCTTTTGGTTCATAG 60.128 42.308 9.68 0.00 0.00 2.23
2662 7810 3.372440 AGGCCTCTTTTGGTTCATAGG 57.628 47.619 0.00 0.00 0.00 2.57
2663 7811 2.919602 AGGCCTCTTTTGGTTCATAGGA 59.080 45.455 0.00 0.00 0.00 2.94
2664 7812 3.529319 AGGCCTCTTTTGGTTCATAGGAT 59.471 43.478 0.00 0.00 0.00 3.24
2665 7813 4.726825 AGGCCTCTTTTGGTTCATAGGATA 59.273 41.667 0.00 0.00 0.00 2.59
2666 7814 5.066593 GGCCTCTTTTGGTTCATAGGATAG 58.933 45.833 0.00 0.00 0.00 2.08
2667 7815 5.066593 GCCTCTTTTGGTTCATAGGATAGG 58.933 45.833 0.00 0.00 0.00 2.57
2668 7816 5.163195 GCCTCTTTTGGTTCATAGGATAGGA 60.163 44.000 0.00 0.00 0.00 2.94
2669 7817 6.466470 GCCTCTTTTGGTTCATAGGATAGGAT 60.466 42.308 0.00 0.00 28.27 3.24
2670 7818 7.521669 CCTCTTTTGGTTCATAGGATAGGATT 58.478 38.462 0.00 0.00 28.27 3.01
2671 7819 8.660435 CCTCTTTTGGTTCATAGGATAGGATTA 58.340 37.037 0.00 0.00 28.27 1.75
2702 7850 9.413734 AGGAATAGGAATTTTGTAGGAAATGAG 57.586 33.333 0.00 0.00 30.06 2.90
2703 7851 9.408648 GGAATAGGAATTTTGTAGGAAATGAGA 57.591 33.333 0.00 0.00 30.06 3.27
2706 7854 7.651027 AGGAATTTTGTAGGAAATGAGATGG 57.349 36.000 0.00 0.00 30.06 3.51
2707 7855 6.097412 AGGAATTTTGTAGGAAATGAGATGGC 59.903 38.462 0.00 0.00 30.06 4.40
2708 7856 6.127366 GGAATTTTGTAGGAAATGAGATGGCA 60.127 38.462 0.00 0.00 30.06 4.92
2709 7857 7.418254 GGAATTTTGTAGGAAATGAGATGGCAT 60.418 37.037 0.00 0.00 30.06 4.40
2710 7858 5.840243 TTTGTAGGAAATGAGATGGCATG 57.160 39.130 3.81 0.00 0.00 4.06
2711 7859 4.508551 TGTAGGAAATGAGATGGCATGT 57.491 40.909 3.81 0.00 0.00 3.21
2712 7860 5.628797 TGTAGGAAATGAGATGGCATGTA 57.371 39.130 3.81 0.00 0.00 2.29
2713 7861 6.191657 TGTAGGAAATGAGATGGCATGTAT 57.808 37.500 3.81 0.00 0.00 2.29
2714 7862 6.233434 TGTAGGAAATGAGATGGCATGTATC 58.767 40.000 3.81 0.45 0.00 2.24
2715 7863 5.579753 AGGAAATGAGATGGCATGTATCT 57.420 39.130 3.81 12.53 37.59 1.98
2716 7864 5.558818 AGGAAATGAGATGGCATGTATCTC 58.441 41.667 23.83 23.83 46.82 2.75
2725 7873 8.789825 GAGATGGCATGTATCTCAAATCTTAT 57.210 34.615 24.83 2.03 46.22 1.73
2726 7874 8.563123 AGATGGCATGTATCTCAAATCTTATG 57.437 34.615 3.81 0.00 29.05 1.90
2727 7875 8.380867 AGATGGCATGTATCTCAAATCTTATGA 58.619 33.333 3.81 0.00 29.05 2.15
2728 7876 7.974482 TGGCATGTATCTCAAATCTTATGAG 57.026 36.000 0.00 0.00 44.53 2.90
2729 7877 7.512130 TGGCATGTATCTCAAATCTTATGAGT 58.488 34.615 3.72 0.00 43.77 3.41
2730 7878 8.650490 TGGCATGTATCTCAAATCTTATGAGTA 58.350 33.333 3.72 0.00 43.77 2.59
2731 7879 9.149225 GGCATGTATCTCAAATCTTATGAGTAG 57.851 37.037 3.72 0.00 43.77 2.57
2732 7880 9.149225 GCATGTATCTCAAATCTTATGAGTAGG 57.851 37.037 3.72 0.00 43.77 3.18
2739 7887 9.883293 TCTCAAATCTTATGAGTAGGAATAGGA 57.117 33.333 3.72 0.00 43.77 2.94
2743 7891 9.765795 AAATCTTATGAGTAGGAATAGGAAACG 57.234 33.333 0.00 0.00 0.00 3.60
2744 7892 8.707796 ATCTTATGAGTAGGAATAGGAAACGA 57.292 34.615 0.00 0.00 0.00 3.85
2745 7893 8.167605 TCTTATGAGTAGGAATAGGAAACGAG 57.832 38.462 0.00 0.00 0.00 4.18
2746 7894 7.997223 TCTTATGAGTAGGAATAGGAAACGAGA 59.003 37.037 0.00 0.00 0.00 4.04
2747 7895 8.707796 TTATGAGTAGGAATAGGAAACGAGAT 57.292 34.615 0.00 0.00 0.00 2.75
2748 7896 6.392625 TGAGTAGGAATAGGAAACGAGATG 57.607 41.667 0.00 0.00 0.00 2.90
2749 7897 5.892119 TGAGTAGGAATAGGAAACGAGATGT 59.108 40.000 0.00 0.00 0.00 3.06
2750 7898 6.039493 TGAGTAGGAATAGGAAACGAGATGTC 59.961 42.308 0.00 0.00 0.00 3.06
2751 7899 5.892119 AGTAGGAATAGGAAACGAGATGTCA 59.108 40.000 0.00 0.00 0.00 3.58
2752 7900 5.878406 AGGAATAGGAAACGAGATGTCAT 57.122 39.130 0.00 0.00 0.00 3.06
2753 7901 6.240549 AGGAATAGGAAACGAGATGTCATT 57.759 37.500 0.00 0.00 0.00 2.57
2754 7902 6.653989 AGGAATAGGAAACGAGATGTCATTT 58.346 36.000 0.00 0.00 0.00 2.32
2755 7903 6.540189 AGGAATAGGAAACGAGATGTCATTTG 59.460 38.462 0.00 0.00 0.00 2.32
2756 7904 6.238484 GGAATAGGAAACGAGATGTCATTTGG 60.238 42.308 0.00 0.00 0.00 3.28
2757 7905 4.021102 AGGAAACGAGATGTCATTTGGT 57.979 40.909 0.00 0.00 0.00 3.67
2758 7906 4.398319 AGGAAACGAGATGTCATTTGGTT 58.602 39.130 0.00 0.00 0.00 3.67
2759 7907 4.216257 AGGAAACGAGATGTCATTTGGTTG 59.784 41.667 4.80 0.00 0.00 3.77
2760 7908 4.215399 GGAAACGAGATGTCATTTGGTTGA 59.785 41.667 4.80 0.00 0.00 3.18
2761 7909 4.749245 AACGAGATGTCATTTGGTTGAC 57.251 40.909 3.39 0.00 45.05 3.18
2770 7918 5.452078 GTCATTTGGTTGACATCAAAGGA 57.548 39.130 12.16 12.16 44.38 3.36
2771 7919 5.841810 GTCATTTGGTTGACATCAAAGGAA 58.158 37.500 15.68 4.09 42.54 3.36
2772 7920 6.458210 GTCATTTGGTTGACATCAAAGGAAT 58.542 36.000 15.68 0.00 42.54 3.01
2773 7921 6.930722 GTCATTTGGTTGACATCAAAGGAATT 59.069 34.615 15.68 0.00 42.54 2.17
2774 7922 7.442062 GTCATTTGGTTGACATCAAAGGAATTT 59.558 33.333 15.68 0.00 42.54 1.82
2775 7923 7.992033 TCATTTGGTTGACATCAAAGGAATTTT 59.008 29.630 13.20 0.00 39.59 1.82
2776 7924 8.623030 CATTTGGTTGACATCAAAGGAATTTTT 58.377 29.630 9.43 0.00 36.97 1.94
2798 7946 7.765695 TTTTTCATTGAGTCTAGGCTCATTT 57.234 32.000 26.91 15.12 43.99 2.32
2799 7947 7.765695 TTTTCATTGAGTCTAGGCTCATTTT 57.234 32.000 26.91 12.69 43.99 1.82
2800 7948 7.765695 TTTCATTGAGTCTAGGCTCATTTTT 57.234 32.000 26.91 10.30 43.99 1.94
2801 7949 8.862325 TTTCATTGAGTCTAGGCTCATTTTTA 57.138 30.769 26.91 12.75 43.99 1.52
2802 7950 9.466497 TTTCATTGAGTCTAGGCTCATTTTTAT 57.534 29.630 26.91 14.49 43.99 1.40
2803 7951 9.466497 TTCATTGAGTCTAGGCTCATTTTTATT 57.534 29.630 26.91 4.66 43.99 1.40
2804 7952 9.466497 TCATTGAGTCTAGGCTCATTTTTATTT 57.534 29.630 26.91 3.37 43.99 1.40
2807 7955 8.281212 TGAGTCTAGGCTCATTTTTATTTTCC 57.719 34.615 23.07 0.00 40.23 3.13
2808 7956 8.109634 TGAGTCTAGGCTCATTTTTATTTTCCT 58.890 33.333 23.07 0.00 40.23 3.36
2809 7957 9.614792 GAGTCTAGGCTCATTTTTATTTTCCTA 57.385 33.333 19.57 0.00 35.67 2.94
2827 7975 8.752005 TTTTCCTATGAAATGTGAAGGATAGG 57.248 34.615 0.00 0.00 40.08 2.57
2828 7976 7.690454 TTCCTATGAAATGTGAAGGATAGGA 57.310 36.000 0.00 0.00 39.66 2.94
2829 7977 7.690454 TCCTATGAAATGTGAAGGATAGGAA 57.310 36.000 0.00 0.00 38.86 3.36
2830 7978 7.509546 TCCTATGAAATGTGAAGGATAGGAAC 58.490 38.462 0.00 0.00 38.86 3.62
2831 7979 6.712547 CCTATGAAATGTGAAGGATAGGAACC 59.287 42.308 0.00 0.00 36.16 3.62
2832 7980 5.512942 TGAAATGTGAAGGATAGGAACCA 57.487 39.130 0.00 0.00 0.00 3.67
2833 7981 5.886609 TGAAATGTGAAGGATAGGAACCAA 58.113 37.500 0.00 0.00 0.00 3.67
2834 7982 6.493166 TGAAATGTGAAGGATAGGAACCAAT 58.507 36.000 0.00 0.00 0.00 3.16
2835 7983 6.603201 TGAAATGTGAAGGATAGGAACCAATC 59.397 38.462 0.00 0.00 0.00 2.67
2874 8022 7.751768 GAATCTATTCCTATGAACCAAAGGG 57.248 40.000 0.00 0.00 41.29 3.95
2875 8023 5.048846 TCTATTCCTATGAACCAAAGGGC 57.951 43.478 0.00 0.00 37.90 5.19
2876 8024 4.726825 TCTATTCCTATGAACCAAAGGGCT 59.273 41.667 0.00 0.00 37.90 5.19
2877 8025 3.366052 TTCCTATGAACCAAAGGGCTC 57.634 47.619 0.00 0.00 37.90 4.70
2878 8026 2.562296 TCCTATGAACCAAAGGGCTCT 58.438 47.619 0.00 0.00 37.90 4.09
2879 8027 3.731431 TCCTATGAACCAAAGGGCTCTA 58.269 45.455 0.00 0.00 37.90 2.43
2880 8028 4.307259 TCCTATGAACCAAAGGGCTCTAT 58.693 43.478 0.00 0.00 37.90 1.98
2881 8029 5.473273 TCCTATGAACCAAAGGGCTCTATA 58.527 41.667 0.00 0.00 37.90 1.31
2882 8030 5.544176 TCCTATGAACCAAAGGGCTCTATAG 59.456 44.000 0.00 0.00 37.90 1.31
2883 8031 4.713792 ATGAACCAAAGGGCTCTATAGG 57.286 45.455 0.00 0.00 37.90 2.57
2884 8032 3.731431 TGAACCAAAGGGCTCTATAGGA 58.269 45.455 5.94 0.00 37.90 2.94
2885 8033 4.108570 TGAACCAAAGGGCTCTATAGGAA 58.891 43.478 5.94 0.00 37.90 3.36
2886 8034 4.538490 TGAACCAAAGGGCTCTATAGGAAA 59.462 41.667 5.94 0.00 37.90 3.13
2887 8035 5.014755 TGAACCAAAGGGCTCTATAGGAAAA 59.985 40.000 5.94 0.00 37.90 2.29
2888 8036 5.530176 ACCAAAGGGCTCTATAGGAAAAA 57.470 39.130 5.94 0.00 37.90 1.94
2932 8080 9.853177 TCCTCTAAAATTCCTATGAAATTCCTC 57.147 33.333 0.00 0.00 33.32 3.71
2933 8081 9.859152 CCTCTAAAATTCCTATGAAATTCCTCT 57.141 33.333 0.00 0.00 33.32 3.69
2939 8087 9.768215 AAATTCCTATGAAATTCCTCTAAACCA 57.232 29.630 0.00 0.00 33.32 3.67
2940 8088 9.768215 AATTCCTATGAAATTCCTCTAAACCAA 57.232 29.630 0.00 0.00 33.32 3.67
2941 8089 9.768215 ATTCCTATGAAATTCCTCTAAACCAAA 57.232 29.630 0.00 0.00 33.32 3.28
2942 8090 8.807948 TCCTATGAAATTCCTCTAAACCAAAG 57.192 34.615 0.00 0.00 0.00 2.77
2943 8091 7.834181 TCCTATGAAATTCCTCTAAACCAAAGG 59.166 37.037 0.00 0.00 0.00 3.11
2944 8092 7.834181 CCTATGAAATTCCTCTAAACCAAAGGA 59.166 37.037 0.00 0.00 37.42 3.36
2945 8093 7.709149 ATGAAATTCCTCTAAACCAAAGGAG 57.291 36.000 0.00 0.00 40.21 3.69
2946 8094 6.010219 TGAAATTCCTCTAAACCAAAGGAGG 58.990 40.000 0.00 0.00 44.69 4.30
2947 8095 3.434940 TTCCTCTAAACCAAAGGAGGC 57.565 47.619 0.00 0.00 43.46 4.70
2948 8096 1.633945 TCCTCTAAACCAAAGGAGGCC 59.366 52.381 0.00 0.00 43.46 5.19
2949 8097 1.636003 CCTCTAAACCAAAGGAGGCCT 59.364 52.381 3.86 3.86 38.82 5.19
2951 8099 3.265995 CCTCTAAACCAAAGGAGGCCTTA 59.734 47.826 6.77 0.00 43.92 2.69
2952 8100 4.518249 CTCTAAACCAAAGGAGGCCTTAG 58.482 47.826 6.77 0.67 43.92 2.18
2953 8101 1.924731 AAACCAAAGGAGGCCTTAGC 58.075 50.000 6.77 0.00 43.92 3.09
2954 8102 1.076438 AACCAAAGGAGGCCTTAGCT 58.924 50.000 6.77 0.00 43.92 3.32
3008 8156 2.722487 GGTGACGGCGAGATCGAT 59.278 61.111 16.62 0.00 43.02 3.59
3009 8157 1.658717 GGTGACGGCGAGATCGATG 60.659 63.158 16.62 0.00 43.02 3.84
3010 8158 1.355563 GTGACGGCGAGATCGATGA 59.644 57.895 16.62 0.00 43.02 2.92
3011 8159 0.248498 GTGACGGCGAGATCGATGAA 60.248 55.000 16.62 0.00 43.02 2.57
3012 8160 0.668535 TGACGGCGAGATCGATGAAT 59.331 50.000 16.62 0.00 43.02 2.57
3013 8161 1.332178 GACGGCGAGATCGATGAATC 58.668 55.000 16.62 0.00 43.02 2.52
3014 8162 0.039074 ACGGCGAGATCGATGAATCC 60.039 55.000 16.62 0.00 43.02 3.01
3015 8163 0.734253 CGGCGAGATCGATGAATCCC 60.734 60.000 0.54 1.64 43.02 3.85
3016 8164 0.734253 GGCGAGATCGATGAATCCCG 60.734 60.000 0.54 0.00 43.02 5.14
3017 8165 0.039074 GCGAGATCGATGAATCCCGT 60.039 55.000 0.54 0.00 43.02 5.28
3018 8166 1.199327 GCGAGATCGATGAATCCCGTA 59.801 52.381 0.54 0.00 43.02 4.02
3019 8167 2.852748 CGAGATCGATGAATCCCGTAC 58.147 52.381 0.54 0.00 43.02 3.67
3020 8168 2.725145 CGAGATCGATGAATCCCGTACG 60.725 54.545 8.69 8.69 43.02 3.67
3021 8169 2.225963 GAGATCGATGAATCCCGTACGT 59.774 50.000 15.21 0.00 0.00 3.57
3022 8170 2.225963 AGATCGATGAATCCCGTACGTC 59.774 50.000 15.21 5.57 0.00 4.34
3023 8171 0.664761 TCGATGAATCCCGTACGTCC 59.335 55.000 15.21 0.00 0.00 4.79
3024 8172 0.382873 CGATGAATCCCGTACGTCCA 59.617 55.000 15.21 4.79 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 2.633657 GTGTGCTGTGCGGTCAAG 59.366 61.111 0.00 0.00 0.00 3.02
63 69 1.066002 CCATCCATTTCATCCGTGTGC 59.934 52.381 0.00 0.00 0.00 4.57
64 70 2.642427 TCCATCCATTTCATCCGTGTG 58.358 47.619 0.00 0.00 0.00 3.82
65 71 3.282021 CTTCCATCCATTTCATCCGTGT 58.718 45.455 0.00 0.00 0.00 4.49
66 72 2.620115 CCTTCCATCCATTTCATCCGTG 59.380 50.000 0.00 0.00 0.00 4.94
67 73 2.509548 TCCTTCCATCCATTTCATCCGT 59.490 45.455 0.00 0.00 0.00 4.69
108 115 3.007398 ACAAAAGTGAACAGGCAACCAAA 59.993 39.130 0.00 0.00 37.17 3.28
119 126 1.555477 CGGCACCAACAAAAGTGAAC 58.445 50.000 0.00 0.00 36.01 3.18
121 128 0.681564 ACCGGCACCAACAAAAGTGA 60.682 50.000 0.00 0.00 36.01 3.41
247 823 7.808672 TCACGAACTTCTCAACAAAAGTAAAA 58.191 30.769 0.00 0.00 34.71 1.52
262 853 7.007456 GCTTTGCTTAACATTATCACGAACTTC 59.993 37.037 0.00 0.00 0.00 3.01
275 866 1.273327 GCCCACTGCTTTGCTTAACAT 59.727 47.619 0.00 0.00 36.87 2.71
276 867 0.673437 GCCCACTGCTTTGCTTAACA 59.327 50.000 0.00 0.00 36.87 2.41
277 868 0.387239 CGCCCACTGCTTTGCTTAAC 60.387 55.000 0.00 0.00 38.05 2.01
278 869 1.523154 CCGCCCACTGCTTTGCTTAA 61.523 55.000 0.00 0.00 38.05 1.85
279 870 1.971167 CCGCCCACTGCTTTGCTTA 60.971 57.895 0.00 0.00 38.05 3.09
280 871 3.297620 CCGCCCACTGCTTTGCTT 61.298 61.111 0.00 0.00 38.05 3.91
283 874 1.996786 CTATGCCGCCCACTGCTTTG 61.997 60.000 0.00 0.00 38.05 2.77
284 875 1.750399 CTATGCCGCCCACTGCTTT 60.750 57.895 0.00 0.00 38.05 3.51
285 876 2.124570 CTATGCCGCCCACTGCTT 60.125 61.111 0.00 0.00 38.05 3.91
286 877 3.402681 ACTATGCCGCCCACTGCT 61.403 61.111 0.00 0.00 38.05 4.24
287 878 3.204827 CACTATGCCGCCCACTGC 61.205 66.667 0.00 0.00 0.00 4.40
288 879 2.108514 CACACTATGCCGCCCACTG 61.109 63.158 0.00 0.00 0.00 3.66
289 880 1.261938 TACACACTATGCCGCCCACT 61.262 55.000 0.00 0.00 0.00 4.00
290 881 0.179056 ATACACACTATGCCGCCCAC 60.179 55.000 0.00 0.00 0.00 4.61
291 882 0.179059 CATACACACTATGCCGCCCA 60.179 55.000 0.00 0.00 0.00 5.36
292 883 0.179056 ACATACACACTATGCCGCCC 60.179 55.000 0.00 0.00 0.00 6.13
293 884 0.937304 CACATACACACTATGCCGCC 59.063 55.000 0.00 0.00 0.00 6.13
294 885 0.304705 GCACATACACACTATGCCGC 59.695 55.000 0.00 0.00 0.00 6.53
295 886 0.576798 CGCACATACACACTATGCCG 59.423 55.000 0.00 0.00 32.55 5.69
296 887 0.304705 GCGCACATACACACTATGCC 59.695 55.000 0.30 0.00 32.55 4.40
297 888 1.006086 TGCGCACATACACACTATGC 58.994 50.000 5.66 0.00 0.00 3.14
298 889 2.865551 TGATGCGCACATACACACTATG 59.134 45.455 14.90 0.00 36.35 2.23
299 890 3.126073 CTGATGCGCACATACACACTAT 58.874 45.455 14.90 0.00 36.35 2.12
300 891 2.094234 ACTGATGCGCACATACACACTA 60.094 45.455 14.90 0.00 36.35 2.74
384 1011 1.799383 GTACAGGAGACGGGTCGAC 59.201 63.158 7.13 7.13 34.09 4.20
425 1052 2.048409 CGCTGACTGACTGCTGCT 60.048 61.111 0.00 0.00 40.49 4.24
475 3841 3.499737 GATGGGCTTGACGGTGCG 61.500 66.667 0.00 0.00 0.00 5.34
476 3842 1.315257 AATGATGGGCTTGACGGTGC 61.315 55.000 0.00 0.00 0.00 5.01
477 3843 0.734889 GAATGATGGGCTTGACGGTG 59.265 55.000 0.00 0.00 0.00 4.94
478 3844 0.744414 CGAATGATGGGCTTGACGGT 60.744 55.000 0.00 0.00 0.00 4.83
479 3845 1.439353 CCGAATGATGGGCTTGACGG 61.439 60.000 0.00 0.00 0.00 4.79
480 3846 0.744414 ACCGAATGATGGGCTTGACG 60.744 55.000 0.00 0.00 0.00 4.35
481 3847 1.017387 GACCGAATGATGGGCTTGAC 58.983 55.000 0.00 0.00 0.00 3.18
664 4096 1.236616 CGCAGGGCACAACATCTCAA 61.237 55.000 0.00 0.00 0.00 3.02
773 5451 4.740822 GGCGGAACCATGTGGCCT 62.741 66.667 3.32 0.00 40.59 5.19
808 5514 0.826256 GGAGTCAACCCAACCCAACC 60.826 60.000 0.00 0.00 0.00 3.77
809 5515 0.106419 TGGAGTCAACCCAACCCAAC 60.106 55.000 0.00 0.00 0.00 3.77
1106 5898 3.190535 ACTGAAGCACGTTCAAAGTTTGT 59.809 39.130 15.08 0.00 44.83 2.83
1129 5921 3.314541 TGATGATGATGATCAGCGAGG 57.685 47.619 6.46 0.00 46.24 4.63
1133 5925 3.371285 CGTCCATGATGATGATGATCAGC 59.629 47.826 3.40 3.40 44.00 4.26
1637 6497 4.720902 TCGGACTGGACGCCGGTA 62.721 66.667 1.90 0.00 44.10 4.02
1688 6557 2.099831 GAGGACGCGTCGAACGAT 59.900 61.111 30.99 13.42 46.05 3.73
1817 6719 4.065281 GTCGGGTAGCACGGCTGT 62.065 66.667 8.44 0.00 40.10 4.40
1900 6805 7.763528 TCATGGTTAATAATGCATGGAAAACAC 59.236 33.333 0.00 0.00 0.00 3.32
1905 6810 7.062322 ACTCTCATGGTTAATAATGCATGGAA 58.938 34.615 0.00 0.00 0.00 3.53
1941 6846 1.968050 AAATCTACGGCGGTCCTGGG 61.968 60.000 13.24 0.00 0.00 4.45
1983 6896 1.340697 GGGACCGGGCAAAAGAACTAT 60.341 52.381 11.00 0.00 0.00 2.12
2033 6952 5.948758 TGGATGATAGATAGATCAAGCGACT 59.051 40.000 0.00 0.00 39.25 4.18
2040 6959 5.601729 GCTGGGATGGATGATAGATAGATCA 59.398 44.000 0.00 0.00 40.08 2.92
2042 6961 4.906664 GGCTGGGATGGATGATAGATAGAT 59.093 45.833 0.00 0.00 0.00 1.98
2045 6964 4.078932 TGGCTGGGATGGATGATAGATA 57.921 45.455 0.00 0.00 0.00 1.98
2053 6972 2.077842 GCTGGATGGCTGGGATGGAT 62.078 60.000 0.00 0.00 0.00 3.41
2054 6973 2.760378 GCTGGATGGCTGGGATGGA 61.760 63.158 0.00 0.00 0.00 3.41
2055 6974 2.203451 GCTGGATGGCTGGGATGG 60.203 66.667 0.00 0.00 0.00 3.51
2057 6976 2.697263 TGGCTGGATGGCTGGGAT 60.697 61.111 0.00 0.00 42.34 3.85
2058 6977 3.414193 CTGGCTGGATGGCTGGGA 61.414 66.667 0.00 0.00 42.34 4.37
2063 6982 3.301222 TTTCCCCTGGCTGGATGGC 62.301 63.158 12.58 0.00 38.35 4.40
2067 6986 1.071314 TTTCCTTTCCCCTGGCTGGA 61.071 55.000 12.58 0.00 38.35 3.86
2070 6989 0.560688 TGTTTTCCTTTCCCCTGGCT 59.439 50.000 0.00 0.00 0.00 4.75
2071 6990 0.679505 GTGTTTTCCTTTCCCCTGGC 59.320 55.000 0.00 0.00 0.00 4.85
2072 6991 1.338107 GGTGTTTTCCTTTCCCCTGG 58.662 55.000 0.00 0.00 0.00 4.45
2073 6992 2.080654 TGGTGTTTTCCTTTCCCCTG 57.919 50.000 0.00 0.00 0.00 4.45
2074 6993 2.858787 TTGGTGTTTTCCTTTCCCCT 57.141 45.000 0.00 0.00 0.00 4.79
2075 6994 3.916359 TTTTGGTGTTTTCCTTTCCCC 57.084 42.857 0.00 0.00 0.00 4.81
2139 7063 2.738521 AGACCGCGACACATGTGC 60.739 61.111 25.68 16.56 0.00 4.57
2140 7064 2.382746 CCAGACCGCGACACATGTG 61.383 63.158 24.25 24.25 0.00 3.21
2141 7065 2.048222 CCAGACCGCGACACATGT 60.048 61.111 8.23 0.00 0.00 3.21
2142 7066 2.094659 GTCCAGACCGCGACACATG 61.095 63.158 8.23 0.00 0.00 3.21
2143 7067 2.261671 GTCCAGACCGCGACACAT 59.738 61.111 8.23 0.00 0.00 3.21
2144 7068 2.910479 AGTCCAGACCGCGACACA 60.910 61.111 8.23 0.00 0.00 3.72
2145 7069 2.430921 CAGTCCAGACCGCGACAC 60.431 66.667 8.23 0.00 0.00 3.67
2146 7070 3.680786 CCAGTCCAGACCGCGACA 61.681 66.667 8.23 0.00 0.00 4.35
2148 7072 3.062466 CTCCAGTCCAGACCGCGA 61.062 66.667 8.23 0.00 0.00 5.87
2151 7075 1.810532 GTAGCTCCAGTCCAGACCG 59.189 63.158 0.00 0.00 0.00 4.79
2152 7076 0.966370 ACGTAGCTCCAGTCCAGACC 60.966 60.000 0.00 0.00 0.00 3.85
2153 7077 0.171455 CACGTAGCTCCAGTCCAGAC 59.829 60.000 0.00 0.00 0.00 3.51
2177 7105 4.005650 CCACAGTAGTAGTCGTCCAACTA 58.994 47.826 0.00 0.00 0.00 2.24
2230 7158 6.319807 TTTCAGCACGAAAACGTACGTACG 62.320 45.833 38.49 38.49 45.34 3.67
2231 7159 2.043411 TCAGCACGAAAACGTACGTAC 58.957 47.619 23.12 15.90 40.76 3.67
2232 7160 2.397777 TCAGCACGAAAACGTACGTA 57.602 45.000 23.12 0.00 40.76 3.57
2233 7161 1.558741 TTCAGCACGAAAACGTACGT 58.441 45.000 16.72 16.72 43.50 3.57
2255 7183 2.378858 GCACGAGTGACAGCTCTGC 61.379 63.158 7.50 10.46 34.85 4.26
2256 7184 1.735920 GGCACGAGTGACAGCTCTG 60.736 63.158 7.50 0.00 38.82 3.35
2257 7185 2.653702 GGCACGAGTGACAGCTCT 59.346 61.111 7.50 0.00 38.82 4.09
2437 7538 0.896019 ACAGTCCACTACGAGCAGCT 60.896 55.000 0.00 0.00 0.00 4.24
2446 7547 3.162666 ACCAAATCTCGACAGTCCACTA 58.837 45.455 0.00 0.00 0.00 2.74
2479 7581 2.813061 CCGCCATGATGTTTTTGGATC 58.187 47.619 0.00 0.00 31.94 3.36
2480 7582 1.134729 GCCGCCATGATGTTTTTGGAT 60.135 47.619 0.00 0.00 31.94 3.41
2515 7617 8.840833 ACAACAAAAGAAAAAGAAAGGCTAAA 57.159 26.923 0.00 0.00 0.00 1.85
2516 7618 8.840833 AACAACAAAAGAAAAAGAAAGGCTAA 57.159 26.923 0.00 0.00 0.00 3.09
2517 7619 7.274686 CGAACAACAAAAGAAAAAGAAAGGCTA 59.725 33.333 0.00 0.00 0.00 3.93
2518 7620 6.090763 CGAACAACAAAAGAAAAAGAAAGGCT 59.909 34.615 0.00 0.00 0.00 4.58
2519 7621 6.128661 ACGAACAACAAAAGAAAAAGAAAGGC 60.129 34.615 0.00 0.00 0.00 4.35
2520 7622 7.346208 ACGAACAACAAAAGAAAAAGAAAGG 57.654 32.000 0.00 0.00 0.00 3.11
2521 7623 8.484008 TGAACGAACAACAAAAGAAAAAGAAAG 58.516 29.630 0.00 0.00 0.00 2.62
2522 7624 8.270111 GTGAACGAACAACAAAAGAAAAAGAAA 58.730 29.630 0.00 0.00 0.00 2.52
2523 7625 7.650104 AGTGAACGAACAACAAAAGAAAAAGAA 59.350 29.630 0.00 0.00 0.00 2.52
2524 7626 7.114247 CAGTGAACGAACAACAAAAGAAAAAGA 59.886 33.333 0.00 0.00 0.00 2.52
2525 7627 7.096230 ACAGTGAACGAACAACAAAAGAAAAAG 60.096 33.333 0.00 0.00 0.00 2.27
2526 7628 6.697892 ACAGTGAACGAACAACAAAAGAAAAA 59.302 30.769 0.00 0.00 0.00 1.94
2578 7685 3.848272 ATTTTGATTGGTACGCCAGTG 57.152 42.857 0.00 0.00 46.91 3.66
2579 7686 4.864704 AAATTTTGATTGGTACGCCAGT 57.135 36.364 0.00 0.00 46.91 4.00
2581 7688 4.158764 CCCTAAATTTTGATTGGTACGCCA 59.841 41.667 0.00 0.00 44.38 5.69
2582 7689 4.399934 TCCCTAAATTTTGATTGGTACGCC 59.600 41.667 0.00 0.00 0.00 5.68
2583 7690 5.570234 TCCCTAAATTTTGATTGGTACGC 57.430 39.130 0.00 0.00 0.00 4.42
2594 7701 4.141959 CCGCCATCACAATCCCTAAATTTT 60.142 41.667 0.00 0.00 0.00 1.82
2602 7709 3.219198 GGCCGCCATCACAATCCC 61.219 66.667 3.91 0.00 0.00 3.85
2603 7710 3.585990 CGGCCGCCATCACAATCC 61.586 66.667 14.67 0.00 0.00 3.01
2604 7711 3.585990 CCGGCCGCCATCACAATC 61.586 66.667 22.85 0.00 0.00 2.67
2645 7793 6.500589 TCCTATCCTATGAACCAAAAGAGG 57.499 41.667 0.00 0.00 0.00 3.69
2676 7824 9.413734 CTCATTTCCTACAAAATTCCTATTCCT 57.586 33.333 0.00 0.00 0.00 3.36
2677 7825 9.408648 TCTCATTTCCTACAAAATTCCTATTCC 57.591 33.333 0.00 0.00 0.00 3.01
2680 7828 9.359653 CCATCTCATTTCCTACAAAATTCCTAT 57.640 33.333 0.00 0.00 0.00 2.57
2681 7829 7.285401 GCCATCTCATTTCCTACAAAATTCCTA 59.715 37.037 0.00 0.00 0.00 2.94
2682 7830 6.097412 GCCATCTCATTTCCTACAAAATTCCT 59.903 38.462 0.00 0.00 0.00 3.36
2683 7831 6.127366 TGCCATCTCATTTCCTACAAAATTCC 60.127 38.462 0.00 0.00 0.00 3.01
2684 7832 6.866480 TGCCATCTCATTTCCTACAAAATTC 58.134 36.000 0.00 0.00 0.00 2.17
2685 7833 6.855763 TGCCATCTCATTTCCTACAAAATT 57.144 33.333 0.00 0.00 0.00 1.82
2686 7834 6.381994 ACATGCCATCTCATTTCCTACAAAAT 59.618 34.615 0.00 0.00 0.00 1.82
2687 7835 5.716228 ACATGCCATCTCATTTCCTACAAAA 59.284 36.000 0.00 0.00 0.00 2.44
2688 7836 5.263599 ACATGCCATCTCATTTCCTACAAA 58.736 37.500 0.00 0.00 0.00 2.83
2689 7837 4.858850 ACATGCCATCTCATTTCCTACAA 58.141 39.130 0.00 0.00 0.00 2.41
2690 7838 4.508551 ACATGCCATCTCATTTCCTACA 57.491 40.909 0.00 0.00 0.00 2.74
2691 7839 6.471146 AGATACATGCCATCTCATTTCCTAC 58.529 40.000 4.89 0.00 0.00 3.18
2692 7840 6.692849 AGATACATGCCATCTCATTTCCTA 57.307 37.500 4.89 0.00 0.00 2.94
2693 7841 5.558818 GAGATACATGCCATCTCATTTCCT 58.441 41.667 23.49 0.00 45.17 3.36
2694 7842 5.876612 GAGATACATGCCATCTCATTTCC 57.123 43.478 23.49 5.23 45.17 3.13
2700 7848 8.666573 CATAAGATTTGAGATACATGCCATCTC 58.333 37.037 22.40 22.40 45.76 2.75
2701 7849 8.380867 TCATAAGATTTGAGATACATGCCATCT 58.619 33.333 9.57 9.57 35.43 2.90
2702 7850 8.557592 TCATAAGATTTGAGATACATGCCATC 57.442 34.615 0.00 0.00 0.00 3.51
2703 7851 8.162085 ACTCATAAGATTTGAGATACATGCCAT 58.838 33.333 7.63 0.00 42.63 4.40
2704 7852 7.512130 ACTCATAAGATTTGAGATACATGCCA 58.488 34.615 7.63 0.00 42.63 4.92
2705 7853 7.976135 ACTCATAAGATTTGAGATACATGCC 57.024 36.000 7.63 0.00 42.63 4.40
2706 7854 9.149225 CCTACTCATAAGATTTGAGATACATGC 57.851 37.037 7.63 0.00 42.63 4.06
2713 7861 9.883293 TCCTATTCCTACTCATAAGATTTGAGA 57.117 33.333 7.63 0.00 42.63 3.27
2717 7865 9.765795 CGTTTCCTATTCCTACTCATAAGATTT 57.234 33.333 0.00 0.00 0.00 2.17
2718 7866 9.144298 TCGTTTCCTATTCCTACTCATAAGATT 57.856 33.333 0.00 0.00 0.00 2.40
2719 7867 8.707796 TCGTTTCCTATTCCTACTCATAAGAT 57.292 34.615 0.00 0.00 0.00 2.40
2720 7868 7.997223 TCTCGTTTCCTATTCCTACTCATAAGA 59.003 37.037 0.00 0.00 0.00 2.10
2721 7869 8.167605 TCTCGTTTCCTATTCCTACTCATAAG 57.832 38.462 0.00 0.00 0.00 1.73
2722 7870 8.577296 CATCTCGTTTCCTATTCCTACTCATAA 58.423 37.037 0.00 0.00 0.00 1.90
2723 7871 7.724506 ACATCTCGTTTCCTATTCCTACTCATA 59.275 37.037 0.00 0.00 0.00 2.15
2724 7872 6.551601 ACATCTCGTTTCCTATTCCTACTCAT 59.448 38.462 0.00 0.00 0.00 2.90
2725 7873 5.892119 ACATCTCGTTTCCTATTCCTACTCA 59.108 40.000 0.00 0.00 0.00 3.41
2726 7874 6.039493 TGACATCTCGTTTCCTATTCCTACTC 59.961 42.308 0.00 0.00 0.00 2.59
2727 7875 5.892119 TGACATCTCGTTTCCTATTCCTACT 59.108 40.000 0.00 0.00 0.00 2.57
2728 7876 6.145338 TGACATCTCGTTTCCTATTCCTAC 57.855 41.667 0.00 0.00 0.00 3.18
2729 7877 6.978674 ATGACATCTCGTTTCCTATTCCTA 57.021 37.500 0.00 0.00 0.00 2.94
2730 7878 5.878406 ATGACATCTCGTTTCCTATTCCT 57.122 39.130 0.00 0.00 0.00 3.36
2731 7879 6.238484 CCAAATGACATCTCGTTTCCTATTCC 60.238 42.308 0.00 0.00 33.97 3.01
2732 7880 6.316390 ACCAAATGACATCTCGTTTCCTATTC 59.684 38.462 0.00 0.00 33.97 1.75
2733 7881 6.180472 ACCAAATGACATCTCGTTTCCTATT 58.820 36.000 0.00 0.00 33.97 1.73
2734 7882 5.745227 ACCAAATGACATCTCGTTTCCTAT 58.255 37.500 0.00 0.00 33.97 2.57
2735 7883 5.160607 ACCAAATGACATCTCGTTTCCTA 57.839 39.130 0.00 0.00 33.97 2.94
2736 7884 4.021102 ACCAAATGACATCTCGTTTCCT 57.979 40.909 0.00 0.00 33.97 3.36
2737 7885 4.215399 TCAACCAAATGACATCTCGTTTCC 59.785 41.667 0.00 0.00 33.97 3.13
2738 7886 5.356882 TCAACCAAATGACATCTCGTTTC 57.643 39.130 0.00 0.00 33.97 2.78
2749 7897 6.669125 ATTCCTTTGATGTCAACCAAATGA 57.331 33.333 0.00 5.19 35.28 2.57
2750 7898 7.733402 AAATTCCTTTGATGTCAACCAAATG 57.267 32.000 0.00 3.42 35.28 2.32
2751 7899 8.750515 AAAAATTCCTTTGATGTCAACCAAAT 57.249 26.923 0.00 0.00 35.28 2.32
2783 7931 8.512966 AGGAAAATAAAAATGAGCCTAGACTC 57.487 34.615 0.00 0.00 37.19 3.36
2801 7949 9.359653 CCTATCCTTCACATTTCATAGGAAAAT 57.640 33.333 6.65 0.00 45.52 1.82
2802 7950 8.556589 TCCTATCCTTCACATTTCATAGGAAAA 58.443 33.333 6.65 0.00 45.52 2.29
2803 7951 8.101309 TCCTATCCTTCACATTTCATAGGAAA 57.899 34.615 4.85 4.85 46.36 3.13
2804 7952 7.690454 TCCTATCCTTCACATTTCATAGGAA 57.310 36.000 3.47 0.00 39.17 3.36
2805 7953 7.420214 GGTTCCTATCCTTCACATTTCATAGGA 60.420 40.741 2.01 2.01 39.98 2.94
2806 7954 6.712547 GGTTCCTATCCTTCACATTTCATAGG 59.287 42.308 0.00 0.00 35.93 2.57
2807 7955 7.282585 TGGTTCCTATCCTTCACATTTCATAG 58.717 38.462 0.00 0.00 0.00 2.23
2808 7956 7.206789 TGGTTCCTATCCTTCACATTTCATA 57.793 36.000 0.00 0.00 0.00 2.15
2809 7957 6.078456 TGGTTCCTATCCTTCACATTTCAT 57.922 37.500 0.00 0.00 0.00 2.57
2810 7958 5.512942 TGGTTCCTATCCTTCACATTTCA 57.487 39.130 0.00 0.00 0.00 2.69
2811 7959 6.039829 GGATTGGTTCCTATCCTTCACATTTC 59.960 42.308 19.71 0.00 41.78 2.17
2812 7960 5.893824 GGATTGGTTCCTATCCTTCACATTT 59.106 40.000 19.71 0.00 41.78 2.32
2813 7961 5.449553 GGATTGGTTCCTATCCTTCACATT 58.550 41.667 19.71 0.00 41.78 2.71
2814 7962 5.053978 GGATTGGTTCCTATCCTTCACAT 57.946 43.478 19.71 0.00 41.78 3.21
2815 7963 4.503714 GGATTGGTTCCTATCCTTCACA 57.496 45.455 19.71 0.00 41.78 3.58
2850 7998 6.207614 GCCCTTTGGTTCATAGGAATAGATTC 59.792 42.308 6.07 0.00 35.14 2.52
2851 7999 6.071320 GCCCTTTGGTTCATAGGAATAGATT 58.929 40.000 6.07 0.00 35.14 2.40
2852 8000 5.373854 AGCCCTTTGGTTCATAGGAATAGAT 59.626 40.000 6.07 0.00 35.14 1.98
2853 8001 4.726825 AGCCCTTTGGTTCATAGGAATAGA 59.273 41.667 6.07 0.00 35.14 1.98
2854 8002 5.053978 AGCCCTTTGGTTCATAGGAATAG 57.946 43.478 6.07 0.00 35.14 1.73
2855 8003 4.726825 AGAGCCCTTTGGTTCATAGGAATA 59.273 41.667 6.07 0.00 43.89 1.75
2856 8004 3.529319 AGAGCCCTTTGGTTCATAGGAAT 59.471 43.478 6.07 0.00 43.89 3.01
2857 8005 2.919602 AGAGCCCTTTGGTTCATAGGAA 59.080 45.455 6.07 0.00 43.89 3.36
2858 8006 2.562296 AGAGCCCTTTGGTTCATAGGA 58.438 47.619 6.07 0.00 43.89 2.94
2859 8007 4.713792 ATAGAGCCCTTTGGTTCATAGG 57.286 45.455 0.00 0.00 43.89 2.57
2860 8008 5.544176 TCCTATAGAGCCCTTTGGTTCATAG 59.456 44.000 0.00 4.04 43.89 2.23
2861 8009 5.473273 TCCTATAGAGCCCTTTGGTTCATA 58.527 41.667 0.00 0.00 43.89 2.15
2862 8010 4.307259 TCCTATAGAGCCCTTTGGTTCAT 58.693 43.478 0.00 0.00 43.89 2.57
2863 8011 3.731431 TCCTATAGAGCCCTTTGGTTCA 58.269 45.455 0.00 0.00 43.89 3.18
2864 8012 4.772886 TTCCTATAGAGCCCTTTGGTTC 57.227 45.455 0.00 0.00 41.91 3.62
2865 8013 5.530176 TTTTCCTATAGAGCCCTTTGGTT 57.470 39.130 0.00 0.00 0.00 3.67
2866 8014 5.530176 TTTTTCCTATAGAGCCCTTTGGT 57.470 39.130 0.00 0.00 0.00 3.67
2906 8054 9.853177 GAGGAATTTCATAGGAATTTTAGAGGA 57.147 33.333 0.00 0.00 31.93 3.71
2907 8055 9.859152 AGAGGAATTTCATAGGAATTTTAGAGG 57.141 33.333 0.00 0.00 31.93 3.69
2913 8061 9.768215 TGGTTTAGAGGAATTTCATAGGAATTT 57.232 29.630 0.00 0.00 31.93 1.82
2914 8062 9.768215 TTGGTTTAGAGGAATTTCATAGGAATT 57.232 29.630 0.00 0.00 31.93 2.17
2915 8063 9.768215 TTTGGTTTAGAGGAATTTCATAGGAAT 57.232 29.630 0.00 0.00 31.93 3.01
2916 8064 9.243105 CTTTGGTTTAGAGGAATTTCATAGGAA 57.757 33.333 0.00 0.00 0.00 3.36
2917 8065 7.834181 CCTTTGGTTTAGAGGAATTTCATAGGA 59.166 37.037 0.00 0.00 32.11 2.94
2918 8066 7.834181 TCCTTTGGTTTAGAGGAATTTCATAGG 59.166 37.037 0.00 0.00 36.67 2.57
2919 8067 8.807948 TCCTTTGGTTTAGAGGAATTTCATAG 57.192 34.615 0.00 0.00 36.67 2.23
2920 8068 8.807948 CTCCTTTGGTTTAGAGGAATTTCATA 57.192 34.615 0.00 0.00 39.00 2.15
2921 8069 7.709149 CTCCTTTGGTTTAGAGGAATTTCAT 57.291 36.000 0.00 0.00 39.00 2.57
2929 8077 2.041755 AAGGCCTCCTTTGGTTTAGAGG 59.958 50.000 5.23 0.43 41.69 3.69
2930 8078 3.441500 AAGGCCTCCTTTGGTTTAGAG 57.558 47.619 5.23 0.00 41.69 2.43
2931 8079 3.308188 GCTAAGGCCTCCTTTGGTTTAGA 60.308 47.826 5.23 0.00 41.69 2.10
2932 8080 3.017442 GCTAAGGCCTCCTTTGGTTTAG 58.983 50.000 5.23 1.23 41.69 1.85
2933 8081 2.647802 AGCTAAGGCCTCCTTTGGTTTA 59.352 45.455 5.23 0.00 42.36 2.01
2934 8082 1.429299 AGCTAAGGCCTCCTTTGGTTT 59.571 47.619 5.23 0.00 42.36 3.27
2935 8083 1.076438 AGCTAAGGCCTCCTTTGGTT 58.924 50.000 5.23 0.00 42.36 3.67
2936 8084 1.076438 AAGCTAAGGCCTCCTTTGGT 58.924 50.000 5.23 4.81 45.57 3.67
2937 8085 2.222227 AAAGCTAAGGCCTCCTTTGG 57.778 50.000 19.40 3.61 41.69 3.28
2938 8086 2.493675 GGAAAAGCTAAGGCCTCCTTTG 59.506 50.000 20.30 3.23 41.69 2.77
2939 8087 2.110011 TGGAAAAGCTAAGGCCTCCTTT 59.890 45.455 5.23 12.75 41.69 3.11
2940 8088 1.710809 TGGAAAAGCTAAGGCCTCCTT 59.289 47.619 5.23 6.59 46.63 3.36
2941 8089 1.372501 TGGAAAAGCTAAGGCCTCCT 58.627 50.000 5.23 0.00 39.73 3.69
2942 8090 2.302260 GATGGAAAAGCTAAGGCCTCC 58.698 52.381 5.23 0.00 39.73 4.30
2943 8091 1.943340 CGATGGAAAAGCTAAGGCCTC 59.057 52.381 5.23 0.00 39.73 4.70
2944 8092 1.559682 TCGATGGAAAAGCTAAGGCCT 59.440 47.619 0.00 0.00 39.73 5.19
2945 8093 2.038387 TCGATGGAAAAGCTAAGGCC 57.962 50.000 0.00 0.00 39.73 5.19
2946 8094 4.632153 TCTATCGATGGAAAAGCTAAGGC 58.368 43.478 9.27 0.00 39.06 4.35
2947 8095 7.736447 ATTTCTATCGATGGAAAAGCTAAGG 57.264 36.000 32.07 0.00 40.00 2.69
2948 8096 8.616076 ACAATTTCTATCGATGGAAAAGCTAAG 58.384 33.333 32.07 21.55 40.00 2.18
2949 8097 8.397906 CACAATTTCTATCGATGGAAAAGCTAA 58.602 33.333 32.07 15.30 40.00 3.09
2950 8098 7.552687 ACACAATTTCTATCGATGGAAAAGCTA 59.447 33.333 32.07 15.93 40.00 3.32
2951 8099 6.375455 ACACAATTTCTATCGATGGAAAAGCT 59.625 34.615 32.07 20.24 40.00 3.74
2952 8100 6.555315 ACACAATTTCTATCGATGGAAAAGC 58.445 36.000 32.07 0.00 40.00 3.51
2953 8101 7.485913 CCAACACAATTTCTATCGATGGAAAAG 59.514 37.037 32.07 28.06 40.00 2.27
2954 8102 7.312154 CCAACACAATTTCTATCGATGGAAAA 58.688 34.615 32.07 19.68 40.00 2.29
2976 8124 2.847234 ACCGTCAGTGGAGCCCAA 60.847 61.111 0.00 0.00 34.18 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.