Multiple sequence alignment - TraesCS2B01G113400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G113400 chr2B 100.000 3854 0 0 1 3854 76911507 76907654 0.000000e+00 7118
1 TraesCS2B01G113400 chr2B 92.657 2356 125 15 979 3314 83565951 83563624 0.000000e+00 3349
2 TraesCS2B01G113400 chr2B 77.223 821 145 27 1651 2459 625930842 625930052 3.530000e-120 442
3 TraesCS2B01G113400 chr3B 96.244 1624 40 6 1710 3315 571749286 571747666 0.000000e+00 2641
4 TraesCS2B01G113400 chr3B 82.099 648 78 27 2700 3321 525630679 525630044 1.590000e-143 520
5 TraesCS2B01G113400 chr2A 92.653 1538 82 7 1794 3315 52100015 52101537 0.000000e+00 2185
6 TraesCS2B01G113400 chr2A 93.252 489 29 3 440 924 51555361 51554873 0.000000e+00 717
7 TraesCS2B01G113400 chr2A 91.608 429 22 9 3313 3731 51554887 51554463 7.180000e-162 580
8 TraesCS2B01G113400 chr2A 87.147 389 19 10 1 361 51555953 51555568 2.770000e-111 412
9 TraesCS2B01G113400 chr2A 99.038 104 1 0 3751 3854 763918841 763918738 1.830000e-43 187
10 TraesCS2B01G113400 chr2A 99.000 100 1 0 3755 3854 44026003 44025904 3.060000e-41 180
11 TraesCS2B01G113400 chr1A 82.531 1620 223 28 1731 3316 497782134 497780541 0.000000e+00 1369
12 TraesCS2B01G113400 chr1A 75.540 417 82 14 979 1380 504727238 504727649 1.830000e-43 187
13 TraesCS2B01G113400 chr1A 74.661 442 86 19 979 1402 26199819 26199386 5.120000e-39 172
14 TraesCS2B01G113400 chr1A 74.185 399 89 11 2348 2736 119056108 119055714 1.850000e-33 154
15 TraesCS2B01G113400 chr6A 82.469 1620 222 34 1731 3315 169894883 169893291 0.000000e+00 1362
16 TraesCS2B01G113400 chr6A 81.747 641 80 25 2700 3314 569974175 569973546 5.750000e-138 501
17 TraesCS2B01G113400 chr6B 81.999 1611 226 31 1737 3312 192737075 192735494 0.000000e+00 1310
18 TraesCS2B01G113400 chr6B 82.271 643 79 20 2700 3317 55346649 55347281 1.230000e-144 523
19 TraesCS2B01G113400 chr6B 97.115 104 3 0 3751 3854 13350 13453 3.960000e-40 176
20 TraesCS2B01G113400 chr2D 82.265 1342 172 30 2009 3314 636591875 636590564 0.000000e+00 1099
21 TraesCS2B01G113400 chr2D 94.251 487 20 5 440 924 49396221 49395741 0.000000e+00 737
22 TraesCS2B01G113400 chr2D 93.647 425 24 2 3313 3734 49395754 49395330 1.950000e-177 632
23 TraesCS2B01G113400 chr2D 85.085 295 29 6 76 361 49396660 49396372 1.750000e-73 287
24 TraesCS2B01G113400 chr2D 84.647 241 20 9 126 361 49386142 49385914 1.390000e-54 224
25 TraesCS2B01G113400 chr2D 89.349 169 17 1 3390 3557 49392451 49392283 1.080000e-50 211
26 TraesCS2B01G113400 chr2D 74.443 583 97 29 2705 3262 587005966 587005411 1.820000e-48 204
27 TraesCS2B01G113400 chr2D 98.058 103 2 0 3752 3854 6112877 6112979 3.060000e-41 180
28 TraesCS2B01G113400 chr2D 92.000 100 6 2 1 98 49396970 49396871 5.190000e-29 139
29 TraesCS2B01G113400 chr7B 81.198 1319 204 20 1855 3146 517117871 517116570 0.000000e+00 1022
30 TraesCS2B01G113400 chr7B 80.217 460 57 15 2637 3076 434360065 434359620 8.040000e-82 315
31 TraesCS2B01G113400 chr7B 98.095 105 2 0 3750 3854 646607780 646607676 2.360000e-42 183
32 TraesCS2B01G113400 chr5B 87.136 894 86 10 2216 3099 638780041 638780915 0.000000e+00 987
33 TraesCS2B01G113400 chr5B 77.356 817 149 23 1651 2458 345520205 345520994 5.870000e-123 451
34 TraesCS2B01G113400 chr5B 76.417 441 80 18 979 1402 429779026 429779459 2.330000e-52 217
35 TraesCS2B01G113400 chr5B 94.690 113 5 1 3742 3854 576054361 576054472 1.420000e-39 174
36 TraesCS2B01G113400 chr1B 82.371 641 77 21 2700 3314 106769800 106769170 3.410000e-145 525
37 TraesCS2B01G113400 chr1B 74.180 701 148 24 1874 2559 11631632 11632314 1.060000e-65 261
38 TraesCS2B01G113400 chr1B 81.212 330 57 4 979 1304 653222532 653222860 1.060000e-65 261
39 TraesCS2B01G113400 chr1B 80.896 335 56 7 979 1307 592047632 592047300 1.370000e-64 257
40 TraesCS2B01G113400 chr1B 72.115 624 116 37 2113 2716 171233601 171233016 6.720000e-28 135
41 TraesCS2B01G113400 chr5A 78.511 712 128 18 1651 2350 601602460 601601762 9.830000e-121 444
42 TraesCS2B01G113400 chr5A 81.250 336 54 8 979 1307 601602973 601602640 2.950000e-66 263
43 TraesCS2B01G113400 chr3D 75.362 621 102 31 2702 3298 388345016 388345609 6.390000e-63 252
44 TraesCS2B01G113400 chr3A 80.909 330 48 13 987 1307 571907985 571907662 2.970000e-61 246
45 TraesCS2B01G113400 chr3A 93.443 122 6 2 3733 3854 77482931 77482812 3.060000e-41 180
46 TraesCS2B01G113400 chr3A 74.545 440 90 16 979 1402 496983197 496982764 5.120000e-39 172
47 TraesCS2B01G113400 chr4B 76.136 440 83 16 979 1402 4968630 4968197 1.080000e-50 211
48 TraesCS2B01G113400 chr4B 73.529 442 91 19 979 1402 497236599 497236166 1.120000e-30 145
49 TraesCS2B01G113400 chr6D 76.000 400 94 2 2350 2748 451905003 451904605 5.050000e-49 206
50 TraesCS2B01G113400 chr5D 74.760 416 93 10 2360 2770 237461189 237461597 3.960000e-40 176
51 TraesCS2B01G113400 chr7A 94.690 113 4 2 3744 3854 191825600 191825712 1.420000e-39 174
52 TraesCS2B01G113400 chr4D 98.000 100 2 0 3755 3854 163886269 163886170 1.420000e-39 174
53 TraesCS2B01G113400 chr4A 74.318 440 91 16 979 1402 149101289 149101722 2.380000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G113400 chr2B 76907654 76911507 3853 True 7118.000000 7118 100.0000 1 3854 1 chr2B.!!$R1 3853
1 TraesCS2B01G113400 chr2B 83563624 83565951 2327 True 3349.000000 3349 92.6570 979 3314 1 chr2B.!!$R2 2335
2 TraesCS2B01G113400 chr2B 625930052 625930842 790 True 442.000000 442 77.2230 1651 2459 1 chr2B.!!$R3 808
3 TraesCS2B01G113400 chr3B 571747666 571749286 1620 True 2641.000000 2641 96.2440 1710 3315 1 chr3B.!!$R2 1605
4 TraesCS2B01G113400 chr3B 525630044 525630679 635 True 520.000000 520 82.0990 2700 3321 1 chr3B.!!$R1 621
5 TraesCS2B01G113400 chr2A 52100015 52101537 1522 False 2185.000000 2185 92.6530 1794 3315 1 chr2A.!!$F1 1521
6 TraesCS2B01G113400 chr2A 51554463 51555953 1490 True 569.666667 717 90.6690 1 3731 3 chr2A.!!$R3 3730
7 TraesCS2B01G113400 chr1A 497780541 497782134 1593 True 1369.000000 1369 82.5310 1731 3316 1 chr1A.!!$R3 1585
8 TraesCS2B01G113400 chr6A 169893291 169894883 1592 True 1362.000000 1362 82.4690 1731 3315 1 chr6A.!!$R1 1584
9 TraesCS2B01G113400 chr6A 569973546 569974175 629 True 501.000000 501 81.7470 2700 3314 1 chr6A.!!$R2 614
10 TraesCS2B01G113400 chr6B 192735494 192737075 1581 True 1310.000000 1310 81.9990 1737 3312 1 chr6B.!!$R1 1575
11 TraesCS2B01G113400 chr6B 55346649 55347281 632 False 523.000000 523 82.2710 2700 3317 1 chr6B.!!$F2 617
12 TraesCS2B01G113400 chr2D 636590564 636591875 1311 True 1099.000000 1099 82.2650 2009 3314 1 chr2D.!!$R3 1305
13 TraesCS2B01G113400 chr2D 49392283 49396970 4687 True 401.200000 737 90.8664 1 3734 5 chr2D.!!$R4 3733
14 TraesCS2B01G113400 chr2D 587005411 587005966 555 True 204.000000 204 74.4430 2705 3262 1 chr2D.!!$R2 557
15 TraesCS2B01G113400 chr7B 517116570 517117871 1301 True 1022.000000 1022 81.1980 1855 3146 1 chr7B.!!$R2 1291
16 TraesCS2B01G113400 chr5B 638780041 638780915 874 False 987.000000 987 87.1360 2216 3099 1 chr5B.!!$F4 883
17 TraesCS2B01G113400 chr5B 345520205 345520994 789 False 451.000000 451 77.3560 1651 2458 1 chr5B.!!$F1 807
18 TraesCS2B01G113400 chr1B 106769170 106769800 630 True 525.000000 525 82.3710 2700 3314 1 chr1B.!!$R1 614
19 TraesCS2B01G113400 chr1B 11631632 11632314 682 False 261.000000 261 74.1800 1874 2559 1 chr1B.!!$F1 685
20 TraesCS2B01G113400 chr5A 601601762 601602973 1211 True 353.500000 444 79.8805 979 2350 2 chr5A.!!$R1 1371
21 TraesCS2B01G113400 chr3D 388345016 388345609 593 False 252.000000 252 75.3620 2702 3298 1 chr3D.!!$F1 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
958 1363 0.106819 AGGCTCATCAGGAACATGGC 60.107 55.0 0.0 0.0 0.0 4.40 F
1962 2381 0.456995 GTGCGGCTGAGTGTAGAGAC 60.457 60.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2503 4772 0.681564 AGAACCGGAGACTCGAGCAT 60.682 55.0 13.61 0.0 0.0 3.79 R
3796 6979 0.033504 ATTCCGGGTCGATGAATCCG 59.966 55.0 0.00 0.0 41.9 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 75 8.747666 CAAGAATTGGAAAACAAAATTGCATTG 58.252 29.630 0.00 0.00 43.94 2.82
116 353 9.753674 AGATTTTCCAACCATTCTCTTGTATAA 57.246 29.630 0.00 0.00 0.00 0.98
296 567 2.880890 CAAGTGGACAAGCTGCTACTTT 59.119 45.455 11.07 0.00 0.00 2.66
297 568 2.498167 AGTGGACAAGCTGCTACTTTG 58.502 47.619 0.90 0.00 0.00 2.77
298 569 1.068954 GTGGACAAGCTGCTACTTTGC 60.069 52.381 0.90 0.00 0.00 3.68
361 632 3.181484 GCATGCATGGAAATTGTAGCAGA 60.181 43.478 27.34 0.00 35.26 4.26
363 634 2.424601 TGCATGGAAATTGTAGCAGAGC 59.575 45.455 0.00 0.00 0.00 4.09
364 635 2.424601 GCATGGAAATTGTAGCAGAGCA 59.575 45.455 0.00 0.00 0.00 4.26
365 636 3.067742 GCATGGAAATTGTAGCAGAGCAT 59.932 43.478 0.00 0.00 0.00 3.79
366 637 4.792057 GCATGGAAATTGTAGCAGAGCATC 60.792 45.833 0.00 0.00 0.00 3.91
389 769 9.605275 CATCTTGAACTCATGATACTCCTAAAA 57.395 33.333 0.00 0.00 38.28 1.52
390 770 9.606631 ATCTTGAACTCATGATACTCCTAAAAC 57.393 33.333 0.00 0.00 38.48 2.43
393 773 6.818644 TGAACTCATGATACTCCTAAAACTGC 59.181 38.462 0.00 0.00 0.00 4.40
394 774 6.552445 ACTCATGATACTCCTAAAACTGCT 57.448 37.500 0.00 0.00 0.00 4.24
395 775 6.344500 ACTCATGATACTCCTAAAACTGCTG 58.656 40.000 0.00 0.00 0.00 4.41
396 776 6.155221 ACTCATGATACTCCTAAAACTGCTGA 59.845 38.462 0.00 0.00 0.00 4.26
399 779 8.049117 TCATGATACTCCTAAAACTGCTGATTT 58.951 33.333 0.00 0.42 0.00 2.17
412 792 9.686683 AAAACTGCTGATTTATATAGAGTTGGT 57.313 29.630 0.00 0.00 0.00 3.67
413 793 8.668510 AACTGCTGATTTATATAGAGTTGGTG 57.331 34.615 0.00 0.00 0.00 4.17
424 804 7.772332 ATATAGAGTTGGTGAAGTTTTAGCG 57.228 36.000 0.00 0.00 0.00 4.26
425 805 2.548480 AGAGTTGGTGAAGTTTTAGCGC 59.452 45.455 0.00 0.00 0.00 5.92
426 806 2.548480 GAGTTGGTGAAGTTTTAGCGCT 59.452 45.455 17.26 17.26 0.00 5.92
427 807 2.548480 AGTTGGTGAAGTTTTAGCGCTC 59.452 45.455 16.34 0.00 0.00 5.03
429 809 2.143122 TGGTGAAGTTTTAGCGCTCTG 58.857 47.619 16.34 0.00 0.00 3.35
432 812 2.157863 GTGAAGTTTTAGCGCTCTGTCC 59.842 50.000 16.34 0.00 0.00 4.02
434 814 3.257375 TGAAGTTTTAGCGCTCTGTCCTA 59.743 43.478 16.34 0.00 0.00 2.94
435 815 3.233684 AGTTTTAGCGCTCTGTCCTAC 57.766 47.619 16.34 3.83 0.00 3.18
437 817 4.015084 AGTTTTAGCGCTCTGTCCTACTA 58.985 43.478 16.34 0.00 0.00 1.82
438 818 4.096682 AGTTTTAGCGCTCTGTCCTACTAG 59.903 45.833 16.34 0.00 0.00 2.57
676 1077 4.545678 AGACTGCTCAGGAGATATTGAGT 58.454 43.478 0.00 0.00 0.00 3.41
768 1169 7.170320 GTGTTGCATGAGAGTGATTTTTCAAAT 59.830 33.333 0.00 0.00 0.00 2.32
927 1332 6.127810 TGCTGTAAATACTACTGTACGAGG 57.872 41.667 0.00 0.00 0.00 4.63
928 1333 4.974888 GCTGTAAATACTACTGTACGAGGC 59.025 45.833 0.00 0.00 0.00 4.70
929 1334 5.221009 GCTGTAAATACTACTGTACGAGGCT 60.221 44.000 0.00 0.00 0.00 4.58
930 1335 6.369059 TGTAAATACTACTGTACGAGGCTC 57.631 41.667 3.87 3.87 0.00 4.70
933 1338 1.461559 ACTACTGTACGAGGCTCCAC 58.538 55.000 9.32 7.91 0.00 4.02
935 1340 1.671845 CTACTGTACGAGGCTCCACTC 59.328 57.143 9.32 0.00 0.00 3.51
936 1341 0.251209 ACTGTACGAGGCTCCACTCA 60.251 55.000 9.32 2.84 37.34 3.41
937 1342 1.107114 CTGTACGAGGCTCCACTCAT 58.893 55.000 9.32 0.00 37.34 2.90
938 1343 2.298610 CTGTACGAGGCTCCACTCATA 58.701 52.381 9.32 0.00 37.34 2.15
939 1344 2.688446 CTGTACGAGGCTCCACTCATAA 59.312 50.000 9.32 0.00 37.34 1.90
940 1345 2.688446 TGTACGAGGCTCCACTCATAAG 59.312 50.000 9.32 0.00 37.34 1.73
941 1346 1.115467 ACGAGGCTCCACTCATAAGG 58.885 55.000 9.32 0.00 37.34 2.69
942 1347 0.249657 CGAGGCTCCACTCATAAGGC 60.250 60.000 9.32 0.00 37.34 4.35
943 1348 3.331252 AGGCTCCACTCATAAGGCT 57.669 52.632 0.00 0.00 40.71 4.58
944 1349 1.127343 AGGCTCCACTCATAAGGCTC 58.873 55.000 0.00 0.00 41.60 4.70
945 1350 0.833287 GGCTCCACTCATAAGGCTCA 59.167 55.000 0.00 0.00 33.16 4.26
946 1351 1.419387 GGCTCCACTCATAAGGCTCAT 59.581 52.381 0.00 0.00 33.16 2.90
947 1352 2.549778 GGCTCCACTCATAAGGCTCATC 60.550 54.545 0.00 0.00 33.16 2.92
948 1353 2.103771 GCTCCACTCATAAGGCTCATCA 59.896 50.000 0.00 0.00 0.00 3.07
949 1354 3.803021 GCTCCACTCATAAGGCTCATCAG 60.803 52.174 0.00 0.00 0.00 2.90
950 1355 2.702478 TCCACTCATAAGGCTCATCAGG 59.298 50.000 0.00 0.00 0.00 3.86
951 1356 2.702478 CCACTCATAAGGCTCATCAGGA 59.298 50.000 0.00 0.00 0.00 3.86
952 1357 3.135348 CCACTCATAAGGCTCATCAGGAA 59.865 47.826 0.00 0.00 0.00 3.36
955 1360 4.411540 ACTCATAAGGCTCATCAGGAACAT 59.588 41.667 0.00 0.00 0.00 2.71
956 1361 4.711399 TCATAAGGCTCATCAGGAACATG 58.289 43.478 0.00 0.00 0.00 3.21
957 1362 2.431954 AAGGCTCATCAGGAACATGG 57.568 50.000 0.00 0.00 0.00 3.66
958 1363 0.106819 AGGCTCATCAGGAACATGGC 60.107 55.000 0.00 0.00 0.00 4.40
959 1364 1.105759 GGCTCATCAGGAACATGGCC 61.106 60.000 0.00 0.00 33.33 5.36
961 1366 1.141657 GCTCATCAGGAACATGGCCTA 59.858 52.381 3.32 0.00 33.51 3.93
962 1367 2.421952 GCTCATCAGGAACATGGCCTAA 60.422 50.000 3.32 0.00 33.51 2.69
963 1368 3.889815 CTCATCAGGAACATGGCCTAAA 58.110 45.455 3.32 2.28 33.51 1.85
964 1369 4.272489 CTCATCAGGAACATGGCCTAAAA 58.728 43.478 3.32 0.13 33.51 1.52
965 1370 4.272489 TCATCAGGAACATGGCCTAAAAG 58.728 43.478 3.32 0.00 33.51 2.27
966 1371 3.806949 TCAGGAACATGGCCTAAAAGT 57.193 42.857 3.32 0.00 33.51 2.66
967 1372 3.420893 TCAGGAACATGGCCTAAAAGTG 58.579 45.455 3.32 0.00 33.51 3.16
968 1373 3.073798 TCAGGAACATGGCCTAAAAGTGA 59.926 43.478 3.32 0.00 33.51 3.41
969 1374 3.191371 CAGGAACATGGCCTAAAAGTGAC 59.809 47.826 3.32 0.00 33.51 3.67
970 1375 3.074538 AGGAACATGGCCTAAAAGTGACT 59.925 43.478 3.32 0.00 32.92 3.41
971 1376 4.288626 AGGAACATGGCCTAAAAGTGACTA 59.711 41.667 3.32 0.00 32.92 2.59
972 1377 4.636206 GGAACATGGCCTAAAAGTGACTAG 59.364 45.833 3.32 0.00 0.00 2.57
973 1378 4.910458 ACATGGCCTAAAAGTGACTAGT 57.090 40.909 3.32 0.00 0.00 2.57
974 1379 4.579869 ACATGGCCTAAAAGTGACTAGTG 58.420 43.478 3.32 0.00 0.00 2.74
975 1380 4.041691 ACATGGCCTAAAAGTGACTAGTGT 59.958 41.667 3.32 0.00 0.00 3.55
976 1381 4.699925 TGGCCTAAAAGTGACTAGTGTT 57.300 40.909 3.32 0.00 0.00 3.32
977 1382 5.811796 TGGCCTAAAAGTGACTAGTGTTA 57.188 39.130 3.32 0.00 0.00 2.41
984 1389 3.132629 AGTGACTAGTGTTATCGCGTG 57.867 47.619 5.77 0.00 0.00 5.34
1048 1453 4.785453 CTTGCTCCGGCCACTCCC 62.785 72.222 2.24 0.00 37.74 4.30
1080 1485 4.554036 GGGATCCAGCCACCTCGC 62.554 72.222 15.23 0.00 0.00 5.03
1356 1766 2.501610 GGCCACTCCGTCCAGATC 59.498 66.667 0.00 0.00 0.00 2.75
1535 1945 2.045926 CCCCGTTCCTGGCTTGAG 60.046 66.667 0.00 0.00 0.00 3.02
1572 1982 1.658686 CTAGGACGCTCGGTGCTTCT 61.659 60.000 8.18 2.41 46.19 2.85
1576 1986 3.181967 CGCTCGGTGCTTCTTCGG 61.182 66.667 0.23 0.00 40.11 4.30
1581 1991 2.665603 GGTGCTTCTTCGGCCTCT 59.334 61.111 0.00 0.00 0.00 3.69
1591 2001 4.410400 CGGCCTCTGACCAACCCC 62.410 72.222 0.00 0.00 0.00 4.95
1689 2099 2.903357 CCTGAGTCATGGTCCCCG 59.097 66.667 0.00 0.00 0.00 5.73
1753 2163 0.464036 CCCTATGACACCGCTTGCTA 59.536 55.000 0.00 0.00 0.00 3.49
1962 2381 0.456995 GTGCGGCTGAGTGTAGAGAC 60.457 60.000 0.00 0.00 0.00 3.36
2016 2435 2.733218 CGTGCACGTGGATGTCGT 60.733 61.111 30.50 0.00 42.33 4.34
2254 4323 1.237285 GCTGCAAGGTTGGATGACGT 61.237 55.000 0.00 0.00 0.00 4.34
2270 4339 1.971695 CGTGGGTTGGGAGCTTTCC 60.972 63.158 0.00 0.00 0.00 3.13
2594 4864 4.704833 TGTGGAGCGCTTGGAGGC 62.705 66.667 13.26 0.00 0.00 4.70
2911 6051 3.815401 ACAGCTTGCTCAAACGTTTAGAT 59.185 39.130 14.20 2.73 0.00 1.98
2920 6060 1.935933 AACGTTTAGATGCGGCTAGG 58.064 50.000 0.00 0.00 0.00 3.02
3079 6231 1.529948 TGGTCCTCGTGGTCTTCGT 60.530 57.895 2.99 0.00 34.23 3.85
3340 6523 7.875316 ACTACTGTACATCATATCATTTCGC 57.125 36.000 0.00 0.00 0.00 4.70
3341 6524 7.661968 ACTACTGTACATCATATCATTTCGCT 58.338 34.615 0.00 0.00 0.00 4.93
3342 6525 8.793592 ACTACTGTACATCATATCATTTCGCTA 58.206 33.333 0.00 0.00 0.00 4.26
3343 6526 9.794685 CTACTGTACATCATATCATTTCGCTAT 57.205 33.333 0.00 0.00 0.00 2.97
3347 6530 9.087424 TGTACATCATATCATTTCGCTATAAGC 57.913 33.333 0.00 0.00 38.02 3.09
3348 6531 9.087424 GTACATCATATCATTTCGCTATAAGCA 57.913 33.333 0.00 0.00 42.58 3.91
3349 6532 8.552083 ACATCATATCATTTCGCTATAAGCAA 57.448 30.769 0.00 0.00 42.58 3.91
3350 6533 8.663025 ACATCATATCATTTCGCTATAAGCAAG 58.337 33.333 0.00 0.00 42.58 4.01
3351 6534 7.065216 TCATATCATTTCGCTATAAGCAAGC 57.935 36.000 0.00 0.00 42.58 4.01
3352 6535 6.875726 TCATATCATTTCGCTATAAGCAAGCT 59.124 34.615 0.00 0.00 42.58 3.74
3353 6536 7.388776 TCATATCATTTCGCTATAAGCAAGCTT 59.611 33.333 12.42 12.42 42.58 3.74
3354 6537 5.818136 TCATTTCGCTATAAGCAAGCTTT 57.182 34.783 13.06 4.00 42.58 3.51
3355 6538 5.810525 TCATTTCGCTATAAGCAAGCTTTC 58.189 37.500 13.06 0.00 42.58 2.62
3356 6539 5.353956 TCATTTCGCTATAAGCAAGCTTTCA 59.646 36.000 13.06 0.00 42.58 2.69
3357 6540 5.621197 TTTCGCTATAAGCAAGCTTTCAA 57.379 34.783 13.06 0.00 42.58 2.69
3358 6541 4.600012 TCGCTATAAGCAAGCTTTCAAC 57.400 40.909 13.06 0.70 42.58 3.18
3359 6542 4.253685 TCGCTATAAGCAAGCTTTCAACT 58.746 39.130 13.06 0.00 42.58 3.16
3360 6543 4.093408 TCGCTATAAGCAAGCTTTCAACTG 59.907 41.667 13.06 0.22 42.58 3.16
3361 6544 4.093408 CGCTATAAGCAAGCTTTCAACTGA 59.907 41.667 13.06 0.00 42.58 3.41
3362 6545 5.220739 CGCTATAAGCAAGCTTTCAACTGAT 60.221 40.000 13.06 1.24 42.58 2.90
3363 6546 6.197981 GCTATAAGCAAGCTTTCAACTGATC 58.802 40.000 13.06 0.00 41.89 2.92
3364 6547 6.038050 GCTATAAGCAAGCTTTCAACTGATCT 59.962 38.462 13.06 0.00 41.89 2.75
3365 6548 4.500603 AAGCAAGCTTTCAACTGATCTG 57.499 40.909 0.00 0.00 31.29 2.90
3366 6549 2.818432 AGCAAGCTTTCAACTGATCTGG 59.182 45.455 0.00 0.00 0.00 3.86
3367 6550 2.670509 GCAAGCTTTCAACTGATCTGGC 60.671 50.000 0.00 0.00 0.00 4.85
3368 6551 2.818432 CAAGCTTTCAACTGATCTGGCT 59.182 45.455 0.00 0.00 0.00 4.75
3369 6552 2.709213 AGCTTTCAACTGATCTGGCTC 58.291 47.619 4.49 0.00 0.00 4.70
3370 6553 1.742268 GCTTTCAACTGATCTGGCTCC 59.258 52.381 4.49 0.00 0.00 4.70
3371 6554 2.877300 GCTTTCAACTGATCTGGCTCCA 60.877 50.000 4.49 0.00 0.00 3.86
3372 6555 3.618351 CTTTCAACTGATCTGGCTCCAT 58.382 45.455 4.49 0.00 0.00 3.41
3373 6556 2.704464 TCAACTGATCTGGCTCCATG 57.296 50.000 4.49 0.00 0.00 3.66
3374 6557 1.211212 TCAACTGATCTGGCTCCATGG 59.789 52.381 4.97 4.97 0.00 3.66
3375 6558 0.549950 AACTGATCTGGCTCCATGGG 59.450 55.000 13.02 3.69 0.00 4.00
3376 6559 1.351080 ACTGATCTGGCTCCATGGGG 61.351 60.000 13.02 10.39 0.00 4.96
3377 6560 1.308128 TGATCTGGCTCCATGGGGT 60.308 57.895 14.66 0.00 34.93 4.95
3378 6561 0.920763 TGATCTGGCTCCATGGGGTT 60.921 55.000 14.66 0.00 34.93 4.11
3379 6562 0.259938 GATCTGGCTCCATGGGGTTT 59.740 55.000 14.66 0.00 34.93 3.27
3380 6563 0.712380 ATCTGGCTCCATGGGGTTTT 59.288 50.000 14.66 0.00 34.93 2.43
3381 6564 0.251742 TCTGGCTCCATGGGGTTTTG 60.252 55.000 14.66 1.57 34.93 2.44
3382 6565 1.891722 CTGGCTCCATGGGGTTTTGC 61.892 60.000 14.66 7.71 34.93 3.68
3383 6566 2.659063 GGCTCCATGGGGTTTTGCC 61.659 63.158 14.66 12.75 34.93 4.52
3384 6567 1.610379 GCTCCATGGGGTTTTGCCT 60.610 57.895 14.66 0.00 37.43 4.75
3385 6568 1.194121 GCTCCATGGGGTTTTGCCTT 61.194 55.000 14.66 0.00 37.43 4.35
3386 6569 0.609662 CTCCATGGGGTTTTGCCTTG 59.390 55.000 13.02 0.00 37.43 3.61
3387 6570 0.835543 TCCATGGGGTTTTGCCTTGG 60.836 55.000 13.02 0.00 37.43 3.61
3388 6571 0.835543 CCATGGGGTTTTGCCTTGGA 60.836 55.000 2.85 0.00 35.31 3.53
3389 6572 1.278537 CATGGGGTTTTGCCTTGGAT 58.721 50.000 0.00 0.00 37.43 3.41
3390 6573 1.065998 CATGGGGTTTTGCCTTGGATG 60.066 52.381 0.00 0.00 37.43 3.51
3391 6574 0.835543 TGGGGTTTTGCCTTGGATGG 60.836 55.000 0.00 0.00 37.43 3.51
3392 6575 0.544120 GGGGTTTTGCCTTGGATGGA 60.544 55.000 0.00 0.00 37.43 3.41
3393 6576 0.608130 GGGTTTTGCCTTGGATGGAC 59.392 55.000 0.00 0.00 37.43 4.02
3394 6577 1.337118 GGTTTTGCCTTGGATGGACA 58.663 50.000 0.00 0.00 0.00 4.02
3395 6578 1.273327 GGTTTTGCCTTGGATGGACAG 59.727 52.381 0.00 0.00 0.00 3.51
3396 6579 2.238521 GTTTTGCCTTGGATGGACAGA 58.761 47.619 0.00 0.00 0.00 3.41
3397 6580 2.627699 GTTTTGCCTTGGATGGACAGAA 59.372 45.455 0.00 0.00 0.00 3.02
3398 6581 1.909700 TTGCCTTGGATGGACAGAAC 58.090 50.000 0.00 0.00 0.00 3.01
3399 6582 0.038166 TGCCTTGGATGGACAGAACC 59.962 55.000 0.00 0.00 0.00 3.62
3400 6583 0.038166 GCCTTGGATGGACAGAACCA 59.962 55.000 0.00 0.00 44.41 3.67
3401 6584 1.952367 GCCTTGGATGGACAGAACCAG 60.952 57.143 0.00 0.00 43.49 4.00
3402 6585 1.340405 CCTTGGATGGACAGAACCAGG 60.340 57.143 0.00 0.00 43.49 4.45
3403 6586 0.038166 TTGGATGGACAGAACCAGGC 59.962 55.000 0.00 0.00 43.49 4.85
3404 6587 1.077429 GGATGGACAGAACCAGGCC 60.077 63.158 0.00 0.00 43.49 5.19
3405 6588 1.685224 GATGGACAGAACCAGGCCA 59.315 57.895 5.01 0.00 43.49 5.36
3406 6589 0.257039 GATGGACAGAACCAGGCCAT 59.743 55.000 5.01 0.00 43.49 4.40
3407 6590 0.033796 ATGGACAGAACCAGGCCATG 60.034 55.000 5.01 0.00 43.49 3.66
3420 6603 4.100084 CCATGGCGAGGCAGGTGA 62.100 66.667 0.00 0.00 0.00 4.02
3421 6604 2.046023 CATGGCGAGGCAGGTGAA 60.046 61.111 5.43 0.00 0.00 3.18
3422 6605 2.045926 ATGGCGAGGCAGGTGAAC 60.046 61.111 5.43 0.00 0.00 3.18
3423 6606 3.958147 ATGGCGAGGCAGGTGAACG 62.958 63.158 5.43 0.00 0.00 3.95
3433 6616 2.992476 AGGTGAACGCCCTGATACT 58.008 52.632 0.48 0.00 0.00 2.12
3434 6617 0.537188 AGGTGAACGCCCTGATACTG 59.463 55.000 0.48 0.00 0.00 2.74
3435 6618 0.249398 GGTGAACGCCCTGATACTGT 59.751 55.000 0.00 0.00 0.00 3.55
3436 6619 1.641577 GTGAACGCCCTGATACTGTC 58.358 55.000 0.00 0.00 0.00 3.51
3437 6620 0.172578 TGAACGCCCTGATACTGTCG 59.827 55.000 0.00 0.00 0.00 4.35
3438 6621 0.172803 GAACGCCCTGATACTGTCGT 59.827 55.000 0.00 0.00 0.00 4.34
3439 6622 0.108804 AACGCCCTGATACTGTCGTG 60.109 55.000 0.00 0.00 0.00 4.35
3440 6623 1.226974 CGCCCTGATACTGTCGTGG 60.227 63.158 0.00 0.00 0.00 4.94
3441 6624 1.663379 CGCCCTGATACTGTCGTGGA 61.663 60.000 0.00 0.00 0.00 4.02
3442 6625 0.103208 GCCCTGATACTGTCGTGGAG 59.897 60.000 0.00 0.00 0.00 3.86
3443 6626 0.747255 CCCTGATACTGTCGTGGAGG 59.253 60.000 0.00 0.00 0.00 4.30
3444 6627 0.747255 CCTGATACTGTCGTGGAGGG 59.253 60.000 0.00 0.00 0.00 4.30
3445 6628 0.103208 CTGATACTGTCGTGGAGGGC 59.897 60.000 0.00 0.00 0.00 5.19
3446 6629 1.065928 GATACTGTCGTGGAGGGCG 59.934 63.158 0.00 0.00 0.00 6.13
3447 6630 2.351336 GATACTGTCGTGGAGGGCGG 62.351 65.000 0.00 0.00 0.00 6.13
3448 6631 3.873679 TACTGTCGTGGAGGGCGGT 62.874 63.158 0.00 0.00 0.00 5.68
3449 6632 4.742201 CTGTCGTGGAGGGCGGTG 62.742 72.222 0.00 0.00 0.00 4.94
3470 6653 3.013990 GAGCACGTCGAGATCGCG 61.014 66.667 13.06 13.06 41.76 5.87
3473 6656 3.598562 CACGTCGAGATCGCGCAC 61.599 66.667 14.47 11.75 40.50 5.34
3474 6657 4.831307 ACGTCGAGATCGCGCACC 62.831 66.667 14.47 3.69 40.50 5.01
3497 6680 4.055654 GGCATCAAGGCGGAGATC 57.944 61.111 0.00 0.00 33.57 2.75
3498 6681 1.146930 GGCATCAAGGCGGAGATCA 59.853 57.895 0.00 0.00 33.57 2.92
3499 6682 1.162800 GGCATCAAGGCGGAGATCAC 61.163 60.000 0.00 0.00 33.57 3.06
3500 6683 1.162800 GCATCAAGGCGGAGATCACC 61.163 60.000 0.00 0.00 0.00 4.02
3501 6684 0.533755 CATCAAGGCGGAGATCACCC 60.534 60.000 3.35 0.00 0.00 4.61
3502 6685 0.982852 ATCAAGGCGGAGATCACCCA 60.983 55.000 3.35 0.00 0.00 4.51
3503 6686 1.153289 CAAGGCGGAGATCACCCAG 60.153 63.158 3.35 0.00 0.00 4.45
3504 6687 3.036429 AAGGCGGAGATCACCCAGC 62.036 63.158 3.35 2.21 0.00 4.85
3505 6688 3.474570 GGCGGAGATCACCCAGCT 61.475 66.667 3.35 0.00 0.00 4.24
3506 6689 2.202987 GCGGAGATCACCCAGCTG 60.203 66.667 6.78 6.78 0.00 4.24
3507 6690 2.202987 CGGAGATCACCCAGCTGC 60.203 66.667 8.66 0.00 0.00 5.25
3508 6691 2.729479 CGGAGATCACCCAGCTGCT 61.729 63.158 8.66 0.00 0.00 4.24
3509 6692 1.153208 GGAGATCACCCAGCTGCTG 60.153 63.158 22.44 22.44 0.00 4.41
3510 6693 1.818785 GAGATCACCCAGCTGCTGC 60.819 63.158 23.86 7.62 40.05 5.25
3511 6694 2.045634 GATCACCCAGCTGCTGCA 60.046 61.111 23.86 0.88 42.74 4.41
3512 6695 2.360852 ATCACCCAGCTGCTGCAC 60.361 61.111 23.86 0.00 42.74 4.57
3513 6696 4.994471 TCACCCAGCTGCTGCACG 62.994 66.667 23.86 14.78 42.74 5.34
3562 6745 3.839432 CGCCGGTTCCTCCTCCTC 61.839 72.222 1.90 0.00 0.00 3.71
3563 6746 3.471806 GCCGGTTCCTCCTCCTCC 61.472 72.222 1.90 0.00 0.00 4.30
3564 6747 2.764547 CCGGTTCCTCCTCCTCCC 60.765 72.222 0.00 0.00 0.00 4.30
3565 6748 2.364961 CGGTTCCTCCTCCTCCCT 59.635 66.667 0.00 0.00 0.00 4.20
3566 6749 2.060980 CGGTTCCTCCTCCTCCCTG 61.061 68.421 0.00 0.00 0.00 4.45
3567 6750 2.371259 GGTTCCTCCTCCTCCCTGC 61.371 68.421 0.00 0.00 0.00 4.85
3568 6751 2.041265 TTCCTCCTCCTCCCTGCC 59.959 66.667 0.00 0.00 0.00 4.85
3569 6752 2.571816 TTCCTCCTCCTCCCTGCCT 61.572 63.158 0.00 0.00 0.00 4.75
3570 6753 2.767496 CCTCCTCCTCCCTGCCTG 60.767 72.222 0.00 0.00 0.00 4.85
3571 6754 3.478274 CTCCTCCTCCCTGCCTGC 61.478 72.222 0.00 0.00 0.00 4.85
3574 6757 3.795041 CTCCTCCCTGCCTGCCTG 61.795 72.222 0.00 0.00 0.00 4.85
3577 6760 3.795041 CTCCCTGCCTGCCTGGAG 61.795 72.222 0.00 8.95 38.56 3.86
3621 6804 3.532155 CGCCGGAAGAGGAGGAGG 61.532 72.222 5.05 0.00 0.00 4.30
3622 6805 3.855853 GCCGGAAGAGGAGGAGGC 61.856 72.222 5.05 0.00 37.61 4.70
3623 6806 3.157949 CCGGAAGAGGAGGAGGCC 61.158 72.222 0.00 0.00 0.00 5.19
3624 6807 3.532155 CGGAAGAGGAGGAGGCCG 61.532 72.222 0.00 0.00 0.00 6.13
3625 6808 3.157949 GGAAGAGGAGGAGGCCGG 61.158 72.222 0.00 0.00 0.00 6.13
3626 6809 3.157949 GAAGAGGAGGAGGCCGGG 61.158 72.222 2.18 0.00 0.00 5.73
3639 6822 4.020617 CCGGGCAGAGGCAGAACA 62.021 66.667 0.00 0.00 43.71 3.18
3640 6823 2.032528 CGGGCAGAGGCAGAACAA 59.967 61.111 0.00 0.00 43.71 2.83
3641 6824 2.037136 CGGGCAGAGGCAGAACAAG 61.037 63.158 0.00 0.00 43.71 3.16
3642 6825 1.376466 GGGCAGAGGCAGAACAAGA 59.624 57.895 0.00 0.00 43.71 3.02
3643 6826 0.250901 GGGCAGAGGCAGAACAAGAA 60.251 55.000 0.00 0.00 43.71 2.52
3644 6827 1.163554 GGCAGAGGCAGAACAAGAAG 58.836 55.000 0.00 0.00 43.71 2.85
3645 6828 0.520847 GCAGAGGCAGAACAAGAAGC 59.479 55.000 0.00 0.00 40.72 3.86
3646 6829 0.795085 CAGAGGCAGAACAAGAAGCG 59.205 55.000 0.00 0.00 0.00 4.68
3647 6830 0.681733 AGAGGCAGAACAAGAAGCGA 59.318 50.000 0.00 0.00 0.00 4.93
3648 6831 1.070758 AGAGGCAGAACAAGAAGCGAA 59.929 47.619 0.00 0.00 0.00 4.70
3649 6832 1.873591 GAGGCAGAACAAGAAGCGAAA 59.126 47.619 0.00 0.00 0.00 3.46
3650 6833 1.876156 AGGCAGAACAAGAAGCGAAAG 59.124 47.619 0.00 0.00 0.00 2.62
3708 6891 4.373116 GGTTCGACGAGCAGCCCA 62.373 66.667 13.83 0.00 0.00 5.36
3709 6892 2.811317 GTTCGACGAGCAGCCCAG 60.811 66.667 6.84 0.00 0.00 4.45
3710 6893 4.069232 TTCGACGAGCAGCCCAGG 62.069 66.667 0.00 0.00 0.00 4.45
3712 6895 4.379243 CGACGAGCAGCCCAGGTT 62.379 66.667 0.00 0.00 0.00 3.50
3713 6896 2.435059 GACGAGCAGCCCAGGTTC 60.435 66.667 0.00 0.00 0.00 3.62
3714 6897 2.925170 ACGAGCAGCCCAGGTTCT 60.925 61.111 0.00 0.00 0.00 3.01
3715 6898 2.348998 CGAGCAGCCCAGGTTCTT 59.651 61.111 0.00 0.00 0.00 2.52
3716 6899 2.037136 CGAGCAGCCCAGGTTCTTG 61.037 63.158 0.00 0.00 0.00 3.02
3717 6900 2.282745 AGCAGCCCAGGTTCTTGC 60.283 61.111 0.00 0.00 0.00 4.01
3718 6901 3.376918 GCAGCCCAGGTTCTTGCC 61.377 66.667 0.00 0.00 0.00 4.52
3719 6902 2.677875 CAGCCCAGGTTCTTGCCC 60.678 66.667 0.00 0.00 0.00 5.36
3720 6903 3.984732 AGCCCAGGTTCTTGCCCC 61.985 66.667 0.00 0.00 0.00 5.80
3722 6905 4.740822 CCCAGGTTCTTGCCCCGG 62.741 72.222 0.00 0.00 0.00 5.73
3723 6906 3.966543 CCAGGTTCTTGCCCCGGT 61.967 66.667 0.00 0.00 0.00 5.28
3724 6907 2.672996 CAGGTTCTTGCCCCGGTG 60.673 66.667 0.00 0.00 0.00 4.94
3725 6908 4.660938 AGGTTCTTGCCCCGGTGC 62.661 66.667 0.23 0.23 0.00 5.01
3762 6945 0.526662 CCGGACGGGATCATAGTAGC 59.473 60.000 0.00 0.00 38.47 3.58
3763 6946 0.526662 CGGACGGGATCATAGTAGCC 59.473 60.000 0.00 0.00 0.00 3.93
3764 6947 0.526662 GGACGGGATCATAGTAGCCG 59.473 60.000 0.00 0.00 0.00 5.52
3765 6948 0.526662 GACGGGATCATAGTAGCCGG 59.473 60.000 0.00 0.00 0.00 6.13
3766 6949 0.111832 ACGGGATCATAGTAGCCGGA 59.888 55.000 5.05 0.00 0.00 5.14
3767 6950 1.254026 CGGGATCATAGTAGCCGGAA 58.746 55.000 5.05 0.00 0.00 4.30
3768 6951 1.616865 CGGGATCATAGTAGCCGGAAA 59.383 52.381 5.05 0.00 0.00 3.13
3769 6952 2.609737 CGGGATCATAGTAGCCGGAAAC 60.610 54.545 5.05 1.02 0.00 2.78
3781 6964 2.670592 GGAAACGGGGAACGGTGG 60.671 66.667 0.00 0.00 45.59 4.61
3782 6965 2.670592 GAAACGGGGAACGGTGGG 60.671 66.667 0.00 0.00 45.59 4.61
3783 6966 4.960866 AAACGGGGAACGGTGGGC 62.961 66.667 0.00 0.00 45.59 5.36
3800 6983 2.597805 CCGTCCCTCGATCCGGAT 60.598 66.667 19.21 19.21 43.01 4.18
3801 6984 2.201022 CCGTCCCTCGATCCGGATT 61.201 63.158 20.22 1.69 43.01 3.01
3802 6985 1.286260 CGTCCCTCGATCCGGATTC 59.714 63.158 20.22 10.87 42.86 2.52
3803 6986 1.452953 CGTCCCTCGATCCGGATTCA 61.453 60.000 20.22 7.26 42.86 2.57
3804 6987 0.969894 GTCCCTCGATCCGGATTCAT 59.030 55.000 20.22 0.00 0.00 2.57
3805 6988 1.067495 GTCCCTCGATCCGGATTCATC 60.067 57.143 20.22 5.44 0.00 2.92
3806 6989 0.109086 CCCTCGATCCGGATTCATCG 60.109 60.000 20.22 18.46 42.72 3.84
3807 6990 0.881796 CCTCGATCCGGATTCATCGA 59.118 55.000 22.66 22.66 46.63 3.59
3808 6991 1.401670 CCTCGATCCGGATTCATCGAC 60.402 57.143 20.87 5.49 44.56 4.20
3809 6992 0.596577 TCGATCCGGATTCATCGACC 59.403 55.000 20.87 4.79 44.56 4.79
3810 6993 0.388649 CGATCCGGATTCATCGACCC 60.389 60.000 20.22 0.78 43.83 4.46
3811 6994 0.388649 GATCCGGATTCATCGACCCG 60.389 60.000 20.22 0.00 41.47 5.28
3813 6996 3.125607 CGGATTCATCGACCCGGA 58.874 61.111 0.73 0.00 38.42 5.14
3814 6997 1.440060 CGGATTCATCGACCCGGAA 59.560 57.895 0.73 0.00 38.42 4.30
3815 6998 0.033504 CGGATTCATCGACCCGGAAT 59.966 55.000 0.73 0.00 38.42 3.01
3816 6999 1.797025 GGATTCATCGACCCGGAATC 58.203 55.000 0.73 16.51 43.79 2.52
3817 7000 1.070134 GGATTCATCGACCCGGAATCA 59.930 52.381 21.99 0.00 45.42 2.57
3818 7001 2.408050 GATTCATCGACCCGGAATCAG 58.592 52.381 18.46 0.00 43.90 2.90
3819 7002 1.480789 TTCATCGACCCGGAATCAGA 58.519 50.000 0.73 2.98 0.00 3.27
3820 7003 1.704641 TCATCGACCCGGAATCAGAT 58.295 50.000 0.73 5.24 0.00 2.90
3821 7004 2.039418 TCATCGACCCGGAATCAGATT 58.961 47.619 0.73 0.00 0.00 2.40
3822 7005 2.035961 TCATCGACCCGGAATCAGATTC 59.964 50.000 14.09 14.09 38.55 2.52
3823 7006 0.384309 TCGACCCGGAATCAGATTCG 59.616 55.000 15.65 11.20 40.17 3.34
3824 7007 0.597637 CGACCCGGAATCAGATTCGG 60.598 60.000 19.32 19.32 40.17 4.30
3829 7012 2.309528 CGGAATCAGATTCGGGAACA 57.690 50.000 18.74 0.00 40.17 3.18
3830 7013 2.627945 CGGAATCAGATTCGGGAACAA 58.372 47.619 18.74 0.00 40.17 2.83
3831 7014 2.609459 CGGAATCAGATTCGGGAACAAG 59.391 50.000 18.74 1.35 40.17 3.16
3832 7015 2.945668 GGAATCAGATTCGGGAACAAGG 59.054 50.000 15.65 0.00 40.17 3.61
3833 7016 2.717639 ATCAGATTCGGGAACAAGGG 57.282 50.000 0.00 0.00 0.00 3.95
3834 7017 1.358152 TCAGATTCGGGAACAAGGGT 58.642 50.000 0.00 0.00 0.00 4.34
3835 7018 1.278127 TCAGATTCGGGAACAAGGGTC 59.722 52.381 0.00 0.00 0.00 4.46
3836 7019 0.249398 AGATTCGGGAACAAGGGTCG 59.751 55.000 0.00 0.00 0.00 4.79
3837 7020 0.248289 GATTCGGGAACAAGGGTCGA 59.752 55.000 0.00 0.00 0.00 4.20
3838 7021 0.909623 ATTCGGGAACAAGGGTCGAT 59.090 50.000 0.00 0.00 0.00 3.59
3839 7022 0.688487 TTCGGGAACAAGGGTCGATT 59.312 50.000 0.00 0.00 0.00 3.34
3840 7023 0.248289 TCGGGAACAAGGGTCGATTC 59.752 55.000 0.00 0.00 0.00 2.52
3841 7024 1.082117 CGGGAACAAGGGTCGATTCG 61.082 60.000 0.00 0.00 0.00 3.34
3842 7025 0.743345 GGGAACAAGGGTCGATTCGG 60.743 60.000 6.18 0.00 0.00 4.30
3843 7026 0.036671 GGAACAAGGGTCGATTCGGT 60.037 55.000 6.18 0.00 0.00 4.69
3844 7027 1.205417 GGAACAAGGGTCGATTCGGTA 59.795 52.381 6.18 0.00 0.00 4.02
3845 7028 2.354003 GGAACAAGGGTCGATTCGGTAA 60.354 50.000 6.18 0.00 0.00 2.85
3846 7029 2.667473 ACAAGGGTCGATTCGGTAAG 57.333 50.000 6.18 0.00 0.00 2.34
3847 7030 2.173519 ACAAGGGTCGATTCGGTAAGA 58.826 47.619 6.18 0.00 0.00 2.10
3848 7031 2.764572 ACAAGGGTCGATTCGGTAAGAT 59.235 45.455 6.18 0.00 0.00 2.40
3849 7032 3.197116 ACAAGGGTCGATTCGGTAAGATT 59.803 43.478 6.18 0.00 0.00 2.40
3850 7033 3.729862 AGGGTCGATTCGGTAAGATTC 57.270 47.619 6.18 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 19 0.178953 AAGGTCCAAACATGCCTGCT 60.179 50.000 0.00 0.00 0.00 4.24
73 75 7.437862 TGGAAAATCTGTTATGAACTTGTTTGC 59.562 33.333 0.00 0.00 0.00 3.68
87 324 6.324770 ACAAGAGAATGGTTGGAAAATCTGTT 59.675 34.615 0.00 0.00 0.00 3.16
134 388 7.905604 TGGAGAAATATGTATATTCCTTGCG 57.094 36.000 0.00 0.00 32.08 4.85
296 567 4.852134 TTTCAGCTTGAAATTAGCAGCA 57.148 36.364 0.00 0.00 41.02 4.41
348 619 5.808042 TCAAGATGCTCTGCTACAATTTC 57.192 39.130 0.00 0.00 0.00 2.17
361 632 5.366186 AGGAGTATCATGAGTTCAAGATGCT 59.634 40.000 14.75 14.75 45.08 3.79
363 634 9.605275 TTTTAGGAGTATCATGAGTTCAAGATG 57.395 33.333 0.09 0.00 35.40 2.90
364 635 9.606631 GTTTTAGGAGTATCATGAGTTCAAGAT 57.393 33.333 0.09 5.35 37.89 2.40
365 636 8.816894 AGTTTTAGGAGTATCATGAGTTCAAGA 58.183 33.333 0.09 0.00 36.25 3.02
366 637 8.877779 CAGTTTTAGGAGTATCATGAGTTCAAG 58.122 37.037 0.09 0.00 36.25 3.02
367 638 7.334421 GCAGTTTTAGGAGTATCATGAGTTCAA 59.666 37.037 0.09 0.00 36.25 2.69
389 769 8.023021 TCACCAACTCTATATAAATCAGCAGT 57.977 34.615 0.00 0.00 0.00 4.40
390 770 8.893219 TTCACCAACTCTATATAAATCAGCAG 57.107 34.615 0.00 0.00 0.00 4.24
399 779 7.437267 GCGCTAAAACTTCACCAACTCTATATA 59.563 37.037 0.00 0.00 0.00 0.86
401 781 5.579511 GCGCTAAAACTTCACCAACTCTATA 59.420 40.000 0.00 0.00 0.00 1.31
402 782 4.392138 GCGCTAAAACTTCACCAACTCTAT 59.608 41.667 0.00 0.00 0.00 1.98
403 783 3.744426 GCGCTAAAACTTCACCAACTCTA 59.256 43.478 0.00 0.00 0.00 2.43
404 784 2.548480 GCGCTAAAACTTCACCAACTCT 59.452 45.455 0.00 0.00 0.00 3.24
405 785 2.548480 AGCGCTAAAACTTCACCAACTC 59.452 45.455 8.99 0.00 0.00 3.01
408 788 2.548057 CAGAGCGCTAAAACTTCACCAA 59.452 45.455 11.50 0.00 0.00 3.67
410 790 2.143925 ACAGAGCGCTAAAACTTCACC 58.856 47.619 11.50 0.00 0.00 4.02
411 791 2.157863 GGACAGAGCGCTAAAACTTCAC 59.842 50.000 11.50 0.00 0.00 3.18
412 792 2.037251 AGGACAGAGCGCTAAAACTTCA 59.963 45.455 11.50 0.00 0.00 3.02
413 793 2.689646 AGGACAGAGCGCTAAAACTTC 58.310 47.619 11.50 0.76 0.00 3.01
419 799 1.948145 GCTAGTAGGACAGAGCGCTAA 59.052 52.381 11.50 0.00 0.00 3.09
420 800 1.141254 AGCTAGTAGGACAGAGCGCTA 59.859 52.381 11.50 0.00 39.96 4.26
421 801 0.106918 AGCTAGTAGGACAGAGCGCT 60.107 55.000 11.27 11.27 39.96 5.92
422 802 0.741915 AAGCTAGTAGGACAGAGCGC 59.258 55.000 0.00 0.00 39.96 5.92
424 804 2.545731 GCAAAGCTAGTAGGACAGAGC 58.454 52.381 0.00 0.00 35.07 4.09
425 805 2.763448 AGGCAAAGCTAGTAGGACAGAG 59.237 50.000 0.00 0.00 0.00 3.35
426 806 2.497675 CAGGCAAAGCTAGTAGGACAGA 59.502 50.000 0.00 0.00 0.00 3.41
427 807 2.234908 ACAGGCAAAGCTAGTAGGACAG 59.765 50.000 0.00 0.00 0.00 3.51
429 809 3.003480 CAACAGGCAAAGCTAGTAGGAC 58.997 50.000 0.00 0.00 0.00 3.85
676 1077 1.682451 CCGGTGAATCGCCTTCCCTA 61.682 60.000 11.41 0.00 32.49 3.53
768 1169 7.665559 AGCTTGACTGGTATAAAGATGTTCAAA 59.334 33.333 0.00 0.00 0.00 2.69
785 1186 5.816258 ACTCACATTCATATGAGCTTGACTG 59.184 40.000 15.33 2.82 45.23 3.51
852 1253 9.748708 TGAAATTGTTTTTCTAATCCTGTGAAG 57.251 29.630 0.42 0.00 0.00 3.02
924 1329 1.069978 GAGCCTTATGAGTGGAGCCTC 59.930 57.143 0.00 0.00 0.00 4.70
925 1330 1.127343 GAGCCTTATGAGTGGAGCCT 58.873 55.000 0.00 0.00 0.00 4.58
926 1331 0.833287 TGAGCCTTATGAGTGGAGCC 59.167 55.000 0.00 0.00 0.00 4.70
927 1332 2.103771 TGATGAGCCTTATGAGTGGAGC 59.896 50.000 0.00 0.00 0.00 4.70
928 1333 3.244146 CCTGATGAGCCTTATGAGTGGAG 60.244 52.174 0.00 0.00 0.00 3.86
929 1334 2.702478 CCTGATGAGCCTTATGAGTGGA 59.298 50.000 0.00 0.00 0.00 4.02
930 1335 2.702478 TCCTGATGAGCCTTATGAGTGG 59.298 50.000 0.00 0.00 0.00 4.00
933 1338 4.412796 TGTTCCTGATGAGCCTTATGAG 57.587 45.455 0.00 0.00 0.00 2.90
935 1340 3.819337 CCATGTTCCTGATGAGCCTTATG 59.181 47.826 0.00 0.00 0.00 1.90
936 1341 3.749954 GCCATGTTCCTGATGAGCCTTAT 60.750 47.826 0.00 0.00 0.00 1.73
937 1342 2.421952 GCCATGTTCCTGATGAGCCTTA 60.422 50.000 0.00 0.00 0.00 2.69
938 1343 1.684248 GCCATGTTCCTGATGAGCCTT 60.684 52.381 0.00 0.00 0.00 4.35
939 1344 0.106819 GCCATGTTCCTGATGAGCCT 60.107 55.000 0.00 0.00 0.00 4.58
940 1345 1.105759 GGCCATGTTCCTGATGAGCC 61.106 60.000 0.00 0.00 33.12 4.70
941 1346 0.106819 AGGCCATGTTCCTGATGAGC 60.107 55.000 5.01 0.00 31.53 4.26
942 1347 3.565764 TTAGGCCATGTTCCTGATGAG 57.434 47.619 5.01 0.00 35.21 2.90
943 1348 4.263905 ACTTTTAGGCCATGTTCCTGATGA 60.264 41.667 5.01 0.00 35.21 2.92
944 1349 4.019174 ACTTTTAGGCCATGTTCCTGATG 58.981 43.478 5.01 7.14 35.21 3.07
945 1350 4.019174 CACTTTTAGGCCATGTTCCTGAT 58.981 43.478 5.01 0.00 35.21 2.90
946 1351 3.073798 TCACTTTTAGGCCATGTTCCTGA 59.926 43.478 5.01 3.40 35.21 3.86
947 1352 3.191371 GTCACTTTTAGGCCATGTTCCTG 59.809 47.826 5.01 0.00 35.21 3.86
948 1353 3.074538 AGTCACTTTTAGGCCATGTTCCT 59.925 43.478 5.01 8.57 37.72 3.36
949 1354 3.421844 AGTCACTTTTAGGCCATGTTCC 58.578 45.455 5.01 0.00 0.00 3.62
950 1355 5.122396 CACTAGTCACTTTTAGGCCATGTTC 59.878 44.000 5.01 0.00 0.00 3.18
951 1356 5.003804 CACTAGTCACTTTTAGGCCATGTT 58.996 41.667 5.01 0.00 0.00 2.71
952 1357 4.041691 ACACTAGTCACTTTTAGGCCATGT 59.958 41.667 5.01 0.00 0.00 3.21
955 1360 4.699925 AACACTAGTCACTTTTAGGCCA 57.300 40.909 5.01 0.00 0.00 5.36
956 1361 5.519206 CGATAACACTAGTCACTTTTAGGCC 59.481 44.000 0.00 0.00 0.00 5.19
957 1362 5.005490 GCGATAACACTAGTCACTTTTAGGC 59.995 44.000 0.00 0.00 0.00 3.93
958 1363 5.229469 CGCGATAACACTAGTCACTTTTAGG 59.771 44.000 0.00 0.00 0.00 2.69
959 1364 5.798934 ACGCGATAACACTAGTCACTTTTAG 59.201 40.000 15.93 0.00 0.00 1.85
961 1366 4.384846 CACGCGATAACACTAGTCACTTTT 59.615 41.667 15.93 0.00 0.00 2.27
962 1367 3.918591 CACGCGATAACACTAGTCACTTT 59.081 43.478 15.93 0.00 0.00 2.66
963 1368 3.499048 CACGCGATAACACTAGTCACTT 58.501 45.455 15.93 0.00 0.00 3.16
964 1369 2.731341 GCACGCGATAACACTAGTCACT 60.731 50.000 15.93 0.00 0.00 3.41
965 1370 1.582502 GCACGCGATAACACTAGTCAC 59.417 52.381 15.93 0.00 0.00 3.67
966 1371 1.792632 CGCACGCGATAACACTAGTCA 60.793 52.381 15.93 0.00 42.83 3.41
967 1372 0.838229 CGCACGCGATAACACTAGTC 59.162 55.000 15.93 0.00 42.83 2.59
968 1373 1.138047 GCGCACGCGATAACACTAGT 61.138 55.000 15.93 0.00 42.83 2.57
969 1374 1.553654 GCGCACGCGATAACACTAG 59.446 57.895 15.93 0.00 42.83 2.57
970 1375 3.683055 GCGCACGCGATAACACTA 58.317 55.556 15.93 0.00 42.83 2.74
1080 1485 4.168291 GAAGGAGGGAGCAGGCGG 62.168 72.222 0.00 0.00 0.00 6.13
1329 1739 4.241555 GAGTGGCCCATCGCGGAT 62.242 66.667 6.13 0.00 38.94 4.18
1462 1872 1.446272 CCTTCAGGTCTTCGGCGAC 60.446 63.158 10.16 0.00 0.00 5.19
1572 1982 2.747686 GGTTGGTCAGAGGCCGAA 59.252 61.111 0.00 0.00 0.00 4.30
1576 1986 4.410400 CCGGGGTTGGTCAGAGGC 62.410 72.222 0.00 0.00 0.00 4.70
1710 2120 3.496692 CCAACTCCTCTTCATTGGTGTCA 60.497 47.826 0.00 0.00 37.42 3.58
2016 2435 2.037251 GCTTAGAGGACGCCATGGATTA 59.963 50.000 18.40 0.00 0.00 1.75
2254 4323 1.065410 TCTGGAAAGCTCCCAACCCA 61.065 55.000 8.86 0.00 41.64 4.51
2270 4339 3.847602 CAGCCTCCGCCCTCTCTG 61.848 72.222 0.00 0.00 34.57 3.35
2503 4772 0.681564 AGAACCGGAGACTCGAGCAT 60.682 55.000 13.61 0.00 0.00 3.79
2594 4864 4.564372 CACACAAGATCACTAATGAGTCCG 59.436 45.833 0.00 0.00 38.57 4.79
3317 6500 9.794685 ATAGCGAAATGATATGATGTACAGTAG 57.205 33.333 0.33 0.00 0.00 2.57
3321 6504 9.087424 GCTTATAGCGAAATGATATGATGTACA 57.913 33.333 0.00 0.00 30.35 2.90
3322 6505 9.087424 TGCTTATAGCGAAATGATATGATGTAC 57.913 33.333 0.00 0.00 46.26 2.90
3323 6506 9.651913 TTGCTTATAGCGAAATGATATGATGTA 57.348 29.630 0.00 0.00 46.26 2.29
3324 6507 8.552083 TTGCTTATAGCGAAATGATATGATGT 57.448 30.769 0.00 0.00 46.26 3.06
3325 6508 7.639072 GCTTGCTTATAGCGAAATGATATGATG 59.361 37.037 0.00 0.00 46.26 3.07
3326 6509 7.551974 AGCTTGCTTATAGCGAAATGATATGAT 59.448 33.333 0.00 0.00 46.26 2.45
3327 6510 6.875726 AGCTTGCTTATAGCGAAATGATATGA 59.124 34.615 0.00 0.00 46.26 2.15
3328 6511 7.069852 AGCTTGCTTATAGCGAAATGATATG 57.930 36.000 0.00 0.00 46.26 1.78
3329 6512 7.678947 AAGCTTGCTTATAGCGAAATGATAT 57.321 32.000 6.02 0.00 46.26 1.63
3330 6513 7.226523 TGAAAGCTTGCTTATAGCGAAATGATA 59.773 33.333 5.89 0.00 46.26 2.15
3331 6514 6.038603 TGAAAGCTTGCTTATAGCGAAATGAT 59.961 34.615 5.89 0.00 46.26 2.45
3332 6515 5.353956 TGAAAGCTTGCTTATAGCGAAATGA 59.646 36.000 5.89 0.00 46.26 2.57
3333 6516 5.572211 TGAAAGCTTGCTTATAGCGAAATG 58.428 37.500 5.89 0.00 46.26 2.32
3334 6517 5.818136 TGAAAGCTTGCTTATAGCGAAAT 57.182 34.783 5.89 0.00 46.26 2.17
3335 6518 5.181245 AGTTGAAAGCTTGCTTATAGCGAAA 59.819 36.000 5.89 0.00 46.26 3.46
3336 6519 4.695455 AGTTGAAAGCTTGCTTATAGCGAA 59.305 37.500 5.89 0.00 46.26 4.70
3337 6520 4.093408 CAGTTGAAAGCTTGCTTATAGCGA 59.907 41.667 5.89 0.00 46.26 4.93
3338 6521 4.093408 TCAGTTGAAAGCTTGCTTATAGCG 59.907 41.667 5.89 0.00 46.26 4.26
3339 6522 5.551760 TCAGTTGAAAGCTTGCTTATAGC 57.448 39.130 5.89 3.45 42.82 2.97
3340 6523 7.408123 CAGATCAGTTGAAAGCTTGCTTATAG 58.592 38.462 5.89 0.00 0.00 1.31
3341 6524 6.317140 CCAGATCAGTTGAAAGCTTGCTTATA 59.683 38.462 5.89 0.00 0.00 0.98
3342 6525 5.125097 CCAGATCAGTTGAAAGCTTGCTTAT 59.875 40.000 5.89 0.00 0.00 1.73
3343 6526 4.456911 CCAGATCAGTTGAAAGCTTGCTTA 59.543 41.667 5.89 0.00 0.00 3.09
3344 6527 3.255149 CCAGATCAGTTGAAAGCTTGCTT 59.745 43.478 5.89 1.55 0.00 3.91
3345 6528 2.818432 CCAGATCAGTTGAAAGCTTGCT 59.182 45.455 5.89 0.00 0.00 3.91
3346 6529 2.670509 GCCAGATCAGTTGAAAGCTTGC 60.671 50.000 0.00 0.00 0.00 4.01
3347 6530 2.818432 AGCCAGATCAGTTGAAAGCTTG 59.182 45.455 0.00 0.00 0.00 4.01
3348 6531 3.080319 GAGCCAGATCAGTTGAAAGCTT 58.920 45.455 0.00 0.00 0.00 3.74
3349 6532 2.617532 GGAGCCAGATCAGTTGAAAGCT 60.618 50.000 0.00 0.00 0.00 3.74
3350 6533 1.742268 GGAGCCAGATCAGTTGAAAGC 59.258 52.381 0.00 0.00 0.00 3.51
3351 6534 3.063510 TGGAGCCAGATCAGTTGAAAG 57.936 47.619 0.00 0.00 0.00 2.62
3352 6535 3.349927 CATGGAGCCAGATCAGTTGAAA 58.650 45.455 0.00 0.00 0.00 2.69
3353 6536 2.356432 CCATGGAGCCAGATCAGTTGAA 60.356 50.000 5.56 0.00 0.00 2.69
3354 6537 1.211212 CCATGGAGCCAGATCAGTTGA 59.789 52.381 5.56 0.00 0.00 3.18
3355 6538 1.676746 CCATGGAGCCAGATCAGTTG 58.323 55.000 5.56 0.00 0.00 3.16
3356 6539 0.549950 CCCATGGAGCCAGATCAGTT 59.450 55.000 15.22 0.00 0.00 3.16
3357 6540 1.351080 CCCCATGGAGCCAGATCAGT 61.351 60.000 15.22 0.00 0.00 3.41
3358 6541 1.351080 ACCCCATGGAGCCAGATCAG 61.351 60.000 15.22 0.00 34.81 2.90
3359 6542 0.920763 AACCCCATGGAGCCAGATCA 60.921 55.000 15.22 0.00 34.81 2.92
3360 6543 0.259938 AAACCCCATGGAGCCAGATC 59.740 55.000 15.22 0.00 34.81 2.75
3361 6544 0.712380 AAAACCCCATGGAGCCAGAT 59.288 50.000 15.22 0.00 34.81 2.90
3362 6545 0.251742 CAAAACCCCATGGAGCCAGA 60.252 55.000 15.22 0.00 34.81 3.86
3363 6546 1.891722 GCAAAACCCCATGGAGCCAG 61.892 60.000 15.22 0.00 34.81 4.85
3364 6547 1.912763 GCAAAACCCCATGGAGCCA 60.913 57.895 15.22 0.00 34.81 4.75
3365 6548 2.659063 GGCAAAACCCCATGGAGCC 61.659 63.158 15.22 12.39 33.98 4.70
3366 6549 1.194121 AAGGCAAAACCCCATGGAGC 61.194 55.000 15.22 6.99 40.58 4.70
3367 6550 0.609662 CAAGGCAAAACCCCATGGAG 59.390 55.000 15.22 0.97 40.58 3.86
3368 6551 0.835543 CCAAGGCAAAACCCCATGGA 60.836 55.000 15.22 0.00 38.76 3.41
3369 6552 0.835543 TCCAAGGCAAAACCCCATGG 60.836 55.000 4.14 4.14 40.58 3.66
3370 6553 1.065998 CATCCAAGGCAAAACCCCATG 60.066 52.381 0.00 0.00 40.58 3.66
3371 6554 1.278537 CATCCAAGGCAAAACCCCAT 58.721 50.000 0.00 0.00 40.58 4.00
3372 6555 0.835543 CCATCCAAGGCAAAACCCCA 60.836 55.000 0.00 0.00 40.58 4.96
3373 6556 0.544120 TCCATCCAAGGCAAAACCCC 60.544 55.000 0.00 0.00 40.58 4.95
3374 6557 0.608130 GTCCATCCAAGGCAAAACCC 59.392 55.000 0.00 0.00 40.58 4.11
3375 6558 1.273327 CTGTCCATCCAAGGCAAAACC 59.727 52.381 0.00 0.00 39.61 3.27
3376 6559 2.238521 TCTGTCCATCCAAGGCAAAAC 58.761 47.619 0.00 0.00 0.00 2.43
3377 6560 2.627699 GTTCTGTCCATCCAAGGCAAAA 59.372 45.455 0.00 0.00 0.00 2.44
3378 6561 2.238521 GTTCTGTCCATCCAAGGCAAA 58.761 47.619 0.00 0.00 0.00 3.68
3379 6562 1.547675 GGTTCTGTCCATCCAAGGCAA 60.548 52.381 0.00 0.00 0.00 4.52
3380 6563 0.038166 GGTTCTGTCCATCCAAGGCA 59.962 55.000 0.00 0.00 0.00 4.75
3381 6564 0.038166 TGGTTCTGTCCATCCAAGGC 59.962 55.000 0.00 0.00 31.96 4.35
3382 6565 1.340405 CCTGGTTCTGTCCATCCAAGG 60.340 57.143 0.00 0.00 36.84 3.61
3383 6566 1.952367 GCCTGGTTCTGTCCATCCAAG 60.952 57.143 0.00 0.00 36.84 3.61
3384 6567 0.038166 GCCTGGTTCTGTCCATCCAA 59.962 55.000 0.00 0.00 36.84 3.53
3385 6568 1.685224 GCCTGGTTCTGTCCATCCA 59.315 57.895 0.00 0.00 36.84 3.41
3386 6569 1.077429 GGCCTGGTTCTGTCCATCC 60.077 63.158 0.00 0.00 36.84 3.51
3387 6570 0.257039 ATGGCCTGGTTCTGTCCATC 59.743 55.000 3.32 0.00 36.84 3.51
3388 6571 0.033796 CATGGCCTGGTTCTGTCCAT 60.034 55.000 3.32 0.00 37.99 3.41
3389 6572 1.379916 CATGGCCTGGTTCTGTCCA 59.620 57.895 3.32 0.00 36.00 4.02
3390 6573 1.379044 CCATGGCCTGGTTCTGTCC 60.379 63.158 3.32 0.00 40.49 4.02
3391 6574 4.326255 CCATGGCCTGGTTCTGTC 57.674 61.111 3.32 0.00 40.49 3.51
3403 6586 3.626996 TTCACCTGCCTCGCCATGG 62.627 63.158 7.63 7.63 0.00 3.66
3404 6587 2.046023 TTCACCTGCCTCGCCATG 60.046 61.111 0.00 0.00 0.00 3.66
3405 6588 2.045926 GTTCACCTGCCTCGCCAT 60.046 61.111 0.00 0.00 0.00 4.40
3406 6589 4.680237 CGTTCACCTGCCTCGCCA 62.680 66.667 0.00 0.00 0.00 5.69
3415 6598 0.537188 CAGTATCAGGGCGTTCACCT 59.463 55.000 0.00 0.00 39.43 4.00
3416 6599 0.249398 ACAGTATCAGGGCGTTCACC 59.751 55.000 0.00 0.00 0.00 4.02
3417 6600 1.641577 GACAGTATCAGGGCGTTCAC 58.358 55.000 0.00 0.00 0.00 3.18
3418 6601 0.172578 CGACAGTATCAGGGCGTTCA 59.827 55.000 0.00 0.00 0.00 3.18
3419 6602 0.172803 ACGACAGTATCAGGGCGTTC 59.827 55.000 0.00 0.00 0.00 3.95
3420 6603 0.108804 CACGACAGTATCAGGGCGTT 60.109 55.000 0.00 0.00 0.00 4.84
3421 6604 1.511305 CACGACAGTATCAGGGCGT 59.489 57.895 0.00 0.00 0.00 5.68
3422 6605 1.226974 CCACGACAGTATCAGGGCG 60.227 63.158 0.00 0.00 0.00 6.13
3423 6606 0.103208 CTCCACGACAGTATCAGGGC 59.897 60.000 0.00 0.00 0.00 5.19
3424 6607 0.747255 CCTCCACGACAGTATCAGGG 59.253 60.000 0.00 0.00 0.00 4.45
3425 6608 0.747255 CCCTCCACGACAGTATCAGG 59.253 60.000 0.00 0.00 0.00 3.86
3426 6609 0.103208 GCCCTCCACGACAGTATCAG 59.897 60.000 0.00 0.00 0.00 2.90
3427 6610 1.663379 CGCCCTCCACGACAGTATCA 61.663 60.000 0.00 0.00 0.00 2.15
3428 6611 1.065928 CGCCCTCCACGACAGTATC 59.934 63.158 0.00 0.00 0.00 2.24
3429 6612 2.423898 CCGCCCTCCACGACAGTAT 61.424 63.158 0.00 0.00 0.00 2.12
3430 6613 3.066190 CCGCCCTCCACGACAGTA 61.066 66.667 0.00 0.00 0.00 2.74
3432 6615 4.742201 CACCGCCCTCCACGACAG 62.742 72.222 0.00 0.00 0.00 3.51
3452 6635 3.013990 GCGATCTCGACGTGCTCG 61.014 66.667 16.20 16.20 44.44 5.03
3453 6636 3.013990 CGCGATCTCGACGTGCTC 61.014 66.667 0.00 0.00 43.02 4.26
3456 6639 3.598562 GTGCGCGATCTCGACGTG 61.599 66.667 12.10 3.38 43.02 4.49
3457 6640 4.831307 GGTGCGCGATCTCGACGT 62.831 66.667 12.10 0.00 43.02 4.34
3476 6659 4.776322 TCCGCCTTGATGCCGGTG 62.776 66.667 1.90 0.00 42.48 4.94
3477 6660 4.473520 CTCCGCCTTGATGCCGGT 62.474 66.667 1.90 0.00 42.48 5.28
3478 6661 3.466791 ATCTCCGCCTTGATGCCGG 62.467 63.158 0.00 0.00 43.21 6.13
3479 6662 1.958205 GATCTCCGCCTTGATGCCG 60.958 63.158 0.00 0.00 0.00 5.69
3480 6663 1.146930 TGATCTCCGCCTTGATGCC 59.853 57.895 0.00 0.00 0.00 4.40
3481 6664 1.162800 GGTGATCTCCGCCTTGATGC 61.163 60.000 0.00 0.00 42.19 3.91
3482 6665 0.533755 GGGTGATCTCCGCCTTGATG 60.534 60.000 7.70 0.00 44.83 3.07
3483 6666 0.982852 TGGGTGATCTCCGCCTTGAT 60.983 55.000 7.70 0.00 44.83 2.57
3484 6667 1.612146 TGGGTGATCTCCGCCTTGA 60.612 57.895 7.70 0.00 44.83 3.02
3485 6668 1.153289 CTGGGTGATCTCCGCCTTG 60.153 63.158 7.70 0.00 44.83 3.61
3486 6669 3.036429 GCTGGGTGATCTCCGCCTT 62.036 63.158 7.70 0.00 44.83 4.35
3487 6670 3.474570 GCTGGGTGATCTCCGCCT 61.475 66.667 7.70 0.00 44.83 5.52
3488 6671 3.474570 AGCTGGGTGATCTCCGCC 61.475 66.667 7.70 0.00 44.72 6.13
3489 6672 2.202987 CAGCTGGGTGATCTCCGC 60.203 66.667 5.57 6.65 0.00 5.54
3490 6673 2.202987 GCAGCTGGGTGATCTCCG 60.203 66.667 17.12 0.00 0.00 4.63
3491 6674 3.318191 AGCAGCTGGGTGATCTCC 58.682 61.111 17.12 5.18 0.00 3.71
3499 6682 3.390183 TATCCGTGCAGCAGCTGGG 62.390 63.158 24.13 16.28 42.74 4.45
3500 6683 2.176273 GTATCCGTGCAGCAGCTGG 61.176 63.158 24.13 7.38 42.74 4.85
3501 6684 2.520039 CGTATCCGTGCAGCAGCTG 61.520 63.158 18.93 18.93 42.74 4.24
3502 6685 2.202797 CGTATCCGTGCAGCAGCT 60.203 61.111 1.76 0.00 42.74 4.24
3503 6686 3.929948 GCGTATCCGTGCAGCAGC 61.930 66.667 0.00 0.00 36.40 5.25
3504 6687 3.620428 CGCGTATCCGTGCAGCAG 61.620 66.667 0.00 0.00 37.82 4.24
3549 6732 2.371259 GCAGGGAGGAGGAGGAACC 61.371 68.421 0.00 0.00 39.35 3.62
3550 6733 2.371259 GGCAGGGAGGAGGAGGAAC 61.371 68.421 0.00 0.00 0.00 3.62
3557 6740 3.795041 CAGGCAGGCAGGGAGGAG 61.795 72.222 0.00 0.00 0.00 3.69
3560 6743 3.795041 CTCCAGGCAGGCAGGGAG 61.795 72.222 17.04 17.04 40.82 4.30
3603 6786 3.532155 CTCCTCCTCTTCCGGCGG 61.532 72.222 22.51 22.51 0.00 6.13
3604 6787 3.532155 CCTCCTCCTCTTCCGGCG 61.532 72.222 0.00 0.00 0.00 6.46
3605 6788 3.855853 GCCTCCTCCTCTTCCGGC 61.856 72.222 0.00 0.00 0.00 6.13
3606 6789 3.157949 GGCCTCCTCCTCTTCCGG 61.158 72.222 0.00 0.00 0.00 5.14
3607 6790 3.532155 CGGCCTCCTCCTCTTCCG 61.532 72.222 0.00 0.00 0.00 4.30
3608 6791 3.157949 CCGGCCTCCTCCTCTTCC 61.158 72.222 0.00 0.00 0.00 3.46
3609 6792 3.157949 CCCGGCCTCCTCCTCTTC 61.158 72.222 0.00 0.00 0.00 2.87
3622 6805 3.551496 TTGTTCTGCCTCTGCCCGG 62.551 63.158 0.00 0.00 36.33 5.73
3623 6806 2.032528 TTGTTCTGCCTCTGCCCG 59.967 61.111 0.00 0.00 36.33 6.13
3624 6807 0.250901 TTCTTGTTCTGCCTCTGCCC 60.251 55.000 0.00 0.00 36.33 5.36
3625 6808 1.163554 CTTCTTGTTCTGCCTCTGCC 58.836 55.000 0.00 0.00 36.33 4.85
3626 6809 0.520847 GCTTCTTGTTCTGCCTCTGC 59.479 55.000 0.00 0.00 38.26 4.26
3627 6810 0.795085 CGCTTCTTGTTCTGCCTCTG 59.205 55.000 0.00 0.00 0.00 3.35
3628 6811 0.681733 TCGCTTCTTGTTCTGCCTCT 59.318 50.000 0.00 0.00 0.00 3.69
3629 6812 1.512926 TTCGCTTCTTGTTCTGCCTC 58.487 50.000 0.00 0.00 0.00 4.70
3630 6813 1.876156 CTTTCGCTTCTTGTTCTGCCT 59.124 47.619 0.00 0.00 0.00 4.75
3631 6814 1.664302 GCTTTCGCTTCTTGTTCTGCC 60.664 52.381 0.00 0.00 0.00 4.85
3632 6815 1.679514 GCTTTCGCTTCTTGTTCTGC 58.320 50.000 0.00 0.00 0.00 4.26
3633 6816 1.398960 CCGCTTTCGCTTCTTGTTCTG 60.399 52.381 0.00 0.00 0.00 3.02
3634 6817 0.868406 CCGCTTTCGCTTCTTGTTCT 59.132 50.000 0.00 0.00 0.00 3.01
3635 6818 0.865769 TCCGCTTTCGCTTCTTGTTC 59.134 50.000 0.00 0.00 0.00 3.18
3636 6819 1.264288 CTTCCGCTTTCGCTTCTTGTT 59.736 47.619 0.00 0.00 0.00 2.83
3637 6820 0.868406 CTTCCGCTTTCGCTTCTTGT 59.132 50.000 0.00 0.00 0.00 3.16
3638 6821 0.453449 GCTTCCGCTTTCGCTTCTTG 60.453 55.000 0.00 0.00 0.00 3.02
3639 6822 1.578206 GGCTTCCGCTTTCGCTTCTT 61.578 55.000 0.00 0.00 36.09 2.52
3640 6823 2.035442 GGCTTCCGCTTTCGCTTCT 61.035 57.895 0.00 0.00 36.09 2.85
3641 6824 2.481009 GGCTTCCGCTTTCGCTTC 59.519 61.111 0.00 0.00 36.09 3.86
3642 6825 3.423154 CGGCTTCCGCTTTCGCTT 61.423 61.111 0.00 0.00 41.17 4.68
3691 6874 4.373116 TGGGCTGCTCGTCGAACC 62.373 66.667 0.00 0.00 0.00 3.62
3692 6875 2.811317 CTGGGCTGCTCGTCGAAC 60.811 66.667 0.00 0.00 0.00 3.95
3693 6876 4.069232 CCTGGGCTGCTCGTCGAA 62.069 66.667 0.00 0.00 0.00 3.71
3695 6878 4.379243 AACCTGGGCTGCTCGTCG 62.379 66.667 0.00 0.00 0.00 5.12
3696 6879 2.435059 GAACCTGGGCTGCTCGTC 60.435 66.667 0.00 0.00 0.00 4.20
3697 6880 2.520536 AAGAACCTGGGCTGCTCGT 61.521 57.895 0.00 0.00 0.00 4.18
3698 6881 2.037136 CAAGAACCTGGGCTGCTCG 61.037 63.158 0.00 0.00 0.00 5.03
3699 6882 2.338785 GCAAGAACCTGGGCTGCTC 61.339 63.158 0.00 0.00 0.00 4.26
3700 6883 2.282745 GCAAGAACCTGGGCTGCT 60.283 61.111 0.00 0.00 0.00 4.24
3701 6884 3.376918 GGCAAGAACCTGGGCTGC 61.377 66.667 0.00 0.81 0.00 5.25
3702 6885 2.677875 GGGCAAGAACCTGGGCTG 60.678 66.667 0.00 0.00 30.08 4.85
3703 6886 3.984732 GGGGCAAGAACCTGGGCT 61.985 66.667 0.00 0.00 30.08 5.19
3707 6890 2.672996 CACCGGGGCAAGAACCTG 60.673 66.667 6.32 0.00 0.00 4.00
3708 6891 4.660938 GCACCGGGGCAAGAACCT 62.661 66.667 27.59 0.00 0.00 3.50
3743 6926 0.526662 GCTACTATGATCCCGTCCGG 59.473 60.000 0.00 0.00 0.00 5.14
3744 6927 0.526662 GGCTACTATGATCCCGTCCG 59.473 60.000 0.00 0.00 0.00 4.79
3745 6928 0.526662 CGGCTACTATGATCCCGTCC 59.473 60.000 0.00 0.00 34.56 4.79
3746 6929 0.526662 CCGGCTACTATGATCCCGTC 59.473 60.000 0.00 0.00 37.37 4.79
3747 6930 0.111832 TCCGGCTACTATGATCCCGT 59.888 55.000 0.00 0.00 37.37 5.28
3748 6931 1.254026 TTCCGGCTACTATGATCCCG 58.746 55.000 0.00 0.00 38.71 5.14
3749 6932 2.609737 CGTTTCCGGCTACTATGATCCC 60.610 54.545 0.00 0.00 0.00 3.85
3750 6933 2.673833 CGTTTCCGGCTACTATGATCC 58.326 52.381 0.00 0.00 0.00 3.36
3763 6946 3.045492 CACCGTTCCCCGTTTCCG 61.045 66.667 0.00 0.00 33.66 4.30
3764 6947 2.670592 CCACCGTTCCCCGTTTCC 60.671 66.667 0.00 0.00 33.66 3.13
3765 6948 2.670592 CCCACCGTTCCCCGTTTC 60.671 66.667 0.00 0.00 33.66 2.78
3766 6949 4.960866 GCCCACCGTTCCCCGTTT 62.961 66.667 0.00 0.00 33.66 3.60
3784 6967 1.286260 GAATCCGGATCGAGGGACG 59.714 63.158 19.43 0.00 44.09 4.79
3785 6968 0.969894 ATGAATCCGGATCGAGGGAC 59.030 55.000 19.43 4.44 34.58 4.46
3786 6969 1.257743 GATGAATCCGGATCGAGGGA 58.742 55.000 19.43 5.26 36.61 4.20
3787 6970 0.109086 CGATGAATCCGGATCGAGGG 60.109 60.000 19.43 3.84 43.36 4.30
3788 6971 0.881796 TCGATGAATCCGGATCGAGG 59.118 55.000 20.87 9.37 44.13 4.63
3790 6973 0.596577 GGTCGATGAATCCGGATCGA 59.403 55.000 20.87 20.87 46.17 3.59
3791 6974 0.388649 GGGTCGATGAATCCGGATCG 60.389 60.000 19.43 18.10 42.29 3.69
3792 6975 0.388649 CGGGTCGATGAATCCGGATC 60.389 60.000 19.43 11.90 38.93 3.36
3793 6976 1.666011 CGGGTCGATGAATCCGGAT 59.334 57.895 12.38 12.38 38.93 4.18
3794 6977 3.125607 CGGGTCGATGAATCCGGA 58.874 61.111 6.61 6.61 38.93 5.14
3796 6979 0.033504 ATTCCGGGTCGATGAATCCG 59.966 55.000 0.00 0.00 41.90 4.18
3797 6980 1.070134 TGATTCCGGGTCGATGAATCC 59.930 52.381 18.77 4.51 42.26 3.01
3798 6981 2.035961 TCTGATTCCGGGTCGATGAATC 59.964 50.000 0.00 16.52 42.90 2.52
3799 6982 2.039418 TCTGATTCCGGGTCGATGAAT 58.961 47.619 0.00 0.00 0.00 2.57
3800 6983 1.480789 TCTGATTCCGGGTCGATGAA 58.519 50.000 0.00 0.00 0.00 2.57
3801 6984 1.704641 ATCTGATTCCGGGTCGATGA 58.295 50.000 0.00 1.45 0.00 2.92
3802 6985 2.408050 GAATCTGATTCCGGGTCGATG 58.592 52.381 17.62 0.00 33.17 3.84
3803 6986 1.000163 CGAATCTGATTCCGGGTCGAT 60.000 52.381 21.32 5.60 35.89 3.59
3804 6987 0.384309 CGAATCTGATTCCGGGTCGA 59.616 55.000 21.32 3.47 35.89 4.20
3805 6988 0.597637 CCGAATCTGATTCCGGGTCG 60.598 60.000 21.32 11.43 35.89 4.79
3806 6989 0.249911 CCCGAATCTGATTCCGGGTC 60.250 60.000 30.85 11.40 42.69 4.46
3807 6990 0.689745 TCCCGAATCTGATTCCGGGT 60.690 55.000 33.80 8.13 45.24 5.28
3808 6991 0.468226 TTCCCGAATCTGATTCCGGG 59.532 55.000 32.07 32.07 45.80 5.73
3809 6992 1.134521 TGTTCCCGAATCTGATTCCGG 60.135 52.381 23.52 23.52 38.49 5.14
3810 6993 2.309528 TGTTCCCGAATCTGATTCCG 57.690 50.000 21.32 15.78 35.89 4.30
3811 6994 2.945668 CCTTGTTCCCGAATCTGATTCC 59.054 50.000 21.32 9.87 35.89 3.01
3812 6995 2.945668 CCCTTGTTCCCGAATCTGATTC 59.054 50.000 18.28 18.28 35.94 2.52
3813 6996 2.308866 ACCCTTGTTCCCGAATCTGATT 59.691 45.455 1.81 1.81 0.00 2.57
3814 6997 1.916181 ACCCTTGTTCCCGAATCTGAT 59.084 47.619 0.00 0.00 0.00 2.90
3815 6998 1.278127 GACCCTTGTTCCCGAATCTGA 59.722 52.381 0.00 0.00 0.00 3.27
3816 6999 1.739067 GACCCTTGTTCCCGAATCTG 58.261 55.000 0.00 0.00 0.00 2.90
3817 7000 0.249398 CGACCCTTGTTCCCGAATCT 59.751 55.000 0.00 0.00 0.00 2.40
3818 7001 0.248289 TCGACCCTTGTTCCCGAATC 59.752 55.000 0.00 0.00 0.00 2.52
3819 7002 0.909623 ATCGACCCTTGTTCCCGAAT 59.090 50.000 0.00 0.00 32.84 3.34
3820 7003 0.688487 AATCGACCCTTGTTCCCGAA 59.312 50.000 0.00 0.00 32.84 4.30
3821 7004 0.248289 GAATCGACCCTTGTTCCCGA 59.752 55.000 0.00 0.00 0.00 5.14
3822 7005 1.082117 CGAATCGACCCTTGTTCCCG 61.082 60.000 0.00 0.00 0.00 5.14
3823 7006 0.743345 CCGAATCGACCCTTGTTCCC 60.743 60.000 3.36 0.00 0.00 3.97
3824 7007 0.036671 ACCGAATCGACCCTTGTTCC 60.037 55.000 3.36 0.00 0.00 3.62
3825 7008 2.660189 TACCGAATCGACCCTTGTTC 57.340 50.000 3.36 0.00 0.00 3.18
3826 7009 2.564062 TCTTACCGAATCGACCCTTGTT 59.436 45.455 3.36 0.00 0.00 2.83
3827 7010 2.173519 TCTTACCGAATCGACCCTTGT 58.826 47.619 3.36 0.00 0.00 3.16
3828 7011 2.953466 TCTTACCGAATCGACCCTTG 57.047 50.000 3.36 0.00 0.00 3.61
3829 7012 3.490419 CGAATCTTACCGAATCGACCCTT 60.490 47.826 3.36 0.00 45.59 3.95
3830 7013 2.034305 CGAATCTTACCGAATCGACCCT 59.966 50.000 3.36 0.00 45.59 4.34
3831 7014 2.033801 TCGAATCTTACCGAATCGACCC 59.966 50.000 3.36 0.00 46.09 4.46
3832 7015 3.344904 TCGAATCTTACCGAATCGACC 57.655 47.619 3.36 0.00 46.09 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.