Multiple sequence alignment - TraesCS2B01G114100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G114100 chr2B 100.000 2818 0 0 1 2818 77332796 77335613 0.000000e+00 5204
1 TraesCS2B01G114100 chr6D 94.893 2428 80 23 1 2396 15118206 15120621 0.000000e+00 3757
2 TraesCS2B01G114100 chr6D 95.845 361 12 2 2461 2818 344990655 344991015 5.230000e-162 580
3 TraesCS2B01G114100 chr6D 88.889 279 28 3 2059 2334 4668659 4668381 9.670000e-90 340
4 TraesCS2B01G114100 chr6D 83.898 236 31 5 2150 2380 9868808 9869041 4.730000e-53 219
5 TraesCS2B01G114100 chr6A 94.937 2390 105 7 1 2388 613365491 613367866 0.000000e+00 3729
6 TraesCS2B01G114100 chr6A 92.752 1904 114 12 3 1899 395871762 395869876 0.000000e+00 2730
7 TraesCS2B01G114100 chr6A 96.245 799 25 2 1 796 162276183 162275387 0.000000e+00 1304
8 TraesCS2B01G114100 chr4D 94.724 2388 86 16 1 2386 386931297 386933646 0.000000e+00 3675
9 TraesCS2B01G114100 chr4D 91.304 184 16 0 2205 2388 105932744 105932561 4.660000e-63 252
10 TraesCS2B01G114100 chr4D 96.842 95 3 0 2382 2476 94217792 94217886 2.910000e-35 159
11 TraesCS2B01G114100 chr4D 96.842 95 3 0 2382 2476 175273478 175273572 2.910000e-35 159
12 TraesCS2B01G114100 chr6B 92.272 2394 140 23 3 2387 171789822 171787465 0.000000e+00 3354
13 TraesCS2B01G114100 chr6B 97.688 346 6 2 2472 2816 537816157 537816501 6.720000e-166 593
14 TraesCS2B01G114100 chr6B 97.953 342 6 1 2478 2818 504192560 504192901 2.420000e-165 592
15 TraesCS2B01G114100 chr6B 96.023 352 12 2 2469 2818 609639078 609638727 3.150000e-159 571
16 TraesCS2B01G114100 chr6B 92.453 106 6 2 2374 2477 631683873 631683978 1.750000e-32 150
17 TraesCS2B01G114100 chr1A 96.805 1659 46 2 1 1658 565154019 565155671 0.000000e+00 2763
18 TraesCS2B01G114100 chr1A 96.650 806 27 0 1587 2392 8732460 8733265 0.000000e+00 1339
19 TraesCS2B01G114100 chr1A 95.278 360 14 3 2461 2818 249244431 249244789 4.070000e-158 568
20 TraesCS2B01G114100 chr1A 89.749 439 39 5 2383 2817 141073608 141074044 8.820000e-155 556
21 TraesCS2B01G114100 chr7B 93.779 1752 92 8 633 2383 228682905 228681170 0.000000e+00 2615
22 TraesCS2B01G114100 chr7B 92.877 1404 92 5 494 1897 499717348 499715953 0.000000e+00 2032
23 TraesCS2B01G114100 chr7B 96.328 354 10 2 2466 2818 409788431 409788080 1.880000e-161 579
24 TraesCS2B01G114100 chr7B 95.518 357 15 1 2463 2818 19068660 19069016 1.130000e-158 569
25 TraesCS2B01G114100 chr3A 95.708 1561 65 2 824 2384 55445530 55447088 0.000000e+00 2510
26 TraesCS2B01G114100 chr3B 93.521 1281 66 9 1112 2388 188482130 188483397 0.000000e+00 1890
27 TraesCS2B01G114100 chr3D 95.990 798 24 3 1 796 61930547 61931338 0.000000e+00 1290
28 TraesCS2B01G114100 chr3D 96.045 354 13 1 2466 2818 278106070 278105717 2.430000e-160 575
29 TraesCS2B01G114100 chr5A 93.867 799 34 7 3 798 225611310 225612096 0.000000e+00 1190
30 TraesCS2B01G114100 chr2D 94.521 438 22 2 2382 2818 527988524 527988960 0.000000e+00 675
31 TraesCS2B01G114100 chr1B 97.399 346 8 1 2474 2818 566470859 566471204 3.130000e-164 588
32 TraesCS2B01G114100 chr7D 95.109 368 16 2 2452 2818 485772182 485771816 1.880000e-161 579
33 TraesCS2B01G114100 chr7D 96.842 95 3 0 2382 2476 346975241 346975147 2.910000e-35 159
34 TraesCS2B01G114100 chr1D 91.262 206 16 1 2183 2388 410219456 410219253 2.140000e-71 279
35 TraesCS2B01G114100 chr5B 94.792 96 5 0 2382 2477 91591816 91591721 1.750000e-32 150
36 TraesCS2B01G114100 chr5B 92.453 106 6 2 2374 2477 662101652 662101757 1.750000e-32 150
37 TraesCS2B01G114100 chr2A 91.818 110 6 3 2371 2477 325724910 325724801 1.750000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G114100 chr2B 77332796 77335613 2817 False 5204 5204 100.000 1 2818 1 chr2B.!!$F1 2817
1 TraesCS2B01G114100 chr6D 15118206 15120621 2415 False 3757 3757 94.893 1 2396 1 chr6D.!!$F2 2395
2 TraesCS2B01G114100 chr6A 613365491 613367866 2375 False 3729 3729 94.937 1 2388 1 chr6A.!!$F1 2387
3 TraesCS2B01G114100 chr6A 395869876 395871762 1886 True 2730 2730 92.752 3 1899 1 chr6A.!!$R2 1896
4 TraesCS2B01G114100 chr6A 162275387 162276183 796 True 1304 1304 96.245 1 796 1 chr6A.!!$R1 795
5 TraesCS2B01G114100 chr4D 386931297 386933646 2349 False 3675 3675 94.724 1 2386 1 chr4D.!!$F3 2385
6 TraesCS2B01G114100 chr6B 171787465 171789822 2357 True 3354 3354 92.272 3 2387 1 chr6B.!!$R1 2384
7 TraesCS2B01G114100 chr1A 565154019 565155671 1652 False 2763 2763 96.805 1 1658 1 chr1A.!!$F4 1657
8 TraesCS2B01G114100 chr1A 8732460 8733265 805 False 1339 1339 96.650 1587 2392 1 chr1A.!!$F1 805
9 TraesCS2B01G114100 chr7B 228681170 228682905 1735 True 2615 2615 93.779 633 2383 1 chr7B.!!$R1 1750
10 TraesCS2B01G114100 chr7B 499715953 499717348 1395 True 2032 2032 92.877 494 1897 1 chr7B.!!$R3 1403
11 TraesCS2B01G114100 chr3A 55445530 55447088 1558 False 2510 2510 95.708 824 2384 1 chr3A.!!$F1 1560
12 TraesCS2B01G114100 chr3B 188482130 188483397 1267 False 1890 1890 93.521 1112 2388 1 chr3B.!!$F1 1276
13 TraesCS2B01G114100 chr3D 61930547 61931338 791 False 1290 1290 95.990 1 796 1 chr3D.!!$F1 795
14 TraesCS2B01G114100 chr5A 225611310 225612096 786 False 1190 1190 93.867 3 798 1 chr5A.!!$F1 795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
987 1055 1.840635 AGGAGGAGGAATTACTGCACC 59.159 52.381 16.48 16.48 39.27 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2737 2812 0.107361 GATCCAAAACCCGACCCGAT 60.107 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
579 584 4.974645 AGTCACTACTGAATGGTCCAAA 57.025 40.909 0.00 0.00 33.57 3.28
591 596 4.806640 ATGGTCCAAATTTAGGCAACAG 57.193 40.909 0.00 0.00 41.41 3.16
698 706 4.196971 GGCGGTGGTCTTCTTTTGTATAT 58.803 43.478 0.00 0.00 0.00 0.86
801 865 8.848182 GGTCTTCTTTTGTATAGCTAGCTACTA 58.152 37.037 26.41 16.03 0.00 1.82
987 1055 1.840635 AGGAGGAGGAATTACTGCACC 59.159 52.381 16.48 16.48 39.27 5.01
1007 1075 2.643304 CCTGGGATGATGAGATGGATGT 59.357 50.000 0.00 0.00 0.00 3.06
1600 1672 4.386711 TGCATGCTTGGAGATATGAAGAG 58.613 43.478 20.33 0.00 0.00 2.85
1601 1673 4.102054 TGCATGCTTGGAGATATGAAGAGA 59.898 41.667 20.33 0.00 0.00 3.10
1854 1927 2.159448 TGTGCTGTTGAACTTTGAACCG 60.159 45.455 0.00 0.00 0.00 4.44
1887 1960 6.801539 TGTCATGTTGAACTTGGAACTATC 57.198 37.500 10.73 0.00 0.00 2.08
1901 1974 7.563924 ACTTGGAACTATCTATGTACTGCCTTA 59.436 37.037 0.00 0.00 0.00 2.69
2249 2324 9.270576 CAAACAAGATTCTGTATTGAAATCTCG 57.729 33.333 0.00 0.00 33.32 4.04
2250 2325 8.777865 AACAAGATTCTGTATTGAAATCTCGA 57.222 30.769 0.00 0.00 33.32 4.04
2303 2378 6.567687 ACCAAACATGTGAATTCGTATTCA 57.432 33.333 12.80 12.80 45.99 2.57
2388 2463 4.192317 GAGACATCCAAACGAAGCCTTAT 58.808 43.478 0.00 0.00 0.00 1.73
2392 2467 4.275936 ACATCCAAACGAAGCCTTATATGC 59.724 41.667 0.00 0.00 0.00 3.14
2393 2468 3.879998 TCCAAACGAAGCCTTATATGCA 58.120 40.909 0.00 0.00 0.00 3.96
2395 2470 4.887071 TCCAAACGAAGCCTTATATGCATT 59.113 37.500 3.54 0.00 0.00 3.56
2396 2471 4.977963 CCAAACGAAGCCTTATATGCATTG 59.022 41.667 3.54 0.00 0.00 2.82
2397 2472 4.836125 AACGAAGCCTTATATGCATTGG 57.164 40.909 3.54 3.93 0.00 3.16
2398 2473 2.554032 ACGAAGCCTTATATGCATTGGC 59.446 45.455 18.69 18.69 43.52 4.52
2402 2477 3.207474 GCCTTATATGCATTGGCTTCG 57.793 47.619 18.91 0.34 41.91 3.79
2403 2478 2.813754 GCCTTATATGCATTGGCTTCGA 59.186 45.455 18.91 0.00 41.91 3.71
2404 2479 3.253188 GCCTTATATGCATTGGCTTCGAA 59.747 43.478 18.91 0.00 41.91 3.71
2405 2480 4.082571 GCCTTATATGCATTGGCTTCGAAT 60.083 41.667 18.91 2.69 41.91 3.34
2406 2481 5.634896 CCTTATATGCATTGGCTTCGAATC 58.365 41.667 3.54 0.00 41.91 2.52
2407 2482 5.181811 CCTTATATGCATTGGCTTCGAATCA 59.818 40.000 3.54 0.00 41.91 2.57
2408 2483 6.127814 CCTTATATGCATTGGCTTCGAATCAT 60.128 38.462 3.54 0.00 41.91 2.45
2409 2484 2.855660 TGCATTGGCTTCGAATCATG 57.144 45.000 0.00 0.00 41.91 3.07
2410 2485 2.093890 TGCATTGGCTTCGAATCATGT 58.906 42.857 0.00 0.00 41.91 3.21
2411 2486 2.097954 TGCATTGGCTTCGAATCATGTC 59.902 45.455 0.00 0.00 41.91 3.06
2412 2487 2.357009 GCATTGGCTTCGAATCATGTCT 59.643 45.455 0.00 0.00 36.96 3.41
2413 2488 3.181493 GCATTGGCTTCGAATCATGTCTT 60.181 43.478 0.00 0.00 36.96 3.01
2414 2489 4.676196 GCATTGGCTTCGAATCATGTCTTT 60.676 41.667 0.00 0.00 36.96 2.52
2415 2490 4.424061 TTGGCTTCGAATCATGTCTTTG 57.576 40.909 0.00 0.00 0.00 2.77
2416 2491 2.749076 TGGCTTCGAATCATGTCTTTGG 59.251 45.455 0.00 0.00 0.00 3.28
2417 2492 2.749621 GGCTTCGAATCATGTCTTTGGT 59.250 45.455 0.00 0.00 0.00 3.67
2418 2493 3.181506 GGCTTCGAATCATGTCTTTGGTC 60.182 47.826 0.00 0.00 0.00 4.02
2419 2494 3.436704 GCTTCGAATCATGTCTTTGGTCA 59.563 43.478 0.00 0.00 0.00 4.02
2420 2495 4.083324 GCTTCGAATCATGTCTTTGGTCAA 60.083 41.667 0.00 0.00 0.00 3.18
2421 2496 5.392380 GCTTCGAATCATGTCTTTGGTCAAT 60.392 40.000 0.00 0.00 0.00 2.57
2422 2497 6.183360 GCTTCGAATCATGTCTTTGGTCAATA 60.183 38.462 0.00 0.00 0.00 1.90
2423 2498 6.908870 TCGAATCATGTCTTTGGTCAATAG 57.091 37.500 0.00 0.00 0.00 1.73
2424 2499 6.406370 TCGAATCATGTCTTTGGTCAATAGT 58.594 36.000 0.00 0.00 0.00 2.12
2425 2500 6.878923 TCGAATCATGTCTTTGGTCAATAGTT 59.121 34.615 0.00 0.00 0.00 2.24
2426 2501 6.963242 CGAATCATGTCTTTGGTCAATAGTTG 59.037 38.462 0.00 0.00 0.00 3.16
2427 2502 6.764308 ATCATGTCTTTGGTCAATAGTTGG 57.236 37.500 0.00 0.00 0.00 3.77
2428 2503 5.009631 TCATGTCTTTGGTCAATAGTTGGG 58.990 41.667 0.00 0.00 0.00 4.12
2429 2504 4.447138 TGTCTTTGGTCAATAGTTGGGT 57.553 40.909 0.00 0.00 0.00 4.51
2430 2505 4.798882 TGTCTTTGGTCAATAGTTGGGTT 58.201 39.130 0.00 0.00 0.00 4.11
2431 2506 4.582656 TGTCTTTGGTCAATAGTTGGGTTG 59.417 41.667 0.00 0.00 0.00 3.77
2432 2507 3.572255 TCTTTGGTCAATAGTTGGGTTGC 59.428 43.478 0.00 0.00 0.00 4.17
2433 2508 1.529226 TGGTCAATAGTTGGGTTGCG 58.471 50.000 0.00 0.00 0.00 4.85
2434 2509 0.170339 GGTCAATAGTTGGGTTGCGC 59.830 55.000 0.00 0.00 0.00 6.09
2435 2510 0.179200 GTCAATAGTTGGGTTGCGCG 60.179 55.000 0.00 0.00 0.00 6.86
2436 2511 1.136565 CAATAGTTGGGTTGCGCGG 59.863 57.895 8.83 0.00 0.00 6.46
2437 2512 2.696759 AATAGTTGGGTTGCGCGGC 61.697 57.895 8.83 0.00 0.00 6.53
2438 2513 3.622060 ATAGTTGGGTTGCGCGGCT 62.622 57.895 8.83 0.00 0.00 5.52
2451 2526 2.432456 CGGCTCGTGTGCTTGCTA 60.432 61.111 0.00 0.00 0.00 3.49
2452 2527 2.730672 CGGCTCGTGTGCTTGCTAC 61.731 63.158 0.00 0.00 0.00 3.58
2453 2528 2.391389 GGCTCGTGTGCTTGCTACC 61.391 63.158 0.00 0.00 0.00 3.18
2454 2529 1.374758 GCTCGTGTGCTTGCTACCT 60.375 57.895 0.00 0.00 0.00 3.08
2455 2530 0.951040 GCTCGTGTGCTTGCTACCTT 60.951 55.000 0.00 0.00 0.00 3.50
2456 2531 1.671850 GCTCGTGTGCTTGCTACCTTA 60.672 52.381 0.00 0.00 0.00 2.69
2457 2532 1.993370 CTCGTGTGCTTGCTACCTTAC 59.007 52.381 0.00 0.00 0.00 2.34
2458 2533 0.713883 CGTGTGCTTGCTACCTTACG 59.286 55.000 0.00 0.00 0.00 3.18
2459 2534 1.792006 GTGTGCTTGCTACCTTACGT 58.208 50.000 0.00 0.00 0.00 3.57
2460 2535 2.140717 GTGTGCTTGCTACCTTACGTT 58.859 47.619 0.00 0.00 0.00 3.99
2461 2536 2.157085 GTGTGCTTGCTACCTTACGTTC 59.843 50.000 0.00 0.00 0.00 3.95
2462 2537 1.730612 GTGCTTGCTACCTTACGTTCC 59.269 52.381 0.00 0.00 0.00 3.62
2463 2538 0.997196 GCTTGCTACCTTACGTTCCG 59.003 55.000 0.00 0.00 0.00 4.30
2464 2539 0.997196 CTTGCTACCTTACGTTCCGC 59.003 55.000 0.00 0.00 0.00 5.54
2465 2540 0.604578 TTGCTACCTTACGTTCCGCT 59.395 50.000 0.00 0.00 0.00 5.52
2466 2541 1.462616 TGCTACCTTACGTTCCGCTA 58.537 50.000 0.00 0.00 0.00 4.26
2467 2542 2.026641 TGCTACCTTACGTTCCGCTAT 58.973 47.619 0.00 0.00 0.00 2.97
2468 2543 3.213506 TGCTACCTTACGTTCCGCTATA 58.786 45.455 0.00 0.00 0.00 1.31
2469 2544 3.822735 TGCTACCTTACGTTCCGCTATAT 59.177 43.478 0.00 0.00 0.00 0.86
2470 2545 4.083110 TGCTACCTTACGTTCCGCTATATC 60.083 45.833 0.00 0.00 0.00 1.63
2471 2546 3.549299 ACCTTACGTTCCGCTATATCG 57.451 47.619 0.00 0.00 0.00 2.92
2479 2554 3.330766 CCGCTATATCGGCTAGCAC 57.669 57.895 18.24 5.06 43.18 4.40
2480 2555 0.811915 CCGCTATATCGGCTAGCACT 59.188 55.000 18.24 2.47 43.18 4.40
2481 2556 2.014857 CCGCTATATCGGCTAGCACTA 58.985 52.381 18.24 4.84 43.18 2.74
2482 2557 2.223294 CCGCTATATCGGCTAGCACTAC 60.223 54.545 18.24 0.00 43.18 2.73
2483 2558 2.418976 CGCTATATCGGCTAGCACTACA 59.581 50.000 18.24 0.00 41.35 2.74
2484 2559 3.119955 CGCTATATCGGCTAGCACTACAA 60.120 47.826 18.24 0.00 41.35 2.41
2485 2560 4.615223 CGCTATATCGGCTAGCACTACAAA 60.615 45.833 18.24 0.00 41.35 2.83
2486 2561 5.227908 GCTATATCGGCTAGCACTACAAAA 58.772 41.667 18.24 0.00 41.03 2.44
2487 2562 5.694910 GCTATATCGGCTAGCACTACAAAAA 59.305 40.000 18.24 0.00 41.03 1.94
2509 2584 7.915293 AAAAATACACTTCCGTGATGATACA 57.085 32.000 0.00 0.00 43.97 2.29
2510 2585 8.506168 AAAAATACACTTCCGTGATGATACAT 57.494 30.769 0.00 0.00 43.97 2.29
2511 2586 7.482654 AAATACACTTCCGTGATGATACATG 57.517 36.000 0.00 0.00 43.97 3.21
2512 2587 4.471904 ACACTTCCGTGATGATACATGT 57.528 40.909 2.69 2.69 43.97 3.21
2513 2588 4.832248 ACACTTCCGTGATGATACATGTT 58.168 39.130 2.30 0.00 43.97 2.71
2514 2589 5.245531 ACACTTCCGTGATGATACATGTTT 58.754 37.500 2.30 0.00 43.97 2.83
2515 2590 5.122239 ACACTTCCGTGATGATACATGTTTG 59.878 40.000 2.30 0.00 43.97 2.93
2516 2591 5.122239 CACTTCCGTGATGATACATGTTTGT 59.878 40.000 2.30 0.00 43.97 2.83
2517 2592 5.351465 ACTTCCGTGATGATACATGTTTGTC 59.649 40.000 2.30 0.95 37.28 3.18
2518 2593 4.826556 TCCGTGATGATACATGTTTGTCA 58.173 39.130 2.30 7.19 37.28 3.58
2519 2594 5.427378 TCCGTGATGATACATGTTTGTCAT 58.573 37.500 16.31 16.31 37.28 3.06
2520 2595 6.578023 TCCGTGATGATACATGTTTGTCATA 58.422 36.000 2.30 0.04 37.28 2.15
2521 2596 6.701400 TCCGTGATGATACATGTTTGTCATAG 59.299 38.462 2.30 7.24 37.28 2.23
2522 2597 6.479990 CCGTGATGATACATGTTTGTCATAGT 59.520 38.462 2.30 0.00 37.28 2.12
2523 2598 7.651704 CCGTGATGATACATGTTTGTCATAGTA 59.348 37.037 2.30 0.72 37.28 1.82
2524 2599 8.694394 CGTGATGATACATGTTTGTCATAGTAG 58.306 37.037 2.30 2.15 37.28 2.57
2525 2600 8.982685 GTGATGATACATGTTTGTCATAGTAGG 58.017 37.037 2.30 0.00 37.28 3.18
2526 2601 8.704668 TGATGATACATGTTTGTCATAGTAGGT 58.295 33.333 2.30 0.00 37.28 3.08
2527 2602 9.197694 GATGATACATGTTTGTCATAGTAGGTC 57.802 37.037 2.30 0.00 37.28 3.85
2528 2603 7.200455 TGATACATGTTTGTCATAGTAGGTCG 58.800 38.462 2.30 0.00 37.28 4.79
2529 2604 4.181578 ACATGTTTGTCATAGTAGGTCGC 58.818 43.478 0.00 0.00 34.67 5.19
2530 2605 2.871133 TGTTTGTCATAGTAGGTCGCG 58.129 47.619 0.00 0.00 0.00 5.87
2531 2606 2.229543 TGTTTGTCATAGTAGGTCGCGT 59.770 45.455 5.77 0.00 0.00 6.01
2532 2607 3.248266 GTTTGTCATAGTAGGTCGCGTT 58.752 45.455 5.77 0.00 0.00 4.84
2533 2608 3.581024 TTGTCATAGTAGGTCGCGTTT 57.419 42.857 5.77 0.00 0.00 3.60
2534 2609 3.581024 TGTCATAGTAGGTCGCGTTTT 57.419 42.857 5.77 0.00 0.00 2.43
2535 2610 3.916761 TGTCATAGTAGGTCGCGTTTTT 58.083 40.909 5.77 0.00 0.00 1.94
2554 2629 5.718724 TTTTTGTCATGCATGTACATCCA 57.281 34.783 25.43 2.99 0.00 3.41
2555 2630 5.918426 TTTTGTCATGCATGTACATCCAT 57.082 34.783 25.43 6.44 0.00 3.41
2556 2631 4.904253 TTGTCATGCATGTACATCCATG 57.096 40.909 27.23 27.23 44.07 3.66
2557 2632 4.153673 TGTCATGCATGTACATCCATGA 57.846 40.909 30.25 30.25 43.99 3.07
2559 2634 3.132925 TCATGCATGTACATCCATGACG 58.867 45.455 30.25 12.42 43.99 4.35
2560 2635 2.977772 TGCATGTACATCCATGACGA 57.022 45.000 5.07 0.00 43.99 4.20
2561 2636 3.473923 TGCATGTACATCCATGACGAT 57.526 42.857 5.07 0.00 43.99 3.73
2562 2637 3.807553 TGCATGTACATCCATGACGATT 58.192 40.909 5.07 0.00 43.99 3.34
2563 2638 4.198530 TGCATGTACATCCATGACGATTT 58.801 39.130 5.07 0.00 43.99 2.17
2564 2639 4.639755 TGCATGTACATCCATGACGATTTT 59.360 37.500 5.07 0.00 43.99 1.82
2565 2640 5.819901 TGCATGTACATCCATGACGATTTTA 59.180 36.000 5.07 0.00 43.99 1.52
2566 2641 6.486320 TGCATGTACATCCATGACGATTTTAT 59.514 34.615 5.07 0.00 43.99 1.40
2567 2642 6.798476 GCATGTACATCCATGACGATTTTATG 59.202 38.462 5.07 0.00 43.99 1.90
2568 2643 7.307930 GCATGTACATCCATGACGATTTTATGA 60.308 37.037 5.07 0.00 43.99 2.15
2569 2644 7.477144 TGTACATCCATGACGATTTTATGAC 57.523 36.000 0.00 0.00 0.00 3.06
2570 2645 7.044798 TGTACATCCATGACGATTTTATGACA 58.955 34.615 0.00 0.00 0.00 3.58
2571 2646 6.609237 ACATCCATGACGATTTTATGACAG 57.391 37.500 0.00 0.00 0.00 3.51
2572 2647 6.348498 ACATCCATGACGATTTTATGACAGA 58.652 36.000 0.00 0.00 0.00 3.41
2573 2648 6.823182 ACATCCATGACGATTTTATGACAGAA 59.177 34.615 0.00 0.00 0.00 3.02
2574 2649 7.500227 ACATCCATGACGATTTTATGACAGAAT 59.500 33.333 0.00 0.00 0.00 2.40
2575 2650 7.482654 TCCATGACGATTTTATGACAGAATC 57.517 36.000 0.00 0.00 0.00 2.52
2576 2651 7.047271 TCCATGACGATTTTATGACAGAATCA 58.953 34.615 0.00 0.00 43.13 2.57
2577 2652 7.552330 TCCATGACGATTTTATGACAGAATCAA 59.448 33.333 0.00 0.00 41.93 2.57
2578 2653 7.854422 CCATGACGATTTTATGACAGAATCAAG 59.146 37.037 0.00 0.00 41.93 3.02
2579 2654 8.606602 CATGACGATTTTATGACAGAATCAAGA 58.393 33.333 0.00 0.00 41.93 3.02
2580 2655 8.722480 TGACGATTTTATGACAGAATCAAGAT 57.278 30.769 0.00 0.00 41.93 2.40
2581 2656 9.816354 TGACGATTTTATGACAGAATCAAGATA 57.184 29.630 0.00 0.00 41.93 1.98
2583 2658 9.823647 ACGATTTTATGACAGAATCAAGATAGT 57.176 29.630 0.00 0.00 41.93 2.12
2588 2663 8.948631 TTATGACAGAATCAAGATAGTCAACC 57.051 34.615 13.27 0.00 41.93 3.77
2589 2664 6.611613 TGACAGAATCAAGATAGTCAACCT 57.388 37.500 9.18 0.00 33.02 3.50
2590 2665 7.718334 TGACAGAATCAAGATAGTCAACCTA 57.282 36.000 9.18 0.00 33.02 3.08
2591 2666 8.311395 TGACAGAATCAAGATAGTCAACCTAT 57.689 34.615 9.18 0.00 35.04 2.57
2592 2667 8.200120 TGACAGAATCAAGATAGTCAACCTATG 58.800 37.037 9.18 0.00 33.51 2.23
2593 2668 6.989169 ACAGAATCAAGATAGTCAACCTATGC 59.011 38.462 0.00 0.00 36.47 3.14
2594 2669 7.147585 ACAGAATCAAGATAGTCAACCTATGCT 60.148 37.037 0.00 0.00 36.47 3.79
2595 2670 7.171167 CAGAATCAAGATAGTCAACCTATGCTG 59.829 40.741 0.00 0.00 36.47 4.41
2596 2671 5.939764 TCAAGATAGTCAACCTATGCTGT 57.060 39.130 0.00 0.00 36.47 4.40
2597 2672 5.907207 TCAAGATAGTCAACCTATGCTGTC 58.093 41.667 0.00 0.00 36.47 3.51
2598 2673 4.576216 AGATAGTCAACCTATGCTGTCG 57.424 45.455 0.00 0.00 36.47 4.35
2599 2674 3.954904 AGATAGTCAACCTATGCTGTCGT 59.045 43.478 0.00 0.00 36.47 4.34
2600 2675 5.131067 AGATAGTCAACCTATGCTGTCGTA 58.869 41.667 0.00 0.00 36.47 3.43
2601 2676 3.784701 AGTCAACCTATGCTGTCGTAG 57.215 47.619 0.00 0.00 0.00 3.51
2602 2677 3.353557 AGTCAACCTATGCTGTCGTAGA 58.646 45.455 0.00 0.00 34.45 2.59
2603 2678 3.762288 AGTCAACCTATGCTGTCGTAGAA 59.238 43.478 0.00 0.00 39.69 2.10
2604 2679 4.106197 GTCAACCTATGCTGTCGTAGAAG 58.894 47.826 0.00 0.00 39.69 2.85
2605 2680 3.762288 TCAACCTATGCTGTCGTAGAAGT 59.238 43.478 0.00 0.00 39.69 3.01
2606 2681 3.784701 ACCTATGCTGTCGTAGAAGTG 57.215 47.619 0.00 0.00 39.69 3.16
2607 2682 3.090037 ACCTATGCTGTCGTAGAAGTGT 58.910 45.455 0.00 0.00 39.69 3.55
2608 2683 3.510360 ACCTATGCTGTCGTAGAAGTGTT 59.490 43.478 0.00 0.00 39.69 3.32
2609 2684 4.106197 CCTATGCTGTCGTAGAAGTGTTC 58.894 47.826 0.00 0.00 39.69 3.18
2610 2685 2.433868 TGCTGTCGTAGAAGTGTTCC 57.566 50.000 0.00 0.00 39.69 3.62
2611 2686 1.684450 TGCTGTCGTAGAAGTGTTCCA 59.316 47.619 0.00 0.00 39.69 3.53
2612 2687 2.299013 TGCTGTCGTAGAAGTGTTCCAT 59.701 45.455 0.00 0.00 39.69 3.41
2613 2688 2.668457 GCTGTCGTAGAAGTGTTCCATG 59.332 50.000 0.00 0.00 39.69 3.66
2614 2689 3.614150 GCTGTCGTAGAAGTGTTCCATGA 60.614 47.826 0.00 0.00 39.69 3.07
2615 2690 3.909430 TGTCGTAGAAGTGTTCCATGAC 58.091 45.455 0.00 1.80 39.69 3.06
2616 2691 3.319689 TGTCGTAGAAGTGTTCCATGACA 59.680 43.478 6.17 6.17 42.33 3.58
2617 2692 4.021456 TGTCGTAGAAGTGTTCCATGACAT 60.021 41.667 6.17 0.00 40.63 3.06
2618 2693 4.929808 GTCGTAGAAGTGTTCCATGACATT 59.070 41.667 0.00 0.00 39.69 2.71
2619 2694 6.097356 GTCGTAGAAGTGTTCCATGACATTA 58.903 40.000 0.00 0.00 39.69 1.90
2620 2695 6.034683 GTCGTAGAAGTGTTCCATGACATTAC 59.965 42.308 0.00 0.00 39.69 1.89
2621 2696 5.291128 CGTAGAAGTGTTCCATGACATTACC 59.709 44.000 0.00 0.00 0.00 2.85
2622 2697 5.241403 AGAAGTGTTCCATGACATTACCA 57.759 39.130 0.00 0.00 0.00 3.25
2623 2698 5.630121 AGAAGTGTTCCATGACATTACCAA 58.370 37.500 0.00 0.00 0.00 3.67
2624 2699 6.068010 AGAAGTGTTCCATGACATTACCAAA 58.932 36.000 0.00 0.00 0.00 3.28
2625 2700 6.549364 AGAAGTGTTCCATGACATTACCAAAA 59.451 34.615 0.00 0.00 0.00 2.44
2626 2701 6.916360 AGTGTTCCATGACATTACCAAAAT 57.084 33.333 0.00 0.00 0.00 1.82
2627 2702 7.301868 AGTGTTCCATGACATTACCAAAATT 57.698 32.000 0.00 0.00 0.00 1.82
2628 2703 8.415950 AGTGTTCCATGACATTACCAAAATTA 57.584 30.769 0.00 0.00 0.00 1.40
2629 2704 9.034800 AGTGTTCCATGACATTACCAAAATTAT 57.965 29.630 0.00 0.00 0.00 1.28
2630 2705 9.301153 GTGTTCCATGACATTACCAAAATTATC 57.699 33.333 0.00 0.00 0.00 1.75
2631 2706 9.029368 TGTTCCATGACATTACCAAAATTATCA 57.971 29.630 0.00 0.00 0.00 2.15
2634 2709 9.418839 TCCATGACATTACCAAAATTATCATCA 57.581 29.630 0.00 0.00 0.00 3.07
2635 2710 9.467258 CCATGACATTACCAAAATTATCATCAC 57.533 33.333 0.00 0.00 0.00 3.06
2636 2711 9.172820 CATGACATTACCAAAATTATCATCACG 57.827 33.333 0.00 0.00 0.00 4.35
2637 2712 7.702386 TGACATTACCAAAATTATCATCACGG 58.298 34.615 0.00 0.00 0.00 4.94
2638 2713 7.554476 TGACATTACCAAAATTATCATCACGGA 59.446 33.333 0.00 0.00 0.00 4.69
2639 2714 8.287439 ACATTACCAAAATTATCATCACGGAA 57.713 30.769 0.00 0.00 0.00 4.30
2640 2715 8.405531 ACATTACCAAAATTATCATCACGGAAG 58.594 33.333 0.00 0.00 0.00 3.46
2661 2736 5.698741 AGTGTCCACTTCCATGATGATAA 57.301 39.130 0.00 0.00 38.83 1.75
2662 2737 6.065976 AGTGTCCACTTCCATGATGATAAA 57.934 37.500 0.00 0.00 38.83 1.40
2663 2738 6.666678 AGTGTCCACTTCCATGATGATAAAT 58.333 36.000 0.00 0.00 38.83 1.40
2664 2739 6.769822 AGTGTCCACTTCCATGATGATAAATC 59.230 38.462 0.00 0.00 38.83 2.17
2665 2740 5.759763 TGTCCACTTCCATGATGATAAATCG 59.240 40.000 0.00 0.00 0.00 3.34
2666 2741 4.756642 TCCACTTCCATGATGATAAATCGC 59.243 41.667 0.00 0.00 0.00 4.58
2667 2742 4.377738 CCACTTCCATGATGATAAATCGCG 60.378 45.833 0.00 0.00 0.00 5.87
2668 2743 3.187227 ACTTCCATGATGATAAATCGCGC 59.813 43.478 0.00 0.00 0.00 6.86
2669 2744 2.765122 TCCATGATGATAAATCGCGCA 58.235 42.857 8.75 0.00 0.00 6.09
2670 2745 3.337358 TCCATGATGATAAATCGCGCAT 58.663 40.909 8.75 0.00 0.00 4.73
2671 2746 3.371898 TCCATGATGATAAATCGCGCATC 59.628 43.478 8.75 13.17 38.05 3.91
2673 2748 3.793776 TGATGATAAATCGCGCATCAC 57.206 42.857 17.23 10.73 41.37 3.06
2674 2749 3.129871 TGATGATAAATCGCGCATCACA 58.870 40.909 17.23 12.45 41.37 3.58
2675 2750 3.184986 TGATGATAAATCGCGCATCACAG 59.815 43.478 17.23 0.00 41.37 3.66
2676 2751 2.820330 TGATAAATCGCGCATCACAGA 58.180 42.857 8.75 0.00 0.00 3.41
2677 2752 3.194062 TGATAAATCGCGCATCACAGAA 58.806 40.909 8.75 0.00 0.00 3.02
2678 2753 3.245990 TGATAAATCGCGCATCACAGAAG 59.754 43.478 8.75 0.00 0.00 2.85
2679 2754 1.442769 AAATCGCGCATCACAGAAGT 58.557 45.000 8.75 0.00 0.00 3.01
2681 2756 1.699656 ATCGCGCATCACAGAAGTGC 61.700 55.000 8.75 0.00 45.49 4.40
2682 2757 2.385875 CGCGCATCACAGAAGTGCT 61.386 57.895 8.75 0.00 45.49 4.40
2683 2758 1.871772 GCGCATCACAGAAGTGCTT 59.128 52.632 0.30 0.00 45.49 3.91
2684 2759 0.239347 GCGCATCACAGAAGTGCTTT 59.761 50.000 0.30 0.00 45.49 3.51
2685 2760 1.727213 GCGCATCACAGAAGTGCTTTC 60.727 52.381 0.30 0.00 45.49 2.62
2686 2761 1.463034 CGCATCACAGAAGTGCTTTCG 60.463 52.381 0.00 0.00 45.49 3.46
2687 2762 1.532868 GCATCACAGAAGTGCTTTCGT 59.467 47.619 0.00 0.00 45.49 3.85
2688 2763 2.412065 GCATCACAGAAGTGCTTTCGTC 60.412 50.000 0.00 0.00 45.49 4.20
2689 2764 2.595124 TCACAGAAGTGCTTTCGTCA 57.405 45.000 0.00 0.00 45.49 4.35
2690 2765 2.899976 TCACAGAAGTGCTTTCGTCAA 58.100 42.857 0.00 0.00 45.49 3.18
2691 2766 2.866156 TCACAGAAGTGCTTTCGTCAAG 59.134 45.455 0.00 0.00 45.49 3.02
2692 2767 2.032549 CACAGAAGTGCTTTCGTCAAGG 60.033 50.000 0.00 0.00 40.86 3.61
2693 2768 1.532868 CAGAAGTGCTTTCGTCAAGGG 59.467 52.381 0.00 0.00 40.86 3.95
2694 2769 1.141053 AGAAGTGCTTTCGTCAAGGGT 59.859 47.619 0.00 0.00 40.86 4.34
2695 2770 1.264288 GAAGTGCTTTCGTCAAGGGTG 59.736 52.381 0.00 0.00 32.37 4.61
2696 2771 0.468226 AGTGCTTTCGTCAAGGGTGA 59.532 50.000 0.00 0.00 32.37 4.02
2710 2785 2.357034 GTGACCGACACGTGGCAT 60.357 61.111 23.63 8.84 39.78 4.40
2711 2786 2.048597 TGACCGACACGTGGCATC 60.049 61.111 23.63 18.45 0.00 3.91
2712 2787 2.813908 GACCGACACGTGGCATCC 60.814 66.667 23.63 5.09 0.00 3.51
2713 2788 3.583276 GACCGACACGTGGCATCCA 62.583 63.158 23.63 0.00 0.00 3.41
2723 2798 2.367529 TGGCATCCACTGTAACGGA 58.632 52.632 0.00 0.00 35.27 4.69
2724 2799 0.687920 TGGCATCCACTGTAACGGAA 59.312 50.000 0.00 0.00 34.22 4.30
2725 2800 1.084289 GGCATCCACTGTAACGGAAC 58.916 55.000 0.00 0.00 34.22 3.62
2726 2801 1.609580 GGCATCCACTGTAACGGAACA 60.610 52.381 0.00 0.00 34.22 3.18
2727 2802 1.463444 GCATCCACTGTAACGGAACAC 59.537 52.381 0.00 0.00 34.22 3.32
2728 2803 2.073816 CATCCACTGTAACGGAACACC 58.926 52.381 0.00 0.00 34.22 4.16
2740 2815 1.850441 CGGAACACCGTTAAGCTATCG 59.150 52.381 0.00 0.00 41.61 2.92
2745 2820 3.174790 CCGTTAAGCTATCGGGTCG 57.825 57.895 13.87 1.66 40.49 4.79
2746 2821 0.318445 CCGTTAAGCTATCGGGTCGG 60.318 60.000 13.87 6.24 40.49 4.79
2747 2822 0.318445 CGTTAAGCTATCGGGTCGGG 60.318 60.000 0.00 0.00 0.00 5.14
2748 2823 0.749049 GTTAAGCTATCGGGTCGGGT 59.251 55.000 0.00 0.00 0.00 5.28
2749 2824 1.137675 GTTAAGCTATCGGGTCGGGTT 59.862 52.381 0.00 0.00 0.00 4.11
2750 2825 1.488390 TAAGCTATCGGGTCGGGTTT 58.512 50.000 0.00 0.00 0.00 3.27
2751 2826 0.616891 AAGCTATCGGGTCGGGTTTT 59.383 50.000 0.00 0.00 0.00 2.43
2752 2827 0.107848 AGCTATCGGGTCGGGTTTTG 60.108 55.000 0.00 0.00 0.00 2.44
2753 2828 1.093496 GCTATCGGGTCGGGTTTTGG 61.093 60.000 0.00 0.00 0.00 3.28
2754 2829 0.538118 CTATCGGGTCGGGTTTTGGA 59.462 55.000 0.00 0.00 0.00 3.53
2755 2830 1.140252 CTATCGGGTCGGGTTTTGGAT 59.860 52.381 0.00 0.00 0.00 3.41
2756 2831 0.107361 ATCGGGTCGGGTTTTGGATC 60.107 55.000 0.00 0.00 0.00 3.36
2757 2832 1.747745 CGGGTCGGGTTTTGGATCC 60.748 63.158 4.20 4.20 0.00 3.36
2758 2833 1.747745 GGGTCGGGTTTTGGATCCG 60.748 63.158 7.39 0.00 44.59 4.18
2763 2838 2.908916 TCGGGTTTTGGATCCGATAAC 58.091 47.619 7.39 10.62 46.48 1.89
2764 2839 1.944709 CGGGTTTTGGATCCGATAACC 59.055 52.381 24.06 24.06 45.96 2.85
2766 2841 1.944709 GGTTTTGGATCCGATAACCCG 59.055 52.381 22.63 0.00 33.72 5.28
2767 2842 2.635714 GTTTTGGATCCGATAACCCGT 58.364 47.619 7.39 0.00 0.00 5.28
2768 2843 3.011818 GTTTTGGATCCGATAACCCGTT 58.988 45.455 7.39 0.00 0.00 4.44
2769 2844 4.190772 GTTTTGGATCCGATAACCCGTTA 58.809 43.478 7.39 0.00 0.00 3.18
2770 2845 4.484537 TTTGGATCCGATAACCCGTTAA 57.515 40.909 7.39 0.00 0.00 2.01
2771 2846 3.457610 TGGATCCGATAACCCGTTAAC 57.542 47.619 7.39 0.00 0.00 2.01
2772 2847 2.765135 TGGATCCGATAACCCGTTAACA 59.235 45.455 7.39 0.00 0.00 2.41
2773 2848 3.181473 TGGATCCGATAACCCGTTAACAG 60.181 47.826 7.39 0.00 0.00 3.16
2774 2849 2.298411 TCCGATAACCCGTTAACAGC 57.702 50.000 6.39 0.00 0.00 4.40
2775 2850 1.134729 TCCGATAACCCGTTAACAGCC 60.135 52.381 6.39 0.00 0.00 4.85
2776 2851 1.292992 CGATAACCCGTTAACAGCCC 58.707 55.000 6.39 0.00 0.00 5.19
2777 2852 1.671979 GATAACCCGTTAACAGCCCC 58.328 55.000 6.39 0.00 0.00 5.80
2778 2853 0.107557 ATAACCCGTTAACAGCCCCG 60.108 55.000 6.39 0.00 0.00 5.73
2779 2854 1.190833 TAACCCGTTAACAGCCCCGA 61.191 55.000 6.39 0.00 0.00 5.14
2780 2855 2.435410 CCCGTTAACAGCCCCGAC 60.435 66.667 6.39 0.00 0.00 4.79
2781 2856 2.435410 CCGTTAACAGCCCCGACC 60.435 66.667 6.39 0.00 0.00 4.79
2782 2857 2.344500 CGTTAACAGCCCCGACCA 59.656 61.111 6.39 0.00 0.00 4.02
2783 2858 1.301874 CGTTAACAGCCCCGACCAA 60.302 57.895 6.39 0.00 0.00 3.67
2784 2859 0.675522 CGTTAACAGCCCCGACCAAT 60.676 55.000 6.39 0.00 0.00 3.16
2785 2860 0.808755 GTTAACAGCCCCGACCAATG 59.191 55.000 0.00 0.00 0.00 2.82
2786 2861 0.322997 TTAACAGCCCCGACCAATGG 60.323 55.000 0.00 0.00 0.00 3.16
2787 2862 2.204865 TAACAGCCCCGACCAATGGG 62.205 60.000 3.55 0.00 46.93 4.00
2793 2868 3.298320 CCCGACCAATGGGGATTTT 57.702 52.632 3.55 0.00 46.95 1.82
2794 2869 1.111277 CCCGACCAATGGGGATTTTC 58.889 55.000 3.55 0.00 46.95 2.29
2795 2870 1.111277 CCGACCAATGGGGATTTTCC 58.889 55.000 3.55 0.00 41.15 3.13
2796 2871 1.618345 CCGACCAATGGGGATTTTCCA 60.618 52.381 3.55 0.00 38.64 3.53
2797 2872 1.476488 CGACCAATGGGGATTTTCCAC 59.524 52.381 3.55 0.00 41.45 4.02
2798 2873 1.476488 GACCAATGGGGATTTTCCACG 59.524 52.381 3.55 0.00 45.00 4.94
2799 2874 1.203125 ACCAATGGGGATTTTCCACGT 60.203 47.619 3.55 0.00 45.00 4.49
2800 2875 1.204467 CCAATGGGGATTTTCCACGTG 59.796 52.381 9.08 9.08 45.00 4.49
2801 2876 1.892474 CAATGGGGATTTTCCACGTGT 59.108 47.619 15.65 0.00 45.00 4.49
2802 2877 3.085533 CAATGGGGATTTTCCACGTGTA 58.914 45.455 15.65 0.00 45.00 2.90
2803 2878 2.953284 TGGGGATTTTCCACGTGTAA 57.047 45.000 15.65 1.07 45.00 2.41
2804 2879 3.225177 TGGGGATTTTCCACGTGTAAA 57.775 42.857 15.65 14.28 45.00 2.01
2805 2880 3.563223 TGGGGATTTTCCACGTGTAAAA 58.437 40.909 19.43 19.43 45.00 1.52
2806 2881 4.153411 TGGGGATTTTCCACGTGTAAAAT 58.847 39.130 25.95 25.95 45.00 1.82
2807 2882 4.218852 TGGGGATTTTCCACGTGTAAAATC 59.781 41.667 33.88 33.88 45.00 2.17
2808 2883 4.218852 GGGGATTTTCCACGTGTAAAATCA 59.781 41.667 37.89 16.74 46.62 2.57
2809 2884 5.105513 GGGGATTTTCCACGTGTAAAATCAT 60.106 40.000 37.89 20.35 46.62 2.45
2810 2885 6.033966 GGGATTTTCCACGTGTAAAATCATC 58.966 40.000 37.89 30.08 46.62 2.92
2811 2886 6.349777 GGGATTTTCCACGTGTAAAATCATCA 60.350 38.462 37.89 15.58 46.62 3.07
2812 2887 7.257722 GGATTTTCCACGTGTAAAATCATCAT 58.742 34.615 37.89 19.23 46.62 2.45
2813 2888 7.759433 GGATTTTCCACGTGTAAAATCATCATT 59.241 33.333 37.89 18.67 46.62 2.57
2814 2889 7.865875 TTTTCCACGTGTAAAATCATCATTG 57.134 32.000 14.20 0.00 0.00 2.82
2815 2890 5.559427 TCCACGTGTAAAATCATCATTGG 57.441 39.130 15.65 0.00 0.00 3.16
2816 2891 4.104776 CCACGTGTAAAATCATCATTGGC 58.895 43.478 15.65 0.00 0.00 4.52
2817 2892 4.142403 CCACGTGTAAAATCATCATTGGCT 60.142 41.667 15.65 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
409 414 5.473162 ACACACAGCAAGCACTAATAATTCA 59.527 36.000 0.00 0.00 0.00 2.57
579 584 3.634397 TCAGCTAGCTGTTGCCTAAAT 57.366 42.857 36.99 1.57 43.96 1.40
591 596 6.259608 ACTCAACAAACATATCATCAGCTAGC 59.740 38.462 6.62 6.62 0.00 3.42
698 706 2.997315 ACCACTGCCGCAGCTAGA 60.997 61.111 20.56 0.00 40.80 2.43
811 875 8.908678 GCATATACAAAATACAACATGCATCAG 58.091 33.333 0.00 0.00 37.92 2.90
921 989 9.860898 ATGGTTCTACAAAGAGATAAAAATTGC 57.139 29.630 0.00 0.00 31.96 3.56
949 1017 4.015084 CTCCTTGTACCTACTTCTTCGGA 58.985 47.826 0.00 0.00 0.00 4.55
987 1055 4.072839 CAACATCCATCTCATCATCCCAG 58.927 47.826 0.00 0.00 0.00 4.45
1007 1075 5.299028 TCAACTAAGACTTCAAGCAATGCAA 59.701 36.000 8.35 0.00 0.00 4.08
1470 1542 1.071471 CACCTGTCTTCGCACCCTT 59.929 57.895 0.00 0.00 0.00 3.95
1600 1672 6.425114 TGTCTTGAAAGCATCAACTAAGTCTC 59.575 38.462 1.23 0.00 43.08 3.36
1601 1673 6.291377 TGTCTTGAAAGCATCAACTAAGTCT 58.709 36.000 1.23 0.00 43.08 3.24
1854 1927 9.559958 CCAAGTTCAACATGACATAAAATAGAC 57.440 33.333 0.00 0.00 0.00 2.59
1887 1960 7.047891 TCCAAGTTCAATAAGGCAGTACATAG 58.952 38.462 0.00 0.00 0.00 2.23
1901 1974 9.383519 CAGTACATACATAGTTCCAAGTTCAAT 57.616 33.333 0.00 0.00 0.00 2.57
2249 2324 0.975887 TTGGCCCTTGAAATGCCTTC 59.024 50.000 0.00 0.00 45.56 3.46
2250 2325 1.660242 ATTGGCCCTTGAAATGCCTT 58.340 45.000 0.00 0.00 45.56 4.35
2303 2378 4.118168 AGTGTGGAAACTGAAATGGGAT 57.882 40.909 0.00 0.00 0.00 3.85
2388 2463 3.884693 ACATGATTCGAAGCCAATGCATA 59.115 39.130 11.45 0.00 41.13 3.14
2392 2467 4.627611 AAGACATGATTCGAAGCCAATG 57.372 40.909 11.45 11.20 0.00 2.82
2393 2468 4.142315 CCAAAGACATGATTCGAAGCCAAT 60.142 41.667 11.45 0.00 0.00 3.16
2395 2470 2.749076 CCAAAGACATGATTCGAAGCCA 59.251 45.455 11.45 8.18 0.00 4.75
2396 2471 2.749621 ACCAAAGACATGATTCGAAGCC 59.250 45.455 11.45 2.09 0.00 4.35
2397 2472 3.436704 TGACCAAAGACATGATTCGAAGC 59.563 43.478 6.43 6.43 0.00 3.86
2398 2473 5.611796 TTGACCAAAGACATGATTCGAAG 57.388 39.130 3.35 0.00 0.00 3.79
2399 2474 6.878923 ACTATTGACCAAAGACATGATTCGAA 59.121 34.615 0.00 0.00 0.00 3.71
2400 2475 6.406370 ACTATTGACCAAAGACATGATTCGA 58.594 36.000 0.00 0.00 0.00 3.71
2401 2476 6.668541 ACTATTGACCAAAGACATGATTCG 57.331 37.500 0.00 0.00 0.00 3.34
2402 2477 7.253422 CCAACTATTGACCAAAGACATGATTC 58.747 38.462 0.00 0.00 0.00 2.52
2403 2478 6.153340 CCCAACTATTGACCAAAGACATGATT 59.847 38.462 0.00 0.00 0.00 2.57
2404 2479 5.653769 CCCAACTATTGACCAAAGACATGAT 59.346 40.000 0.00 0.00 0.00 2.45
2405 2480 5.009631 CCCAACTATTGACCAAAGACATGA 58.990 41.667 0.00 0.00 0.00 3.07
2406 2481 4.766891 ACCCAACTATTGACCAAAGACATG 59.233 41.667 0.00 0.00 0.00 3.21
2407 2482 4.998051 ACCCAACTATTGACCAAAGACAT 58.002 39.130 0.00 0.00 0.00 3.06
2408 2483 4.447138 ACCCAACTATTGACCAAAGACA 57.553 40.909 0.00 0.00 0.00 3.41
2409 2484 4.558697 GCAACCCAACTATTGACCAAAGAC 60.559 45.833 0.00 0.00 0.00 3.01
2410 2485 3.572255 GCAACCCAACTATTGACCAAAGA 59.428 43.478 0.00 0.00 0.00 2.52
2411 2486 3.611530 CGCAACCCAACTATTGACCAAAG 60.612 47.826 0.00 0.00 0.00 2.77
2412 2487 2.294791 CGCAACCCAACTATTGACCAAA 59.705 45.455 0.00 0.00 0.00 3.28
2413 2488 1.883275 CGCAACCCAACTATTGACCAA 59.117 47.619 0.00 0.00 0.00 3.67
2414 2489 1.529226 CGCAACCCAACTATTGACCA 58.471 50.000 0.00 0.00 0.00 4.02
2415 2490 0.170339 GCGCAACCCAACTATTGACC 59.830 55.000 0.30 0.00 0.00 4.02
2416 2491 0.179200 CGCGCAACCCAACTATTGAC 60.179 55.000 8.75 0.00 0.00 3.18
2417 2492 1.302383 CCGCGCAACCCAACTATTGA 61.302 55.000 8.75 0.00 0.00 2.57
2418 2493 1.136565 CCGCGCAACCCAACTATTG 59.863 57.895 8.75 0.00 0.00 1.90
2419 2494 2.696759 GCCGCGCAACCCAACTATT 61.697 57.895 8.75 0.00 0.00 1.73
2420 2495 3.131478 GCCGCGCAACCCAACTAT 61.131 61.111 8.75 0.00 0.00 2.12
2421 2496 4.323477 AGCCGCGCAACCCAACTA 62.323 61.111 8.75 0.00 0.00 2.24
2434 2509 2.432456 TAGCAAGCACACGAGCCG 60.432 61.111 0.00 0.00 34.23 5.52
2435 2510 2.391389 GGTAGCAAGCACACGAGCC 61.391 63.158 0.00 0.00 34.23 4.70
2436 2511 0.951040 AAGGTAGCAAGCACACGAGC 60.951 55.000 0.00 0.00 0.00 5.03
2437 2512 1.993370 GTAAGGTAGCAAGCACACGAG 59.007 52.381 0.00 0.00 0.00 4.18
2438 2513 1.667756 CGTAAGGTAGCAAGCACACGA 60.668 52.381 0.00 0.00 35.71 4.35
2439 2514 0.713883 CGTAAGGTAGCAAGCACACG 59.286 55.000 0.00 0.00 0.00 4.49
2440 2515 1.792006 ACGTAAGGTAGCAAGCACAC 58.208 50.000 0.00 0.00 46.39 3.82
2441 2516 2.409975 GAACGTAAGGTAGCAAGCACA 58.590 47.619 0.00 0.00 37.50 4.57
2442 2517 1.730612 GGAACGTAAGGTAGCAAGCAC 59.269 52.381 0.00 0.00 37.50 4.40
2443 2518 2.088950 GGAACGTAAGGTAGCAAGCA 57.911 50.000 0.00 0.00 37.50 3.91
2463 2538 4.436242 TTGTAGTGCTAGCCGATATAGC 57.564 45.455 13.29 6.56 44.81 2.97
2493 2568 8.277329 ATGACAAACATGTATCATCACGGAAGT 61.277 37.037 12.23 0.00 41.11 3.01
2494 2569 5.351189 TGACAAACATGTATCATCACGGAAG 59.649 40.000 0.00 0.00 0.00 3.46
2495 2570 5.241662 TGACAAACATGTATCATCACGGAA 58.758 37.500 0.00 0.00 0.00 4.30
2496 2571 4.826556 TGACAAACATGTATCATCACGGA 58.173 39.130 0.00 0.00 0.00 4.69
2497 2572 5.739752 ATGACAAACATGTATCATCACGG 57.260 39.130 12.23 0.00 37.87 4.94
2498 2573 7.468922 ACTATGACAAACATGTATCATCACG 57.531 36.000 18.46 12.80 39.77 4.35
2499 2574 8.982685 CCTACTATGACAAACATGTATCATCAC 58.017 37.037 18.46 1.84 39.77 3.06
2500 2575 8.704668 ACCTACTATGACAAACATGTATCATCA 58.295 33.333 18.46 12.04 39.77 3.07
2501 2576 9.197694 GACCTACTATGACAAACATGTATCATC 57.802 37.037 18.46 7.60 39.77 2.92
2502 2577 7.867909 CGACCTACTATGACAAACATGTATCAT 59.132 37.037 18.76 18.76 39.77 2.45
2503 2578 7.200455 CGACCTACTATGACAAACATGTATCA 58.800 38.462 0.00 4.21 39.77 2.15
2504 2579 6.144080 GCGACCTACTATGACAAACATGTATC 59.856 42.308 0.00 0.00 39.77 2.24
2505 2580 5.983720 GCGACCTACTATGACAAACATGTAT 59.016 40.000 0.00 0.00 39.77 2.29
2506 2581 5.345702 GCGACCTACTATGACAAACATGTA 58.654 41.667 0.00 0.00 39.77 2.29
2507 2582 4.181578 GCGACCTACTATGACAAACATGT 58.818 43.478 0.00 0.00 39.77 3.21
2508 2583 3.242944 CGCGACCTACTATGACAAACATG 59.757 47.826 0.00 0.00 39.77 3.21
2509 2584 3.119245 ACGCGACCTACTATGACAAACAT 60.119 43.478 15.93 0.00 42.39 2.71
2510 2585 2.229543 ACGCGACCTACTATGACAAACA 59.770 45.455 15.93 0.00 0.00 2.83
2511 2586 2.872370 ACGCGACCTACTATGACAAAC 58.128 47.619 15.93 0.00 0.00 2.93
2512 2587 3.581024 AACGCGACCTACTATGACAAA 57.419 42.857 15.93 0.00 0.00 2.83
2513 2588 3.581024 AAACGCGACCTACTATGACAA 57.419 42.857 15.93 0.00 0.00 3.18
2514 2589 3.581024 AAAACGCGACCTACTATGACA 57.419 42.857 15.93 0.00 0.00 3.58
2532 2607 5.718724 TGGATGTACATGCATGACAAAAA 57.281 34.783 32.75 16.53 34.14 1.94
2533 2608 5.918426 ATGGATGTACATGCATGACAAAA 57.082 34.783 33.87 18.90 46.05 2.44
2541 2616 2.977772 TCGTCATGGATGTACATGCA 57.022 45.000 29.03 29.03 46.02 3.96
2542 2617 4.818534 AAATCGTCATGGATGTACATGC 57.181 40.909 19.53 19.53 46.02 4.06
2544 2619 7.714813 TGTCATAAAATCGTCATGGATGTACAT 59.285 33.333 8.43 8.43 0.00 2.29
2545 2620 7.044798 TGTCATAAAATCGTCATGGATGTACA 58.955 34.615 0.00 0.00 0.00 2.90
2546 2621 7.438160 TCTGTCATAAAATCGTCATGGATGTAC 59.562 37.037 0.00 0.00 0.00 2.90
2547 2622 7.496747 TCTGTCATAAAATCGTCATGGATGTA 58.503 34.615 0.00 0.00 0.00 2.29
2548 2623 6.348498 TCTGTCATAAAATCGTCATGGATGT 58.652 36.000 0.00 0.00 0.00 3.06
2549 2624 6.849588 TCTGTCATAAAATCGTCATGGATG 57.150 37.500 0.00 0.00 0.00 3.51
2550 2625 7.716560 TGATTCTGTCATAAAATCGTCATGGAT 59.283 33.333 0.00 0.00 33.13 3.41
2551 2626 7.047271 TGATTCTGTCATAAAATCGTCATGGA 58.953 34.615 0.00 0.00 33.13 3.41
2552 2627 7.250445 TGATTCTGTCATAAAATCGTCATGG 57.750 36.000 0.00 0.00 33.13 3.66
2553 2628 8.606602 TCTTGATTCTGTCATAAAATCGTCATG 58.393 33.333 0.00 0.00 36.54 3.07
2554 2629 8.722480 TCTTGATTCTGTCATAAAATCGTCAT 57.278 30.769 0.00 0.00 36.54 3.06
2555 2630 8.722480 ATCTTGATTCTGTCATAAAATCGTCA 57.278 30.769 0.00 0.00 36.54 4.35
2557 2632 9.823647 ACTATCTTGATTCTGTCATAAAATCGT 57.176 29.630 0.00 0.00 36.54 3.73
2562 2637 9.383519 GGTTGACTATCTTGATTCTGTCATAAA 57.616 33.333 11.41 0.85 36.54 1.40
2563 2638 8.762645 AGGTTGACTATCTTGATTCTGTCATAA 58.237 33.333 11.41 1.31 36.54 1.90
2564 2639 8.311395 AGGTTGACTATCTTGATTCTGTCATA 57.689 34.615 11.41 4.73 36.54 2.15
2565 2640 7.192852 AGGTTGACTATCTTGATTCTGTCAT 57.807 36.000 11.41 0.85 36.54 3.06
2566 2641 6.611613 AGGTTGACTATCTTGATTCTGTCA 57.388 37.500 0.00 0.00 33.41 3.58
2567 2642 7.170658 GCATAGGTTGACTATCTTGATTCTGTC 59.829 40.741 0.00 0.00 40.42 3.51
2568 2643 6.989169 GCATAGGTTGACTATCTTGATTCTGT 59.011 38.462 0.00 0.00 40.42 3.41
2569 2644 7.171167 CAGCATAGGTTGACTATCTTGATTCTG 59.829 40.741 0.00 0.00 40.42 3.02
2570 2645 7.147585 ACAGCATAGGTTGACTATCTTGATTCT 60.148 37.037 0.00 0.00 40.42 2.40
2571 2646 6.989169 ACAGCATAGGTTGACTATCTTGATTC 59.011 38.462 0.00 0.00 40.42 2.52
2572 2647 6.893583 ACAGCATAGGTTGACTATCTTGATT 58.106 36.000 0.00 0.00 40.42 2.57
2573 2648 6.491714 ACAGCATAGGTTGACTATCTTGAT 57.508 37.500 0.00 0.00 40.42 2.57
2574 2649 5.450550 CGACAGCATAGGTTGACTATCTTGA 60.451 44.000 0.00 0.00 40.42 3.02
2575 2650 4.742167 CGACAGCATAGGTTGACTATCTTG 59.258 45.833 0.00 0.00 40.42 3.02
2576 2651 4.402793 ACGACAGCATAGGTTGACTATCTT 59.597 41.667 0.00 0.00 40.42 2.40
2577 2652 3.954904 ACGACAGCATAGGTTGACTATCT 59.045 43.478 0.00 0.00 40.42 1.98
2578 2653 4.308899 ACGACAGCATAGGTTGACTATC 57.691 45.455 0.00 0.00 40.42 2.08
2579 2654 5.131067 TCTACGACAGCATAGGTTGACTAT 58.869 41.667 0.00 0.00 43.18 2.12
2580 2655 4.520179 TCTACGACAGCATAGGTTGACTA 58.480 43.478 0.00 0.00 35.80 2.59
2581 2656 3.353557 TCTACGACAGCATAGGTTGACT 58.646 45.455 0.00 0.00 0.00 3.41
2582 2657 3.777465 TCTACGACAGCATAGGTTGAC 57.223 47.619 0.00 0.00 0.00 3.18
2583 2658 3.762288 ACTTCTACGACAGCATAGGTTGA 59.238 43.478 0.00 0.00 0.00 3.18
2584 2659 3.859961 CACTTCTACGACAGCATAGGTTG 59.140 47.826 0.00 0.00 0.00 3.77
2585 2660 3.510360 ACACTTCTACGACAGCATAGGTT 59.490 43.478 0.00 0.00 0.00 3.50
2586 2661 3.090037 ACACTTCTACGACAGCATAGGT 58.910 45.455 0.00 0.00 0.00 3.08
2587 2662 3.784701 ACACTTCTACGACAGCATAGG 57.215 47.619 0.00 0.00 0.00 2.57
2588 2663 4.106197 GGAACACTTCTACGACAGCATAG 58.894 47.826 0.00 0.00 0.00 2.23
2589 2664 3.508402 TGGAACACTTCTACGACAGCATA 59.492 43.478 0.00 0.00 0.00 3.14
2590 2665 2.299013 TGGAACACTTCTACGACAGCAT 59.701 45.455 0.00 0.00 0.00 3.79
2591 2666 1.684450 TGGAACACTTCTACGACAGCA 59.316 47.619 0.00 0.00 0.00 4.41
2592 2667 2.433868 TGGAACACTTCTACGACAGC 57.566 50.000 0.00 0.00 0.00 4.40
2608 2683 9.418839 TGATGATAATTTTGGTAATGTCATGGA 57.581 29.630 0.00 0.00 0.00 3.41
2609 2684 9.467258 GTGATGATAATTTTGGTAATGTCATGG 57.533 33.333 0.00 0.00 0.00 3.66
2610 2685 9.172820 CGTGATGATAATTTTGGTAATGTCATG 57.827 33.333 0.00 0.00 0.00 3.07
2611 2686 8.352201 CCGTGATGATAATTTTGGTAATGTCAT 58.648 33.333 0.00 0.00 0.00 3.06
2612 2687 7.554476 TCCGTGATGATAATTTTGGTAATGTCA 59.446 33.333 0.00 0.00 0.00 3.58
2613 2688 7.925993 TCCGTGATGATAATTTTGGTAATGTC 58.074 34.615 0.00 0.00 0.00 3.06
2614 2689 7.873719 TCCGTGATGATAATTTTGGTAATGT 57.126 32.000 0.00 0.00 0.00 2.71
2615 2690 8.405531 ACTTCCGTGATGATAATTTTGGTAATG 58.594 33.333 0.00 0.00 0.00 1.90
2616 2691 8.405531 CACTTCCGTGATGATAATTTTGGTAAT 58.594 33.333 0.00 0.00 43.97 1.89
2617 2692 7.392113 ACACTTCCGTGATGATAATTTTGGTAA 59.608 33.333 0.00 0.00 43.97 2.85
2618 2693 6.882140 ACACTTCCGTGATGATAATTTTGGTA 59.118 34.615 0.00 0.00 43.97 3.25
2619 2694 5.710099 ACACTTCCGTGATGATAATTTTGGT 59.290 36.000 0.00 0.00 43.97 3.67
2620 2695 6.194796 ACACTTCCGTGATGATAATTTTGG 57.805 37.500 0.00 0.00 43.97 3.28
2621 2696 6.128035 TGGACACTTCCGTGATGATAATTTTG 60.128 38.462 0.00 0.00 46.37 2.44
2622 2697 5.943416 TGGACACTTCCGTGATGATAATTTT 59.057 36.000 0.00 0.00 46.37 1.82
2623 2698 5.354234 GTGGACACTTCCGTGATGATAATTT 59.646 40.000 0.00 0.00 46.37 1.82
2624 2699 4.876107 GTGGACACTTCCGTGATGATAATT 59.124 41.667 0.00 0.00 46.37 1.40
2625 2700 4.162320 AGTGGACACTTCCGTGATGATAAT 59.838 41.667 0.00 0.00 46.37 1.28
2626 2701 3.513912 AGTGGACACTTCCGTGATGATAA 59.486 43.478 0.00 0.00 46.37 1.75
2627 2702 3.096852 AGTGGACACTTCCGTGATGATA 58.903 45.455 0.00 0.00 46.37 2.15
2628 2703 1.902508 AGTGGACACTTCCGTGATGAT 59.097 47.619 0.00 0.00 46.37 2.45
2629 2704 1.338107 AGTGGACACTTCCGTGATGA 58.662 50.000 0.00 0.00 46.37 2.92
2630 2705 3.914984 AGTGGACACTTCCGTGATG 57.085 52.632 0.00 0.00 46.37 3.07
2639 2714 5.698741 TTATCATCATGGAAGTGGACACT 57.301 39.130 0.00 0.00 44.94 3.55
2640 2715 6.293081 CGATTTATCATCATGGAAGTGGACAC 60.293 42.308 0.00 0.00 0.00 3.67
2641 2716 5.759763 CGATTTATCATCATGGAAGTGGACA 59.240 40.000 0.00 0.00 0.00 4.02
2642 2717 5.334414 GCGATTTATCATCATGGAAGTGGAC 60.334 44.000 0.00 0.00 0.00 4.02
2643 2718 4.756642 GCGATTTATCATCATGGAAGTGGA 59.243 41.667 0.00 0.00 0.00 4.02
2644 2719 4.377738 CGCGATTTATCATCATGGAAGTGG 60.378 45.833 0.00 0.00 0.00 4.00
2645 2720 4.705492 CGCGATTTATCATCATGGAAGTG 58.295 43.478 0.00 0.00 0.00 3.16
2646 2721 3.187227 GCGCGATTTATCATCATGGAAGT 59.813 43.478 12.10 0.00 0.00 3.01
2647 2722 3.187022 TGCGCGATTTATCATCATGGAAG 59.813 43.478 12.10 0.00 0.00 3.46
2648 2723 3.137533 TGCGCGATTTATCATCATGGAA 58.862 40.909 12.10 0.00 0.00 3.53
2649 2724 2.765122 TGCGCGATTTATCATCATGGA 58.235 42.857 12.10 0.00 0.00 3.41
2650 2725 3.125658 TGATGCGCGATTTATCATCATGG 59.874 43.478 12.10 0.00 39.98 3.66
2651 2726 4.086574 GTGATGCGCGATTTATCATCATG 58.913 43.478 21.86 0.00 44.56 3.07
2652 2727 3.747529 TGTGATGCGCGATTTATCATCAT 59.252 39.130 21.86 8.57 44.56 2.45
2653 2728 3.129871 TGTGATGCGCGATTTATCATCA 58.870 40.909 12.10 15.51 41.85 3.07
2654 2729 3.429881 TCTGTGATGCGCGATTTATCATC 59.570 43.478 12.10 12.81 36.70 2.92
2655 2730 3.392882 TCTGTGATGCGCGATTTATCAT 58.607 40.909 12.10 1.33 33.82 2.45
2656 2731 2.820330 TCTGTGATGCGCGATTTATCA 58.180 42.857 12.10 10.93 0.00 2.15
2657 2732 3.246226 ACTTCTGTGATGCGCGATTTATC 59.754 43.478 12.10 8.21 0.00 1.75
2658 2733 3.001634 CACTTCTGTGATGCGCGATTTAT 59.998 43.478 12.10 0.00 46.55 1.40
2659 2734 2.348362 CACTTCTGTGATGCGCGATTTA 59.652 45.455 12.10 0.00 46.55 1.40
2660 2735 1.129251 CACTTCTGTGATGCGCGATTT 59.871 47.619 12.10 0.00 46.55 2.17
2661 2736 0.723414 CACTTCTGTGATGCGCGATT 59.277 50.000 12.10 0.00 46.55 3.34
2662 2737 1.699656 GCACTTCTGTGATGCGCGAT 61.700 55.000 12.10 0.00 46.55 4.58
2663 2738 2.382746 GCACTTCTGTGATGCGCGA 61.383 57.895 12.10 0.00 46.55 5.87
2664 2739 1.904852 AAGCACTTCTGTGATGCGCG 61.905 55.000 0.00 0.00 46.55 6.86
2665 2740 0.239347 AAAGCACTTCTGTGATGCGC 59.761 50.000 0.00 0.00 46.55 6.09
2666 2741 1.463034 CGAAAGCACTTCTGTGATGCG 60.463 52.381 0.00 0.00 46.55 4.73
2667 2742 1.532868 ACGAAAGCACTTCTGTGATGC 59.467 47.619 0.00 0.00 46.55 3.91
2668 2743 2.802247 TGACGAAAGCACTTCTGTGATG 59.198 45.455 0.00 0.00 46.55 3.07
2669 2744 3.111853 TGACGAAAGCACTTCTGTGAT 57.888 42.857 0.00 0.00 46.55 3.06
2670 2745 2.595124 TGACGAAAGCACTTCTGTGA 57.405 45.000 0.00 0.00 46.55 3.58
2671 2746 2.032549 CCTTGACGAAAGCACTTCTGTG 60.033 50.000 0.00 0.00 46.37 3.66
2672 2747 2.213499 CCTTGACGAAAGCACTTCTGT 58.787 47.619 0.00 0.00 34.24 3.41
2673 2748 1.532868 CCCTTGACGAAAGCACTTCTG 59.467 52.381 0.00 0.00 34.24 3.02
2674 2749 1.141053 ACCCTTGACGAAAGCACTTCT 59.859 47.619 0.00 0.00 34.24 2.85
2675 2750 1.264288 CACCCTTGACGAAAGCACTTC 59.736 52.381 0.00 0.00 34.24 3.01
2676 2751 1.134220 TCACCCTTGACGAAAGCACTT 60.134 47.619 0.00 0.00 34.24 3.16
2677 2752 0.468226 TCACCCTTGACGAAAGCACT 59.532 50.000 0.00 0.00 34.24 4.40
2678 2753 0.586802 GTCACCCTTGACGAAAGCAC 59.413 55.000 0.00 0.00 42.86 4.40
2679 2754 3.000815 GTCACCCTTGACGAAAGCA 57.999 52.632 0.00 0.00 42.86 3.91
2687 2762 2.129146 ACGTGTCGGTCACCCTTGA 61.129 57.895 0.00 0.00 43.51 3.02
2688 2763 1.954146 CACGTGTCGGTCACCCTTG 60.954 63.158 7.58 0.00 43.51 3.61
2689 2764 2.420043 CACGTGTCGGTCACCCTT 59.580 61.111 7.58 0.00 43.51 3.95
2690 2765 3.612681 CCACGTGTCGGTCACCCT 61.613 66.667 15.65 0.00 43.51 4.34
2692 2767 3.876589 ATGCCACGTGTCGGTCACC 62.877 63.158 15.65 0.00 43.51 4.02
2693 2768 2.357034 ATGCCACGTGTCGGTCAC 60.357 61.111 15.65 0.00 43.03 3.67
2694 2769 2.048597 GATGCCACGTGTCGGTCA 60.049 61.111 15.65 4.62 0.00 4.02
2695 2770 2.813908 GGATGCCACGTGTCGGTC 60.814 66.667 15.65 4.01 0.00 4.79
2696 2771 3.621805 TGGATGCCACGTGTCGGT 61.622 61.111 15.65 0.00 0.00 4.69
2697 2772 3.118454 GTGGATGCCACGTGTCGG 61.118 66.667 15.65 0.00 44.95 4.79
2705 2780 0.687920 TTCCGTTACAGTGGATGCCA 59.312 50.000 0.00 0.00 33.42 4.92
2706 2781 1.084289 GTTCCGTTACAGTGGATGCC 58.916 55.000 0.00 0.00 33.42 4.40
2707 2782 1.463444 GTGTTCCGTTACAGTGGATGC 59.537 52.381 0.00 0.00 33.42 3.91
2708 2783 2.073816 GGTGTTCCGTTACAGTGGATG 58.926 52.381 0.00 0.00 33.42 3.51
2709 2784 2.467566 GGTGTTCCGTTACAGTGGAT 57.532 50.000 0.00 0.00 33.42 3.41
2710 2785 3.993382 GGTGTTCCGTTACAGTGGA 57.007 52.632 0.00 0.00 0.00 4.02
2721 2796 2.199236 CCGATAGCTTAACGGTGTTCC 58.801 52.381 14.70 0.00 41.47 3.62
2722 2797 2.199236 CCCGATAGCTTAACGGTGTTC 58.801 52.381 19.11 0.00 44.34 3.18
2723 2798 1.551883 ACCCGATAGCTTAACGGTGTT 59.448 47.619 19.11 5.94 44.34 3.32
2724 2799 1.135721 GACCCGATAGCTTAACGGTGT 59.864 52.381 19.11 16.56 44.34 4.16
2725 2800 1.849097 GACCCGATAGCTTAACGGTG 58.151 55.000 19.11 14.41 44.34 4.94
2726 2801 0.383231 CGACCCGATAGCTTAACGGT 59.617 55.000 19.11 9.33 44.34 4.83
2727 2802 0.318445 CCGACCCGATAGCTTAACGG 60.318 60.000 15.59 15.59 45.24 4.44
2728 2803 0.318445 CCCGACCCGATAGCTTAACG 60.318 60.000 0.00 0.00 0.00 3.18
2729 2804 0.749049 ACCCGACCCGATAGCTTAAC 59.251 55.000 0.00 0.00 0.00 2.01
2730 2805 1.488390 AACCCGACCCGATAGCTTAA 58.512 50.000 0.00 0.00 0.00 1.85
2731 2806 1.488390 AAACCCGACCCGATAGCTTA 58.512 50.000 0.00 0.00 0.00 3.09
2732 2807 0.616891 AAAACCCGACCCGATAGCTT 59.383 50.000 0.00 0.00 0.00 3.74
2733 2808 0.107848 CAAAACCCGACCCGATAGCT 60.108 55.000 0.00 0.00 0.00 3.32
2734 2809 1.093496 CCAAAACCCGACCCGATAGC 61.093 60.000 0.00 0.00 0.00 2.97
2735 2810 0.538118 TCCAAAACCCGACCCGATAG 59.462 55.000 0.00 0.00 0.00 2.08
2736 2811 1.139455 GATCCAAAACCCGACCCGATA 59.861 52.381 0.00 0.00 0.00 2.92
2737 2812 0.107361 GATCCAAAACCCGACCCGAT 60.107 55.000 0.00 0.00 0.00 4.18
2738 2813 1.297364 GATCCAAAACCCGACCCGA 59.703 57.895 0.00 0.00 0.00 5.14
2739 2814 1.747745 GGATCCAAAACCCGACCCG 60.748 63.158 6.95 0.00 0.00 5.28
2740 2815 1.747745 CGGATCCAAAACCCGACCC 60.748 63.158 13.41 0.00 45.58 4.46
2741 2816 1.297364 TCGGATCCAAAACCCGACC 59.703 57.895 13.41 0.00 46.17 4.79
2744 2819 1.944709 GGTTATCGGATCCAAAACCCG 59.055 52.381 21.41 4.80 44.22 5.28
2746 2821 1.944709 CGGGTTATCGGATCCAAAACC 59.055 52.381 22.91 22.91 39.09 3.27
2747 2822 2.635714 ACGGGTTATCGGATCCAAAAC 58.364 47.619 13.41 11.86 0.00 2.43
2748 2823 3.353370 AACGGGTTATCGGATCCAAAA 57.647 42.857 13.41 0.00 0.00 2.44
2749 2824 4.190772 GTTAACGGGTTATCGGATCCAAA 58.809 43.478 13.41 0.00 0.00 3.28
2750 2825 3.197333 TGTTAACGGGTTATCGGATCCAA 59.803 43.478 13.41 0.00 0.00 3.53
2751 2826 2.765135 TGTTAACGGGTTATCGGATCCA 59.235 45.455 13.41 0.00 0.00 3.41
2752 2827 3.387397 CTGTTAACGGGTTATCGGATCC 58.613 50.000 6.53 0.00 0.00 3.36
2753 2828 2.798847 GCTGTTAACGGGTTATCGGATC 59.201 50.000 16.13 0.00 0.00 3.36
2754 2829 2.484241 GGCTGTTAACGGGTTATCGGAT 60.484 50.000 16.13 0.00 0.00 4.18
2755 2830 1.134729 GGCTGTTAACGGGTTATCGGA 60.135 52.381 16.13 0.00 0.00 4.55
2756 2831 1.292992 GGCTGTTAACGGGTTATCGG 58.707 55.000 16.13 4.75 0.00 4.18
2757 2832 1.292992 GGGCTGTTAACGGGTTATCG 58.707 55.000 16.13 0.00 0.00 2.92
2758 2833 1.671979 GGGGCTGTTAACGGGTTATC 58.328 55.000 16.13 0.00 0.00 1.75
2759 2834 0.107557 CGGGGCTGTTAACGGGTTAT 60.108 55.000 16.13 0.00 0.00 1.89
2760 2835 1.190833 TCGGGGCTGTTAACGGGTTA 61.191 55.000 16.13 0.00 0.00 2.85
2761 2836 2.032987 CGGGGCTGTTAACGGGTT 59.967 61.111 16.13 0.00 0.00 4.11
2762 2837 2.924101 TCGGGGCTGTTAACGGGT 60.924 61.111 16.13 0.00 0.00 5.28
2763 2838 2.435410 GTCGGGGCTGTTAACGGG 60.435 66.667 16.13 5.39 0.00 5.28
2764 2839 2.435410 GGTCGGGGCTGTTAACGG 60.435 66.667 10.24 10.24 0.00 4.44
2765 2840 0.675522 ATTGGTCGGGGCTGTTAACG 60.676 55.000 0.26 0.00 0.00 3.18
2766 2841 0.808755 CATTGGTCGGGGCTGTTAAC 59.191 55.000 0.00 0.00 0.00 2.01
2767 2842 0.322997 CCATTGGTCGGGGCTGTTAA 60.323 55.000 0.00 0.00 0.00 2.01
2768 2843 1.301623 CCATTGGTCGGGGCTGTTA 59.698 57.895 0.00 0.00 0.00 2.41
2769 2844 2.035626 CCATTGGTCGGGGCTGTT 59.964 61.111 0.00 0.00 0.00 3.16
2770 2845 4.047125 CCCATTGGTCGGGGCTGT 62.047 66.667 1.20 0.00 40.35 4.40
2775 2850 1.111277 GAAAATCCCCATTGGTCGGG 58.889 55.000 1.20 0.00 44.07 5.14
2776 2851 1.111277 GGAAAATCCCCATTGGTCGG 58.889 55.000 1.20 0.00 34.77 4.79
2777 2852 1.476488 GTGGAAAATCCCCATTGGTCG 59.524 52.381 1.20 0.00 35.03 4.79
2778 2853 1.476488 CGTGGAAAATCCCCATTGGTC 59.524 52.381 1.20 0.00 35.03 4.02
2779 2854 1.203125 ACGTGGAAAATCCCCATTGGT 60.203 47.619 1.20 0.00 35.03 3.67
2780 2855 1.204467 CACGTGGAAAATCCCCATTGG 59.796 52.381 7.95 0.00 35.03 3.16
2781 2856 1.892474 ACACGTGGAAAATCCCCATTG 59.108 47.619 21.57 0.00 35.03 2.82
2782 2857 2.302587 ACACGTGGAAAATCCCCATT 57.697 45.000 21.57 0.00 35.03 3.16
2783 2858 3.443145 TTACACGTGGAAAATCCCCAT 57.557 42.857 21.57 0.00 35.03 4.00
2784 2859 2.953284 TTACACGTGGAAAATCCCCA 57.047 45.000 21.57 0.00 35.03 4.96
2785 2860 4.218852 TGATTTTACACGTGGAAAATCCCC 59.781 41.667 45.56 34.10 45.35 4.81
2786 2861 5.379732 TGATTTTACACGTGGAAAATCCC 57.620 39.130 45.56 34.60 45.35 3.85
2787 2862 6.616947 TGATGATTTTACACGTGGAAAATCC 58.383 36.000 45.56 37.51 45.35 3.01
2788 2863 8.586273 CAATGATGATTTTACACGTGGAAAATC 58.414 33.333 44.38 44.38 45.80 2.17
2789 2864 7.545265 CCAATGATGATTTTACACGTGGAAAAT 59.455 33.333 39.00 39.00 37.83 1.82
2790 2865 6.865726 CCAATGATGATTTTACACGTGGAAAA 59.134 34.615 34.26 34.26 0.00 2.29
2791 2866 6.385843 CCAATGATGATTTTACACGTGGAAA 58.614 36.000 21.99 21.99 0.00 3.13
2792 2867 5.621104 GCCAATGATGATTTTACACGTGGAA 60.621 40.000 21.57 16.11 0.00 3.53
2793 2868 4.142491 GCCAATGATGATTTTACACGTGGA 60.142 41.667 21.57 9.00 0.00 4.02
2794 2869 4.104776 GCCAATGATGATTTTACACGTGG 58.895 43.478 21.57 1.66 0.00 4.94
2795 2870 4.985413 AGCCAATGATGATTTTACACGTG 58.015 39.130 15.48 15.48 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.