Multiple sequence alignment - TraesCS2B01G112700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G112700 chr2B 100.000 3983 0 0 1 3983 75964867 75968849 0.000000e+00 7356.0
1 TraesCS2B01G112700 chr2D 96.669 3512 105 8 478 3983 48037795 48034290 0.000000e+00 5827.0
2 TraesCS2B01G112700 chr2D 100.000 28 0 0 3246 3273 26502226 26502253 7.000000e-03 52.8
3 TraesCS2B01G112700 chr2A 94.348 2654 119 20 611 3239 51029893 51032540 0.000000e+00 4041.0
4 TraesCS2B01G112700 chr2A 95.187 748 35 1 3237 3983 51032591 51033338 0.000000e+00 1181.0
5 TraesCS2B01G112700 chr7D 91.011 89 8 0 3253 3341 413234104 413234016 1.940000e-23 121.0
6 TraesCS2B01G112700 chr1D 85.057 87 11 2 3253 3338 493100522 493100607 1.970000e-13 87.9
7 TraesCS2B01G112700 chr1A 82.759 87 13 2 3253 3338 551198379 551198464 4.270000e-10 76.8
8 TraesCS2B01G112700 chr3B 93.617 47 3 0 3249 3295 52160475 52160429 1.990000e-08 71.3
9 TraesCS2B01G112700 chr5B 95.238 42 2 0 3253 3294 375638766 375638725 2.570000e-07 67.6
10 TraesCS2B01G112700 chr6B 94.286 35 2 0 3260 3294 674104630 674104664 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G112700 chr2B 75964867 75968849 3982 False 7356 7356 100.0000 1 3983 1 chr2B.!!$F1 3982
1 TraesCS2B01G112700 chr2D 48034290 48037795 3505 True 5827 5827 96.6690 478 3983 1 chr2D.!!$R1 3505
2 TraesCS2B01G112700 chr2A 51029893 51033338 3445 False 2611 4041 94.7675 611 3983 2 chr2A.!!$F1 3372

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 170 0.106669 GGGGCTCCCACAAGGATAAC 60.107 60.0 7.34 0.0 46.33 1.89 F
1206 1227 0.036732 TCTTGCGGGCACTTGAATCT 59.963 50.0 0.00 0.0 0.00 2.40 F
1224 1245 0.594602 CTGGTACGTGTTCGGAGTCA 59.405 55.0 0.00 0.0 41.85 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1551 1572 0.180642 TACCAAACTCACGGCAACCA 59.819 50.000 0.0 0.0 0.00 3.67 R
2493 2514 1.470979 GCATCAGCTTGCATTCCCTTG 60.471 52.381 5.5 0.0 42.31 3.61 R
3018 3039 2.359230 GTGGCAGAGGCAGGACAC 60.359 66.667 0.0 0.0 43.71 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.418684 TCCAGAGTAAAAAGCCCAGAC 57.581 47.619 0.00 0.00 0.00 3.51
21 22 2.076863 CCAGAGTAAAAAGCCCAGACG 58.923 52.381 0.00 0.00 0.00 4.18
22 23 2.289444 CCAGAGTAAAAAGCCCAGACGA 60.289 50.000 0.00 0.00 0.00 4.20
23 24 3.399330 CAGAGTAAAAAGCCCAGACGAA 58.601 45.455 0.00 0.00 0.00 3.85
24 25 3.813166 CAGAGTAAAAAGCCCAGACGAAA 59.187 43.478 0.00 0.00 0.00 3.46
25 26 4.274950 CAGAGTAAAAAGCCCAGACGAAAA 59.725 41.667 0.00 0.00 0.00 2.29
26 27 4.275196 AGAGTAAAAAGCCCAGACGAAAAC 59.725 41.667 0.00 0.00 0.00 2.43
27 28 2.882927 AAAAAGCCCAGACGAAAACC 57.117 45.000 0.00 0.00 0.00 3.27
28 29 1.770294 AAAAGCCCAGACGAAAACCA 58.230 45.000 0.00 0.00 0.00 3.67
29 30 1.318576 AAAGCCCAGACGAAAACCAG 58.681 50.000 0.00 0.00 0.00 4.00
30 31 0.472471 AAGCCCAGACGAAAACCAGA 59.528 50.000 0.00 0.00 0.00 3.86
31 32 0.472471 AGCCCAGACGAAAACCAGAA 59.528 50.000 0.00 0.00 0.00 3.02
32 33 1.133915 AGCCCAGACGAAAACCAGAAA 60.134 47.619 0.00 0.00 0.00 2.52
33 34 1.266989 GCCCAGACGAAAACCAGAAAG 59.733 52.381 0.00 0.00 0.00 2.62
34 35 1.266989 CCCAGACGAAAACCAGAAAGC 59.733 52.381 0.00 0.00 0.00 3.51
35 36 1.266989 CCAGACGAAAACCAGAAAGCC 59.733 52.381 0.00 0.00 0.00 4.35
36 37 1.946768 CAGACGAAAACCAGAAAGCCA 59.053 47.619 0.00 0.00 0.00 4.75
37 38 2.357637 CAGACGAAAACCAGAAAGCCAA 59.642 45.455 0.00 0.00 0.00 4.52
38 39 3.020984 AGACGAAAACCAGAAAGCCAAA 58.979 40.909 0.00 0.00 0.00 3.28
39 40 3.445805 AGACGAAAACCAGAAAGCCAAAA 59.554 39.130 0.00 0.00 0.00 2.44
40 41 4.081917 AGACGAAAACCAGAAAGCCAAAAA 60.082 37.500 0.00 0.00 0.00 1.94
79 80 4.348198 AAAAATGCTAAAGAGAGCGCTC 57.652 40.909 30.01 30.01 45.99 5.03
80 81 2.680312 AATGCTAAAGAGAGCGCTCA 57.320 45.000 36.87 16.61 45.99 4.26
81 82 2.222007 ATGCTAAAGAGAGCGCTCAG 57.778 50.000 36.87 25.59 45.99 3.35
82 83 0.459237 TGCTAAAGAGAGCGCTCAGC 60.459 55.000 36.87 32.82 45.99 4.26
92 93 3.756677 CGCTCAGCACACGACACG 61.757 66.667 0.00 0.00 0.00 4.49
93 94 2.658593 GCTCAGCACACGACACGT 60.659 61.111 0.00 0.00 42.36 4.49
102 103 2.279252 ACGACACGTGACAGTGGC 60.279 61.111 25.01 7.67 46.30 5.01
104 105 3.938112 GACACGTGACAGTGGCTC 58.062 61.111 25.01 2.24 46.26 4.70
105 106 1.067416 GACACGTGACAGTGGCTCA 59.933 57.895 25.01 0.00 46.26 4.26
106 107 0.529773 GACACGTGACAGTGGCTCAA 60.530 55.000 25.01 0.00 46.26 3.02
107 108 0.810031 ACACGTGACAGTGGCTCAAC 60.810 55.000 25.01 0.00 45.80 3.18
108 109 0.809636 CACGTGACAGTGGCTCAACA 60.810 55.000 10.90 0.00 38.40 3.33
109 110 0.810031 ACGTGACAGTGGCTCAACAC 60.810 55.000 0.00 0.00 41.63 3.32
110 111 0.809636 CGTGACAGTGGCTCAACACA 60.810 55.000 0.00 0.00 43.72 3.72
111 112 1.597742 GTGACAGTGGCTCAACACAT 58.402 50.000 0.00 0.00 43.72 3.21
112 113 1.949525 GTGACAGTGGCTCAACACATT 59.050 47.619 0.00 0.00 43.72 2.71
113 114 2.358898 GTGACAGTGGCTCAACACATTT 59.641 45.455 0.00 0.00 43.72 2.32
114 115 2.618241 TGACAGTGGCTCAACACATTTC 59.382 45.455 0.00 0.00 43.72 2.17
115 116 2.880890 GACAGTGGCTCAACACATTTCT 59.119 45.455 0.00 0.00 43.72 2.52
116 117 3.290710 ACAGTGGCTCAACACATTTCTT 58.709 40.909 0.00 0.00 43.72 2.52
117 118 3.067180 ACAGTGGCTCAACACATTTCTTG 59.933 43.478 0.00 0.00 43.72 3.02
118 119 3.316029 CAGTGGCTCAACACATTTCTTGA 59.684 43.478 0.00 0.00 43.72 3.02
119 120 3.316308 AGTGGCTCAACACATTTCTTGAC 59.684 43.478 0.00 0.00 43.72 3.18
120 121 2.290367 TGGCTCAACACATTTCTTGACG 59.710 45.455 0.00 0.00 0.00 4.35
121 122 2.310577 GCTCAACACATTTCTTGACGC 58.689 47.619 0.00 0.00 0.00 5.19
122 123 2.563976 CTCAACACATTTCTTGACGCG 58.436 47.619 3.53 3.53 0.00 6.01
123 124 1.937223 TCAACACATTTCTTGACGCGT 59.063 42.857 13.85 13.85 0.00 6.01
124 125 2.353269 TCAACACATTTCTTGACGCGTT 59.647 40.909 15.53 0.00 0.00 4.84
125 126 3.105203 CAACACATTTCTTGACGCGTTT 58.895 40.909 15.53 0.00 0.00 3.60
126 127 3.414549 ACACATTTCTTGACGCGTTTT 57.585 38.095 15.53 0.00 0.00 2.43
127 128 3.765026 ACACATTTCTTGACGCGTTTTT 58.235 36.364 15.53 0.00 0.00 1.94
128 129 3.545873 ACACATTTCTTGACGCGTTTTTG 59.454 39.130 15.53 7.42 0.00 2.44
129 130 3.061271 CACATTTCTTGACGCGTTTTTGG 60.061 43.478 15.53 2.64 0.00 3.28
130 131 1.551145 TTTCTTGACGCGTTTTTGGC 58.449 45.000 15.53 0.00 0.00 4.52
131 132 0.248702 TTCTTGACGCGTTTTTGGCC 60.249 50.000 15.53 0.00 0.00 5.36
132 133 1.660264 CTTGACGCGTTTTTGGCCC 60.660 57.895 15.53 0.00 0.00 5.80
133 134 2.343163 CTTGACGCGTTTTTGGCCCA 62.343 55.000 15.53 0.00 0.00 5.36
134 135 2.354188 GACGCGTTTTTGGCCCAC 60.354 61.111 15.53 0.00 0.00 4.61
135 136 3.834447 GACGCGTTTTTGGCCCACC 62.834 63.158 15.53 0.00 0.00 4.61
145 146 3.074788 TGGCCCACCAAAATAACCC 57.925 52.632 0.00 0.00 45.37 4.11
146 147 0.489567 TGGCCCACCAAAATAACCCT 59.510 50.000 0.00 0.00 45.37 4.34
147 148 1.132689 TGGCCCACCAAAATAACCCTT 60.133 47.619 0.00 0.00 45.37 3.95
148 149 1.277842 GGCCCACCAAAATAACCCTTG 59.722 52.381 0.00 0.00 35.26 3.61
149 150 1.338674 GCCCACCAAAATAACCCTTGC 60.339 52.381 0.00 0.00 0.00 4.01
150 151 1.067213 CCCACCAAAATAACCCTTGCG 60.067 52.381 0.00 0.00 0.00 4.85
151 152 1.067213 CCACCAAAATAACCCTTGCGG 60.067 52.381 0.00 0.00 37.81 5.69
162 163 4.659172 CTTGCGGGGCTCCCACAA 62.659 66.667 7.34 11.68 45.83 3.33
163 164 4.659172 TTGCGGGGCTCCCACAAG 62.659 66.667 7.34 0.00 45.83 3.16
166 167 3.411517 CGGGGCTCCCACAAGGAT 61.412 66.667 7.34 0.00 46.33 3.24
167 168 2.070039 CGGGGCTCCCACAAGGATA 61.070 63.158 7.34 0.00 46.33 2.59
168 169 1.632018 CGGGGCTCCCACAAGGATAA 61.632 60.000 7.34 0.00 46.33 1.75
169 170 0.106669 GGGGCTCCCACAAGGATAAC 60.107 60.000 7.34 0.00 46.33 1.89
170 171 0.106669 GGGCTCCCACAAGGATAACC 60.107 60.000 0.00 0.00 46.33 2.85
171 172 0.106669 GGCTCCCACAAGGATAACCC 60.107 60.000 0.00 0.00 46.33 4.11
185 186 5.851418 AGGATAACCCTTAACTACTCCAGT 58.149 41.667 0.00 0.00 44.85 4.00
186 187 6.269974 AGGATAACCCTTAACTACTCCAGTT 58.730 40.000 0.00 0.00 44.85 3.16
187 188 7.425003 AGGATAACCCTTAACTACTCCAGTTA 58.575 38.462 0.00 0.00 43.85 2.24
197 198 6.667558 AACTACTCCAGTTAACTAGTTGCT 57.332 37.500 18.56 12.69 45.93 3.91
198 199 6.667558 ACTACTCCAGTTAACTAGTTGCTT 57.332 37.500 18.56 0.25 31.59 3.91
199 200 7.063934 ACTACTCCAGTTAACTAGTTGCTTT 57.936 36.000 18.56 0.00 31.59 3.51
200 201 7.506971 ACTACTCCAGTTAACTAGTTGCTTTT 58.493 34.615 18.56 0.00 31.59 2.27
201 202 7.991460 ACTACTCCAGTTAACTAGTTGCTTTTT 59.009 33.333 18.56 0.00 31.59 1.94
202 203 9.485206 CTACTCCAGTTAACTAGTTGCTTTTTA 57.515 33.333 18.56 0.00 0.00 1.52
203 204 8.379457 ACTCCAGTTAACTAGTTGCTTTTTAG 57.621 34.615 18.56 9.54 0.00 1.85
204 205 7.444487 ACTCCAGTTAACTAGTTGCTTTTTAGG 59.556 37.037 18.56 11.97 0.00 2.69
205 206 6.713450 TCCAGTTAACTAGTTGCTTTTTAGGG 59.287 38.462 18.56 11.38 0.00 3.53
206 207 6.072119 CCAGTTAACTAGTTGCTTTTTAGGGG 60.072 42.308 18.56 7.81 0.00 4.79
207 208 6.489022 CAGTTAACTAGTTGCTTTTTAGGGGT 59.511 38.462 18.56 0.00 0.00 4.95
208 209 6.489022 AGTTAACTAGTTGCTTTTTAGGGGTG 59.511 38.462 18.56 0.00 0.00 4.61
209 210 4.717279 ACTAGTTGCTTTTTAGGGGTGA 57.283 40.909 0.00 0.00 0.00 4.02
210 211 5.256806 ACTAGTTGCTTTTTAGGGGTGAT 57.743 39.130 0.00 0.00 0.00 3.06
211 212 6.382919 ACTAGTTGCTTTTTAGGGGTGATA 57.617 37.500 0.00 0.00 0.00 2.15
212 213 6.786122 ACTAGTTGCTTTTTAGGGGTGATAA 58.214 36.000 0.00 0.00 0.00 1.75
213 214 5.977489 AGTTGCTTTTTAGGGGTGATAAC 57.023 39.130 0.00 0.00 0.00 1.89
214 215 4.770531 AGTTGCTTTTTAGGGGTGATAACC 59.229 41.667 0.00 0.00 0.00 2.85
215 216 4.390129 TGCTTTTTAGGGGTGATAACCA 57.610 40.909 0.36 0.00 0.00 3.67
216 217 4.941713 TGCTTTTTAGGGGTGATAACCAT 58.058 39.130 0.36 0.00 0.00 3.55
217 218 4.709397 TGCTTTTTAGGGGTGATAACCATG 59.291 41.667 0.36 0.00 0.00 3.66
218 219 4.441495 GCTTTTTAGGGGTGATAACCATGC 60.441 45.833 0.36 0.00 0.00 4.06
219 220 4.601406 TTTTAGGGGTGATAACCATGCT 57.399 40.909 0.36 0.00 0.00 3.79
220 221 4.601406 TTTAGGGGTGATAACCATGCTT 57.399 40.909 0.36 0.00 0.00 3.91
221 222 4.601406 TTAGGGGTGATAACCATGCTTT 57.399 40.909 0.36 0.00 0.00 3.51
222 223 5.718801 TTAGGGGTGATAACCATGCTTTA 57.281 39.130 0.36 0.00 0.00 1.85
223 224 4.814224 AGGGGTGATAACCATGCTTTAT 57.186 40.909 0.36 0.00 0.00 1.40
224 225 5.142806 AGGGGTGATAACCATGCTTTATT 57.857 39.130 0.36 0.00 0.00 1.40
225 226 5.140454 AGGGGTGATAACCATGCTTTATTC 58.860 41.667 0.36 0.00 0.00 1.75
226 227 4.892934 GGGGTGATAACCATGCTTTATTCA 59.107 41.667 0.36 0.00 0.00 2.57
227 228 5.539955 GGGGTGATAACCATGCTTTATTCAT 59.460 40.000 0.36 0.00 0.00 2.57
228 229 6.719370 GGGGTGATAACCATGCTTTATTCATA 59.281 38.462 0.36 0.00 0.00 2.15
229 230 7.232534 GGGGTGATAACCATGCTTTATTCATAA 59.767 37.037 0.36 0.00 0.00 1.90
230 231 8.637986 GGGTGATAACCATGCTTTATTCATAAA 58.362 33.333 0.36 0.00 0.00 1.40
251 252 5.722021 AAAAACCACAAGTCATGGGATAC 57.278 39.130 0.00 0.00 41.97 2.24
252 253 4.380843 AAACCACAAGTCATGGGATACA 57.619 40.909 0.00 0.00 41.97 2.29
253 254 3.350219 ACCACAAGTCATGGGATACAC 57.650 47.619 0.00 0.00 41.97 2.90
254 255 2.642311 ACCACAAGTCATGGGATACACA 59.358 45.455 0.00 0.00 41.97 3.72
255 256 3.266772 ACCACAAGTCATGGGATACACAT 59.733 43.478 0.00 0.00 41.97 3.21
256 257 4.263905 ACCACAAGTCATGGGATACACATT 60.264 41.667 0.00 0.00 41.97 2.71
257 258 4.096833 CCACAAGTCATGGGATACACATTG 59.903 45.833 0.00 0.00 32.54 2.82
258 259 4.096833 CACAAGTCATGGGATACACATTGG 59.903 45.833 0.00 0.00 32.54 3.16
259 260 4.018506 ACAAGTCATGGGATACACATTGGA 60.019 41.667 0.00 0.00 39.74 3.53
260 261 4.156455 AGTCATGGGATACACATTGGAC 57.844 45.455 0.00 0.00 39.74 4.02
261 262 3.117888 AGTCATGGGATACACATTGGACC 60.118 47.826 0.00 0.00 39.74 4.46
262 263 2.849318 TCATGGGATACACATTGGACCA 59.151 45.455 0.00 0.00 39.74 4.02
263 264 3.462954 TCATGGGATACACATTGGACCAT 59.537 43.478 0.00 0.00 39.74 3.55
264 265 3.295585 TGGGATACACATTGGACCATG 57.704 47.619 0.00 0.00 39.74 3.66
265 266 2.091939 TGGGATACACATTGGACCATGG 60.092 50.000 11.19 11.19 39.74 3.66
266 267 2.586425 GGATACACATTGGACCATGGG 58.414 52.381 18.09 0.00 0.00 4.00
267 268 2.174639 GGATACACATTGGACCATGGGA 59.825 50.000 18.09 0.00 0.00 4.37
268 269 3.181429 GGATACACATTGGACCATGGGAT 60.181 47.826 18.09 0.00 0.00 3.85
269 270 2.925966 ACACATTGGACCATGGGATT 57.074 45.000 18.09 0.00 0.00 3.01
270 271 2.459644 ACACATTGGACCATGGGATTG 58.540 47.619 18.09 8.62 0.00 2.67
271 272 2.042842 ACACATTGGACCATGGGATTGA 59.957 45.455 18.09 0.00 0.00 2.57
272 273 2.428171 CACATTGGACCATGGGATTGAC 59.572 50.000 18.09 0.00 0.00 3.18
273 274 2.034124 CATTGGACCATGGGATTGACC 58.966 52.381 18.09 9.64 38.08 4.02
274 275 1.079796 TTGGACCATGGGATTGACCA 58.920 50.000 18.09 12.03 46.24 4.02
275 276 1.079796 TGGACCATGGGATTGACCAA 58.920 50.000 18.09 0.00 45.13 3.67
276 277 1.430853 TGGACCATGGGATTGACCAAA 59.569 47.619 18.09 0.00 45.13 3.28
277 278 1.824852 GGACCATGGGATTGACCAAAC 59.175 52.381 18.09 0.00 45.13 2.93
278 279 2.524306 GACCATGGGATTGACCAAACA 58.476 47.619 18.09 0.00 45.13 2.83
279 280 2.231235 GACCATGGGATTGACCAAACAC 59.769 50.000 18.09 0.00 45.13 3.32
280 281 2.246469 CCATGGGATTGACCAAACACA 58.754 47.619 2.85 0.00 45.13 3.72
281 282 2.029110 CCATGGGATTGACCAAACACAC 60.029 50.000 2.85 0.00 45.13 3.82
282 283 2.443958 TGGGATTGACCAAACACACA 57.556 45.000 0.00 0.00 41.20 3.72
283 284 2.956132 TGGGATTGACCAAACACACAT 58.044 42.857 0.00 0.00 41.20 3.21
284 285 2.627221 TGGGATTGACCAAACACACATG 59.373 45.455 0.00 0.00 41.20 3.21
285 286 2.029110 GGGATTGACCAAACACACATGG 60.029 50.000 0.00 0.00 42.60 3.66
286 287 2.610232 GGATTGACCAAACACACATGGC 60.610 50.000 0.00 0.00 40.51 4.40
287 288 0.383590 TTGACCAAACACACATGGCG 59.616 50.000 0.00 0.00 40.51 5.69
288 289 0.749818 TGACCAAACACACATGGCGT 60.750 50.000 0.00 0.00 40.51 5.68
289 290 0.383949 GACCAAACACACATGGCGTT 59.616 50.000 0.00 0.00 40.51 4.84
290 291 0.383949 ACCAAACACACATGGCGTTC 59.616 50.000 0.00 0.00 40.51 3.95
291 292 0.318614 CCAAACACACATGGCGTTCC 60.319 55.000 0.00 0.00 0.00 3.62
301 302 1.675219 TGGCGTTCCAGTCCTAACC 59.325 57.895 0.00 0.00 37.47 2.85
302 303 1.122632 TGGCGTTCCAGTCCTAACCA 61.123 55.000 0.00 0.00 37.47 3.67
303 304 0.391263 GGCGTTCCAGTCCTAACCAG 60.391 60.000 0.00 0.00 0.00 4.00
304 305 0.606604 GCGTTCCAGTCCTAACCAGA 59.393 55.000 0.00 0.00 0.00 3.86
305 306 1.404315 GCGTTCCAGTCCTAACCAGAG 60.404 57.143 0.00 0.00 0.00 3.35
306 307 1.893801 CGTTCCAGTCCTAACCAGAGT 59.106 52.381 0.00 0.00 0.00 3.24
307 308 2.352814 CGTTCCAGTCCTAACCAGAGTG 60.353 54.545 0.00 0.00 34.95 3.51
312 313 3.665190 CAGTCCTAACCAGAGTGGAAAC 58.335 50.000 0.00 0.00 40.96 2.78
313 314 3.325135 CAGTCCTAACCAGAGTGGAAACT 59.675 47.826 0.00 0.00 40.96 2.66
314 315 3.974642 AGTCCTAACCAGAGTGGAAACTT 59.025 43.478 0.00 0.00 40.96 2.66
315 316 4.065789 GTCCTAACCAGAGTGGAAACTTG 58.934 47.826 0.00 0.00 40.96 3.16
316 317 3.072476 TCCTAACCAGAGTGGAAACTTGG 59.928 47.826 0.00 0.00 40.96 3.61
317 318 1.692411 AACCAGAGTGGAAACTTGGC 58.308 50.000 0.00 0.00 40.96 4.52
318 319 0.846693 ACCAGAGTGGAAACTTGGCT 59.153 50.000 0.00 0.00 40.96 4.75
319 320 2.054799 ACCAGAGTGGAAACTTGGCTA 58.945 47.619 0.00 0.00 40.96 3.93
320 321 2.441750 ACCAGAGTGGAAACTTGGCTAA 59.558 45.455 0.00 0.00 40.96 3.09
321 322 2.814336 CCAGAGTGGAAACTTGGCTAAC 59.186 50.000 0.00 0.00 40.96 2.34
322 323 3.496870 CCAGAGTGGAAACTTGGCTAACT 60.497 47.826 0.00 0.00 40.96 2.24
323 324 4.137543 CAGAGTGGAAACTTGGCTAACTT 58.862 43.478 0.00 0.00 0.00 2.66
324 325 5.305585 CAGAGTGGAAACTTGGCTAACTTA 58.694 41.667 0.00 0.00 0.00 2.24
325 326 5.940470 CAGAGTGGAAACTTGGCTAACTTAT 59.060 40.000 0.00 0.00 0.00 1.73
326 327 5.940470 AGAGTGGAAACTTGGCTAACTTATG 59.060 40.000 0.00 0.00 0.00 1.90
327 328 4.459337 AGTGGAAACTTGGCTAACTTATGC 59.541 41.667 0.00 0.00 0.00 3.14
328 329 3.438781 TGGAAACTTGGCTAACTTATGCG 59.561 43.478 0.00 0.00 0.00 4.73
329 330 3.426323 GAAACTTGGCTAACTTATGCGC 58.574 45.455 0.00 0.00 0.00 6.09
330 331 2.403252 ACTTGGCTAACTTATGCGCT 57.597 45.000 9.73 0.00 0.00 5.92
331 332 2.711542 ACTTGGCTAACTTATGCGCTT 58.288 42.857 9.73 4.59 0.00 4.68
332 333 2.678336 ACTTGGCTAACTTATGCGCTTC 59.322 45.455 9.73 0.00 0.00 3.86
333 334 2.691409 TGGCTAACTTATGCGCTTCT 57.309 45.000 9.73 0.00 0.00 2.85
334 335 3.812156 TGGCTAACTTATGCGCTTCTA 57.188 42.857 9.73 0.00 0.00 2.10
335 336 4.336889 TGGCTAACTTATGCGCTTCTAT 57.663 40.909 9.73 0.00 0.00 1.98
336 337 4.058124 TGGCTAACTTATGCGCTTCTATG 58.942 43.478 9.73 3.01 0.00 2.23
337 338 4.058817 GGCTAACTTATGCGCTTCTATGT 58.941 43.478 9.73 3.64 0.00 2.29
338 339 4.511826 GGCTAACTTATGCGCTTCTATGTT 59.488 41.667 9.73 13.61 0.00 2.71
339 340 5.333416 GGCTAACTTATGCGCTTCTATGTTC 60.333 44.000 9.73 2.56 0.00 3.18
340 341 5.234329 GCTAACTTATGCGCTTCTATGTTCA 59.766 40.000 9.73 0.00 0.00 3.18
341 342 5.470845 AACTTATGCGCTTCTATGTTCAC 57.529 39.130 9.73 0.00 0.00 3.18
342 343 3.871594 ACTTATGCGCTTCTATGTTCACC 59.128 43.478 9.73 0.00 0.00 4.02
343 344 2.698855 ATGCGCTTCTATGTTCACCT 57.301 45.000 9.73 0.00 0.00 4.00
344 345 2.472695 TGCGCTTCTATGTTCACCTT 57.527 45.000 9.73 0.00 0.00 3.50
345 346 3.603158 TGCGCTTCTATGTTCACCTTA 57.397 42.857 9.73 0.00 0.00 2.69
346 347 3.259064 TGCGCTTCTATGTTCACCTTAC 58.741 45.455 9.73 0.00 0.00 2.34
347 348 2.281762 GCGCTTCTATGTTCACCTTACG 59.718 50.000 0.00 0.00 0.00 3.18
348 349 3.766151 CGCTTCTATGTTCACCTTACGA 58.234 45.455 0.00 0.00 0.00 3.43
349 350 3.546670 CGCTTCTATGTTCACCTTACGAC 59.453 47.826 0.00 0.00 0.00 4.34
350 351 4.674623 CGCTTCTATGTTCACCTTACGACT 60.675 45.833 0.00 0.00 0.00 4.18
351 352 5.169295 GCTTCTATGTTCACCTTACGACTT 58.831 41.667 0.00 0.00 0.00 3.01
352 353 5.638234 GCTTCTATGTTCACCTTACGACTTT 59.362 40.000 0.00 0.00 0.00 2.66
353 354 6.183360 GCTTCTATGTTCACCTTACGACTTTC 60.183 42.308 0.00 0.00 0.00 2.62
354 355 6.335471 TCTATGTTCACCTTACGACTTTCA 57.665 37.500 0.00 0.00 0.00 2.69
355 356 6.751157 TCTATGTTCACCTTACGACTTTCAA 58.249 36.000 0.00 0.00 0.00 2.69
356 357 7.211573 TCTATGTTCACCTTACGACTTTCAAA 58.788 34.615 0.00 0.00 0.00 2.69
357 358 6.687081 ATGTTCACCTTACGACTTTCAAAA 57.313 33.333 0.00 0.00 0.00 2.44
358 359 6.114221 TGTTCACCTTACGACTTTCAAAAG 57.886 37.500 0.97 0.97 41.73 2.27
404 405 3.810310 TTTTTCCGATTTGCCAACACT 57.190 38.095 0.00 0.00 0.00 3.55
405 406 3.810310 TTTTCCGATTTGCCAACACTT 57.190 38.095 0.00 0.00 0.00 3.16
406 407 3.810310 TTTCCGATTTGCCAACACTTT 57.190 38.095 0.00 0.00 0.00 2.66
407 408 4.920640 TTTCCGATTTGCCAACACTTTA 57.079 36.364 0.00 0.00 0.00 1.85
408 409 5.461032 TTTCCGATTTGCCAACACTTTAT 57.539 34.783 0.00 0.00 0.00 1.40
409 410 5.461032 TTCCGATTTGCCAACACTTTATT 57.539 34.783 0.00 0.00 0.00 1.40
410 411 4.804108 TCCGATTTGCCAACACTTTATTG 58.196 39.130 0.00 0.00 0.00 1.90
411 412 4.520874 TCCGATTTGCCAACACTTTATTGA 59.479 37.500 0.00 0.00 0.00 2.57
412 413 4.621034 CCGATTTGCCAACACTTTATTGAC 59.379 41.667 0.00 0.00 0.00 3.18
413 414 4.621034 CGATTTGCCAACACTTTATTGACC 59.379 41.667 0.00 0.00 0.00 4.02
414 415 5.537188 GATTTGCCAACACTTTATTGACCA 58.463 37.500 0.00 0.00 0.00 4.02
415 416 5.543507 TTTGCCAACACTTTATTGACCAT 57.456 34.783 0.00 0.00 0.00 3.55
416 417 6.656632 TTTGCCAACACTTTATTGACCATA 57.343 33.333 0.00 0.00 0.00 2.74
417 418 6.656632 TTGCCAACACTTTATTGACCATAA 57.343 33.333 0.00 0.00 0.00 1.90
418 419 6.656632 TGCCAACACTTTATTGACCATAAA 57.343 33.333 0.00 0.00 36.18 1.40
419 420 7.055667 TGCCAACACTTTATTGACCATAAAA 57.944 32.000 0.00 0.00 36.97 1.52
420 421 7.500992 TGCCAACACTTTATTGACCATAAAAA 58.499 30.769 0.00 0.00 36.97 1.94
421 422 8.153550 TGCCAACACTTTATTGACCATAAAAAT 58.846 29.630 0.00 0.00 36.97 1.82
422 423 8.442384 GCCAACACTTTATTGACCATAAAAATG 58.558 33.333 0.00 0.00 36.97 2.32
423 424 8.442384 CCAACACTTTATTGACCATAAAAATGC 58.558 33.333 0.00 0.00 36.97 3.56
424 425 9.206870 CAACACTTTATTGACCATAAAAATGCT 57.793 29.630 0.00 0.00 36.97 3.79
425 426 8.986477 ACACTTTATTGACCATAAAAATGCTC 57.014 30.769 0.00 0.00 36.97 4.26
426 427 8.584157 ACACTTTATTGACCATAAAAATGCTCA 58.416 29.630 0.00 0.00 36.97 4.26
427 428 9.421806 CACTTTATTGACCATAAAAATGCTCAA 57.578 29.630 0.10 0.10 36.97 3.02
428 429 9.995003 ACTTTATTGACCATAAAAATGCTCAAA 57.005 25.926 1.45 0.00 36.97 2.69
430 431 9.434420 TTTATTGACCATAAAAATGCTCAAAGG 57.566 29.630 1.45 0.00 34.86 3.11
431 432 6.662865 TTGACCATAAAAATGCTCAAAGGA 57.337 33.333 0.00 0.00 0.00 3.36
432 433 6.662865 TGACCATAAAAATGCTCAAAGGAA 57.337 33.333 0.00 0.00 0.00 3.36
433 434 7.243604 TGACCATAAAAATGCTCAAAGGAAT 57.756 32.000 0.00 0.00 0.00 3.01
434 435 8.359875 TGACCATAAAAATGCTCAAAGGAATA 57.640 30.769 0.00 0.00 0.00 1.75
435 436 8.250332 TGACCATAAAAATGCTCAAAGGAATAC 58.750 33.333 0.00 0.00 0.00 1.89
436 437 8.133024 ACCATAAAAATGCTCAAAGGAATACA 57.867 30.769 0.00 0.00 0.00 2.29
437 438 8.253113 ACCATAAAAATGCTCAAAGGAATACAG 58.747 33.333 0.00 0.00 0.00 2.74
438 439 7.707893 CCATAAAAATGCTCAAAGGAATACAGG 59.292 37.037 0.00 0.00 0.00 4.00
439 440 6.670695 AAAAATGCTCAAAGGAATACAGGT 57.329 33.333 0.00 0.00 0.00 4.00
440 441 5.904362 AAATGCTCAAAGGAATACAGGTC 57.096 39.130 0.00 0.00 0.00 3.85
441 442 3.350219 TGCTCAAAGGAATACAGGTCC 57.650 47.619 0.00 0.00 35.17 4.46
442 443 2.026262 TGCTCAAAGGAATACAGGTCCC 60.026 50.000 0.00 0.00 35.59 4.46
443 444 2.239907 GCTCAAAGGAATACAGGTCCCT 59.760 50.000 0.00 0.00 35.59 4.20
444 445 3.308473 GCTCAAAGGAATACAGGTCCCTT 60.308 47.826 0.00 0.00 40.46 3.95
445 446 4.811063 GCTCAAAGGAATACAGGTCCCTTT 60.811 45.833 0.00 0.00 46.54 3.11
446 447 5.325239 CTCAAAGGAATACAGGTCCCTTTT 58.675 41.667 0.00 0.00 44.09 2.27
447 448 5.711698 TCAAAGGAATACAGGTCCCTTTTT 58.288 37.500 0.00 0.00 44.09 1.94
472 473 4.624913 TGAGAATCAGGAATACAGGTCCT 58.375 43.478 0.00 0.00 46.92 3.85
473 474 5.777449 TGAGAATCAGGAATACAGGTCCTA 58.223 41.667 0.00 0.00 44.00 2.94
474 475 6.385443 TGAGAATCAGGAATACAGGTCCTAT 58.615 40.000 0.00 0.00 44.00 2.57
475 476 6.495181 TGAGAATCAGGAATACAGGTCCTATC 59.505 42.308 0.00 0.00 44.00 2.08
476 477 5.782845 AGAATCAGGAATACAGGTCCTATCC 59.217 44.000 0.00 0.00 44.00 2.59
477 478 4.552883 TCAGGAATACAGGTCCTATCCA 57.447 45.455 12.34 0.00 44.00 3.41
478 479 4.483950 TCAGGAATACAGGTCCTATCCAG 58.516 47.826 12.34 6.61 44.00 3.86
479 480 3.007398 CAGGAATACAGGTCCTATCCAGC 59.993 52.174 12.34 0.00 44.00 4.85
480 481 2.303311 GGAATACAGGTCCTATCCAGCC 59.697 54.545 0.00 0.00 31.94 4.85
481 482 2.031495 ATACAGGTCCTATCCAGCCC 57.969 55.000 0.00 0.00 0.00 5.19
482 483 0.941963 TACAGGTCCTATCCAGCCCT 59.058 55.000 0.00 0.00 0.00 5.19
483 484 0.399233 ACAGGTCCTATCCAGCCCTC 60.399 60.000 0.00 0.00 0.00 4.30
484 485 1.124477 CAGGTCCTATCCAGCCCTCC 61.124 65.000 0.00 0.00 0.00 4.30
485 486 2.210711 GGTCCTATCCAGCCCTCCG 61.211 68.421 0.00 0.00 0.00 4.63
486 487 1.457831 GTCCTATCCAGCCCTCCGT 60.458 63.158 0.00 0.00 0.00 4.69
487 488 1.457643 TCCTATCCAGCCCTCCGTG 60.458 63.158 0.00 0.00 0.00 4.94
488 489 1.762460 CCTATCCAGCCCTCCGTGT 60.762 63.158 0.00 0.00 0.00 4.49
489 490 1.742768 CTATCCAGCCCTCCGTGTC 59.257 63.158 0.00 0.00 0.00 3.67
490 491 2.076622 CTATCCAGCCCTCCGTGTCG 62.077 65.000 0.00 0.00 0.00 4.35
515 516 2.226330 TCCACAAAATGAACAGACGGG 58.774 47.619 0.00 0.00 0.00 5.28
517 518 0.958822 ACAAAATGAACAGACGGGCC 59.041 50.000 0.00 0.00 0.00 5.80
520 521 0.322322 AAATGAACAGACGGGCCGTA 59.678 50.000 34.29 16.42 41.37 4.02
522 523 0.968901 ATGAACAGACGGGCCGTAGA 60.969 55.000 34.29 12.19 41.37 2.59
536 537 0.109086 CGTAGAGGGTCAGCACACAG 60.109 60.000 0.00 0.00 0.00 3.66
606 608 3.838795 AAACTCGATCGCGCACGC 61.839 61.111 11.09 4.64 39.84 5.34
710 720 2.091541 CGCTCACCATTTACCACCATT 58.908 47.619 0.00 0.00 0.00 3.16
748 758 2.608988 CCTCCTCCCACAGCACCT 60.609 66.667 0.00 0.00 0.00 4.00
1060 1081 1.088340 CAGGCTCTGCATTCTCCACG 61.088 60.000 0.00 0.00 0.00 4.94
1127 1148 2.879070 GCGATGATGCCACTGCGAG 61.879 63.158 0.00 0.00 41.78 5.03
1206 1227 0.036732 TCTTGCGGGCACTTGAATCT 59.963 50.000 0.00 0.00 0.00 2.40
1224 1245 0.594602 CTGGTACGTGTTCGGAGTCA 59.405 55.000 0.00 0.00 41.85 3.41
1299 1320 3.382832 CGGGGCTTGTCGGACTCT 61.383 66.667 9.88 0.00 0.00 3.24
1395 1416 2.565210 TTGTGAGCTTGCTGTTTGTG 57.435 45.000 0.00 0.00 0.00 3.33
1446 1467 2.664081 GGGGACAGTGAGGAGCCAG 61.664 68.421 0.00 0.00 0.00 4.85
1551 1572 4.186926 CGTTTGATGAGATGGTCATGTCT 58.813 43.478 9.08 0.00 46.64 3.41
1632 1653 4.161189 TGTTGCTTTGATTTGGTGGAGAAA 59.839 37.500 0.00 0.00 0.00 2.52
1745 1766 1.552792 GCTTGTAGAGGAGCTTCTGGT 59.447 52.381 0.00 0.00 36.01 4.00
1764 1785 5.044919 TCTGGTTGACATGGATAGATTTGGT 60.045 40.000 0.00 0.00 0.00 3.67
1785 1806 3.297134 TGTTCTCCAGATATTTGGGCC 57.703 47.619 12.16 0.00 38.81 5.80
1840 1861 2.715046 ACAGGTTACATGATGCACTGG 58.285 47.619 3.40 0.00 0.00 4.00
2079 2100 5.591877 GGCATCAAGGATGTTAAGTCTGAAT 59.408 40.000 7.92 0.00 41.60 2.57
2475 2496 3.519510 AGGTAAAATCTGCACTGGAGCTA 59.480 43.478 0.00 0.00 34.99 3.32
2493 2514 6.772716 TGGAGCTATTCAAGGAAATGGATTAC 59.227 38.462 0.00 0.00 0.00 1.89
2547 2568 4.080638 GGGACTCTGATCAATGGTCTTTCT 60.081 45.833 16.54 0.00 0.00 2.52
2720 2741 6.418101 TGATTCAGAAGGAAATCTTACCTGG 58.582 40.000 0.00 0.00 39.39 4.45
2782 2803 1.353694 ACTCAAGAGCAATGGAAGCCT 59.646 47.619 0.00 0.00 0.00 4.58
3018 3039 3.133183 GGAGAGGTTTAGCCACTAGAAGG 59.867 52.174 0.00 0.00 38.32 3.46
3346 3421 3.329929 ACGGAGGGAGTAATTGTGAAC 57.670 47.619 0.00 0.00 0.00 3.18
3380 3455 3.941483 CTGTTGAACAAGTGGACTGTCTT 59.059 43.478 7.85 0.00 0.00 3.01
3381 3456 4.331968 TGTTGAACAAGTGGACTGTCTTT 58.668 39.130 7.85 0.00 0.00 2.52
3382 3457 5.492895 TGTTGAACAAGTGGACTGTCTTTA 58.507 37.500 7.85 0.00 0.00 1.85
3476 3552 9.599866 CTGAAGACATACACCTGATAAACATTA 57.400 33.333 0.00 0.00 0.00 1.90
3581 3657 6.018016 TCTCGTACATGCATATTTGTCCAATG 60.018 38.462 0.00 0.00 0.00 2.82
3621 3697 5.690865 TCTAAAAATCACAGGTGTGGTCTT 58.309 37.500 10.18 3.61 45.65 3.01
3633 3709 3.624861 GGTGTGGTCTTCAATGCATCTAG 59.375 47.826 0.00 0.00 0.00 2.43
3658 3734 4.278419 ACAAGTTTAATGTTGGTCCTGAGC 59.722 41.667 0.00 0.00 0.00 4.26
3703 3779 1.803366 GCAAAGCTGCTGCCTTCAGT 61.803 55.000 12.44 0.00 45.74 3.41
3790 3866 9.167311 GTATACAGTGAAAGAGAACATTTCCAT 57.833 33.333 0.00 0.00 36.11 3.41
3916 3992 4.577693 ACATCAGGTGCATCACATATGTTC 59.422 41.667 5.37 0.00 35.86 3.18
3945 4021 7.875554 AGCAGCTAGGTTTAGAAGAATATAAGC 59.124 37.037 0.00 0.00 0.00 3.09
3952 4028 8.214364 AGGTTTAGAAGAATATAAGCCTGAAGG 58.786 37.037 0.30 0.00 40.03 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.289444 CGTCTGGGCTTTTTACTCTGGA 60.289 50.000 0.00 0.00 0.00 3.86
1 2 2.076863 CGTCTGGGCTTTTTACTCTGG 58.923 52.381 0.00 0.00 0.00 3.86
3 4 3.764237 TTCGTCTGGGCTTTTTACTCT 57.236 42.857 0.00 0.00 0.00 3.24
5 6 3.317149 GGTTTTCGTCTGGGCTTTTTACT 59.683 43.478 0.00 0.00 0.00 2.24
6 7 3.067040 TGGTTTTCGTCTGGGCTTTTTAC 59.933 43.478 0.00 0.00 0.00 2.01
7 8 3.288964 TGGTTTTCGTCTGGGCTTTTTA 58.711 40.909 0.00 0.00 0.00 1.52
8 9 2.100749 CTGGTTTTCGTCTGGGCTTTTT 59.899 45.455 0.00 0.00 0.00 1.94
9 10 1.681264 CTGGTTTTCGTCTGGGCTTTT 59.319 47.619 0.00 0.00 0.00 2.27
10 11 1.133915 TCTGGTTTTCGTCTGGGCTTT 60.134 47.619 0.00 0.00 0.00 3.51
11 12 0.472471 TCTGGTTTTCGTCTGGGCTT 59.528 50.000 0.00 0.00 0.00 4.35
12 13 0.472471 TTCTGGTTTTCGTCTGGGCT 59.528 50.000 0.00 0.00 0.00 5.19
13 14 1.266989 CTTTCTGGTTTTCGTCTGGGC 59.733 52.381 0.00 0.00 0.00 5.36
14 15 1.266989 GCTTTCTGGTTTTCGTCTGGG 59.733 52.381 0.00 0.00 0.00 4.45
17 18 2.341846 TGGCTTTCTGGTTTTCGTCT 57.658 45.000 0.00 0.00 0.00 4.18
18 19 3.430333 TTTGGCTTTCTGGTTTTCGTC 57.570 42.857 0.00 0.00 0.00 4.20
19 20 3.878160 TTTTGGCTTTCTGGTTTTCGT 57.122 38.095 0.00 0.00 0.00 3.85
58 59 3.753272 TGAGCGCTCTCTTTAGCATTTTT 59.247 39.130 35.27 0.00 42.91 1.94
59 60 3.338249 TGAGCGCTCTCTTTAGCATTTT 58.662 40.909 35.27 0.00 42.91 1.82
60 61 2.935201 CTGAGCGCTCTCTTTAGCATTT 59.065 45.455 35.27 0.00 42.91 2.32
61 62 2.548875 CTGAGCGCTCTCTTTAGCATT 58.451 47.619 35.27 0.00 42.91 3.56
62 63 1.805871 GCTGAGCGCTCTCTTTAGCAT 60.806 52.381 35.27 0.00 42.91 3.79
63 64 0.459237 GCTGAGCGCTCTCTTTAGCA 60.459 55.000 35.27 14.49 42.91 3.49
64 65 0.459237 TGCTGAGCGCTCTCTTTAGC 60.459 55.000 35.27 32.14 40.03 3.09
65 66 1.276415 GTGCTGAGCGCTCTCTTTAG 58.724 55.000 35.27 24.91 40.03 1.85
66 67 0.603065 TGTGCTGAGCGCTCTCTTTA 59.397 50.000 35.27 16.10 40.03 1.85
67 68 0.948141 GTGTGCTGAGCGCTCTCTTT 60.948 55.000 35.27 0.52 40.03 2.52
68 69 1.373999 GTGTGCTGAGCGCTCTCTT 60.374 57.895 35.27 1.43 40.03 2.85
69 70 2.261052 GTGTGCTGAGCGCTCTCT 59.739 61.111 35.27 1.90 40.03 3.10
70 71 3.177920 CGTGTGCTGAGCGCTCTC 61.178 66.667 35.27 26.31 40.03 3.20
71 72 3.674523 TCGTGTGCTGAGCGCTCT 61.675 61.111 35.27 3.28 40.03 4.09
72 73 3.474034 GTCGTGTGCTGAGCGCTC 61.474 66.667 30.42 30.42 40.03 5.03
73 74 4.284860 TGTCGTGTGCTGAGCGCT 62.285 61.111 19.57 11.27 40.03 5.92
74 75 4.064491 GTGTCGTGTGCTGAGCGC 62.064 66.667 11.70 11.70 39.75 5.92
75 76 3.756677 CGTGTCGTGTGCTGAGCG 61.757 66.667 0.00 0.00 0.00 5.03
76 77 2.658593 ACGTGTCGTGTGCTGAGC 60.659 61.111 0.00 0.00 39.18 4.26
85 86 2.279252 GCCACTGTCACGTGTCGT 60.279 61.111 16.51 9.63 42.36 4.34
86 87 2.016704 GAGCCACTGTCACGTGTCG 61.017 63.158 16.51 9.01 33.07 4.35
87 88 0.529773 TTGAGCCACTGTCACGTGTC 60.530 55.000 16.51 10.98 33.07 3.67
88 89 0.810031 GTTGAGCCACTGTCACGTGT 60.810 55.000 16.51 0.00 33.07 4.49
89 90 0.809636 TGTTGAGCCACTGTCACGTG 60.810 55.000 9.94 9.94 34.71 4.49
90 91 0.810031 GTGTTGAGCCACTGTCACGT 60.810 55.000 0.00 0.00 32.50 4.49
91 92 0.809636 TGTGTTGAGCCACTGTCACG 60.810 55.000 0.00 0.00 36.30 4.35
92 93 1.597742 ATGTGTTGAGCCACTGTCAC 58.402 50.000 0.00 0.00 36.30 3.67
93 94 2.346766 AATGTGTTGAGCCACTGTCA 57.653 45.000 0.00 0.00 36.30 3.58
94 95 2.880890 AGAAATGTGTTGAGCCACTGTC 59.119 45.455 0.00 0.00 36.30 3.51
95 96 2.936202 AGAAATGTGTTGAGCCACTGT 58.064 42.857 0.00 0.00 36.30 3.55
96 97 3.316029 TCAAGAAATGTGTTGAGCCACTG 59.684 43.478 0.00 0.00 32.38 3.66
97 98 3.316308 GTCAAGAAATGTGTTGAGCCACT 59.684 43.478 0.00 0.00 37.68 4.00
98 99 3.632189 GTCAAGAAATGTGTTGAGCCAC 58.368 45.455 0.00 0.00 37.68 5.01
99 100 2.290367 CGTCAAGAAATGTGTTGAGCCA 59.710 45.455 0.00 0.00 37.68 4.75
100 101 2.918131 GCGTCAAGAAATGTGTTGAGCC 60.918 50.000 0.00 0.00 37.68 4.70
101 102 2.310577 GCGTCAAGAAATGTGTTGAGC 58.689 47.619 0.00 0.00 37.68 4.26
102 103 2.032894 ACGCGTCAAGAAATGTGTTGAG 60.033 45.455 5.58 0.00 37.68 3.02
103 104 1.937223 ACGCGTCAAGAAATGTGTTGA 59.063 42.857 5.58 0.00 34.81 3.18
104 105 2.383298 ACGCGTCAAGAAATGTGTTG 57.617 45.000 5.58 0.00 0.00 3.33
105 106 3.414549 AAACGCGTCAAGAAATGTGTT 57.585 38.095 14.44 0.00 39.82 3.32
106 107 3.414549 AAAACGCGTCAAGAAATGTGT 57.585 38.095 14.44 0.00 0.00 3.72
107 108 3.061271 CCAAAAACGCGTCAAGAAATGTG 60.061 43.478 14.44 0.77 0.00 3.21
108 109 3.112580 CCAAAAACGCGTCAAGAAATGT 58.887 40.909 14.44 0.00 0.00 2.71
109 110 2.097444 GCCAAAAACGCGTCAAGAAATG 60.097 45.455 14.44 5.21 0.00 2.32
110 111 2.124122 GCCAAAAACGCGTCAAGAAAT 58.876 42.857 14.44 0.00 0.00 2.17
111 112 1.551145 GCCAAAAACGCGTCAAGAAA 58.449 45.000 14.44 0.00 0.00 2.52
112 113 0.248702 GGCCAAAAACGCGTCAAGAA 60.249 50.000 14.44 0.00 0.00 2.52
113 114 1.357334 GGCCAAAAACGCGTCAAGA 59.643 52.632 14.44 0.00 0.00 3.02
114 115 1.660264 GGGCCAAAAACGCGTCAAG 60.660 57.895 14.44 2.76 0.00 3.02
115 116 2.413765 GGGCCAAAAACGCGTCAA 59.586 55.556 14.44 0.00 0.00 3.18
116 117 2.829003 TGGGCCAAAAACGCGTCA 60.829 55.556 14.44 0.00 0.00 4.35
117 118 2.354188 GTGGGCCAAAAACGCGTC 60.354 61.111 14.44 0.00 0.00 5.19
118 119 3.906879 GGTGGGCCAAAAACGCGT 61.907 61.111 8.40 5.58 34.09 6.01
119 120 3.905678 TGGTGGGCCAAAAACGCG 61.906 61.111 8.40 3.53 42.83 6.01
127 128 0.489567 AGGGTTATTTTGGTGGGCCA 59.510 50.000 0.00 0.00 44.38 5.36
128 129 1.277842 CAAGGGTTATTTTGGTGGGCC 59.722 52.381 0.00 0.00 0.00 5.80
129 130 1.338674 GCAAGGGTTATTTTGGTGGGC 60.339 52.381 0.00 0.00 0.00 5.36
130 131 1.067213 CGCAAGGGTTATTTTGGTGGG 60.067 52.381 0.00 0.00 0.00 4.61
131 132 2.362169 CGCAAGGGTTATTTTGGTGG 57.638 50.000 0.00 0.00 0.00 4.61
159 160 8.194408 ACTGGAGTAGTTAAGGGTTATCCTTGT 61.194 40.741 7.09 0.00 45.22 3.16
160 161 6.156429 ACTGGAGTAGTTAAGGGTTATCCTTG 59.844 42.308 7.09 0.00 45.22 3.61
161 162 6.269974 ACTGGAGTAGTTAAGGGTTATCCTT 58.730 40.000 1.15 1.15 43.41 3.36
162 163 5.851418 ACTGGAGTAGTTAAGGGTTATCCT 58.149 41.667 0.00 0.00 42.17 3.24
175 176 6.667558 AAGCAACTAGTTAACTGGAGTAGT 57.332 37.500 24.08 13.24 42.89 2.73
176 177 7.964604 AAAAGCAACTAGTTAACTGGAGTAG 57.035 36.000 24.08 12.61 0.00 2.57
177 178 9.485206 CTAAAAAGCAACTAGTTAACTGGAGTA 57.515 33.333 24.08 0.36 0.00 2.59
178 179 7.444487 CCTAAAAAGCAACTAGTTAACTGGAGT 59.556 37.037 24.08 14.63 0.00 3.85
179 180 7.094762 CCCTAAAAAGCAACTAGTTAACTGGAG 60.095 40.741 24.08 14.00 0.00 3.86
180 181 6.713450 CCCTAAAAAGCAACTAGTTAACTGGA 59.287 38.462 24.08 1.88 0.00 3.86
181 182 6.072119 CCCCTAAAAAGCAACTAGTTAACTGG 60.072 42.308 18.56 17.57 0.00 4.00
182 183 6.489022 ACCCCTAAAAAGCAACTAGTTAACTG 59.511 38.462 18.56 10.41 0.00 3.16
183 184 6.489022 CACCCCTAAAAAGCAACTAGTTAACT 59.511 38.462 13.68 13.68 0.00 2.24
184 185 6.487668 TCACCCCTAAAAAGCAACTAGTTAAC 59.512 38.462 8.04 3.72 0.00 2.01
185 186 6.603224 TCACCCCTAAAAAGCAACTAGTTAA 58.397 36.000 8.04 0.00 0.00 2.01
186 187 6.190346 TCACCCCTAAAAAGCAACTAGTTA 57.810 37.500 8.04 0.00 0.00 2.24
187 188 5.056553 TCACCCCTAAAAAGCAACTAGTT 57.943 39.130 1.12 1.12 0.00 2.24
188 189 4.717279 TCACCCCTAAAAAGCAACTAGT 57.283 40.909 0.00 0.00 0.00 2.57
189 190 6.095021 GGTTATCACCCCTAAAAAGCAACTAG 59.905 42.308 0.00 0.00 37.03 2.57
190 191 5.947566 GGTTATCACCCCTAAAAAGCAACTA 59.052 40.000 0.00 0.00 37.03 2.24
191 192 4.770531 GGTTATCACCCCTAAAAAGCAACT 59.229 41.667 0.00 0.00 37.03 3.16
192 193 4.525100 TGGTTATCACCCCTAAAAAGCAAC 59.475 41.667 0.00 0.00 43.49 4.17
193 194 4.742012 TGGTTATCACCCCTAAAAAGCAA 58.258 39.130 0.00 0.00 43.49 3.91
194 195 4.390129 TGGTTATCACCCCTAAAAAGCA 57.610 40.909 0.00 0.00 43.49 3.91
195 196 4.441495 GCATGGTTATCACCCCTAAAAAGC 60.441 45.833 0.00 0.00 43.49 3.51
196 197 4.956075 AGCATGGTTATCACCCCTAAAAAG 59.044 41.667 0.00 0.00 43.49 2.27
197 198 4.941713 AGCATGGTTATCACCCCTAAAAA 58.058 39.130 0.00 0.00 43.49 1.94
198 199 4.601406 AGCATGGTTATCACCCCTAAAA 57.399 40.909 0.00 0.00 43.49 1.52
199 200 4.601406 AAGCATGGTTATCACCCCTAAA 57.399 40.909 8.73 0.00 43.49 1.85
200 201 4.601406 AAAGCATGGTTATCACCCCTAA 57.399 40.909 11.15 0.00 43.49 2.69
201 202 5.922960 ATAAAGCATGGTTATCACCCCTA 57.077 39.130 11.15 0.00 43.49 3.53
202 203 4.814224 ATAAAGCATGGTTATCACCCCT 57.186 40.909 11.15 0.00 43.49 4.79
203 204 4.892934 TGAATAAAGCATGGTTATCACCCC 59.107 41.667 11.15 0.00 43.49 4.95
204 205 6.655078 ATGAATAAAGCATGGTTATCACCC 57.345 37.500 11.15 0.00 43.49 4.61
229 230 5.010617 GTGTATCCCATGACTTGTGGTTTTT 59.989 40.000 0.00 0.00 34.87 1.94
230 231 4.522789 GTGTATCCCATGACTTGTGGTTTT 59.477 41.667 0.00 0.00 34.87 2.43
231 232 4.079253 GTGTATCCCATGACTTGTGGTTT 58.921 43.478 0.00 0.00 34.87 3.27
232 233 3.073798 TGTGTATCCCATGACTTGTGGTT 59.926 43.478 0.00 0.00 34.87 3.67
233 234 2.642311 TGTGTATCCCATGACTTGTGGT 59.358 45.455 0.00 0.00 34.87 4.16
234 235 3.348647 TGTGTATCCCATGACTTGTGG 57.651 47.619 0.00 0.00 36.47 4.17
235 236 4.096833 CCAATGTGTATCCCATGACTTGTG 59.903 45.833 0.00 0.00 0.00 3.33
236 237 4.018506 TCCAATGTGTATCCCATGACTTGT 60.019 41.667 0.00 0.00 0.00 3.16
237 238 4.336433 GTCCAATGTGTATCCCATGACTTG 59.664 45.833 0.00 0.00 0.00 3.16
238 239 4.526970 GTCCAATGTGTATCCCATGACTT 58.473 43.478 0.00 0.00 0.00 3.01
239 240 3.117888 GGTCCAATGTGTATCCCATGACT 60.118 47.826 0.00 0.00 0.00 3.41
240 241 3.214328 GGTCCAATGTGTATCCCATGAC 58.786 50.000 0.00 0.00 0.00 3.06
241 242 2.849318 TGGTCCAATGTGTATCCCATGA 59.151 45.455 0.00 0.00 0.00 3.07
242 243 3.295585 TGGTCCAATGTGTATCCCATG 57.704 47.619 0.00 0.00 0.00 3.66
243 244 3.436906 CCATGGTCCAATGTGTATCCCAT 60.437 47.826 2.57 0.00 0.00 4.00
244 245 2.091939 CCATGGTCCAATGTGTATCCCA 60.092 50.000 2.57 0.00 0.00 4.37
245 246 2.586425 CCATGGTCCAATGTGTATCCC 58.414 52.381 2.57 0.00 0.00 3.85
246 247 2.174639 TCCCATGGTCCAATGTGTATCC 59.825 50.000 11.73 0.00 0.00 2.59
247 248 3.576078 TCCCATGGTCCAATGTGTATC 57.424 47.619 11.73 0.00 0.00 2.24
248 249 4.079269 TCAATCCCATGGTCCAATGTGTAT 60.079 41.667 11.73 0.00 0.00 2.29
249 250 3.268072 TCAATCCCATGGTCCAATGTGTA 59.732 43.478 11.73 0.00 0.00 2.90
250 251 2.042842 TCAATCCCATGGTCCAATGTGT 59.957 45.455 11.73 0.00 0.00 3.72
251 252 2.428171 GTCAATCCCATGGTCCAATGTG 59.572 50.000 11.73 0.00 0.00 3.21
252 253 2.624029 GGTCAATCCCATGGTCCAATGT 60.624 50.000 11.73 0.00 0.00 2.71
253 254 2.034124 GGTCAATCCCATGGTCCAATG 58.966 52.381 11.73 2.60 0.00 2.82
254 255 1.645391 TGGTCAATCCCATGGTCCAAT 59.355 47.619 11.73 0.00 34.77 3.16
255 256 1.079796 TGGTCAATCCCATGGTCCAA 58.920 50.000 11.73 0.00 34.77 3.53
256 257 1.079796 TTGGTCAATCCCATGGTCCA 58.920 50.000 11.73 6.47 33.60 4.02
257 258 1.824852 GTTTGGTCAATCCCATGGTCC 59.175 52.381 11.73 3.96 33.60 4.46
258 259 2.231235 GTGTTTGGTCAATCCCATGGTC 59.769 50.000 11.73 0.00 33.60 4.02
259 260 2.247358 GTGTTTGGTCAATCCCATGGT 58.753 47.619 11.73 0.00 33.60 3.55
260 261 2.029110 GTGTGTTTGGTCAATCCCATGG 60.029 50.000 4.14 4.14 33.60 3.66
261 262 2.627221 TGTGTGTTTGGTCAATCCCATG 59.373 45.455 0.00 0.00 33.60 3.66
262 263 2.956132 TGTGTGTTTGGTCAATCCCAT 58.044 42.857 0.00 0.00 33.60 4.00
263 264 2.443958 TGTGTGTTTGGTCAATCCCA 57.556 45.000 0.00 0.00 34.77 4.37
264 265 2.029110 CCATGTGTGTTTGGTCAATCCC 60.029 50.000 0.00 0.00 34.77 3.85
265 266 2.610232 GCCATGTGTGTTTGGTCAATCC 60.610 50.000 0.00 0.00 35.34 3.01
266 267 2.676076 GCCATGTGTGTTTGGTCAATC 58.324 47.619 0.00 0.00 35.34 2.67
267 268 1.000385 CGCCATGTGTGTTTGGTCAAT 60.000 47.619 0.00 0.00 35.34 2.57
268 269 0.383590 CGCCATGTGTGTTTGGTCAA 59.616 50.000 0.00 0.00 35.34 3.18
269 270 0.749818 ACGCCATGTGTGTTTGGTCA 60.750 50.000 0.00 0.00 32.53 4.02
270 271 0.383949 AACGCCATGTGTGTTTGGTC 59.616 50.000 7.15 0.00 45.18 4.02
271 272 2.499214 AACGCCATGTGTGTTTGGT 58.501 47.368 7.15 0.00 45.18 3.67
276 277 0.884704 GACTGGAACGCCATGTGTGT 60.885 55.000 0.00 0.00 44.91 3.72
277 278 1.577328 GGACTGGAACGCCATGTGTG 61.577 60.000 0.00 0.00 44.91 3.82
278 279 1.302511 GGACTGGAACGCCATGTGT 60.303 57.895 0.00 0.00 44.91 3.72
279 280 0.249120 TAGGACTGGAACGCCATGTG 59.751 55.000 0.00 0.00 44.91 3.21
280 281 0.981183 TTAGGACTGGAACGCCATGT 59.019 50.000 0.00 0.00 44.91 3.21
281 282 1.369625 GTTAGGACTGGAACGCCATG 58.630 55.000 0.00 0.00 44.91 3.66
282 283 0.252197 GGTTAGGACTGGAACGCCAT 59.748 55.000 0.00 0.00 44.91 4.40
283 284 1.122632 TGGTTAGGACTGGAACGCCA 61.123 55.000 0.00 0.00 43.47 5.69
284 285 0.391263 CTGGTTAGGACTGGAACGCC 60.391 60.000 0.00 0.00 0.00 5.68
285 286 0.606604 TCTGGTTAGGACTGGAACGC 59.393 55.000 0.00 0.00 0.00 4.84
286 287 1.893801 ACTCTGGTTAGGACTGGAACG 59.106 52.381 0.00 0.00 0.00 3.95
287 288 2.028020 CCACTCTGGTTAGGACTGGAAC 60.028 54.545 0.00 0.00 31.35 3.62
288 289 2.158219 TCCACTCTGGTTAGGACTGGAA 60.158 50.000 0.00 0.00 39.03 3.53
289 290 1.431633 TCCACTCTGGTTAGGACTGGA 59.568 52.381 0.00 0.00 39.03 3.86
290 291 1.938585 TCCACTCTGGTTAGGACTGG 58.061 55.000 0.00 0.00 39.03 4.00
291 292 3.325135 AGTTTCCACTCTGGTTAGGACTG 59.675 47.826 0.00 0.00 39.03 3.51
292 293 3.588569 AGTTTCCACTCTGGTTAGGACT 58.411 45.455 0.00 0.00 39.03 3.85
293 294 4.065789 CAAGTTTCCACTCTGGTTAGGAC 58.934 47.826 0.00 0.00 39.03 3.85
294 295 3.072476 CCAAGTTTCCACTCTGGTTAGGA 59.928 47.826 0.00 0.00 39.03 2.94
295 296 3.412386 CCAAGTTTCCACTCTGGTTAGG 58.588 50.000 0.00 0.00 39.03 2.69
296 297 2.814336 GCCAAGTTTCCACTCTGGTTAG 59.186 50.000 0.00 0.00 39.03 2.34
297 298 2.441750 AGCCAAGTTTCCACTCTGGTTA 59.558 45.455 0.00 0.00 39.03 2.85
298 299 1.215423 AGCCAAGTTTCCACTCTGGTT 59.785 47.619 0.00 0.00 39.03 3.67
299 300 0.846693 AGCCAAGTTTCCACTCTGGT 59.153 50.000 0.00 0.00 39.03 4.00
300 301 2.814336 GTTAGCCAAGTTTCCACTCTGG 59.186 50.000 0.00 0.00 39.43 3.86
301 302 3.744660 AGTTAGCCAAGTTTCCACTCTG 58.255 45.455 0.00 0.00 30.45 3.35
302 303 4.439253 AAGTTAGCCAAGTTTCCACTCT 57.561 40.909 0.00 0.00 30.45 3.24
303 304 5.392057 GCATAAGTTAGCCAAGTTTCCACTC 60.392 44.000 0.00 0.00 30.45 3.51
304 305 4.459337 GCATAAGTTAGCCAAGTTTCCACT 59.541 41.667 0.00 0.00 33.11 4.00
305 306 4.671766 CGCATAAGTTAGCCAAGTTTCCAC 60.672 45.833 0.00 0.00 0.00 4.02
306 307 3.438781 CGCATAAGTTAGCCAAGTTTCCA 59.561 43.478 0.00 0.00 0.00 3.53
307 308 3.730963 GCGCATAAGTTAGCCAAGTTTCC 60.731 47.826 0.30 0.00 0.00 3.13
308 309 3.127030 AGCGCATAAGTTAGCCAAGTTTC 59.873 43.478 11.47 0.00 0.00 2.78
309 310 3.081804 AGCGCATAAGTTAGCCAAGTTT 58.918 40.909 11.47 0.00 0.00 2.66
310 311 2.711542 AGCGCATAAGTTAGCCAAGTT 58.288 42.857 11.47 0.00 0.00 2.66
311 312 2.403252 AGCGCATAAGTTAGCCAAGT 57.597 45.000 11.47 0.00 0.00 3.16
312 313 2.939103 AGAAGCGCATAAGTTAGCCAAG 59.061 45.455 11.47 0.00 0.00 3.61
313 314 2.985896 AGAAGCGCATAAGTTAGCCAA 58.014 42.857 11.47 0.00 0.00 4.52
314 315 2.691409 AGAAGCGCATAAGTTAGCCA 57.309 45.000 11.47 0.00 0.00 4.75
315 316 4.058817 ACATAGAAGCGCATAAGTTAGCC 58.941 43.478 11.47 0.00 0.00 3.93
316 317 5.234329 TGAACATAGAAGCGCATAAGTTAGC 59.766 40.000 11.47 0.00 0.00 3.09
317 318 6.292381 GGTGAACATAGAAGCGCATAAGTTAG 60.292 42.308 11.47 0.00 0.00 2.34
318 319 5.522460 GGTGAACATAGAAGCGCATAAGTTA 59.478 40.000 11.47 0.00 0.00 2.24
319 320 4.332819 GGTGAACATAGAAGCGCATAAGTT 59.667 41.667 11.47 8.83 0.00 2.66
320 321 3.871594 GGTGAACATAGAAGCGCATAAGT 59.128 43.478 11.47 0.00 0.00 2.24
321 322 4.122776 AGGTGAACATAGAAGCGCATAAG 58.877 43.478 11.47 0.00 0.00 1.73
322 323 4.137116 AGGTGAACATAGAAGCGCATAA 57.863 40.909 11.47 0.00 0.00 1.90
323 324 3.819564 AGGTGAACATAGAAGCGCATA 57.180 42.857 11.47 0.00 0.00 3.14
324 325 2.698855 AGGTGAACATAGAAGCGCAT 57.301 45.000 11.47 0.00 0.00 4.73
325 326 2.472695 AAGGTGAACATAGAAGCGCA 57.527 45.000 11.47 0.00 0.00 6.09
326 327 2.281762 CGTAAGGTGAACATAGAAGCGC 59.718 50.000 0.00 0.00 0.00 5.92
327 328 3.546670 GTCGTAAGGTGAACATAGAAGCG 59.453 47.826 0.00 0.00 38.47 4.68
328 329 4.745649 AGTCGTAAGGTGAACATAGAAGC 58.254 43.478 0.00 0.00 38.47 3.86
329 330 6.866770 TGAAAGTCGTAAGGTGAACATAGAAG 59.133 38.462 0.00 0.00 38.47 2.85
330 331 6.751157 TGAAAGTCGTAAGGTGAACATAGAA 58.249 36.000 0.00 0.00 38.47 2.10
331 332 6.335471 TGAAAGTCGTAAGGTGAACATAGA 57.665 37.500 0.00 0.00 38.47 1.98
332 333 7.416154 TTTGAAAGTCGTAAGGTGAACATAG 57.584 36.000 0.00 0.00 38.47 2.23
333 334 7.496591 ACTTTTGAAAGTCGTAAGGTGAACATA 59.503 33.333 3.37 0.00 45.65 2.29
334 335 6.317893 ACTTTTGAAAGTCGTAAGGTGAACAT 59.682 34.615 3.37 0.00 45.65 2.71
335 336 5.644636 ACTTTTGAAAGTCGTAAGGTGAACA 59.355 36.000 3.37 0.00 45.65 3.18
336 337 6.115450 ACTTTTGAAAGTCGTAAGGTGAAC 57.885 37.500 3.37 0.00 45.65 3.18
337 338 7.846644 TTACTTTTGAAAGTCGTAAGGTGAA 57.153 32.000 12.05 0.00 45.65 3.18
338 339 7.846644 TTTACTTTTGAAAGTCGTAAGGTGA 57.153 32.000 12.05 0.00 45.65 4.02
384 385 3.810310 AGTGTTGGCAAATCGGAAAAA 57.190 38.095 0.00 0.00 0.00 1.94
385 386 3.810310 AAGTGTTGGCAAATCGGAAAA 57.190 38.095 0.00 0.00 0.00 2.29
386 387 3.810310 AAAGTGTTGGCAAATCGGAAA 57.190 38.095 0.00 0.00 0.00 3.13
387 388 5.010112 TCAATAAAGTGTTGGCAAATCGGAA 59.990 36.000 0.00 0.00 0.00 4.30
388 389 4.520874 TCAATAAAGTGTTGGCAAATCGGA 59.479 37.500 0.00 0.00 0.00 4.55
389 390 4.621034 GTCAATAAAGTGTTGGCAAATCGG 59.379 41.667 0.00 0.00 31.71 4.18
390 391 4.621034 GGTCAATAAAGTGTTGGCAAATCG 59.379 41.667 0.00 0.00 32.98 3.34
391 392 5.537188 TGGTCAATAAAGTGTTGGCAAATC 58.463 37.500 0.00 0.00 32.98 2.17
392 393 5.543507 TGGTCAATAAAGTGTTGGCAAAT 57.456 34.783 0.00 0.00 32.98 2.32
393 394 5.543507 ATGGTCAATAAAGTGTTGGCAAA 57.456 34.783 0.00 0.00 32.98 3.68
394 395 6.656632 TTATGGTCAATAAAGTGTTGGCAA 57.343 33.333 0.00 0.00 32.98 4.52
395 396 6.656632 TTTATGGTCAATAAAGTGTTGGCA 57.343 33.333 0.00 0.00 36.10 4.92
396 397 7.954788 TTTTTATGGTCAATAAAGTGTTGGC 57.045 32.000 0.00 0.00 40.86 4.52
397 398 8.442384 GCATTTTTATGGTCAATAAAGTGTTGG 58.558 33.333 8.08 0.00 40.86 3.77
398 399 9.206870 AGCATTTTTATGGTCAATAAAGTGTTG 57.793 29.630 8.08 0.00 40.86 3.33
399 400 9.423061 GAGCATTTTTATGGTCAATAAAGTGTT 57.577 29.630 11.28 4.06 45.46 3.32
400 401 8.986477 GAGCATTTTTATGGTCAATAAAGTGT 57.014 30.769 11.28 0.00 45.46 3.55
410 411 8.250332 TGTATTCCTTTGAGCATTTTTATGGTC 58.750 33.333 9.68 9.68 46.11 4.02
411 412 8.133024 TGTATTCCTTTGAGCATTTTTATGGT 57.867 30.769 0.00 0.00 34.63 3.55
412 413 7.707893 CCTGTATTCCTTTGAGCATTTTTATGG 59.292 37.037 0.00 0.00 0.00 2.74
413 414 8.253113 ACCTGTATTCCTTTGAGCATTTTTATG 58.747 33.333 0.00 0.00 0.00 1.90
414 415 8.366359 ACCTGTATTCCTTTGAGCATTTTTAT 57.634 30.769 0.00 0.00 0.00 1.40
415 416 7.093945 GGACCTGTATTCCTTTGAGCATTTTTA 60.094 37.037 0.00 0.00 0.00 1.52
416 417 6.295292 GGACCTGTATTCCTTTGAGCATTTTT 60.295 38.462 0.00 0.00 0.00 1.94
417 418 5.185828 GGACCTGTATTCCTTTGAGCATTTT 59.814 40.000 0.00 0.00 0.00 1.82
418 419 4.706962 GGACCTGTATTCCTTTGAGCATTT 59.293 41.667 0.00 0.00 0.00 2.32
419 420 4.273318 GGACCTGTATTCCTTTGAGCATT 58.727 43.478 0.00 0.00 0.00 3.56
420 421 3.372025 GGGACCTGTATTCCTTTGAGCAT 60.372 47.826 0.00 0.00 33.17 3.79
421 422 2.026262 GGGACCTGTATTCCTTTGAGCA 60.026 50.000 0.00 0.00 33.17 4.26
422 423 2.239907 AGGGACCTGTATTCCTTTGAGC 59.760 50.000 0.00 0.00 33.17 4.26
423 424 4.576330 AAGGGACCTGTATTCCTTTGAG 57.424 45.455 0.00 0.00 36.30 3.02
424 425 5.333566 AAAAGGGACCTGTATTCCTTTGA 57.666 39.130 6.92 0.00 45.59 2.69
446 447 6.659242 GGACCTGTATTCCTGATTCTCAAAAA 59.341 38.462 0.00 0.00 0.00 1.94
447 448 6.012508 AGGACCTGTATTCCTGATTCTCAAAA 60.013 38.462 0.00 0.00 42.28 2.44
448 449 5.488919 AGGACCTGTATTCCTGATTCTCAAA 59.511 40.000 0.00 0.00 42.28 2.69
449 450 5.032846 AGGACCTGTATTCCTGATTCTCAA 58.967 41.667 0.00 0.00 42.28 3.02
450 451 4.624913 AGGACCTGTATTCCTGATTCTCA 58.375 43.478 0.00 0.00 42.28 3.27
451 452 6.071051 GGATAGGACCTGTATTCCTGATTCTC 60.071 46.154 3.53 0.00 43.75 2.87
452 453 5.782845 GGATAGGACCTGTATTCCTGATTCT 59.217 44.000 3.53 0.00 43.75 2.40
453 454 5.544176 TGGATAGGACCTGTATTCCTGATTC 59.456 44.000 3.53 0.00 43.75 2.52
454 455 5.476983 TGGATAGGACCTGTATTCCTGATT 58.523 41.667 3.53 0.00 43.75 2.57
455 456 5.090139 CTGGATAGGACCTGTATTCCTGAT 58.910 45.833 3.53 0.00 43.75 2.90
456 457 4.483950 CTGGATAGGACCTGTATTCCTGA 58.516 47.826 3.53 0.00 43.75 3.86
457 458 3.007398 GCTGGATAGGACCTGTATTCCTG 59.993 52.174 3.53 9.98 43.75 3.86
458 459 3.243724 GCTGGATAGGACCTGTATTCCT 58.756 50.000 3.53 0.00 45.91 3.36
459 460 2.303311 GGCTGGATAGGACCTGTATTCC 59.697 54.545 3.53 6.01 0.00 3.01
460 461 2.303311 GGGCTGGATAGGACCTGTATTC 59.697 54.545 3.53 0.00 0.00 1.75
461 462 2.089925 AGGGCTGGATAGGACCTGTATT 60.090 50.000 3.53 0.00 41.34 1.89
462 463 1.509961 AGGGCTGGATAGGACCTGTAT 59.490 52.381 3.53 0.00 41.34 2.29
463 464 0.941963 AGGGCTGGATAGGACCTGTA 59.058 55.000 3.53 0.00 41.34 2.74
464 465 0.399233 GAGGGCTGGATAGGACCTGT 60.399 60.000 3.53 0.00 43.24 4.00
465 466 1.124477 GGAGGGCTGGATAGGACCTG 61.124 65.000 3.53 0.00 43.24 4.00
466 467 1.237458 GGAGGGCTGGATAGGACCT 59.763 63.158 0.00 0.00 46.39 3.85
467 468 2.210711 CGGAGGGCTGGATAGGACC 61.211 68.421 0.00 0.00 0.00 4.46
468 469 1.457831 ACGGAGGGCTGGATAGGAC 60.458 63.158 0.00 0.00 0.00 3.85
469 470 1.457643 CACGGAGGGCTGGATAGGA 60.458 63.158 0.00 0.00 0.00 2.94
470 471 1.749334 GACACGGAGGGCTGGATAGG 61.749 65.000 0.00 0.00 0.00 2.57
471 472 1.742768 GACACGGAGGGCTGGATAG 59.257 63.158 0.00 0.00 0.00 2.08
472 473 2.125326 CGACACGGAGGGCTGGATA 61.125 63.158 0.00 0.00 0.00 2.59
473 474 3.461773 CGACACGGAGGGCTGGAT 61.462 66.667 0.00 0.00 0.00 3.41
478 479 4.148825 ATCTGCGACACGGAGGGC 62.149 66.667 12.03 0.00 45.01 5.19
479 480 2.105128 GATCTGCGACACGGAGGG 59.895 66.667 12.03 0.00 45.01 4.30
480 481 2.105128 GGATCTGCGACACGGAGG 59.895 66.667 12.03 0.00 45.01 4.30
481 482 1.517257 GTGGATCTGCGACACGGAG 60.517 63.158 6.35 6.35 46.23 4.63
482 483 1.811645 TTGTGGATCTGCGACACGGA 61.812 55.000 0.00 0.00 34.80 4.69
483 484 0.948623 TTTGTGGATCTGCGACACGG 60.949 55.000 0.00 0.00 34.80 4.94
484 485 0.865111 TTTTGTGGATCTGCGACACG 59.135 50.000 0.00 0.00 34.80 4.49
485 486 2.483877 TCATTTTGTGGATCTGCGACAC 59.516 45.455 0.00 0.00 34.80 3.67
486 487 2.777094 TCATTTTGTGGATCTGCGACA 58.223 42.857 0.00 0.00 33.09 4.35
487 488 3.058293 TGTTCATTTTGTGGATCTGCGAC 60.058 43.478 0.00 0.00 0.00 5.19
488 489 3.145286 TGTTCATTTTGTGGATCTGCGA 58.855 40.909 0.00 0.00 0.00 5.10
489 490 3.189080 TCTGTTCATTTTGTGGATCTGCG 59.811 43.478 0.00 0.00 0.00 5.18
490 491 4.479619 GTCTGTTCATTTTGTGGATCTGC 58.520 43.478 0.00 0.00 0.00 4.26
491 492 4.378770 CCGTCTGTTCATTTTGTGGATCTG 60.379 45.833 0.00 0.00 0.00 2.90
492 493 3.753272 CCGTCTGTTCATTTTGTGGATCT 59.247 43.478 0.00 0.00 0.00 2.75
515 516 2.184579 GTGCTGACCCTCTACGGC 59.815 66.667 0.00 0.00 38.67 5.68
517 518 0.109086 CTGTGTGCTGACCCTCTACG 60.109 60.000 0.00 0.00 0.00 3.51
520 521 0.470833 AGTCTGTGTGCTGACCCTCT 60.471 55.000 0.00 0.00 42.33 3.69
522 523 1.750930 CAGTCTGTGTGCTGACCCT 59.249 57.895 0.00 0.00 42.33 4.34
606 608 4.838486 GAGAGAGACGGCGGCGTG 62.838 72.222 42.25 12.69 0.00 5.34
1060 1081 4.494199 CGATGAAAGTATCCAAGAAACGGC 60.494 45.833 0.00 0.00 0.00 5.68
1127 1148 1.446966 GACAGCCGGCAGAGAGAAC 60.447 63.158 31.54 6.90 0.00 3.01
1206 1227 0.594602 CTGACTCCGAACACGTACCA 59.405 55.000 0.00 0.00 0.00 3.25
1224 1245 2.449312 AGCCTCTCCAGCTCCACT 59.551 61.111 0.00 0.00 34.91 4.00
1299 1320 2.933878 AAAACCGCACCGCTGTCTCA 62.934 55.000 0.00 0.00 0.00 3.27
1395 1416 4.886579 ACAACAGAGCAAAATTTCCATCC 58.113 39.130 0.00 0.00 0.00 3.51
1530 1551 4.334759 CCAGACATGACCATCTCATCAAAC 59.665 45.833 0.00 0.00 37.53 2.93
1551 1572 0.180642 TACCAAACTCACGGCAACCA 59.819 50.000 0.00 0.00 0.00 3.67
1745 1766 6.947733 AGAACAACCAAATCTATCCATGTCAA 59.052 34.615 0.00 0.00 0.00 3.18
1764 1785 3.269381 AGGCCCAAATATCTGGAGAACAA 59.731 43.478 0.00 0.00 38.96 2.83
1840 1861 2.029470 CCCGCATCTTCTCTACCATCTC 60.029 54.545 0.00 0.00 0.00 2.75
2090 2111 4.689612 AGGGCGTTGTATATTGAGACAT 57.310 40.909 0.00 0.00 0.00 3.06
2223 2244 9.190317 TCTATCATACCTATAGTGCAGTAATGG 57.810 37.037 16.87 16.87 0.00 3.16
2475 2496 6.502138 TCCCTTGTAATCCATTTCCTTGAAT 58.498 36.000 0.00 0.00 0.00 2.57
2493 2514 1.470979 GCATCAGCTTGCATTCCCTTG 60.471 52.381 5.50 0.00 42.31 3.61
2871 2892 8.673711 CATACCTCATAAGCTAGTGTAGATCTC 58.326 40.741 0.00 0.00 0.00 2.75
2928 2949 5.359194 ACCTTTCAGAAACTTCTCTGTCA 57.641 39.130 0.00 0.00 42.93 3.58
3018 3039 2.359230 GTGGCAGAGGCAGGACAC 60.359 66.667 0.00 0.00 43.71 3.67
3323 3398 3.170717 TCACAATTACTCCCTCCGTTCT 58.829 45.455 0.00 0.00 0.00 3.01
3346 3421 2.364970 TGTTCAACAGGATTGCCTTTGG 59.635 45.455 0.00 0.00 43.90 3.28
3476 3552 5.381757 TCACTACCTTACATTGCTTTTGGT 58.618 37.500 0.00 0.00 0.00 3.67
3512 3588 9.480053 CATGAACCAACTTAAATCAAACAAGAT 57.520 29.630 0.00 0.00 0.00 2.40
3581 3657 9.974750 GATTTTTAGAGAAGTGTTATACAGTGC 57.025 33.333 0.00 0.00 30.99 4.40
3621 3697 9.013229 ACATTAAACTTGTTCTAGATGCATTGA 57.987 29.630 0.00 0.00 0.00 2.57
3633 3709 6.385649 TCAGGACCAACATTAAACTTGTTC 57.614 37.500 0.00 0.00 35.18 3.18
3688 3764 1.833630 TGTATACTGAAGGCAGCAGCT 59.166 47.619 4.17 0.00 46.26 4.24
3871 3947 3.843999 TGCAACTTCCACAACAGAAAAC 58.156 40.909 0.00 0.00 0.00 2.43
3945 4021 7.559590 CCTGATCTATGTTTAAACCTTCAGG 57.440 40.000 23.15 23.15 41.07 3.86
3952 4028 7.148255 TGTGATGCACCTGATCTATGTTTAAAC 60.148 37.037 11.54 11.54 32.73 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.