Multiple sequence alignment - TraesCS2B01G114700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G114700 chr2B 100.000 7422 0 0 1 7422 77908930 77901509 0.000000e+00 13706.0
1 TraesCS2B01G114700 chr2B 100.000 238 0 0 7599 7836 77901332 77901095 2.600000e-119 440.0
2 TraesCS2B01G114700 chr2B 88.483 356 21 8 6632 6975 6721889 6721542 5.660000e-111 412.0
3 TraesCS2B01G114700 chr2B 92.929 198 13 1 5152 5349 121669510 121669706 3.580000e-73 287.0
4 TraesCS2B01G114700 chr2B 94.118 51 1 2 6509 6559 6721972 6721924 8.430000e-10 76.8
5 TraesCS2B01G114700 chr2A 93.062 2796 114 39 1425 4204 51673586 51670855 0.000000e+00 4015.0
6 TraesCS2B01G114700 chr2A 93.974 1560 68 16 5457 7007 51669563 51668021 0.000000e+00 2337.0
7 TraesCS2B01G114700 chr2A 90.331 1572 85 37 1425 2985 51735687 51734172 0.000000e+00 1999.0
8 TraesCS2B01G114700 chr2A 95.535 963 35 6 4199 5156 51670663 51669704 0.000000e+00 1533.0
9 TraesCS2B01G114700 chr2A 87.778 720 54 14 2575 3284 7323795 7324490 0.000000e+00 811.0
10 TraesCS2B01G114700 chr2A 91.327 565 34 8 3397 3953 7324529 7325086 0.000000e+00 758.0
11 TraesCS2B01G114700 chr2A 89.431 492 30 13 953 1423 51674161 51673671 1.130000e-167 601.0
12 TraesCS2B01G114700 chr2A 88.618 492 34 12 953 1423 51736262 51735772 5.270000e-161 579.0
13 TraesCS2B01G114700 chr2A 99.669 302 1 0 7121 7422 436384435 436384736 3.200000e-153 553.0
14 TraesCS2B01G114700 chr2A 99.580 238 1 0 7599 7836 436384885 436385122 1.210000e-117 435.0
15 TraesCS2B01G114700 chr2A 97.581 124 3 0 5340 5463 51669717 51669594 6.160000e-51 213.0
16 TraesCS2B01G114700 chr2A 94.245 139 6 2 6755 6891 3114865 3114727 2.220000e-50 211.0
17 TraesCS2B01G114700 chr2A 88.889 117 9 2 7008 7120 51667786 51667670 2.950000e-29 141.0
18 TraesCS2B01G114700 chr2A 100.000 36 0 0 4887 4922 51669918 51669883 5.070000e-07 67.6
19 TraesCS2B01G114700 chr2D 89.350 2216 131 37 2736 4934 50124389 50122262 0.000000e+00 2687.0
20 TraesCS2B01G114700 chr2D 93.622 1317 58 12 5703 7010 50121980 50120681 0.000000e+00 1943.0
21 TraesCS2B01G114700 chr2D 91.136 1162 68 17 1566 2716 50125516 50124379 0.000000e+00 1543.0
22 TraesCS2B01G114700 chr2D 86.404 1140 99 30 5447 6541 4452329 4453457 0.000000e+00 1195.0
23 TraesCS2B01G114700 chr2D 91.749 509 36 4 953 1460 50126062 50125559 0.000000e+00 702.0
24 TraesCS2B01G114700 chr2D 95.299 234 7 1 3713 3942 4411326 4411559 1.240000e-97 368.0
25 TraesCS2B01G114700 chr2D 96.721 183 6 0 4974 5156 4452012 4452194 9.880000e-79 305.0
26 TraesCS2B01G114700 chr2D 93.956 182 11 0 4975 5156 50122256 50122075 7.750000e-70 276.0
27 TraesCS2B01G114700 chr2D 94.012 167 7 2 4303 4466 4411576 4411742 4.690000e-62 250.0
28 TraesCS2B01G114700 chr2D 91.061 179 10 1 3444 3622 4410924 4411096 3.650000e-58 237.0
29 TraesCS2B01G114700 chr2D 88.991 109 4 3 6625 6727 4453497 4453603 2.300000e-25 128.0
30 TraesCS2B01G114700 chr2D 92.857 70 5 0 3647 3716 4411097 4411166 1.390000e-17 102.0
31 TraesCS2B01G114700 chr3D 80.936 897 147 16 7 898 513895078 513894201 0.000000e+00 688.0
32 TraesCS2B01G114700 chr4B 79.712 902 158 13 6 898 70727636 70726751 5.160000e-176 628.0
33 TraesCS2B01G114700 chr4B 77.970 867 177 12 12 874 449936443 449935587 1.500000e-146 531.0
34 TraesCS2B01G114700 chr4B 98.571 280 4 0 7114 7393 83305451 83305730 5.460000e-136 496.0
35 TraesCS2B01G114700 chr4B 99.580 238 1 0 7599 7836 83305761 83305998 1.210000e-117 435.0
36 TraesCS2B01G114700 chr4B 90.952 210 16 3 5145 5352 512171698 512171906 5.990000e-71 279.0
37 TraesCS2B01G114700 chr7A 99.671 304 1 0 7119 7422 546712251 546712554 2.470000e-154 556.0
38 TraesCS2B01G114700 chr7A 99.322 295 2 0 7128 7422 383427893 383427599 1.160000e-147 534.0
39 TraesCS2B01G114700 chr7A 98.566 279 3 1 7121 7399 227897892 227897615 7.060000e-135 492.0
40 TraesCS2B01G114700 chr7A 99.580 238 1 0 7599 7836 383427415 383427178 1.210000e-117 435.0
41 TraesCS2B01G114700 chr7A 99.580 238 1 0 7599 7836 546712585 546712822 1.210000e-117 435.0
42 TraesCS2B01G114700 chr7A 80.913 241 21 8 6744 6984 573456508 573456293 4.860000e-37 167.0
43 TraesCS2B01G114700 chr7A 89.041 73 8 0 6722 6794 573456889 573456817 3.010000e-14 91.6
44 TraesCS2B01G114700 chr7B 99.344 305 2 0 7118 7422 619102308 619102612 3.200000e-153 553.0
45 TraesCS2B01G114700 chr7B 99.669 302 1 0 7121 7422 735588451 735588150 3.200000e-153 553.0
46 TraesCS2B01G114700 chr7B 99.580 238 1 0 7599 7836 735587921 735587684 1.210000e-117 435.0
47 TraesCS2B01G114700 chr7B 99.160 238 2 0 7599 7836 619103036 619103273 5.620000e-116 429.0
48 TraesCS2B01G114700 chr7B 80.000 240 25 5 6722 6961 534021645 534021429 1.050000e-33 156.0
49 TraesCS2B01G114700 chr1B 99.669 302 1 0 7121 7422 377839996 377839695 3.200000e-153 553.0
50 TraesCS2B01G114700 chr1B 99.669 302 1 0 7121 7422 622884530 622884229 3.200000e-153 553.0
51 TraesCS2B01G114700 chr1B 99.160 238 1 1 7599 7836 377839545 377839309 2.020000e-115 427.0
52 TraesCS2B01G114700 chr1B 94.241 191 11 0 5157 5347 378403168 378402978 7.690000e-75 292.0
53 TraesCS2B01G114700 chr3B 77.288 907 184 21 4 899 820120442 820119547 1.510000e-141 514.0
54 TraesCS2B01G114700 chr1A 99.580 238 1 0 7599 7836 65898226 65898463 1.210000e-117 435.0
55 TraesCS2B01G114700 chr1A 95.263 190 6 3 5157 5344 554284184 554284372 1.650000e-76 298.0
56 TraesCS2B01G114700 chr1A 95.263 190 6 3 5157 5344 554289509 554289321 1.650000e-76 298.0
57 TraesCS2B01G114700 chr1A 91.388 209 14 4 5146 5352 116593550 116593756 4.630000e-72 283.0
58 TraesCS2B01G114700 chr4A 99.160 238 1 1 7599 7836 642548550 642548786 2.020000e-115 427.0
59 TraesCS2B01G114700 chr4A 94.764 191 9 1 5157 5347 64574206 64574017 5.950000e-76 296.0
60 TraesCS2B01G114700 chr6A 92.929 198 12 2 5145 5341 139333646 139333842 3.580000e-73 287.0
61 TraesCS2B01G114700 chr5A 92.118 203 15 1 5144 5346 694975932 694976133 1.290000e-72 285.0
62 TraesCS2B01G114700 chr7D 81.749 263 26 4 6722 6984 506123204 506122964 4.800000e-47 200.0
63 TraesCS2B01G114700 chr7D 80.989 263 25 6 6722 6984 506112710 506112473 1.340000e-42 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G114700 chr2B 77901095 77908930 7835 True 7073.000000 13706 100.000000 1 7836 2 chr2B.!!$R2 7835
1 TraesCS2B01G114700 chr2A 51734172 51736262 2090 True 1289.000000 1999 89.474500 953 2985 2 chr2A.!!$R3 2032
2 TraesCS2B01G114700 chr2A 51667670 51674161 6491 True 1272.514286 4015 94.067429 953 7120 7 chr2A.!!$R2 6167
3 TraesCS2B01G114700 chr2A 7323795 7325086 1291 False 784.500000 811 89.552500 2575 3953 2 chr2A.!!$F1 1378
4 TraesCS2B01G114700 chr2A 436384435 436385122 687 False 494.000000 553 99.624500 7121 7836 2 chr2A.!!$F2 715
5 TraesCS2B01G114700 chr2D 50120681 50126062 5381 True 1430.200000 2687 91.962600 953 7010 5 chr2D.!!$R1 6057
6 TraesCS2B01G114700 chr2D 4452012 4453603 1591 False 542.666667 1195 90.705333 4974 6727 3 chr2D.!!$F2 1753
7 TraesCS2B01G114700 chr2D 4410924 4411742 818 False 239.250000 368 93.307250 3444 4466 4 chr2D.!!$F1 1022
8 TraesCS2B01G114700 chr3D 513894201 513895078 877 True 688.000000 688 80.936000 7 898 1 chr3D.!!$R1 891
9 TraesCS2B01G114700 chr4B 70726751 70727636 885 True 628.000000 628 79.712000 6 898 1 chr4B.!!$R1 892
10 TraesCS2B01G114700 chr4B 449935587 449936443 856 True 531.000000 531 77.970000 12 874 1 chr4B.!!$R2 862
11 TraesCS2B01G114700 chr4B 83305451 83305998 547 False 465.500000 496 99.075500 7114 7836 2 chr4B.!!$F2 722
12 TraesCS2B01G114700 chr7A 546712251 546712822 571 False 495.500000 556 99.625500 7119 7836 2 chr7A.!!$F1 717
13 TraesCS2B01G114700 chr7A 383427178 383427893 715 True 484.500000 534 99.451000 7128 7836 2 chr7A.!!$R2 708
14 TraesCS2B01G114700 chr7B 735587684 735588451 767 True 494.000000 553 99.624500 7121 7836 2 chr7B.!!$R2 715
15 TraesCS2B01G114700 chr7B 619102308 619103273 965 False 491.000000 553 99.252000 7118 7836 2 chr7B.!!$F1 718
16 TraesCS2B01G114700 chr1B 377839309 377839996 687 True 490.000000 553 99.414500 7121 7836 2 chr1B.!!$R3 715
17 TraesCS2B01G114700 chr3B 820119547 820120442 895 True 514.000000 514 77.288000 4 899 1 chr3B.!!$R1 895

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
891 921 0.105964 AGGCCGGCATTCTCTCTCTA 60.106 55.0 30.85 0.00 0.00 2.43 F
1442 1577 0.033894 AAACGGTTCTTGTGGTGGGT 60.034 50.0 0.00 0.00 0.00 4.51 F
1705 1858 0.179176 TAAATGCATGTCGCCGTTGC 60.179 50.0 0.00 3.24 41.33 4.17 F
2860 3026 0.320374 CCTCTGTCGCCAGGTACAAA 59.680 55.0 0.00 0.00 39.31 2.83 F
3650 3846 0.036306 TTCCCTTCAGAAGTTCGGCC 59.964 55.0 9.41 0.00 0.00 6.13 F
5217 5791 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.0 0.00 0.00 0.00 2.69 F
6430 7152 0.107945 GTGAGGCCAAATCGCTCTCT 60.108 55.0 5.01 0.00 31.32 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2036 2190 0.698238 AATGGTTGAGCAGCCTGGTA 59.302 50.000 0.00 0.00 32.40 3.25 R
3364 3551 2.493278 GACAATGGCACCAGCAATAACT 59.507 45.455 0.00 0.00 44.61 2.24 R
3634 3830 1.301677 GCTGGCCGAACTTCTGAAGG 61.302 60.000 20.61 5.77 0.00 3.46 R
4038 4402 1.075861 CCCCATGCCACATCATATCCA 59.924 52.381 0.00 0.00 0.00 3.41 R
5255 5829 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85 R
6642 7364 1.545582 GCAGGCAATCCAACAAAGCTA 59.454 47.619 0.00 0.00 33.74 3.32 R
7695 8907 3.853475 ACGGTTGCAACACTAGTATACC 58.147 45.455 29.55 9.28 0.00 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 0.742505 CTACTTATGTGGCCGTCCGA 59.257 55.000 0.00 0.00 34.14 4.55
66 67 2.705154 GAAAGGCATTGAATACGCGTC 58.295 47.619 18.63 1.04 0.00 5.19
70 71 0.651610 GCATTGAATACGCGTCGCTG 60.652 55.000 18.63 11.31 0.00 5.18
79 80 2.327940 GCGTCGCTGTTTTGTGCT 59.672 55.556 10.68 0.00 0.00 4.40
89 90 0.313672 GTTTTGTGCTCATGCCCGAA 59.686 50.000 0.00 0.00 38.71 4.30
93 94 0.391130 TGTGCTCATGCCCGAACTAC 60.391 55.000 0.00 0.00 38.71 2.73
111 112 0.419459 ACCTGGGAGGAGATCAAGGT 59.581 55.000 0.00 0.00 40.15 3.50
112 113 1.127343 CCTGGGAGGAGATCAAGGTC 58.873 60.000 0.00 0.00 37.67 3.85
145 146 2.171341 AGTTGTTCCGCTCTTCCTTC 57.829 50.000 0.00 0.00 0.00 3.46
147 148 2.039084 AGTTGTTCCGCTCTTCCTTCAT 59.961 45.455 0.00 0.00 0.00 2.57
152 153 4.162320 TGTTCCGCTCTTCCTTCATATCTT 59.838 41.667 0.00 0.00 0.00 2.40
179 180 3.829948 CAATGGCTGTTCAACTTGCTAG 58.170 45.455 6.16 0.00 0.00 3.42
181 182 0.166814 GGCTGTTCAACTTGCTAGCG 59.833 55.000 10.77 0.00 32.22 4.26
200 201 0.593618 GCGTGGCTCAGATCGAGATA 59.406 55.000 15.71 3.93 45.45 1.98
202 203 2.420372 GCGTGGCTCAGATCGAGATATA 59.580 50.000 15.71 0.12 45.45 0.86
211 212 7.392953 GGCTCAGATCGAGATATATCCATCATA 59.607 40.741 15.71 1.68 45.45 2.15
212 213 8.959548 GCTCAGATCGAGATATATCCATCATAT 58.040 37.037 15.71 0.00 45.45 1.78
220 221 7.041098 CGAGATATATCCATCATATCGGTCACA 60.041 40.741 9.18 0.00 39.39 3.58
229 230 2.708216 TATCGGTCACATTGTGGCAT 57.292 45.000 21.93 10.91 40.26 4.40
253 254 1.524849 GGAGGCTCGGAATTCTGCC 60.525 63.158 21.44 21.44 45.21 4.85
290 291 1.338337 CTCCTCATCCGAAGCGTACAT 59.662 52.381 0.00 0.00 0.00 2.29
292 293 1.399572 CTCATCCGAAGCGTACATCG 58.600 55.000 5.90 5.90 43.12 3.84
310 311 3.488090 GCGAGGGTGCGTGCTTAC 61.488 66.667 0.00 0.00 0.00 2.34
325 326 7.220683 GTGCGTGCTTACATTGATATGATTTTT 59.779 33.333 0.00 0.00 35.65 1.94
334 335 7.262772 ACATTGATATGATTTTTCAGCACCTG 58.737 34.615 0.00 0.00 35.65 4.00
340 341 5.534207 TGATTTTTCAGCACCTGTTCAAT 57.466 34.783 0.00 0.00 32.61 2.57
345 346 2.507484 TCAGCACCTGTTCAATTCTGG 58.493 47.619 0.00 0.00 32.61 3.86
367 368 1.269723 CCTGCAACTAGACGTGAGACA 59.730 52.381 0.00 0.00 0.00 3.41
382 383 1.136110 GAGACACCTGCTTCTAGCTCC 59.864 57.143 0.00 0.00 42.97 4.70
384 385 0.901124 ACACCTGCTTCTAGCTCCTG 59.099 55.000 0.00 0.00 42.97 3.86
390 391 1.002430 TGCTTCTAGCTCCTGTTGGTG 59.998 52.381 0.00 0.00 42.97 4.17
436 437 2.090400 TGTCTTCAGATGCTGCTGTC 57.910 50.000 0.00 0.00 37.20 3.51
440 441 2.566279 TCTTCAGATGCTGCTGTCTCTT 59.434 45.455 0.00 0.00 37.20 2.85
475 476 3.055719 GCGATGGGTGTGGTGGTG 61.056 66.667 0.00 0.00 0.00 4.17
478 479 1.530419 GATGGGTGTGGTGGTGCAA 60.530 57.895 0.00 0.00 0.00 4.08
522 526 1.294780 CGGCTTCAGAACCTCTGCT 59.705 57.895 0.00 0.00 43.95 4.24
529 533 1.070758 TCAGAACCTCTGCTTGGTGTC 59.929 52.381 0.00 0.00 43.95 3.67
535 539 1.554160 CCTCTGCTTGGTGTCTCATCT 59.446 52.381 0.00 0.00 0.00 2.90
547 551 1.144936 CTCATCTCCGGAAGTGGCC 59.855 63.158 5.23 0.00 0.00 5.36
575 579 1.664965 GCTCTTCGTCGTGTGGCTT 60.665 57.895 0.00 0.00 0.00 4.35
586 590 1.165270 GTGTGGCTTATTTGGCTCGT 58.835 50.000 0.00 0.00 0.00 4.18
673 678 2.434359 GCCCGAGACCGTTCCTTG 60.434 66.667 0.00 0.00 0.00 3.61
682 687 1.964373 CCGTTCCTTGGTGGGTTCG 60.964 63.158 0.00 0.00 36.20 3.95
685 690 1.450025 GTTCCTTGGTGGGTTCGATC 58.550 55.000 0.00 0.00 36.20 3.69
702 707 6.129062 GGTTCGATCATCGTTGATATCAAGTC 60.129 42.308 18.47 7.15 42.73 3.01
721 727 1.378762 GGCTTGTGGGGCTTGTCTA 59.621 57.895 0.00 0.00 0.00 2.59
727 733 0.396811 GTGGGGCTTGTCTACTGTGT 59.603 55.000 0.00 0.00 0.00 3.72
732 738 3.477530 GGGCTTGTCTACTGTGTCTTTT 58.522 45.455 0.00 0.00 0.00 2.27
750 756 1.732941 TTAAGCATGTTCGTCGGCAT 58.267 45.000 0.00 0.00 0.00 4.40
755 773 1.273688 CATGTTCGTCGGCATCGTAA 58.726 50.000 0.00 0.00 37.69 3.18
756 774 1.858458 CATGTTCGTCGGCATCGTAAT 59.142 47.619 0.00 0.00 37.69 1.89
757 775 1.273688 TGTTCGTCGGCATCGTAATG 58.726 50.000 0.00 0.00 37.69 1.90
758 776 1.274596 GTTCGTCGGCATCGTAATGT 58.725 50.000 0.00 0.00 35.18 2.71
759 777 1.657094 GTTCGTCGGCATCGTAATGTT 59.343 47.619 0.00 0.00 35.18 2.71
760 778 1.999048 TCGTCGGCATCGTAATGTTT 58.001 45.000 0.00 0.00 35.18 2.83
761 779 1.921887 TCGTCGGCATCGTAATGTTTC 59.078 47.619 0.00 0.00 35.18 2.78
762 780 1.656594 CGTCGGCATCGTAATGTTTCA 59.343 47.619 0.00 0.00 35.18 2.69
763 781 2.285026 CGTCGGCATCGTAATGTTTCAG 60.285 50.000 0.00 0.00 35.18 3.02
764 782 1.663643 TCGGCATCGTAATGTTTCAGC 59.336 47.619 0.00 0.00 35.18 4.26
765 783 1.665679 CGGCATCGTAATGTTTCAGCT 59.334 47.619 0.00 0.00 35.18 4.24
766 784 2.285834 CGGCATCGTAATGTTTCAGCTC 60.286 50.000 0.00 0.00 35.18 4.09
846 876 2.158813 GGATTGCATCCGGGAGACTTTA 60.159 50.000 0.00 0.00 40.13 1.85
856 886 6.302535 TCCGGGAGACTTTATGTAATTTGA 57.697 37.500 0.00 0.00 0.00 2.69
857 887 6.895782 TCCGGGAGACTTTATGTAATTTGAT 58.104 36.000 0.00 0.00 0.00 2.57
858 888 7.343357 TCCGGGAGACTTTATGTAATTTGATT 58.657 34.615 0.00 0.00 0.00 2.57
859 889 7.282224 TCCGGGAGACTTTATGTAATTTGATTG 59.718 37.037 0.00 0.00 0.00 2.67
860 890 6.912591 CGGGAGACTTTATGTAATTTGATTGC 59.087 38.462 0.00 0.00 0.00 3.56
861 891 7.201732 CGGGAGACTTTATGTAATTTGATTGCT 60.202 37.037 0.00 0.00 0.00 3.91
862 892 8.470002 GGGAGACTTTATGTAATTTGATTGCTT 58.530 33.333 0.00 0.00 0.00 3.91
863 893 9.294030 GGAGACTTTATGTAATTTGATTGCTTG 57.706 33.333 0.00 0.00 0.00 4.01
876 906 8.667076 ATTTGATTGCTTGATTTATAAAGGCC 57.333 30.769 3.94 0.00 0.00 5.19
877 907 5.830912 TGATTGCTTGATTTATAAAGGCCG 58.169 37.500 3.94 0.00 0.00 6.13
878 908 4.647424 TTGCTTGATTTATAAAGGCCGG 57.353 40.909 0.00 0.00 0.00 6.13
879 909 2.360801 TGCTTGATTTATAAAGGCCGGC 59.639 45.455 21.18 21.18 0.00 6.13
880 910 2.360801 GCTTGATTTATAAAGGCCGGCA 59.639 45.455 30.85 7.96 0.00 5.69
881 911 3.005791 GCTTGATTTATAAAGGCCGGCAT 59.994 43.478 30.85 21.35 0.00 4.40
882 912 4.501400 GCTTGATTTATAAAGGCCGGCATT 60.501 41.667 30.85 26.91 0.00 3.56
883 913 4.846779 TGATTTATAAAGGCCGGCATTC 57.153 40.909 28.52 13.45 0.00 2.67
884 914 4.469657 TGATTTATAAAGGCCGGCATTCT 58.530 39.130 28.52 19.38 0.00 2.40
885 915 4.518970 TGATTTATAAAGGCCGGCATTCTC 59.481 41.667 28.52 16.09 0.00 2.87
886 916 3.857157 TTATAAAGGCCGGCATTCTCT 57.143 42.857 28.52 14.56 0.00 3.10
887 917 2.262423 ATAAAGGCCGGCATTCTCTC 57.738 50.000 28.52 7.77 0.00 3.20
888 918 1.204146 TAAAGGCCGGCATTCTCTCT 58.796 50.000 28.52 13.74 0.00 3.10
889 919 0.107459 AAAGGCCGGCATTCTCTCTC 60.107 55.000 28.52 6.07 0.00 3.20
890 920 0.980231 AAGGCCGGCATTCTCTCTCT 60.980 55.000 30.85 9.76 0.00 3.10
891 921 0.105964 AGGCCGGCATTCTCTCTCTA 60.106 55.000 30.85 0.00 0.00 2.43
892 922 0.753262 GGCCGGCATTCTCTCTCTAA 59.247 55.000 30.85 0.00 0.00 2.10
893 923 1.139058 GGCCGGCATTCTCTCTCTAAA 59.861 52.381 30.85 0.00 0.00 1.85
894 924 2.420129 GGCCGGCATTCTCTCTCTAAAA 60.420 50.000 30.85 0.00 0.00 1.52
895 925 3.270877 GCCGGCATTCTCTCTCTAAAAA 58.729 45.455 24.80 0.00 0.00 1.94
916 946 3.923017 AAAAGAAGGTTCATCGCAAGG 57.077 42.857 0.00 0.00 38.47 3.61
917 947 2.568623 AAGAAGGTTCATCGCAAGGT 57.431 45.000 0.00 0.00 38.47 3.50
918 948 2.568623 AGAAGGTTCATCGCAAGGTT 57.431 45.000 0.00 0.00 38.47 3.50
919 949 2.427506 AGAAGGTTCATCGCAAGGTTC 58.572 47.619 0.00 0.00 38.47 3.62
920 950 1.128692 GAAGGTTCATCGCAAGGTTCG 59.871 52.381 0.00 0.00 38.47 3.95
921 951 0.320374 AGGTTCATCGCAAGGTTCGA 59.680 50.000 0.00 0.00 40.45 3.71
922 952 0.442699 GGTTCATCGCAAGGTTCGAC 59.557 55.000 0.00 0.00 38.88 4.20
923 953 1.429463 GTTCATCGCAAGGTTCGACT 58.571 50.000 0.00 0.00 38.88 4.18
924 954 2.602878 GTTCATCGCAAGGTTCGACTA 58.397 47.619 0.00 0.00 38.88 2.59
925 955 2.991190 GTTCATCGCAAGGTTCGACTAA 59.009 45.455 0.00 0.00 38.88 2.24
926 956 3.306917 TCATCGCAAGGTTCGACTAAA 57.693 42.857 0.00 0.00 38.88 1.85
927 957 3.655486 TCATCGCAAGGTTCGACTAAAA 58.345 40.909 0.00 0.00 38.88 1.52
928 958 4.059511 TCATCGCAAGGTTCGACTAAAAA 58.940 39.130 0.00 0.00 38.88 1.94
952 982 2.841317 ACCAAAACCGGTCCCTCC 59.159 61.111 8.04 0.00 32.11 4.30
953 983 2.035155 CCAAAACCGGTCCCTCCC 59.965 66.667 8.04 0.00 0.00 4.30
986 1016 1.664321 GGGACGCATCTACCGACAGT 61.664 60.000 0.00 0.00 0.00 3.55
1049 1079 2.592308 GCCTGATCCCACTCCCAC 59.408 66.667 0.00 0.00 0.00 4.61
1058 1096 3.322466 CACTCCCACCGCCTCCTT 61.322 66.667 0.00 0.00 0.00 3.36
1095 1133 0.255604 ATTCATCCACATCCGCCACA 59.744 50.000 0.00 0.00 0.00 4.17
1180 1223 3.489513 CCCCACTTCCCGGATCCC 61.490 72.222 0.73 0.00 0.00 3.85
1306 1357 2.821366 CAAGAATGCCCTCGCGCT 60.821 61.111 5.56 0.00 38.08 5.92
1311 1362 3.680620 AATGCCCTCGCGCTGCTTA 62.681 57.895 5.56 0.00 38.08 3.09
1314 1365 2.202932 CCCTCGCGCTGCTTATGT 60.203 61.111 5.56 0.00 0.00 2.29
1322 1373 1.705337 CGCTGCTTATGTTGTCGGGG 61.705 60.000 0.00 0.00 0.00 5.73
1342 1393 4.278956 GGCATTTCGTCGACCACT 57.721 55.556 10.58 0.00 0.00 4.00
1404 1456 2.034221 GCCCTTTGTTCCTCGCCT 59.966 61.111 0.00 0.00 0.00 5.52
1408 1460 0.613777 CCTTTGTTCCTCGCCTAGGT 59.386 55.000 11.31 0.00 46.62 3.08
1410 1462 2.552373 CCTTTGTTCCTCGCCTAGGTTT 60.552 50.000 11.31 0.00 46.62 3.27
1411 1463 2.943036 TTGTTCCTCGCCTAGGTTTT 57.057 45.000 11.31 0.00 46.62 2.43
1442 1577 0.033894 AAACGGTTCTTGTGGTGGGT 60.034 50.000 0.00 0.00 0.00 4.51
1463 1598 1.271379 AGTTGTTGGATCACGTCGCTA 59.729 47.619 0.00 0.00 0.00 4.26
1474 1609 3.372060 TCACGTCGCTATCTGCTTATTG 58.628 45.455 0.00 0.00 40.11 1.90
1477 1612 4.032900 CACGTCGCTATCTGCTTATTGTTT 59.967 41.667 0.00 0.00 40.11 2.83
1479 1614 4.032900 CGTCGCTATCTGCTTATTGTTTGT 59.967 41.667 0.00 0.00 40.11 2.83
1490 1625 8.349983 TCTGCTTATTGTTTGTAGTCCTTTTTC 58.650 33.333 0.00 0.00 0.00 2.29
1497 1632 7.234661 TGTTTGTAGTCCTTTTTCTTTTGGT 57.765 32.000 0.00 0.00 0.00 3.67
1498 1633 7.672240 TGTTTGTAGTCCTTTTTCTTTTGGTT 58.328 30.769 0.00 0.00 0.00 3.67
1499 1634 8.804204 TGTTTGTAGTCCTTTTTCTTTTGGTTA 58.196 29.630 0.00 0.00 0.00 2.85
1501 1636 9.642327 TTTGTAGTCCTTTTTCTTTTGGTTAAC 57.358 29.630 0.00 0.00 0.00 2.01
1526 1669 9.587772 ACAGATGATAATACAACTGACAGTTAC 57.412 33.333 20.17 7.13 41.14 2.50
1527 1670 8.746751 CAGATGATAATACAACTGACAGTTACG 58.253 37.037 20.17 11.73 41.14 3.18
1529 1672 5.808540 TGATAATACAACTGACAGTTACGGC 59.191 40.000 20.17 7.43 36.03 5.68
1530 1673 3.671008 ATACAACTGACAGTTACGGCA 57.329 42.857 20.17 0.24 36.03 5.69
1531 1674 2.543777 ACAACTGACAGTTACGGCAT 57.456 45.000 20.17 0.00 36.03 4.40
1532 1675 3.671008 ACAACTGACAGTTACGGCATA 57.329 42.857 20.17 0.00 36.03 3.14
1533 1676 3.323243 ACAACTGACAGTTACGGCATAC 58.677 45.455 20.17 0.00 36.03 2.39
1534 1677 3.243941 ACAACTGACAGTTACGGCATACA 60.244 43.478 20.17 0.00 36.03 2.29
1535 1678 3.887621 ACTGACAGTTACGGCATACAT 57.112 42.857 1.07 0.00 0.00 2.29
1536 1679 4.202245 ACTGACAGTTACGGCATACATT 57.798 40.909 1.07 0.00 0.00 2.71
1537 1680 4.181578 ACTGACAGTTACGGCATACATTC 58.818 43.478 1.07 0.00 0.00 2.67
1538 1681 4.081642 ACTGACAGTTACGGCATACATTCT 60.082 41.667 1.07 0.00 0.00 2.40
1539 1682 4.180817 TGACAGTTACGGCATACATTCTG 58.819 43.478 0.00 0.00 0.00 3.02
1540 1683 4.181578 GACAGTTACGGCATACATTCTGT 58.818 43.478 0.00 0.00 37.56 3.41
1541 1684 4.181578 ACAGTTACGGCATACATTCTGTC 58.818 43.478 0.00 0.00 30.65 3.51
1542 1685 4.180817 CAGTTACGGCATACATTCTGTCA 58.819 43.478 0.00 0.00 0.00 3.58
1543 1686 4.268644 CAGTTACGGCATACATTCTGTCAG 59.731 45.833 0.00 0.00 0.00 3.51
1544 1687 4.081642 AGTTACGGCATACATTCTGTCAGT 60.082 41.667 0.00 0.00 0.00 3.41
1545 1688 3.334583 ACGGCATACATTCTGTCAGTT 57.665 42.857 0.00 0.00 0.00 3.16
1546 1689 3.002791 ACGGCATACATTCTGTCAGTTG 58.997 45.455 0.00 2.20 0.00 3.16
1547 1690 3.261580 CGGCATACATTCTGTCAGTTGA 58.738 45.455 11.03 0.00 0.00 3.18
1548 1691 3.873361 CGGCATACATTCTGTCAGTTGAT 59.127 43.478 11.03 0.00 0.00 2.57
1549 1692 5.049828 CGGCATACATTCTGTCAGTTGATA 58.950 41.667 11.03 0.00 0.00 2.15
1550 1693 5.523552 CGGCATACATTCTGTCAGTTGATAA 59.476 40.000 11.03 0.00 0.00 1.75
1551 1694 6.203530 CGGCATACATTCTGTCAGTTGATAAT 59.796 38.462 11.03 0.00 0.00 1.28
1552 1695 7.384932 CGGCATACATTCTGTCAGTTGATAATA 59.615 37.037 11.03 0.00 0.00 0.98
1553 1696 8.499162 GGCATACATTCTGTCAGTTGATAATAC 58.501 37.037 11.03 0.00 0.00 1.89
1554 1697 9.045223 GCATACATTCTGTCAGTTGATAATACA 57.955 33.333 11.03 0.00 0.00 2.29
1558 1701 9.322773 ACATTCTGTCAGTTGATAATACAGATG 57.677 33.333 11.03 7.59 44.27 2.90
1559 1702 9.538508 CATTCTGTCAGTTGATAATACAGATGA 57.461 33.333 4.48 0.00 44.27 2.92
1584 1727 1.075374 ACATTCTGTTAGGGCCTTGCA 59.925 47.619 13.45 10.59 0.00 4.08
1594 1737 1.512694 GGCCTTGCATGGTGCTTAC 59.487 57.895 19.05 2.24 45.31 2.34
1596 1739 1.250154 GCCTTGCATGGTGCTTACCA 61.250 55.000 19.05 1.11 45.31 3.25
1597 1740 0.813184 CCTTGCATGGTGCTTACCAG 59.187 55.000 10.48 0.00 45.31 4.00
1598 1741 1.538047 CTTGCATGGTGCTTACCAGT 58.462 50.000 5.33 0.00 45.31 4.00
1599 1742 1.888512 CTTGCATGGTGCTTACCAGTT 59.111 47.619 5.33 0.00 45.31 3.16
1600 1743 2.869101 TGCATGGTGCTTACCAGTTA 57.131 45.000 5.33 0.00 45.31 2.24
1601 1744 2.432444 TGCATGGTGCTTACCAGTTAC 58.568 47.619 5.33 0.00 45.31 2.50
1610 1762 4.561606 GTGCTTACCAGTTACGTCATACAG 59.438 45.833 0.00 0.00 0.00 2.74
1668 1821 8.034804 GGTGCTGGTCAAATTAAGTCAATTAAT 58.965 33.333 0.00 0.00 44.34 1.40
1681 1834 9.866655 TTAAGTCAATTAATATGCTCCCTGAAT 57.133 29.630 0.00 0.00 0.00 2.57
1687 1840 9.288576 CAATTAATATGCTCCCTGAATGTCTTA 57.711 33.333 0.00 0.00 0.00 2.10
1698 1851 5.268544 CCTGAATGTCTTAAATGCATGTCG 58.731 41.667 0.00 0.00 0.00 4.35
1705 1858 0.179176 TAAATGCATGTCGCCGTTGC 60.179 50.000 0.00 3.24 41.33 4.17
1735 1888 6.112734 ACATGAATGTAGAAATAGTTCCGCA 58.887 36.000 0.00 0.00 39.68 5.69
1769 1922 5.587289 TGATTTAGCAAGTTTGTTGGTGTC 58.413 37.500 0.00 0.00 0.00 3.67
1791 1944 2.721603 GTGACGCTATTGACTATGCTCG 59.278 50.000 0.00 0.00 0.00 5.03
1799 1952 0.461548 TGACTATGCTCGAGCCTTGG 59.538 55.000 33.23 23.65 41.18 3.61
1812 1965 2.952310 GAGCCTTGGGATGTTTGGTATC 59.048 50.000 0.00 0.00 0.00 2.24
1817 1970 5.505780 CCTTGGGATGTTTGGTATCACTAA 58.494 41.667 0.00 0.00 0.00 2.24
1831 1984 9.747898 TTGGTATCACTAAAATGGTATTTCTGT 57.252 29.630 0.00 0.00 0.00 3.41
1856 2009 9.245284 GTATTTGTGTTTTTGTGTTTTCTTTCG 57.755 29.630 0.00 0.00 0.00 3.46
1857 2010 7.464830 TTTGTGTTTTTGTGTTTTCTTTCGA 57.535 28.000 0.00 0.00 0.00 3.71
1858 2011 6.683090 TGTGTTTTTGTGTTTTCTTTCGAG 57.317 33.333 0.00 0.00 0.00 4.04
1859 2012 6.210078 TGTGTTTTTGTGTTTTCTTTCGAGT 58.790 32.000 0.00 0.00 0.00 4.18
1860 2013 6.361214 TGTGTTTTTGTGTTTTCTTTCGAGTC 59.639 34.615 0.00 0.00 0.00 3.36
1861 2014 6.361214 GTGTTTTTGTGTTTTCTTTCGAGTCA 59.639 34.615 0.00 0.00 0.00 3.41
1874 2028 7.639162 TCTTTCGAGTCAATTACAGAGAAAC 57.361 36.000 0.00 0.00 0.00 2.78
1930 2084 6.918022 GGATGATAGTAAAATTGCTTTTCGGG 59.082 38.462 0.00 0.00 36.09 5.14
1937 2091 2.435372 ATTGCTTTTCGGGGCTCATA 57.565 45.000 0.00 0.00 0.00 2.15
2036 2190 2.625639 ACTGACCCCTCTGATTCTTGT 58.374 47.619 0.00 0.00 0.00 3.16
2099 2253 7.283807 CCAATGTGATTGAATCAGAGGAACATA 59.716 37.037 8.33 0.00 42.83 2.29
2102 2256 7.799081 TGTGATTGAATCAGAGGAACATATCT 58.201 34.615 8.33 0.00 40.53 1.98
2179 2333 3.141767 ACTTCTGTTTACTCTTGGGCC 57.858 47.619 0.00 0.00 0.00 5.80
2197 2352 4.124238 GGGCCAAACTAAACCTGTTTTTC 58.876 43.478 4.39 0.00 35.71 2.29
2311 2468 2.162681 CTGGAACAAGGCCTAAAGGTG 58.837 52.381 5.16 1.80 38.70 4.00
2349 2506 3.514645 GACCTTTTGTCGCTTCCGTATA 58.485 45.455 0.00 0.00 33.49 1.47
2354 2511 5.751990 CCTTTTGTCGCTTCCGTATATAACT 59.248 40.000 0.00 0.00 35.54 2.24
2357 2514 8.700722 TTTTGTCGCTTCCGTATATAACTTTA 57.299 30.769 0.00 0.00 35.54 1.85
2365 2522 9.269453 GCTTCCGTATATAACTTTATCACCTTT 57.731 33.333 0.00 0.00 0.00 3.11
2522 2679 0.598419 TCTGCTGTGTCACTCGCTTG 60.598 55.000 15.51 10.23 0.00 4.01
2555 2712 7.483307 TGCAAATTTAGCTGAGTCCATTAATC 58.517 34.615 0.00 0.00 0.00 1.75
2721 2878 9.185680 GTGTTTATTGTATACCCTTTGAATCCT 57.814 33.333 0.00 0.00 0.00 3.24
2769 2926 5.049129 GCTCTGAAGTGTAAAGCAAAGATGT 60.049 40.000 0.00 0.00 33.21 3.06
2860 3026 0.320374 CCTCTGTCGCCAGGTACAAA 59.680 55.000 0.00 0.00 39.31 2.83
2902 3068 5.047519 TCTGGGAAAACTGCAGTACTACTAC 60.048 44.000 22.01 8.24 0.00 2.73
3073 3259 3.247173 GCATTTCTATCTGGCAGTCTTCG 59.753 47.826 15.27 0.39 0.00 3.79
3081 3267 2.226437 TCTGGCAGTCTTCGCAAAATTC 59.774 45.455 15.27 0.00 0.00 2.17
3098 3284 4.431416 AATTCGAATGTAGCACCCCATA 57.569 40.909 12.25 0.00 0.00 2.74
3148 3334 4.497473 TGGCACCTCGACAAAATTAAAG 57.503 40.909 0.00 0.00 0.00 1.85
3222 3408 2.488952 TGACAGCGTGAAAAGCACATA 58.511 42.857 0.00 0.00 46.50 2.29
3245 3431 4.332428 AGACACGGGGCATATTTACTAC 57.668 45.455 0.00 0.00 0.00 2.73
3248 3434 3.198200 ACACGGGGCATATTTACTACACA 59.802 43.478 0.00 0.00 0.00 3.72
3285 3471 9.952030 TTGACTATCTATTGGTCAAACATTACA 57.048 29.630 5.45 0.00 43.84 2.41
3286 3472 9.952030 TGACTATCTATTGGTCAAACATTACAA 57.048 29.630 0.00 0.00 37.10 2.41
3328 3514 2.016318 TGTTTCATGGGCGCTTCATAG 58.984 47.619 7.64 7.24 0.00 2.23
3364 3551 3.719268 ACCATTGTTGCCACTATCTGA 57.281 42.857 0.00 0.00 0.00 3.27
3394 3581 2.890311 TGGTGCCATTGTCTGTTTTAGG 59.110 45.455 0.00 0.00 0.00 2.69
3634 3830 6.145535 GTCACTGTTCTGAATTGTCATTTCC 58.854 40.000 5.28 0.00 31.85 3.13
3650 3846 0.036306 TTCCCTTCAGAAGTTCGGCC 59.964 55.000 9.41 0.00 0.00 6.13
3854 4213 6.899393 AGACTTGCTGGAAATCAAAATGTA 57.101 33.333 0.00 0.00 0.00 2.29
3931 4295 2.638480 TTTGTACTGCCTGCTTCAGT 57.362 45.000 10.09 10.09 45.71 3.41
4038 4402 2.050144 TCCTGCTCTTTCTGGACACTT 58.950 47.619 0.00 0.00 0.00 3.16
4224 4789 6.729428 AGTACATACTACTAGTCAGGTTGGT 58.271 40.000 0.00 2.60 34.13 3.67
4262 4827 3.305608 GCTGCCATAAAACAAAGTGAGCT 60.306 43.478 0.00 0.00 0.00 4.09
4317 4882 5.009110 GGTTAAAGGAGAATCAGGCATTAGC 59.991 44.000 0.00 0.00 36.25 3.09
4644 5213 4.097589 TCATGATGGCGTGATATTTGCAAA 59.902 37.500 15.44 15.44 35.19 3.68
4739 5310 9.846248 GTCAATTAAGTGATTAAGCATTGAGTT 57.154 29.630 9.08 0.00 0.00 3.01
4834 5408 4.741321 ACTCGATAACGGATTTGGGTTA 57.259 40.909 0.00 0.00 40.21 2.85
4838 5412 6.037830 ACTCGATAACGGATTTGGGTTATTTG 59.962 38.462 0.00 0.00 38.93 2.32
4848 5422 8.679100 CGGATTTGGGTTATTTGTTTAGACATA 58.321 33.333 0.00 0.00 35.29 2.29
4882 5456 4.908736 TGCGTTTTCTATAGCTGAATTGC 58.091 39.130 0.00 0.00 0.00 3.56
4885 5459 4.957967 CGTTTTCTATAGCTGAATTGCACG 59.042 41.667 0.00 0.00 34.99 5.34
4958 5532 9.793252 CTTATTCCATTGAATTCTCGATTTGTT 57.207 29.630 7.05 0.00 41.44 2.83
5151 5725 8.962884 ACATTTTTGCTCAACCTTAAGAAAAT 57.037 26.923 3.36 3.07 0.00 1.82
5152 5726 9.394767 ACATTTTTGCTCAACCTTAAGAAAATT 57.605 25.926 3.36 0.00 0.00 1.82
5159 5733 9.912634 TGCTCAACCTTAAGAAAATTATTGAAG 57.087 29.630 3.36 0.00 0.00 3.02
5160 5734 9.358872 GCTCAACCTTAAGAAAATTATTGAAGG 57.641 33.333 3.36 0.00 38.34 3.46
5161 5735 9.860898 CTCAACCTTAAGAAAATTATTGAAGGG 57.139 33.333 3.36 0.00 36.99 3.95
5162 5736 8.811994 TCAACCTTAAGAAAATTATTGAAGGGG 58.188 33.333 3.36 0.00 36.99 4.79
5163 5737 8.811994 CAACCTTAAGAAAATTATTGAAGGGGA 58.188 33.333 3.36 0.00 36.99 4.81
5164 5738 8.595362 ACCTTAAGAAAATTATTGAAGGGGAG 57.405 34.615 3.36 0.00 36.99 4.30
5165 5739 7.124298 ACCTTAAGAAAATTATTGAAGGGGAGC 59.876 37.037 3.36 0.00 36.99 4.70
5166 5740 5.939764 AAGAAAATTATTGAAGGGGAGCC 57.060 39.130 0.00 0.00 0.00 4.70
5167 5741 5.212472 AGAAAATTATTGAAGGGGAGCCT 57.788 39.130 0.00 0.00 0.00 4.58
5168 5742 5.593786 AGAAAATTATTGAAGGGGAGCCTT 58.406 37.500 0.00 0.00 0.00 4.35
5169 5743 5.423290 AGAAAATTATTGAAGGGGAGCCTTG 59.577 40.000 0.00 0.00 0.00 3.61
5170 5744 2.826674 TTATTGAAGGGGAGCCTTGG 57.173 50.000 0.00 0.00 0.00 3.61
5171 5745 0.258774 TATTGAAGGGGAGCCTTGGC 59.741 55.000 2.97 2.97 0.00 4.52
5172 5746 2.843912 ATTGAAGGGGAGCCTTGGCG 62.844 60.000 5.95 0.00 0.00 5.69
5180 5754 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
5181 5755 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
5182 5756 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
5183 5757 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
5184 5758 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
5185 5759 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
5186 5760 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
5200 5774 3.435590 GCTGCTGCTTTGTGACCA 58.564 55.556 8.53 0.00 36.03 4.02
5201 5775 1.962144 GCTGCTGCTTTGTGACCAT 59.038 52.632 8.53 0.00 36.03 3.55
5202 5776 0.388134 GCTGCTGCTTTGTGACCATG 60.388 55.000 8.53 0.00 36.03 3.66
5203 5777 1.241165 CTGCTGCTTTGTGACCATGA 58.759 50.000 0.00 0.00 0.00 3.07
5204 5778 1.199327 CTGCTGCTTTGTGACCATGAG 59.801 52.381 0.00 0.00 0.00 2.90
5205 5779 0.524862 GCTGCTTTGTGACCATGAGG 59.475 55.000 0.00 0.00 42.21 3.86
5215 5789 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
5216 5790 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
5217 5791 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
5218 5792 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
5219 5793 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
5220 5794 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
5221 5795 0.680061 GAGGTCACGGGTTCAAGTCT 59.320 55.000 0.00 0.00 0.00 3.24
5222 5796 1.070289 GAGGTCACGGGTTCAAGTCTT 59.930 52.381 0.00 0.00 0.00 3.01
5223 5797 1.202651 AGGTCACGGGTTCAAGTCTTG 60.203 52.381 6.21 6.21 0.00 3.02
5224 5798 1.226746 GTCACGGGTTCAAGTCTTGG 58.773 55.000 12.66 0.00 0.00 3.61
5225 5799 1.124780 TCACGGGTTCAAGTCTTGGA 58.875 50.000 12.66 0.30 0.00 3.53
5226 5800 1.487142 TCACGGGTTCAAGTCTTGGAA 59.513 47.619 12.66 3.49 0.00 3.53
5227 5801 2.092861 TCACGGGTTCAAGTCTTGGAAA 60.093 45.455 12.66 0.00 0.00 3.13
5228 5802 2.032924 CACGGGTTCAAGTCTTGGAAAC 59.967 50.000 12.66 10.07 0.00 2.78
5229 5803 2.294074 CGGGTTCAAGTCTTGGAAACA 58.706 47.619 12.66 0.00 32.36 2.83
5230 5804 2.290641 CGGGTTCAAGTCTTGGAAACAG 59.709 50.000 12.66 5.83 44.54 3.16
5231 5805 2.034685 GGGTTCAAGTCTTGGAAACAGC 59.965 50.000 12.66 2.46 44.54 4.40
5232 5806 2.034685 GGTTCAAGTCTTGGAAACAGCC 59.965 50.000 12.66 0.98 44.54 4.85
5233 5807 1.981256 TCAAGTCTTGGAAACAGCCC 58.019 50.000 12.66 0.00 44.54 5.19
5234 5808 0.961753 CAAGTCTTGGAAACAGCCCC 59.038 55.000 4.52 0.00 44.54 5.80
5235 5809 0.853530 AAGTCTTGGAAACAGCCCCT 59.146 50.000 0.00 0.00 44.54 4.79
5236 5810 0.853530 AGTCTTGGAAACAGCCCCTT 59.146 50.000 0.00 0.00 44.54 3.95
5237 5811 0.961753 GTCTTGGAAACAGCCCCTTG 59.038 55.000 0.00 0.00 44.54 3.61
5238 5812 0.827507 TCTTGGAAACAGCCCCTTGC 60.828 55.000 0.00 0.00 44.54 4.01
5239 5813 1.075674 TTGGAAACAGCCCCTTGCA 60.076 52.632 0.00 0.00 44.54 4.08
5240 5814 1.114722 TTGGAAACAGCCCCTTGCAG 61.115 55.000 0.00 0.00 44.54 4.41
5241 5815 1.228552 GGAAACAGCCCCTTGCAGA 60.229 57.895 0.00 0.00 44.83 4.26
5242 5816 0.827507 GGAAACAGCCCCTTGCAGAA 60.828 55.000 0.00 0.00 44.83 3.02
5243 5817 1.039856 GAAACAGCCCCTTGCAGAAA 58.960 50.000 0.00 0.00 44.83 2.52
5244 5818 1.412343 GAAACAGCCCCTTGCAGAAAA 59.588 47.619 0.00 0.00 44.83 2.29
5245 5819 1.720781 AACAGCCCCTTGCAGAAAAT 58.279 45.000 0.00 0.00 44.83 1.82
5246 5820 0.971386 ACAGCCCCTTGCAGAAAATG 59.029 50.000 0.00 0.00 44.83 2.32
5247 5821 0.971386 CAGCCCCTTGCAGAAAATGT 59.029 50.000 0.00 0.00 44.83 2.71
5248 5822 2.170166 CAGCCCCTTGCAGAAAATGTA 58.830 47.619 0.00 0.00 44.83 2.29
5249 5823 2.165030 CAGCCCCTTGCAGAAAATGTAG 59.835 50.000 0.00 0.00 44.83 2.74
5250 5824 1.478105 GCCCCTTGCAGAAAATGTAGG 59.522 52.381 0.00 0.00 40.77 3.18
5251 5825 2.102578 CCCCTTGCAGAAAATGTAGGG 58.897 52.381 8.63 8.63 45.49 3.53
5255 5829 5.064441 CCTTGCAGAAAATGTAGGGAAAG 57.936 43.478 0.00 0.00 42.51 2.62
5256 5830 4.082026 CCTTGCAGAAAATGTAGGGAAAGG 60.082 45.833 0.00 0.00 42.51 3.11
5257 5831 2.825532 TGCAGAAAATGTAGGGAAAGGC 59.174 45.455 0.00 0.00 0.00 4.35
5258 5832 3.092301 GCAGAAAATGTAGGGAAAGGCT 58.908 45.455 0.00 0.00 0.00 4.58
5259 5833 3.119352 GCAGAAAATGTAGGGAAAGGCTG 60.119 47.826 0.00 0.00 0.00 4.85
5260 5834 3.092301 AGAAAATGTAGGGAAAGGCTGC 58.908 45.455 0.00 0.00 0.00 5.25
5261 5835 1.463674 AAATGTAGGGAAAGGCTGCG 58.536 50.000 0.00 0.00 0.00 5.18
5262 5836 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
5263 5837 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
5264 5838 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
5265 5839 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
5266 5840 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
5267 5841 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
5268 5842 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
5269 5843 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
5270 5844 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
5271 5845 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
5272 5846 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
5273 5847 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
5274 5848 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
5275 5849 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
5276 5850 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
5277 5851 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
5278 5852 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
5279 5853 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
5280 5854 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
5281 5855 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
5286 5860 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
5287 5861 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
5288 5862 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
5289 5863 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
5290 5864 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
5291 5865 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
5292 5866 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
5293 5867 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
5294 5868 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
5295 5869 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
5296 5870 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
5297 5871 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
5298 5872 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
5299 5873 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
5300 5874 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
5301 5875 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
5302 5876 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
5303 5877 2.204151 CCCTTCCCTGGACCCTGT 60.204 66.667 0.00 0.00 0.00 4.00
5304 5878 2.606587 CCCTTCCCTGGACCCTGTG 61.607 68.421 0.00 0.00 0.00 3.66
5305 5879 2.352805 CTTCCCTGGACCCTGTGC 59.647 66.667 0.00 0.00 0.00 4.57
5306 5880 2.449518 TTCCCTGGACCCTGTGCA 60.450 61.111 0.00 0.00 32.07 4.57
5307 5881 2.067932 CTTCCCTGGACCCTGTGCAA 62.068 60.000 0.00 0.00 32.71 4.08
5308 5882 2.034687 CCCTGGACCCTGTGCAAG 59.965 66.667 0.00 0.00 32.71 4.01
5309 5883 2.674380 CCTGGACCCTGTGCAAGC 60.674 66.667 0.00 0.00 32.71 4.01
5310 5884 2.113774 CTGGACCCTGTGCAAGCA 59.886 61.111 0.00 0.00 32.71 3.91
5311 5885 1.970114 CTGGACCCTGTGCAAGCAG 60.970 63.158 0.00 0.00 32.71 4.24
5328 5902 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
5329 5903 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
5330 5904 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
5331 5905 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
5332 5906 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
5333 5907 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
5339 5913 3.601685 CACCGGGCTGCCGTTTTT 61.602 61.111 13.40 0.00 0.00 1.94
5389 5964 1.609061 CCTTTGGCAGAGTCATGTCGT 60.609 52.381 4.18 0.00 0.00 4.34
5390 5965 1.728971 CTTTGGCAGAGTCATGTCGTC 59.271 52.381 0.00 0.00 0.00 4.20
5688 6373 3.941483 AGCTTGATGAAAACTATGTCCCG 59.059 43.478 0.00 0.00 0.00 5.14
5697 6382 0.830648 ACTATGTCCCGGACACCATG 59.169 55.000 22.79 14.22 45.65 3.66
5723 6409 7.419172 GCTTATATGGACTGGGAGGGATTATAC 60.419 44.444 0.00 0.00 0.00 1.47
5724 6410 3.717507 TGGACTGGGAGGGATTATACA 57.282 47.619 0.00 0.00 0.00 2.29
5744 6430 3.319405 ACAATACGTGGCAATGTTCCAAA 59.681 39.130 0.00 0.00 35.01 3.28
5745 6431 3.848272 ATACGTGGCAATGTTCCAAAG 57.152 42.857 0.00 0.00 35.01 2.77
5826 6519 6.653020 TGGTGTGATATCTAAGCAATTCAGT 58.347 36.000 3.98 0.00 0.00 3.41
5842 6535 7.657354 AGCAATTCAGTCTTTTTGGGTTATTTC 59.343 33.333 0.00 0.00 0.00 2.17
5889 6582 7.526860 GCCATCTCCTAAGATAGTGTGATCAAT 60.527 40.741 0.00 0.00 40.38 2.57
6125 6826 4.618927 GCTATCATGTTGCTTTTTGCTCCA 60.619 41.667 0.00 0.00 43.37 3.86
6137 6838 5.738783 GCTTTTTGCTCCATGTACCTTTCAA 60.739 40.000 0.00 0.00 38.95 2.69
6142 6843 6.418057 TGCTCCATGTACCTTTCAATTTTT 57.582 33.333 0.00 0.00 0.00 1.94
6286 7000 3.573538 TGAGACATTTTCAACCATGGTGG 59.426 43.478 20.60 17.03 45.02 4.61
6308 7022 6.148480 GTGGGTGATGATATGCTCACTTATTC 59.852 42.308 11.90 0.00 41.21 1.75
6327 7045 3.207265 TCCTACTGTTGTGCACATTGT 57.793 42.857 22.39 20.20 33.76 2.71
6341 7059 4.057432 GCACATTGTTTTGTAGCCATTGT 58.943 39.130 0.00 0.00 0.00 2.71
6424 7146 2.104111 TGGGTATAGTGAGGCCAAATCG 59.896 50.000 5.01 0.00 0.00 3.34
6430 7152 0.107945 GTGAGGCCAAATCGCTCTCT 60.108 55.000 5.01 0.00 31.32 3.10
6448 7170 3.684788 TCTCTTAAGCGCTCACCATTTTC 59.315 43.478 12.06 0.00 0.00 2.29
6642 7364 4.142038 ACTTTCATTTACCGTTGGCTTCT 58.858 39.130 0.00 0.00 0.00 2.85
6733 7460 2.171003 TGAATGGCTCTGTCTCGAGAA 58.829 47.619 18.55 6.91 32.74 2.87
6738 7465 2.094494 TGGCTCTGTCTCGAGAATCAAC 60.094 50.000 18.55 5.40 32.74 3.18
6739 7466 2.165437 GGCTCTGTCTCGAGAATCAACT 59.835 50.000 18.55 0.00 32.74 3.16
6821 7548 2.948979 CAGCAGGGTAAAGAAACACACA 59.051 45.455 0.00 0.00 0.00 3.72
6856 7583 4.643463 CATGATGATAGCAGCTTCCTCTT 58.357 43.478 0.00 0.00 0.00 2.85
6877 7604 7.067494 CCTCTTTTTATCCCTGGTGATAAACTG 59.933 40.741 20.50 17.13 43.38 3.16
7049 8011 8.359875 TGAAATTGAAAGCCTTCACCATATTA 57.640 30.769 0.00 0.00 41.34 0.98
7050 8012 8.250332 TGAAATTGAAAGCCTTCACCATATTAC 58.750 33.333 0.00 0.00 41.34 1.89
7056 8021 4.929479 AGCCTTCACCATATTACAAACCA 58.071 39.130 0.00 0.00 0.00 3.67
7068 8033 7.148018 CCATATTACAAACCAGAAGTGAAGCAT 60.148 37.037 0.00 0.00 0.00 3.79
7073 8038 3.446442 ACCAGAAGTGAAGCATCCAAT 57.554 42.857 0.00 0.00 0.00 3.16
7076 8041 4.021719 ACCAGAAGTGAAGCATCCAATTTG 60.022 41.667 0.00 0.00 0.00 2.32
7103 8068 5.064707 TCCAGTTCTGAAGAAAGTTTTGACG 59.935 40.000 1.00 0.00 35.58 4.35
7104 8069 4.730521 CAGTTCTGAAGAAAGTTTTGACGC 59.269 41.667 0.00 0.00 35.58 5.19
7108 8073 2.286833 TGAAGAAAGTTTTGACGCTCCG 59.713 45.455 0.00 0.00 0.00 4.63
7116 8081 3.374058 AGTTTTGACGCTCCGGATATTTG 59.626 43.478 3.57 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 1.668751 GCGTATTCAATGCCTTTCGGA 59.331 47.619 0.00 0.00 33.68 4.55
47 48 1.062002 CGACGCGTATTCAATGCCTTT 59.938 47.619 13.97 0.00 36.72 3.11
59 60 1.560770 CACAAAACAGCGACGCGTA 59.439 52.632 13.97 0.00 0.00 4.42
61 62 3.085010 GCACAAAACAGCGACGCG 61.085 61.111 15.18 3.53 0.00 6.01
66 67 1.005294 GGCATGAGCACAAAACAGCG 61.005 55.000 0.00 0.00 44.61 5.18
79 80 1.622607 CCCAGGTAGTTCGGGCATGA 61.623 60.000 0.00 0.00 31.89 3.07
89 90 2.359781 CCTTGATCTCCTCCCAGGTAGT 60.360 54.545 0.00 0.00 36.53 2.73
93 94 1.127343 GACCTTGATCTCCTCCCAGG 58.873 60.000 0.00 0.00 36.46 4.45
111 112 1.202879 ACAACTTGATCCCAAAGGCGA 60.203 47.619 0.00 0.00 0.00 5.54
112 113 1.247567 ACAACTTGATCCCAAAGGCG 58.752 50.000 0.00 0.00 0.00 5.52
179 180 4.854784 TCGATCTGAGCCACGCGC 62.855 66.667 5.73 0.00 37.98 6.86
181 182 0.593618 TATCTCGATCTGAGCCACGC 59.406 55.000 8.99 0.00 44.86 5.34
190 191 8.106462 ACCGATATGATGGATATATCTCGATCT 58.894 37.037 15.79 7.73 36.05 2.75
200 201 6.820152 CACAATGTGACCGATATGATGGATAT 59.180 38.462 7.78 0.00 35.23 1.63
202 203 4.999311 CACAATGTGACCGATATGATGGAT 59.001 41.667 7.78 0.00 35.23 3.41
211 212 2.708216 TATGCCACAATGTGACCGAT 57.292 45.000 15.91 3.63 35.23 4.18
212 213 2.708216 ATATGCCACAATGTGACCGA 57.292 45.000 15.91 0.00 35.23 4.69
220 221 2.041701 GCCTCCCAAATATGCCACAAT 58.958 47.619 0.00 0.00 0.00 2.71
229 230 2.777692 AGAATTCCGAGCCTCCCAAATA 59.222 45.455 0.65 0.00 0.00 1.40
253 254 2.158900 AGGAGCATCAGGTTCATTACGG 60.159 50.000 0.00 0.00 36.25 4.02
292 293 4.752879 TAAGCACGCACCCTCGCC 62.753 66.667 0.00 0.00 0.00 5.54
310 311 7.262772 ACAGGTGCTGAAAAATCATATCAATG 58.737 34.615 0.00 0.00 35.18 2.82
325 326 2.106338 TCCAGAATTGAACAGGTGCTGA 59.894 45.455 0.00 0.00 35.18 4.26
334 335 2.887152 AGTTGCAGGTCCAGAATTGAAC 59.113 45.455 0.00 0.00 0.00 3.18
340 341 1.272490 CGTCTAGTTGCAGGTCCAGAA 59.728 52.381 0.00 0.00 0.00 3.02
345 346 1.540267 TCTCACGTCTAGTTGCAGGTC 59.460 52.381 0.00 0.00 0.00 3.85
367 368 1.277557 CAACAGGAGCTAGAAGCAGGT 59.722 52.381 1.22 0.00 45.56 4.00
390 391 4.382320 TACCTTGCGGTGGCGGAC 62.382 66.667 0.00 0.00 45.18 4.79
436 437 0.400594 AAGAACCCCGGTCCAAAGAG 59.599 55.000 0.00 0.00 0.00 2.85
440 441 1.758592 CAGAAGAACCCCGGTCCAA 59.241 57.895 0.00 0.00 0.00 3.53
475 476 2.203337 TGGCTGGTGTGGTCTTGC 60.203 61.111 0.00 0.00 0.00 4.01
478 479 2.072487 ACACTGGCTGGTGTGGTCT 61.072 57.895 13.98 0.00 46.93 3.85
499 500 0.460459 GAGGTTCTGAAGCCGTAGCC 60.460 60.000 15.37 0.00 41.25 3.93
522 526 1.550524 CTTCCGGAGATGAGACACCAA 59.449 52.381 3.34 0.00 0.00 3.67
529 533 1.144936 GGCCACTTCCGGAGATGAG 59.855 63.158 16.51 8.77 0.00 2.90
547 551 4.521062 CGAAGAGCCAGGGCCTCG 62.521 72.222 0.95 9.43 43.17 4.63
575 579 4.537135 AGTTCTCTTGACGAGCCAAATA 57.463 40.909 0.00 0.00 39.70 1.40
586 590 5.665916 TCACATGCTCATAGTTCTCTTGA 57.334 39.130 0.00 0.00 0.00 3.02
600 605 4.498894 TCAGATTGGAAGATCACATGCT 57.501 40.909 0.00 0.00 0.00 3.79
667 672 1.060729 TGATCGAACCCACCAAGGAA 58.939 50.000 0.00 0.00 41.22 3.36
671 676 0.611200 ACGATGATCGAACCCACCAA 59.389 50.000 22.88 0.00 43.74 3.67
673 678 1.006832 CAACGATGATCGAACCCACC 58.993 55.000 22.88 0.00 43.74 4.61
682 687 4.090642 GCCGACTTGATATCAACGATGATC 59.909 45.833 22.91 0.28 42.75 2.92
685 690 3.384668 AGCCGACTTGATATCAACGATG 58.615 45.455 22.91 13.29 30.10 3.84
702 707 2.463589 TAGACAAGCCCCACAAGCCG 62.464 60.000 0.00 0.00 0.00 5.52
721 727 4.574828 ACGAACATGCTTAAAAGACACAGT 59.425 37.500 0.00 0.00 0.00 3.55
727 733 2.158841 GCCGACGAACATGCTTAAAAGA 59.841 45.455 0.00 0.00 0.00 2.52
732 738 1.286501 GATGCCGACGAACATGCTTA 58.713 50.000 7.88 0.00 0.00 3.09
750 756 5.940192 AAACATGAGCTGAAACATTACGA 57.060 34.783 0.00 0.00 0.00 3.43
763 781 6.760770 AGACTGAATCTAGCTAAAACATGAGC 59.239 38.462 0.00 0.00 35.15 4.26
764 782 7.978414 TCAGACTGAATCTAGCTAAAACATGAG 59.022 37.037 1.64 0.00 35.15 2.90
765 783 7.840931 TCAGACTGAATCTAGCTAAAACATGA 58.159 34.615 1.64 0.00 35.15 3.07
766 784 8.386606 GTTCAGACTGAATCTAGCTAAAACATG 58.613 37.037 20.43 0.00 38.79 3.21
856 886 4.501400 GCCGGCCTTTATAAATCAAGCAAT 60.501 41.667 18.11 0.00 0.00 3.56
857 887 3.181480 GCCGGCCTTTATAAATCAAGCAA 60.181 43.478 18.11 0.00 0.00 3.91
858 888 2.360801 GCCGGCCTTTATAAATCAAGCA 59.639 45.455 18.11 0.00 0.00 3.91
859 889 2.360801 TGCCGGCCTTTATAAATCAAGC 59.639 45.455 26.77 0.43 0.00 4.01
860 890 4.853924 ATGCCGGCCTTTATAAATCAAG 57.146 40.909 26.77 0.00 0.00 3.02
861 891 4.892934 AGAATGCCGGCCTTTATAAATCAA 59.107 37.500 26.77 0.00 0.00 2.57
862 892 4.469657 AGAATGCCGGCCTTTATAAATCA 58.530 39.130 26.77 0.00 0.00 2.57
863 893 4.762251 AGAGAATGCCGGCCTTTATAAATC 59.238 41.667 26.77 5.74 0.00 2.17
864 894 4.729868 AGAGAATGCCGGCCTTTATAAAT 58.270 39.130 26.77 4.61 0.00 1.40
865 895 4.134563 GAGAGAATGCCGGCCTTTATAAA 58.865 43.478 26.77 1.65 0.00 1.40
866 896 3.391296 AGAGAGAATGCCGGCCTTTATAA 59.609 43.478 26.77 2.60 0.00 0.98
867 897 2.972713 AGAGAGAATGCCGGCCTTTATA 59.027 45.455 26.77 3.54 0.00 0.98
868 898 1.771255 AGAGAGAATGCCGGCCTTTAT 59.229 47.619 26.77 15.30 0.00 1.40
869 899 1.139058 GAGAGAGAATGCCGGCCTTTA 59.861 52.381 26.77 4.98 0.00 1.85
870 900 0.107459 GAGAGAGAATGCCGGCCTTT 60.107 55.000 26.77 18.19 0.00 3.11
871 901 0.980231 AGAGAGAGAATGCCGGCCTT 60.980 55.000 26.77 21.94 0.00 4.35
872 902 0.105964 TAGAGAGAGAATGCCGGCCT 60.106 55.000 26.77 14.60 0.00 5.19
873 903 0.753262 TTAGAGAGAGAATGCCGGCC 59.247 55.000 26.77 8.84 0.00 6.13
874 904 2.604046 TTTAGAGAGAGAATGCCGGC 57.396 50.000 22.73 22.73 0.00 6.13
895 925 3.636764 ACCTTGCGATGAACCTTCTTTTT 59.363 39.130 0.00 0.00 0.00 1.94
896 926 3.222603 ACCTTGCGATGAACCTTCTTTT 58.777 40.909 0.00 0.00 0.00 2.27
897 927 2.863809 ACCTTGCGATGAACCTTCTTT 58.136 42.857 0.00 0.00 0.00 2.52
898 928 2.568623 ACCTTGCGATGAACCTTCTT 57.431 45.000 0.00 0.00 0.00 2.52
899 929 2.427506 GAACCTTGCGATGAACCTTCT 58.572 47.619 0.00 0.00 0.00 2.85
900 930 1.128692 CGAACCTTGCGATGAACCTTC 59.871 52.381 0.00 0.00 0.00 3.46
901 931 1.156736 CGAACCTTGCGATGAACCTT 58.843 50.000 0.00 0.00 0.00 3.50
902 932 0.320374 TCGAACCTTGCGATGAACCT 59.680 50.000 0.00 0.00 32.09 3.50
903 933 0.442699 GTCGAACCTTGCGATGAACC 59.557 55.000 0.00 0.00 40.19 3.62
904 934 1.429463 AGTCGAACCTTGCGATGAAC 58.571 50.000 0.00 0.00 40.19 3.18
905 935 3.306917 TTAGTCGAACCTTGCGATGAA 57.693 42.857 0.00 0.00 40.19 2.57
906 936 3.306917 TTTAGTCGAACCTTGCGATGA 57.693 42.857 0.00 0.00 40.19 2.92
907 937 4.398549 TTTTTAGTCGAACCTTGCGATG 57.601 40.909 0.00 0.00 40.19 3.84
936 966 2.035155 GGGAGGGACCGGTTTTGG 59.965 66.667 9.42 0.00 40.11 3.28
945 975 4.437587 TCGGGACTCGGGAGGGAC 62.438 72.222 0.00 0.00 39.77 4.46
946 976 4.437587 GTCGGGACTCGGGAGGGA 62.438 72.222 0.00 0.00 39.77 4.20
947 977 4.444081 AGTCGGGACTCGGGAGGG 62.444 72.222 0.00 0.00 36.92 4.30
948 978 2.829458 GAGTCGGGACTCGGGAGG 60.829 72.222 12.62 0.00 46.93 4.30
967 997 1.065928 CTGTCGGTAGATGCGTCCC 59.934 63.158 1.23 0.00 0.00 4.46
969 999 0.589229 CGACTGTCGGTAGATGCGTC 60.589 60.000 21.78 0.00 36.00 5.19
986 1016 0.614697 TTGCTGGAGGAGGATGACGA 60.615 55.000 0.00 0.00 0.00 4.20
1049 1079 3.708220 GACGAGCAGAAGGAGGCGG 62.708 68.421 0.00 0.00 34.54 6.13
1072 1110 1.799258 GCGGATGTGGATGAATGGGC 61.799 60.000 0.00 0.00 0.00 5.36
1095 1133 3.415087 GGCAGGGCATGGAGGACT 61.415 66.667 0.00 0.00 0.00 3.85
1306 1357 1.377987 GCCCCCGACAACATAAGCA 60.378 57.895 0.00 0.00 0.00 3.91
1309 1360 2.269562 CCGCCCCCGACAACATAA 59.730 61.111 0.00 0.00 36.29 1.90
1314 1365 4.669809 AAATGCCGCCCCCGACAA 62.670 61.111 0.00 0.00 36.29 3.18
1322 1373 3.861263 GGTCGACGAAATGCCGCC 61.861 66.667 9.92 0.00 0.00 6.13
1411 1463 9.733219 CCACAAGAACCGTTTTAATTACTAAAA 57.267 29.630 0.00 0.00 37.18 1.52
1417 1469 5.009811 CCCACCACAAGAACCGTTTTAATTA 59.990 40.000 0.00 0.00 0.00 1.40
1419 1471 3.319689 CCCACCACAAGAACCGTTTTAAT 59.680 43.478 0.00 0.00 0.00 1.40
1423 1475 0.033894 ACCCACCACAAGAACCGTTT 60.034 50.000 0.00 0.00 0.00 3.60
1442 1577 1.271379 AGCGACGTGATCCAACAACTA 59.729 47.619 0.00 0.00 0.00 2.24
1463 1598 8.409358 AAAAGGACTACAAACAATAAGCAGAT 57.591 30.769 0.00 0.00 0.00 2.90
1474 1609 9.642327 TTAACCAAAAGAAAAAGGACTACAAAC 57.358 29.630 0.00 0.00 0.00 2.93
1477 1612 8.350852 TGTTAACCAAAAGAAAAAGGACTACA 57.649 30.769 2.48 0.00 0.00 2.74
1479 1614 8.810990 TCTGTTAACCAAAAGAAAAAGGACTA 57.189 30.769 2.48 0.00 0.00 2.59
1495 1630 9.378551 TGTCAGTTGTATTATCATCTGTTAACC 57.621 33.333 2.48 0.00 36.84 2.85
1501 1636 8.746751 CGTAACTGTCAGTTGTATTATCATCTG 58.253 37.037 25.41 0.00 39.11 2.90
1533 1676 9.538508 TCATCTGTATTATCAACTGACAGAATG 57.461 33.333 10.08 7.99 46.91 2.67
1594 1737 6.362551 CGGATTATTCTGTATGACGTAACTGG 59.637 42.308 0.00 0.00 0.00 4.00
1596 1739 5.919141 GCGGATTATTCTGTATGACGTAACT 59.081 40.000 0.00 0.00 0.00 2.24
1597 1740 5.688621 TGCGGATTATTCTGTATGACGTAAC 59.311 40.000 0.00 0.00 0.00 2.50
1598 1741 5.834169 TGCGGATTATTCTGTATGACGTAA 58.166 37.500 0.00 0.00 0.00 3.18
1599 1742 5.441709 TGCGGATTATTCTGTATGACGTA 57.558 39.130 0.00 0.00 0.00 3.57
1600 1743 4.316205 TGCGGATTATTCTGTATGACGT 57.684 40.909 0.00 0.00 0.00 4.34
1601 1744 5.845985 AATGCGGATTATTCTGTATGACG 57.154 39.130 0.00 0.00 34.24 4.35
1610 1762 7.480810 AGAAACCTAACAAATGCGGATTATTC 58.519 34.615 1.39 0.00 0.00 1.75
1668 1821 5.532406 GCATTTAAGACATTCAGGGAGCATA 59.468 40.000 0.00 0.00 0.00 3.14
1675 1828 5.268544 CGACATGCATTTAAGACATTCAGG 58.731 41.667 0.00 0.00 0.00 3.86
1698 1851 2.535934 TTCATGTAAATCGCAACGGC 57.464 45.000 0.00 0.00 0.00 5.68
1735 1888 6.199937 ACTTGCTAAATCATGCGAATTTCT 57.800 33.333 0.00 0.00 0.00 2.52
1769 1922 2.721603 GAGCATAGTCAATAGCGTCACG 59.278 50.000 0.00 0.00 0.00 4.35
1791 1944 2.507407 TACCAAACATCCCAAGGCTC 57.493 50.000 0.00 0.00 0.00 4.70
1799 1952 7.404671 ACCATTTTAGTGATACCAAACATCC 57.595 36.000 0.00 0.00 0.00 3.51
1831 1984 9.193133 TCGAAAGAAAACACAAAAACACAAATA 57.807 25.926 0.00 0.00 37.03 1.40
1836 1989 6.361214 TGACTCGAAAGAAAACACAAAAACAC 59.639 34.615 0.00 0.00 41.32 3.32
1855 2008 6.159988 AGGAAGTTTCTCTGTAATTGACTCG 58.840 40.000 0.00 0.00 0.00 4.18
1856 2009 7.971183 AAGGAAGTTTCTCTGTAATTGACTC 57.029 36.000 0.00 0.00 0.00 3.36
1857 2010 8.624776 CAAAAGGAAGTTTCTCTGTAATTGACT 58.375 33.333 0.00 0.00 0.00 3.41
1858 2011 8.621286 TCAAAAGGAAGTTTCTCTGTAATTGAC 58.379 33.333 0.00 0.00 0.00 3.18
1859 2012 8.746052 TCAAAAGGAAGTTTCTCTGTAATTGA 57.254 30.769 0.00 0.00 0.00 2.57
1860 2013 8.624776 ACTCAAAAGGAAGTTTCTCTGTAATTG 58.375 33.333 0.00 0.00 0.00 2.32
1861 2014 8.624776 CACTCAAAAGGAAGTTTCTCTGTAATT 58.375 33.333 0.00 0.00 0.00 1.40
1874 2028 4.096984 AGAAACACAGCACTCAAAAGGAAG 59.903 41.667 0.00 0.00 0.00 3.46
1927 2081 0.979665 AGGACATGATATGAGCCCCG 59.020 55.000 0.00 0.00 0.00 5.73
1930 2084 3.498774 ACCAAGGACATGATATGAGCC 57.501 47.619 0.00 0.00 0.00 4.70
1937 2091 3.074412 GACGACAAACCAAGGACATGAT 58.926 45.455 0.00 0.00 0.00 2.45
2036 2190 0.698238 AATGGTTGAGCAGCCTGGTA 59.302 50.000 0.00 0.00 32.40 3.25
2099 2253 3.499338 TGTGTTTGGCCATCTTCAAGAT 58.501 40.909 6.09 0.00 34.74 2.40
2102 2256 3.229293 TGATGTGTTTGGCCATCTTCAA 58.771 40.909 6.09 0.00 38.59 2.69
2179 2333 8.032451 TGGAGAAAGAAAAACAGGTTTAGTTTG 58.968 33.333 0.00 0.00 39.02 2.93
2197 2352 0.815734 CAAGCCTGCCATGGAGAAAG 59.184 55.000 18.40 6.56 0.00 2.62
2339 2496 8.828688 AAGGTGATAAAGTTATATACGGAAGC 57.171 34.615 0.00 0.00 0.00 3.86
2357 2514 8.733092 TCAAGGATCTGATATAGAAAGGTGAT 57.267 34.615 0.00 0.00 39.30 3.06
2522 2679 7.859875 GGACTCAGCTAAATTTGCAGAAATATC 59.140 37.037 0.00 2.00 31.18 1.63
2708 2865 6.152638 TCCAAGAATTAGGATTCAAAGGGT 57.847 37.500 2.41 0.00 43.35 4.34
2721 2878 6.516527 GCAAAGGACACACAATCCAAGAATTA 60.517 38.462 0.00 0.00 38.86 1.40
2805 2971 7.371159 TCTGTATAATATCAGCAACTCTTCCG 58.629 38.462 0.00 0.00 0.00 4.30
2860 3026 7.658525 TCCCAGAAACATGCATACATTAAAT 57.341 32.000 0.00 0.00 32.87 1.40
2962 3148 3.322254 CCACTAGAAGGTCAGTCTGTTGT 59.678 47.826 0.00 0.00 0.00 3.32
3073 3259 3.179048 GGGTGCTACATTCGAATTTTGC 58.821 45.455 19.41 19.41 0.00 3.68
3081 3267 4.578516 TCAAAATATGGGGTGCTACATTCG 59.421 41.667 0.00 0.00 0.00 3.34
3098 3284 8.519526 TCAAACGCACCTTATAAGAATCAAAAT 58.480 29.630 14.28 0.00 0.00 1.82
3195 3381 5.059710 GTGCTTTTCACGCTGTCATAATTTC 59.940 40.000 0.00 0.00 35.76 2.17
3222 3408 5.541101 TGTAGTAAATATGCCCCGTGTCTAT 59.459 40.000 0.00 0.00 0.00 1.98
3291 3477 9.117183 CCATGAAACATGAGATTCTATCTTTCA 57.883 33.333 12.46 1.37 40.38 2.69
3328 3514 6.109156 ACAATGGTACCCCTTTTTGATTTC 57.891 37.500 10.07 0.00 0.00 2.17
3364 3551 2.493278 GACAATGGCACCAGCAATAACT 59.507 45.455 0.00 0.00 44.61 2.24
3634 3830 1.301677 GCTGGCCGAACTTCTGAAGG 61.302 60.000 20.61 5.77 0.00 3.46
3650 3846 3.693085 AGCTACATCTTGAACAATGGCTG 59.307 43.478 0.00 0.00 0.00 4.85
3749 4108 7.990917 TCAACAAATGTGCAACTTAACTAGAA 58.009 30.769 0.00 0.00 38.04 2.10
3797 4156 4.526970 CAGAGTTGGCCATAACCTGTTAT 58.473 43.478 6.09 0.00 36.27 1.89
3854 4213 1.078848 GCCTCGCTCACAGACCATT 60.079 57.895 0.00 0.00 0.00 3.16
4038 4402 1.075861 CCCCATGCCACATCATATCCA 59.924 52.381 0.00 0.00 0.00 3.41
4262 4827 2.428544 AGCGGGCAAATGGTTGTATA 57.571 45.000 0.00 0.00 37.06 1.47
4333 4901 5.219633 GCTACAACGAAACCATGAACATTT 58.780 37.500 0.00 0.00 0.00 2.32
4334 4902 4.277174 TGCTACAACGAAACCATGAACATT 59.723 37.500 0.00 0.00 0.00 2.71
4395 4964 9.671279 ATCAACAATTAGATCATCTGTGTGTAA 57.329 29.630 0.00 0.00 0.00 2.41
4396 4965 9.317936 GATCAACAATTAGATCATCTGTGTGTA 57.682 33.333 0.00 0.00 40.23 2.90
4594 5163 4.138487 GGACATCCCGATATACCCAATC 57.862 50.000 0.00 0.00 0.00 2.67
4653 5222 7.201548 GCTCCAATGTTGCAAAATAGGTTAATG 60.202 37.037 1.59 0.00 0.00 1.90
4739 5310 6.432403 AATGTGCCCCAAGAGAAAAATAAA 57.568 33.333 0.00 0.00 0.00 1.40
4740 5311 6.229733 CAAATGTGCCCCAAGAGAAAAATAA 58.770 36.000 0.00 0.00 0.00 1.40
4822 5396 6.915349 TGTCTAAACAAATAACCCAAATCCG 58.085 36.000 0.00 0.00 30.70 4.18
4838 5412 6.841286 CGCAATCATCTCGTTTATGTCTAAAC 59.159 38.462 0.00 0.00 42.13 2.01
4852 5426 6.422100 TCAGCTATAGAAAACGCAATCATCTC 59.578 38.462 3.21 0.00 0.00 2.75
4882 5456 4.772434 ACACAAATCGAGAATTCAACGTG 58.228 39.130 19.04 14.40 0.00 4.49
4885 5459 8.443160 TGAGAATACACAAATCGAGAATTCAAC 58.557 33.333 8.44 0.46 0.00 3.18
5093 5667 5.550403 ACAATTACCCTAAACCAAGAGAGGA 59.450 40.000 0.00 0.00 0.00 3.71
5162 5736 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
5163 5737 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
5164 5738 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
5165 5739 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
5166 5740 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
5167 5741 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
5168 5742 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
5169 5743 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
5183 5757 0.388134 CATGGTCACAAAGCAGCAGC 60.388 55.000 0.00 0.00 39.11 5.25
5184 5758 1.199327 CTCATGGTCACAAAGCAGCAG 59.801 52.381 0.00 0.00 39.11 4.24
5185 5759 1.241165 CTCATGGTCACAAAGCAGCA 58.759 50.000 0.00 0.00 39.11 4.41
5186 5760 0.524862 CCTCATGGTCACAAAGCAGC 59.475 55.000 0.00 0.00 39.11 5.25
5187 5761 1.901591 ACCTCATGGTCACAAAGCAG 58.098 50.000 0.00 0.00 44.78 4.24
5199 5773 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
5200 5774 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
5201 5775 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
5202 5776 0.680061 AGACTTGAACCCGTGACCTC 59.320 55.000 0.00 0.00 0.00 3.85
5203 5777 1.129058 AAGACTTGAACCCGTGACCT 58.871 50.000 0.00 0.00 0.00 3.85
5204 5778 1.226746 CAAGACTTGAACCCGTGACC 58.773 55.000 9.76 0.00 0.00 4.02
5205 5779 1.202604 TCCAAGACTTGAACCCGTGAC 60.203 52.381 16.99 0.00 0.00 3.67
5206 5780 1.124780 TCCAAGACTTGAACCCGTGA 58.875 50.000 16.99 0.54 0.00 4.35
5207 5781 1.961793 TTCCAAGACTTGAACCCGTG 58.038 50.000 16.99 0.00 0.00 4.94
5208 5782 2.294979 GTTTCCAAGACTTGAACCCGT 58.705 47.619 16.99 0.00 0.00 5.28
5209 5783 2.290641 CTGTTTCCAAGACTTGAACCCG 59.709 50.000 16.99 4.73 0.00 5.28
5210 5784 2.034685 GCTGTTTCCAAGACTTGAACCC 59.965 50.000 16.99 4.73 0.00 4.11
5211 5785 2.034685 GGCTGTTTCCAAGACTTGAACC 59.965 50.000 16.99 2.96 0.00 3.62
5212 5786 2.034685 GGGCTGTTTCCAAGACTTGAAC 59.965 50.000 16.99 13.58 0.00 3.18
5213 5787 2.306847 GGGCTGTTTCCAAGACTTGAA 58.693 47.619 16.99 6.40 0.00 2.69
5214 5788 1.478654 GGGGCTGTTTCCAAGACTTGA 60.479 52.381 16.99 0.20 0.00 3.02
5215 5789 0.961753 GGGGCTGTTTCCAAGACTTG 59.038 55.000 8.31 8.31 0.00 3.16
5216 5790 0.853530 AGGGGCTGTTTCCAAGACTT 59.146 50.000 0.00 0.00 0.00 3.01
5217 5791 0.853530 AAGGGGCTGTTTCCAAGACT 59.146 50.000 0.00 0.00 0.00 3.24
5218 5792 0.961753 CAAGGGGCTGTTTCCAAGAC 59.038 55.000 0.00 0.00 0.00 3.01
5219 5793 0.827507 GCAAGGGGCTGTTTCCAAGA 60.828 55.000 0.00 0.00 40.25 3.02
5220 5794 1.114722 TGCAAGGGGCTGTTTCCAAG 61.115 55.000 0.00 0.00 45.15 3.61
5221 5795 1.075674 TGCAAGGGGCTGTTTCCAA 60.076 52.632 0.00 0.00 45.15 3.53
5222 5796 1.531365 CTGCAAGGGGCTGTTTCCA 60.531 57.895 0.00 0.00 45.15 3.53
5223 5797 0.827507 TTCTGCAAGGGGCTGTTTCC 60.828 55.000 0.00 0.00 45.15 3.13
5224 5798 1.039856 TTTCTGCAAGGGGCTGTTTC 58.960 50.000 0.00 0.00 45.15 2.78
5225 5799 1.494960 TTTTCTGCAAGGGGCTGTTT 58.505 45.000 0.00 0.00 45.15 2.83
5226 5800 1.345415 CATTTTCTGCAAGGGGCTGTT 59.655 47.619 0.00 0.00 45.15 3.16
5227 5801 0.971386 CATTTTCTGCAAGGGGCTGT 59.029 50.000 0.00 0.00 45.15 4.40
5228 5802 0.971386 ACATTTTCTGCAAGGGGCTG 59.029 50.000 0.00 0.00 45.15 4.85
5229 5803 2.450476 CTACATTTTCTGCAAGGGGCT 58.550 47.619 0.00 0.00 45.15 5.19
5230 5804 1.478105 CCTACATTTTCTGCAAGGGGC 59.522 52.381 0.00 0.00 45.13 5.80
5231 5805 2.102578 CCCTACATTTTCTGCAAGGGG 58.897 52.381 7.82 0.00 43.37 4.79
5232 5806 3.085952 TCCCTACATTTTCTGCAAGGG 57.914 47.619 9.24 9.24 46.29 3.95
5233 5807 4.082026 CCTTTCCCTACATTTTCTGCAAGG 60.082 45.833 0.00 0.00 33.16 3.61
5234 5808 4.619160 GCCTTTCCCTACATTTTCTGCAAG 60.619 45.833 0.00 0.00 0.00 4.01
5235 5809 3.258123 GCCTTTCCCTACATTTTCTGCAA 59.742 43.478 0.00 0.00 0.00 4.08
5236 5810 2.825532 GCCTTTCCCTACATTTTCTGCA 59.174 45.455 0.00 0.00 0.00 4.41
5237 5811 3.092301 AGCCTTTCCCTACATTTTCTGC 58.908 45.455 0.00 0.00 0.00 4.26
5238 5812 3.119352 GCAGCCTTTCCCTACATTTTCTG 60.119 47.826 0.00 0.00 0.00 3.02
5239 5813 3.092301 GCAGCCTTTCCCTACATTTTCT 58.908 45.455 0.00 0.00 0.00 2.52
5240 5814 2.159379 CGCAGCCTTTCCCTACATTTTC 60.159 50.000 0.00 0.00 0.00 2.29
5241 5815 1.818674 CGCAGCCTTTCCCTACATTTT 59.181 47.619 0.00 0.00 0.00 1.82
5242 5816 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
5243 5817 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
5244 5818 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
5245 5819 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
5246 5820 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
5247 5821 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
5248 5822 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
5249 5823 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
5250 5824 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
5251 5825 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
5252 5826 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
5253 5827 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
5254 5828 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
5255 5829 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
5256 5830 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
5257 5831 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
5258 5832 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
5259 5833 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
5260 5834 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
5270 5844 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
5271 5845 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
5272 5846 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
5273 5847 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
5274 5848 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
5275 5849 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
5276 5850 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
5277 5851 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
5278 5852 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
5279 5853 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
5280 5854 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
5281 5855 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
5282 5856 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
5283 5857 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
5284 5858 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
5285 5859 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
5286 5860 2.204151 ACAGGGTCCAGGGAAGGG 60.204 66.667 0.00 0.00 0.00 3.95
5287 5861 3.081554 CACAGGGTCCAGGGAAGG 58.918 66.667 0.00 0.00 0.00 3.46
5288 5862 2.067932 TTGCACAGGGTCCAGGGAAG 62.068 60.000 0.00 0.00 0.00 3.46
5289 5863 2.067932 CTTGCACAGGGTCCAGGGAA 62.068 60.000 0.00 0.00 0.00 3.97
5290 5864 2.449518 TTGCACAGGGTCCAGGGA 60.450 61.111 0.00 0.00 0.00 4.20
5291 5865 2.034687 CTTGCACAGGGTCCAGGG 59.965 66.667 0.00 0.00 0.00 4.45
5292 5866 2.674380 GCTTGCACAGGGTCCAGG 60.674 66.667 0.00 0.00 0.00 4.45
5293 5867 1.970114 CTGCTTGCACAGGGTCCAG 60.970 63.158 0.00 0.00 33.85 3.86
5294 5868 2.113774 CTGCTTGCACAGGGTCCA 59.886 61.111 0.00 0.00 33.85 4.02
5312 5886 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
5313 5887 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
5314 5888 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
5315 5889 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
5316 5890 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
5389 5964 7.669304 TCCCTTGATGTTGATTTTATTCACAGA 59.331 33.333 0.00 0.00 0.00 3.41
5390 5965 7.829725 TCCCTTGATGTTGATTTTATTCACAG 58.170 34.615 0.00 0.00 0.00 3.66
5502 6176 7.377398 AGCAAAATTATGTTATGAACACAGCA 58.623 30.769 0.00 0.00 45.50 4.41
5639 6324 9.720769 TTTAAAACTTTCACCACCAATTTGTTA 57.279 25.926 0.00 0.00 0.00 2.41
5688 6373 4.067896 CAGTCCATATAAGCATGGTGTCC 58.932 47.826 0.00 0.00 44.98 4.02
5697 6382 2.621070 TCCCTCCCAGTCCATATAAGC 58.379 52.381 0.00 0.00 0.00 3.09
5723 6409 3.567576 TTGGAACATTGCCACGTATTG 57.432 42.857 0.00 0.00 39.30 1.90
5724 6410 3.572255 ACTTTGGAACATTGCCACGTATT 59.428 39.130 0.00 0.00 39.30 1.89
5842 6535 5.705441 TGGCTACACAGAAGAACCAAAATAG 59.295 40.000 0.00 0.00 0.00 1.73
6283 6997 3.482156 AGTGAGCATATCATCACCCAC 57.518 47.619 11.50 0.00 45.61 4.61
6286 7000 6.471146 AGGAATAAGTGAGCATATCATCACC 58.529 40.000 11.50 0.00 45.61 4.02
6308 7022 3.988379 AACAATGTGCACAACAGTAGG 57.012 42.857 25.72 10.44 43.64 3.18
6327 7045 4.514441 CCAAATTGCACAATGGCTACAAAA 59.486 37.500 0.00 0.00 34.04 2.44
6341 7059 1.614903 CAACAGCTCCTCCAAATTGCA 59.385 47.619 0.00 0.00 0.00 4.08
6389 7107 3.567478 ATACCCAAGCAAGGATGTCTC 57.433 47.619 0.00 0.00 0.00 3.36
6430 7152 2.790433 AGGAAAATGGTGAGCGCTTAA 58.210 42.857 13.26 0.00 0.00 1.85
6448 7170 3.045688 GCTTCGCACAAAGAGAAAAAGG 58.954 45.455 0.00 0.00 35.57 3.11
6642 7364 1.545582 GCAGGCAATCCAACAAAGCTA 59.454 47.619 0.00 0.00 33.74 3.32
6718 7445 2.165437 AGTTGATTCTCGAGACAGAGCC 59.835 50.000 16.36 1.86 38.12 4.70
6719 7446 3.434637 GAGTTGATTCTCGAGACAGAGC 58.565 50.000 16.36 4.03 38.12 4.09
6739 7466 6.036735 ACAAATCAAAAGTCGACTTCTTTCGA 59.963 34.615 29.82 20.36 45.62 3.71
6856 7583 8.553153 TGTATCAGTTTATCACCAGGGATAAAA 58.447 33.333 14.96 2.93 45.95 1.52
6877 7604 3.747099 AGCATTGTTCGCAACTGTATC 57.253 42.857 0.00 0.00 40.27 2.24
6921 7649 9.750783 AGCTCTAGGCATTATGATTTATTGATT 57.249 29.630 0.00 0.00 44.79 2.57
6922 7650 9.750783 AAGCTCTAGGCATTATGATTTATTGAT 57.249 29.630 0.00 0.00 44.79 2.57
6923 7651 9.578576 AAAGCTCTAGGCATTATGATTTATTGA 57.421 29.630 0.00 0.00 44.79 2.57
6926 7654 9.804977 AGAAAAGCTCTAGGCATTATGATTTAT 57.195 29.630 0.00 0.00 44.79 1.40
6927 7655 9.632638 AAGAAAAGCTCTAGGCATTATGATTTA 57.367 29.630 0.00 0.00 44.79 1.40
7049 8011 2.887152 GGATGCTTCACTTCTGGTTTGT 59.113 45.455 1.64 0.00 0.00 2.83
7050 8012 2.886523 TGGATGCTTCACTTCTGGTTTG 59.113 45.455 1.64 0.00 0.00 2.93
7056 8021 4.184079 GCAAATTGGATGCTTCACTTCT 57.816 40.909 1.64 0.00 40.64 2.85
7068 8033 3.831323 TCAGAACTGGAAGCAAATTGGA 58.169 40.909 1.93 0.00 37.60 3.53
7073 8038 4.949856 ACTTTCTTCAGAACTGGAAGCAAA 59.050 37.500 1.93 0.00 41.16 3.68
7076 8041 5.506686 AAACTTTCTTCAGAACTGGAAGC 57.493 39.130 1.93 0.00 41.16 3.86
7079 8044 5.064707 CGTCAAAACTTTCTTCAGAACTGGA 59.935 40.000 1.93 0.00 33.13 3.86
7103 8068 3.140325 TCCCATTCAAATATCCGGAGC 57.860 47.619 11.34 0.00 0.00 4.70
7104 8069 4.024048 CGTTTCCCATTCAAATATCCGGAG 60.024 45.833 11.34 0.00 0.00 4.63
7108 8073 5.810074 CCAAACGTTTCCCATTCAAATATCC 59.190 40.000 11.37 0.00 0.00 2.59
7116 8081 2.606108 GATGCCAAACGTTTCCCATTC 58.394 47.619 11.37 7.17 0.00 2.67
7695 8907 3.853475 ACGGTTGCAACACTAGTATACC 58.147 45.455 29.55 9.28 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.