Multiple sequence alignment - TraesCS2B01G112200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G112200 chr2B 100.000 3764 0 0 1 3764 75615897 75612134 0.000000e+00 6951.0
1 TraesCS2B01G112200 chr2B 100.000 1827 0 0 5479 7305 75610419 75608593 0.000000e+00 3374.0
2 TraesCS2B01G112200 chr2B 100.000 1063 0 0 4034 5096 75611864 75610802 0.000000e+00 1964.0
3 TraesCS2B01G112200 chr2B 89.848 197 17 3 6695 6890 75681232 75681038 4.380000e-62 250.0
4 TraesCS2B01G112200 chr2B 88.780 205 14 3 7100 7296 77772564 77772361 7.320000e-60 243.0
5 TraesCS2B01G112200 chr2B 91.525 118 9 1 6901 7018 77772678 77772562 2.110000e-35 161.0
6 TraesCS2B01G112200 chr2B 90.083 121 9 3 6898 7018 76903681 76903798 3.530000e-33 154.0
7 TraesCS2B01G112200 chr2B 93.684 95 6 0 7008 7102 79359480 79359574 7.640000e-30 143.0
8 TraesCS2B01G112200 chr2B 89.565 115 8 4 7010 7124 525145618 525145508 7.640000e-30 143.0
9 TraesCS2B01G112200 chr2B 92.784 97 7 0 7010 7106 763444053 763444149 2.750000e-29 141.0
10 TraesCS2B01G112200 chr2B 97.222 36 1 0 7100 7135 76903796 76903831 2.200000e-05 62.1
11 TraesCS2B01G112200 chr2D 91.947 3837 169 47 1 3764 47421979 47418210 0.000000e+00 5245.0
12 TraesCS2B01G112200 chr2D 95.059 1012 47 3 5540 6551 47416353 47415345 0.000000e+00 1589.0
13 TraesCS2B01G112200 chr2D 90.973 997 59 14 4036 5028 47418154 47417185 0.000000e+00 1314.0
14 TraesCS2B01G112200 chr2D 94.962 397 16 1 5879 6271 47249442 47249046 2.900000e-173 619.0
15 TraesCS2B01G112200 chr2D 85.987 471 32 6 6536 7005 47415330 47414893 2.390000e-129 473.0
16 TraesCS2B01G112200 chr2D 96.135 207 7 1 7100 7305 47412464 47412258 3.270000e-88 337.0
17 TraesCS2B01G112200 chr2D 89.952 209 10 4 7100 7297 49254168 49254376 7.270000e-65 259.0
18 TraesCS2B01G112200 chr2D 93.162 117 7 1 6902 7018 49254055 49254170 3.500000e-38 171.0
19 TraesCS2B01G112200 chr2A 94.694 1225 55 5 5797 7018 50957595 50956378 0.000000e+00 1893.0
20 TraesCS2B01G112200 chr2A 85.422 1269 115 39 475 1694 50958882 50957635 0.000000e+00 1254.0
21 TraesCS2B01G112200 chr2A 88.562 306 21 7 1 305 50959171 50958879 6.970000e-95 359.0
22 TraesCS2B01G112200 chr2A 97.253 182 4 1 7100 7280 50956380 50956199 2.560000e-79 307.0
23 TraesCS2B01G112200 chr2A 88.889 207 15 5 7107 7305 50918383 50918177 1.570000e-61 248.0
24 TraesCS2B01G112200 chr2A 86.473 207 20 2 7107 7305 51539052 51539258 3.430000e-53 220.0
25 TraesCS2B01G112200 chr2A 95.041 121 5 1 6898 7018 50918509 50918390 9.670000e-44 189.0
26 TraesCS2B01G112200 chr2A 93.684 95 5 1 7016 7110 69326627 69326720 2.750000e-29 141.0
27 TraesCS2B01G112200 chr2A 91.304 69 4 2 6950 7018 51538949 51539015 7.800000e-15 93.5
28 TraesCS2B01G112200 chr3D 80.202 495 84 10 2313 2795 443420452 443419960 6.970000e-95 359.0
29 TraesCS2B01G112200 chr3D 79.346 489 93 8 2313 2795 443318706 443318220 3.270000e-88 337.0
30 TraesCS2B01G112200 chr3D 79.042 501 80 16 2313 2795 443429976 443429483 3.290000e-83 320.0
31 TraesCS2B01G112200 chr3D 77.749 391 65 16 1583 1969 443319241 443318869 3.430000e-53 220.0
32 TraesCS2B01G112200 chr3D 76.961 408 76 14 1583 1989 443438123 443437733 4.440000e-52 217.0
33 TraesCS2B01G112200 chr3D 81.579 266 41 5 1737 2001 443430356 443430098 5.740000e-51 213.0
34 TraesCS2B01G112200 chr3D 79.470 302 60 2 2496 2796 443437337 443437037 5.740000e-51 213.0
35 TraesCS2B01G112200 chr3D 77.891 294 46 15 1001 1276 443431238 443430946 1.630000e-36 165.0
36 TraesCS2B01G112200 chr3D 75.748 301 58 12 5662 5957 443440492 443440202 3.550000e-28 137.0
37 TraesCS2B01G112200 chr3D 80.226 177 33 2 6063 6238 551080152 551080327 1.650000e-26 132.0
38 TraesCS2B01G112200 chr3D 88.679 106 12 0 1176 1281 443421392 443421287 5.950000e-26 130.0
39 TraesCS2B01G112200 chr3D 87.255 102 13 0 1174 1275 443438534 443438433 4.630000e-22 117.0
40 TraesCS2B01G112200 chr3D 77.540 187 38 3 6063 6247 550684637 550684821 7.750000e-20 110.0
41 TraesCS2B01G112200 chr3D 82.031 128 21 2 5657 5783 443426898 443426772 2.790000e-19 108.0
42 TraesCS2B01G112200 chr3B 79.200 500 81 14 2313 2795 581133696 581133203 7.070000e-85 326.0
43 TraesCS2B01G112200 chr3B 78.702 493 95 7 2313 2795 581091020 581090528 3.290000e-83 320.0
44 TraesCS2B01G112200 chr3B 76.852 432 75 19 1582 2001 581091571 581091153 3.430000e-53 220.0
45 TraesCS2B01G112200 chr3B 76.850 419 77 17 1582 1989 581127457 581127048 1.230000e-52 219.0
46 TraesCS2B01G112200 chr3B 76.995 426 71 20 1583 1996 581267362 581266952 1.230000e-52 219.0
47 TraesCS2B01G112200 chr3B 76.978 417 60 24 1582 1984 710388836 710389230 9.610000e-49 206.0
48 TraesCS2B01G112200 chr3B 78.395 324 49 15 1001 1307 581267864 581267545 2.690000e-44 191.0
49 TraesCS2B01G112200 chr3B 82.353 187 31 2 2611 2796 581118539 581118354 2.110000e-35 161.0
50 TraesCS2B01G112200 chr3B 83.594 128 19 2 5657 5783 581129979 581129853 1.290000e-22 119.0
51 TraesCS2B01G112200 chr3B 89.655 87 9 0 1189 1275 581127957 581127871 2.150000e-20 111.0
52 TraesCS2B01G112200 chr3B 77.473 182 39 2 6067 6247 730345250 730345430 2.790000e-19 108.0
53 TraesCS2B01G112200 chr5B 78.024 496 93 14 2313 2795 577365069 577364577 1.540000e-76 298.0
54 TraesCS2B01G112200 chr5B 85.124 121 16 2 1198 1317 577366261 577366142 9.950000e-24 122.0
55 TraesCS2B01G112200 chr5A 76.613 496 89 20 2313 2795 590678187 590677706 1.570000e-61 248.0
56 TraesCS2B01G112200 chr5A 95.556 90 4 0 7016 7105 502684048 502684137 2.120000e-30 145.0
57 TraesCS2B01G112200 chr3A 77.129 411 71 16 1587 1989 584377584 584377189 4.440000e-52 217.0
58 TraesCS2B01G112200 chr3A 79.866 298 58 2 2500 2796 584446416 584446120 4.440000e-52 217.0
59 TraesCS2B01G112200 chr3A 79.193 322 42 15 996 1293 584378166 584377846 4.470000e-47 200.0
60 TraesCS2B01G112200 chr3A 94.286 105 6 0 2320 2424 584355229 584355125 2.110000e-35 161.0
61 TraesCS2B01G112200 chr3A 94.845 97 5 0 7006 7102 72473518 72473614 1.270000e-32 152.0
62 TraesCS2B01G112200 chr3A 80.874 183 35 0 6063 6245 688351569 688351751 2.120000e-30 145.0
63 TraesCS2B01G112200 chr3A 77.654 179 34 4 6063 6238 688275850 688276025 3.600000e-18 104.0
64 TraesCS2B01G112200 chr6D 96.591 88 3 0 7015 7102 26359303 26359216 5.910000e-31 147.0
65 TraesCS2B01G112200 chr6D 91.089 101 9 0 7012 7112 401201718 401201618 3.550000e-28 137.0
66 TraesCS2B01G112200 chr6B 96.591 88 3 0 7017 7104 672159169 672159256 5.910000e-31 147.0
67 TraesCS2B01G112200 chr6B 100.000 28 0 0 537 564 143458294 143458321 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G112200 chr2B 75608593 75615897 7304 True 4096.333333 6951 100.00000 1 7305 3 chr2B.!!$R3 7304
1 TraesCS2B01G112200 chr2D 47412258 47421979 9721 True 1791.600000 5245 92.02020 1 7305 5 chr2D.!!$R2 7304
2 TraesCS2B01G112200 chr2A 50956199 50959171 2972 True 953.250000 1893 91.48275 1 7280 4 chr2A.!!$R2 7279
3 TraesCS2B01G112200 chr3D 443318220 443319241 1021 True 278.500000 337 78.54750 1583 2795 2 chr3D.!!$R1 1212
4 TraesCS2B01G112200 chr3D 443419960 443421392 1432 True 244.500000 359 84.44050 1176 2795 2 chr3D.!!$R2 1619
5 TraesCS2B01G112200 chr3D 443426772 443431238 4466 True 201.500000 320 80.13575 1001 5783 4 chr3D.!!$R3 4782
6 TraesCS2B01G112200 chr3B 581090528 581091571 1043 True 270.000000 320 77.77700 1582 2795 2 chr3B.!!$R2 1213
7 TraesCS2B01G112200 chr3B 581266952 581267864 912 True 205.000000 219 77.69500 1001 1996 2 chr3B.!!$R4 995
8 TraesCS2B01G112200 chr5B 577364577 577366261 1684 True 210.000000 298 81.57400 1198 2795 2 chr5B.!!$R1 1597
9 TraesCS2B01G112200 chr3A 584377189 584378166 977 True 208.500000 217 78.16100 996 1989 2 chr3A.!!$R3 993

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 207 0.104855 TGTTCTTCTGCAGCGACTGT 59.895 50.0 9.47 0.0 33.43 3.55 F
407 409 0.185416 CTCCCGTAGCTCTCCCCTAA 59.815 60.0 0.00 0.0 0.00 2.69 F
410 412 0.185416 CCGTAGCTCTCCCCTAAGGA 59.815 60.0 0.00 0.0 44.91 3.36 F
1352 1606 0.249953 TTCGGCAGCAGGTTTCGTAA 60.250 50.0 0.00 0.0 0.00 3.18 F
2034 2682 0.906756 CTTGGCCTCAGGAGTCTCCA 60.907 60.0 21.26 0.0 39.61 3.86 F
3262 4306 0.173481 TTGGCTCTCGTCTTCCATCG 59.827 55.0 0.00 0.0 0.00 3.84 F
3607 4668 0.035820 TCATCCCTTAACCGCACACC 60.036 55.0 0.00 0.0 0.00 4.16 F
4716 6694 0.461961 AGCAGATGGGTTAGCGACTC 59.538 55.0 0.00 0.0 0.00 3.36 F
5725 8390 0.534203 GGGTTGCAACTTGTCCTCGA 60.534 55.0 27.64 0.0 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1915 2563 0.955428 TTGGATTGACAGCTCCACGC 60.955 55.000 8.03 0.00 41.20 5.34 R
2229 2877 0.741326 TCCACTCGCTCTGCTATGTC 59.259 55.000 0.00 0.00 0.00 3.06 R
2312 3046 9.693739 ATGTGTATTTGAATACCTGGACAAATA 57.306 29.630 18.40 18.40 41.23 1.40 R
3003 4022 1.035139 AGTCCTTTTTGCACAGCCTG 58.965 50.000 0.00 0.00 0.00 4.85 R
3334 4378 1.067142 GTCTGGCGGTCACTCACATAA 60.067 52.381 0.00 0.00 0.00 1.90 R
4695 6673 1.683917 AGTCGCTAACCCATCTGCTAG 59.316 52.381 0.00 0.00 0.00 3.42 R
5534 8170 1.001378 ACTGAATGGTGCGCAGAAAAC 60.001 47.619 12.22 3.34 33.94 2.43 R
6118 8786 0.033228 CTGCCAGGAGCTCGAATAGG 59.967 60.000 7.83 5.94 44.23 2.57 R
6878 9600 1.774856 ACTAGAGCCTTTGTTGTGGGT 59.225 47.619 0.00 0.00 36.70 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 0.249489 ATCTACGGCGGCTTCATGTC 60.249 55.000 13.24 0.00 0.00 3.06
198 199 5.356751 ACATGTTAGTGTTTGTTCTTCTGCA 59.643 36.000 0.00 0.00 0.00 4.41
199 200 5.484173 TGTTAGTGTTTGTTCTTCTGCAG 57.516 39.130 7.63 7.63 0.00 4.41
203 204 1.330521 TGTTTGTTCTTCTGCAGCGAC 59.669 47.619 9.47 5.31 0.00 5.19
206 207 0.104855 TGTTCTTCTGCAGCGACTGT 59.895 50.000 9.47 0.00 33.43 3.55
208 209 1.599542 GTTCTTCTGCAGCGACTGTTT 59.400 47.619 9.47 0.00 33.43 2.83
209 210 1.220529 TCTTCTGCAGCGACTGTTTG 58.779 50.000 9.47 0.00 33.43 2.93
212 213 0.937304 TCTGCAGCGACTGTTTGTTC 59.063 50.000 9.47 0.00 33.43 3.18
213 214 0.940126 CTGCAGCGACTGTTTGTTCT 59.060 50.000 0.00 0.00 33.43 3.01
214 215 1.331756 CTGCAGCGACTGTTTGTTCTT 59.668 47.619 0.00 0.00 33.43 2.52
215 216 1.330521 TGCAGCGACTGTTTGTTCTTC 59.669 47.619 8.32 0.00 33.43 2.87
216 217 1.599542 GCAGCGACTGTTTGTTCTTCT 59.400 47.619 8.32 0.00 33.43 2.85
286 288 0.980423 AACCTGAAGGAGAGGACAGC 59.020 55.000 2.62 0.00 38.94 4.40
329 331 1.364269 TCCACCCCGGTCATAGTTTT 58.636 50.000 0.00 0.00 35.57 2.43
332 334 1.816224 CACCCCGGTCATAGTTTTTGG 59.184 52.381 0.00 0.00 0.00 3.28
333 335 0.815095 CCCCGGTCATAGTTTTTGGC 59.185 55.000 0.00 0.00 0.00 4.52
334 336 1.540267 CCCGGTCATAGTTTTTGGCA 58.460 50.000 0.00 0.00 0.00 4.92
335 337 1.201414 CCCGGTCATAGTTTTTGGCAC 59.799 52.381 0.00 0.00 0.00 5.01
336 338 1.883275 CCGGTCATAGTTTTTGGCACA 59.117 47.619 0.00 0.00 0.00 4.57
361 363 8.957466 CAATATCCACTTATGCATTCTCATGAT 58.043 33.333 3.54 3.70 31.07 2.45
362 364 8.734218 ATATCCACTTATGCATTCTCATGATC 57.266 34.615 3.54 0.00 31.07 2.92
363 365 5.311265 TCCACTTATGCATTCTCATGATCC 58.689 41.667 3.54 0.00 31.07 3.36
364 366 5.072736 TCCACTTATGCATTCTCATGATCCT 59.927 40.000 3.54 0.00 31.07 3.24
365 367 5.768662 CCACTTATGCATTCTCATGATCCTT 59.231 40.000 3.54 0.00 31.07 3.36
366 368 6.938596 CCACTTATGCATTCTCATGATCCTTA 59.061 38.462 3.54 0.00 31.07 2.69
367 369 7.094890 CCACTTATGCATTCTCATGATCCTTAC 60.095 40.741 3.54 0.00 31.07 2.34
368 370 7.660617 CACTTATGCATTCTCATGATCCTTACT 59.339 37.037 3.54 0.00 31.07 2.24
386 388 1.059913 CTCCTTTCTCCTGTGGGTGT 58.940 55.000 0.00 0.00 0.00 4.16
407 409 0.185416 CTCCCGTAGCTCTCCCCTAA 59.815 60.000 0.00 0.00 0.00 2.69
409 411 0.828343 CCCGTAGCTCTCCCCTAAGG 60.828 65.000 0.00 0.00 35.17 2.69
410 412 0.185416 CCGTAGCTCTCCCCTAAGGA 59.815 60.000 0.00 0.00 44.91 3.36
412 414 1.682323 CGTAGCTCTCCCCTAAGGAAC 59.318 57.143 0.00 0.00 46.94 3.62
413 415 2.687314 CGTAGCTCTCCCCTAAGGAACT 60.687 54.545 0.00 0.00 46.94 3.01
414 416 3.434739 CGTAGCTCTCCCCTAAGGAACTA 60.435 52.174 0.00 0.00 46.94 2.24
416 418 2.090999 AGCTCTCCCCTAAGGAACTAGG 60.091 54.545 0.00 0.00 46.94 3.02
417 419 2.091222 GCTCTCCCCTAAGGAACTAGGA 60.091 54.545 0.00 0.00 46.94 2.94
418 420 3.438816 GCTCTCCCCTAAGGAACTAGGAT 60.439 52.174 0.00 0.00 46.94 3.24
419 421 4.202695 GCTCTCCCCTAAGGAACTAGGATA 60.203 50.000 0.00 0.00 46.94 2.59
420 422 5.576128 CTCTCCCCTAAGGAACTAGGATAG 58.424 50.000 0.00 0.00 46.94 2.08
421 423 4.090819 CTCCCCTAAGGAACTAGGATAGC 58.909 52.174 0.00 0.00 46.94 2.97
422 424 3.733281 TCCCCTAAGGAACTAGGATAGCT 59.267 47.826 0.00 0.00 43.78 3.32
423 425 3.835395 CCCCTAAGGAACTAGGATAGCTG 59.165 52.174 0.00 0.00 39.60 4.24
424 426 4.449376 CCCCTAAGGAACTAGGATAGCTGA 60.449 50.000 0.00 0.00 39.60 4.26
620 628 1.211212 CTCCTGCCATCCTTGTGATCA 59.789 52.381 0.00 0.00 0.00 2.92
642 651 4.612264 GCATGGGGCTTCATTATTGAAT 57.388 40.909 0.00 0.00 40.95 2.57
668 677 3.064134 GCCTTTTCTTAATCCGCTGAGTC 59.936 47.826 0.00 0.00 0.00 3.36
673 701 2.690497 TCTTAATCCGCTGAGTCTCCAG 59.310 50.000 0.00 0.00 37.23 3.86
689 717 1.135139 TCCAGCTAATCTCTGACGCAC 59.865 52.381 0.00 0.00 33.54 5.34
718 747 2.548057 ACTTATTTATGGGCATCGTGCG 59.452 45.455 4.33 0.00 46.21 5.34
746 775 2.607892 GGCCAGTTGACGCACAGAC 61.608 63.158 0.00 0.00 0.00 3.51
747 776 1.887242 GCCAGTTGACGCACAGACA 60.887 57.895 0.00 0.00 0.00 3.41
763 800 2.493278 CAGACAATGAGCGGGGAAAAAT 59.507 45.455 0.00 0.00 0.00 1.82
772 809 4.825085 TGAGCGGGGAAAAATTATGTATCC 59.175 41.667 0.00 0.00 0.00 2.59
780 817 7.229506 GGGGAAAAATTATGTATCCTGACTCAG 59.770 40.741 0.00 0.00 0.00 3.35
823 861 1.068472 AGAGTTAAGTGCGTGACTCCG 60.068 52.381 6.47 0.00 39.39 4.63
826 864 0.956633 TTAAGTGCGTGACTCCGTCT 59.043 50.000 0.00 0.00 31.73 4.18
845 883 3.321111 GTCTCTTTGTACAGGGTCTGACA 59.679 47.826 10.38 0.08 35.18 3.58
846 884 3.574396 TCTCTTTGTACAGGGTCTGACAG 59.426 47.826 10.38 0.00 35.18 3.51
847 885 2.632996 TCTTTGTACAGGGTCTGACAGG 59.367 50.000 10.38 0.79 35.18 4.00
869 907 1.372128 GAAGGCAAAGCAAGCACGG 60.372 57.895 0.00 0.00 0.00 4.94
904 942 2.289631 TGGACATGCCTACACTTGTGAG 60.290 50.000 7.83 1.30 37.63 3.51
908 946 2.743636 TGCCTACACTTGTGAGCTAC 57.256 50.000 7.83 0.00 0.00 3.58
909 947 1.275291 TGCCTACACTTGTGAGCTACC 59.725 52.381 7.83 0.00 0.00 3.18
910 948 1.736032 GCCTACACTTGTGAGCTACCG 60.736 57.143 7.83 0.00 0.00 4.02
911 949 1.544691 CCTACACTTGTGAGCTACCGT 59.455 52.381 7.83 0.00 0.00 4.83
912 950 2.751259 CCTACACTTGTGAGCTACCGTA 59.249 50.000 7.83 0.00 0.00 4.02
915 953 4.267349 ACACTTGTGAGCTACCGTATTT 57.733 40.909 7.83 0.00 0.00 1.40
916 954 5.395682 ACACTTGTGAGCTACCGTATTTA 57.604 39.130 7.83 0.00 0.00 1.40
917 955 5.974108 ACACTTGTGAGCTACCGTATTTAT 58.026 37.500 7.83 0.00 0.00 1.40
925 1010 4.777463 AGCTACCGTATTTATTTGGCTGT 58.223 39.130 0.00 0.00 0.00 4.40
935 1020 8.773645 CGTATTTATTTGGCTGTATGAAGATGA 58.226 33.333 0.00 0.00 0.00 2.92
990 1075 1.808945 GGGCACAGATCAACACAAGAG 59.191 52.381 0.00 0.00 0.00 2.85
1147 1238 6.939132 ATCAAGTAAGCTGATGGAATCTTG 57.061 37.500 0.00 0.00 45.81 3.02
1150 1241 6.372659 TCAAGTAAGCTGATGGAATCTTGTTC 59.627 38.462 0.00 0.00 45.81 3.18
1152 1243 3.010200 AGCTGATGGAATCTTGTTCCC 57.990 47.619 4.50 0.00 45.81 3.97
1153 1244 2.027385 GCTGATGGAATCTTGTTCCCC 58.973 52.381 4.50 0.00 45.81 4.81
1164 1255 6.406288 GGAATCTTGTTCCCCTGAAAATCATC 60.406 42.308 0.00 0.00 32.48 2.92
1167 1258 3.343617 TGTTCCCCTGAAAATCATCGTC 58.656 45.455 0.00 0.00 30.79 4.20
1278 1391 5.601662 TCATGCAGGTAAGTTGCTACTATC 58.398 41.667 0.00 0.00 42.02 2.08
1280 1393 6.549736 TCATGCAGGTAAGTTGCTACTATCTA 59.450 38.462 0.00 0.00 42.02 1.98
1281 1394 6.978674 TGCAGGTAAGTTGCTACTATCTAT 57.021 37.500 0.00 0.00 42.02 1.98
1282 1395 7.361457 TGCAGGTAAGTTGCTACTATCTATT 57.639 36.000 0.00 0.00 42.02 1.73
1284 1397 8.577296 TGCAGGTAAGTTGCTACTATCTATTAG 58.423 37.037 0.00 0.00 42.02 1.73
1317 1571 0.961019 TCTGGTTTTGATGTGCTGCC 59.039 50.000 0.00 0.00 0.00 4.85
1343 1597 4.107622 CCTCATTAAATTTTCGGCAGCAG 58.892 43.478 0.00 0.00 0.00 4.24
1352 1606 0.249953 TTCGGCAGCAGGTTTCGTAA 60.250 50.000 0.00 0.00 0.00 3.18
1365 1619 7.175990 AGCAGGTTTCGTAAAAGGAATTGATAA 59.824 33.333 0.00 0.00 0.00 1.75
1368 1622 9.292195 AGGTTTCGTAAAAGGAATTGATAAAGA 57.708 29.630 0.00 0.00 0.00 2.52
1374 1628 9.840427 CGTAAAAGGAATTGATAAAGAATGTGT 57.160 29.630 0.00 0.00 0.00 3.72
1425 1684 6.744112 CCTAACAAATAGAGTTTGGCACAAA 58.256 36.000 5.62 0.00 37.37 2.83
1428 1687 9.260002 CTAACAAATAGAGTTTGGCACAAATTT 57.740 29.630 5.62 0.00 37.37 1.82
1451 2001 3.448301 TGGTCCATTTTCCTGATGAATGC 59.552 43.478 0.00 0.00 31.67 3.56
1489 2041 1.978580 AGTTCCCTCTCGGACAAACAT 59.021 47.619 0.00 0.00 41.83 2.71
1579 2167 4.043200 GTTGACCAAGCTGGCCGC 62.043 66.667 11.02 11.02 42.67 6.53
1915 2563 3.967332 AATTTCTGGTTTGCAGATGGG 57.033 42.857 0.00 0.00 0.00 4.00
2034 2682 0.906756 CTTGGCCTCAGGAGTCTCCA 60.907 60.000 21.26 0.00 39.61 3.86
2104 2752 8.774183 TGCTTCTACCCCTACTTTAATGATTTA 58.226 33.333 0.00 0.00 0.00 1.40
2125 2773 4.974645 AGAAGAGGTCATGTGGTTGTAA 57.025 40.909 0.00 0.00 0.00 2.41
2229 2877 1.604378 CCTGGTGGGCTTAGGACAG 59.396 63.158 0.00 0.00 33.33 3.51
2260 2908 6.309251 GCAGAGCGAGTGGAGTATATATTTTC 59.691 42.308 0.00 0.00 0.00 2.29
2810 3555 3.794028 GTGAGTGACTTAGCATCTTAGCG 59.206 47.826 0.00 0.00 40.15 4.26
2829 3591 1.464997 CGGCTAGCTTCTTCACAAACC 59.535 52.381 15.72 0.00 0.00 3.27
2885 3649 5.062528 TGGTGAAGCCAAAATTTTCATTCC 58.937 37.500 0.00 0.00 45.94 3.01
2886 3650 5.062528 GGTGAAGCCAAAATTTTCATTCCA 58.937 37.500 0.00 0.00 37.17 3.53
2894 3658 6.533185 CCAAAATTTTCATTCCATTACACGC 58.467 36.000 0.00 0.00 0.00 5.34
2898 3662 8.687824 AAATTTTCATTCCATTACACGCTAAG 57.312 30.769 0.00 0.00 0.00 2.18
2942 3715 2.602878 CATGCTTGATGTTTCAGCACC 58.397 47.619 0.00 0.00 38.18 5.01
3021 4040 3.575399 CAGGCTGTGCAAAAAGGAC 57.425 52.632 6.28 0.00 39.32 3.85
3107 4126 2.555757 AGCAACTCAAAGATGCAAGGAC 59.444 45.455 11.11 0.00 45.13 3.85
3143 4162 7.930865 GGCTGGTATGATATTTATCTCCATCTC 59.069 40.741 0.00 0.00 32.83 2.75
3262 4306 0.173481 TTGGCTCTCGTCTTCCATCG 59.827 55.000 0.00 0.00 0.00 3.84
3277 4321 3.546724 TCCATCGTTCACAAAAGTCCAA 58.453 40.909 0.00 0.00 0.00 3.53
3461 4522 3.070018 CTGGAAGCGAGTCAATTTCACT 58.930 45.455 0.00 0.00 0.00 3.41
3464 4525 4.690748 TGGAAGCGAGTCAATTTCACTAAG 59.309 41.667 0.00 0.00 0.00 2.18
3481 4542 8.547967 TTCACTAAGATAGCCTGTGTAAAAAG 57.452 34.615 0.00 0.00 0.00 2.27
3482 4543 7.903145 TCACTAAGATAGCCTGTGTAAAAAGA 58.097 34.615 0.00 0.00 0.00 2.52
3510 4571 1.722034 TCTTAGCCTATGCCTCAGGG 58.278 55.000 0.00 0.00 38.69 4.45
3520 4581 4.143740 CCTCAGGGCTCAGGTCTT 57.856 61.111 0.00 0.00 0.00 3.01
3521 4582 1.904032 CCTCAGGGCTCAGGTCTTC 59.096 63.158 0.00 0.00 0.00 2.87
3522 4583 1.515020 CTCAGGGCTCAGGTCTTCG 59.485 63.158 0.00 0.00 0.00 3.79
3528 4589 2.202676 CTCAGGTCTTCGCGCTCC 60.203 66.667 5.56 0.45 0.00 4.70
3550 4611 0.898320 ACTCTTGCGCTATGTCCAGT 59.102 50.000 9.73 0.00 0.00 4.00
3600 4661 4.503714 TCATGTCCTTCATCCCTTAACC 57.496 45.455 0.00 0.00 34.09 2.85
3604 4665 1.065709 TCCTTCATCCCTTAACCGCAC 60.066 52.381 0.00 0.00 0.00 5.34
3605 4666 1.339631 CCTTCATCCCTTAACCGCACA 60.340 52.381 0.00 0.00 0.00 4.57
3607 4668 0.035820 TCATCCCTTAACCGCACACC 60.036 55.000 0.00 0.00 0.00 4.16
4069 5135 0.810031 CGGCGCTACTTTGCTGGTAT 60.810 55.000 7.64 0.00 33.80 2.73
4074 5140 1.594862 GCTACTTTGCTGGTATCGCTG 59.405 52.381 0.00 0.00 0.00 5.18
4172 6146 1.754226 GATGGTGAGTGAGAGGGAGAC 59.246 57.143 0.00 0.00 0.00 3.36
4331 6305 1.067283 TGTGGTGCTTGGTGTTGTTTG 60.067 47.619 0.00 0.00 0.00 2.93
4353 6327 2.488204 TGTCGGGCAAAGATGAATCA 57.512 45.000 0.00 0.00 0.00 2.57
4354 6328 2.083774 TGTCGGGCAAAGATGAATCAC 58.916 47.619 0.00 0.00 0.00 3.06
4360 6334 4.336433 CGGGCAAAGATGAATCACTACATT 59.664 41.667 0.00 0.00 0.00 2.71
4363 6337 6.040166 GGGCAAAGATGAATCACTACATTGAT 59.960 38.462 0.00 0.00 37.87 2.57
4448 6422 9.061435 TGAATGTTATTGAAGTGTGTGATGTTA 57.939 29.630 0.00 0.00 0.00 2.41
4454 6428 7.642071 ATTGAAGTGTGTGATGTTAAAATGC 57.358 32.000 0.00 0.00 0.00 3.56
4457 6431 5.034554 AGTGTGTGATGTTAAAATGCGAG 57.965 39.130 0.00 0.00 0.00 5.03
4517 6495 4.058124 GTGTATATGCACACACATCGGAT 58.942 43.478 17.87 0.00 46.55 4.18
4528 6506 6.280643 CACACACATCGGATAAATAGGAGAA 58.719 40.000 0.00 0.00 0.00 2.87
4536 6514 9.944376 CATCGGATAAATAGGAGAAGGAAATTA 57.056 33.333 0.00 0.00 0.00 1.40
4578 6556 4.333926 GGGAATCTGAGTTTGCACACTATC 59.666 45.833 5.28 0.00 0.00 2.08
4583 6561 3.838120 TGAGTTTGCACACTATCTCTCG 58.162 45.455 5.28 0.00 0.00 4.04
4595 6573 5.171476 CACTATCTCTCGAGCCTTCAAAAA 58.829 41.667 7.81 0.00 0.00 1.94
4626 6604 7.511959 AAGGCTACCTTTTTCAGTTCTAAAG 57.488 36.000 0.00 0.00 41.69 1.85
4630 6608 7.176865 GGCTACCTTTTTCAGTTCTAAAGGATT 59.823 37.037 17.13 1.69 46.99 3.01
4633 6611 8.712228 ACCTTTTTCAGTTCTAAAGGATTCAT 57.288 30.769 17.13 0.00 46.99 2.57
4668 6646 4.005650 TCTGCTGGAGTTGCTCAAATTAG 58.994 43.478 0.00 0.00 31.08 1.73
4716 6694 0.461961 AGCAGATGGGTTAGCGACTC 59.538 55.000 0.00 0.00 0.00 3.36
4760 6738 9.677567 CAAAAATATAGCTGTCTAGTCTCTCTC 57.322 37.037 0.00 0.00 0.00 3.20
4779 6757 9.411189 TCTCTCTCTAAAAGGTATAGTTTCTCC 57.589 37.037 0.00 0.00 0.00 3.71
4783 6761 8.630917 TCTCTAAAAGGTATAGTTTCTCCATCG 58.369 37.037 0.00 0.00 0.00 3.84
4816 6794 7.592938 TCGTTTTACCATAGTTTTCTAGACGA 58.407 34.615 0.00 0.00 35.72 4.20
4819 6797 8.981647 GTTTTACCATAGTTTTCTAGACGACAA 58.018 33.333 0.00 0.00 35.72 3.18
4820 6798 8.524870 TTTACCATAGTTTTCTAGACGACAAC 57.475 34.615 0.00 0.00 35.72 3.32
4839 6817 5.546526 ACAACACTGTTGTTTGACCATTTT 58.453 33.333 19.88 0.00 43.89 1.82
4840 6818 5.407995 ACAACACTGTTGTTTGACCATTTTG 59.592 36.000 19.88 0.00 43.89 2.44
4848 6826 6.482641 TGTTGTTTGACCATTTTGATCCAATG 59.517 34.615 7.47 7.47 0.00 2.82
4853 6831 8.404765 GTTTGACCATTTTGATCCAATGTTTTT 58.595 29.630 11.77 0.00 30.73 1.94
4855 6833 7.507829 TGACCATTTTGATCCAATGTTTTTCT 58.492 30.769 11.77 0.00 30.73 2.52
4856 6834 7.992033 TGACCATTTTGATCCAATGTTTTTCTT 59.008 29.630 11.77 0.00 30.73 2.52
4857 6835 8.382030 ACCATTTTGATCCAATGTTTTTCTTC 57.618 30.769 11.77 0.00 30.73 2.87
4859 6837 9.005777 CCATTTTGATCCAATGTTTTTCTTCAT 57.994 29.630 11.77 0.00 30.73 2.57
4863 6841 9.487790 TTTGATCCAATGTTTTTCTTCATAACC 57.512 29.630 0.00 0.00 0.00 2.85
4864 6842 8.421249 TGATCCAATGTTTTTCTTCATAACCT 57.579 30.769 0.00 0.00 0.00 3.50
4865 6843 8.869109 TGATCCAATGTTTTTCTTCATAACCTT 58.131 29.630 0.00 0.00 0.00 3.50
4868 6846 9.362151 TCCAATGTTTTTCTTCATAACCTTAGT 57.638 29.630 0.00 0.00 0.00 2.24
4913 6891 7.592938 TCCAACAATTCTACTTTGCAGTTATG 58.407 34.615 0.00 0.00 34.06 1.90
4972 6950 1.737363 GCAGCTTCTAGGACAGAACCG 60.737 57.143 0.00 0.00 38.39 4.44
4981 6959 4.335647 ACAGAACCGCCAGCTGGG 62.336 66.667 33.46 22.35 40.85 4.45
5021 7002 6.698329 TCATCAATGCTTTTTGTGAAGAGTTG 59.302 34.615 0.00 0.00 0.00 3.16
5039 7030 2.687935 GTTGCCAACTCCAGTTCTTTGA 59.312 45.455 0.00 0.00 35.83 2.69
5067 7058 4.439305 TTTGTTTGTGCATCTATGAGCC 57.561 40.909 0.00 0.00 0.00 4.70
5078 7714 2.763039 TCTATGAGCCACTTGGGATGA 58.237 47.619 0.00 0.00 40.01 2.92
5086 7722 2.356535 GCCACTTGGGATGATCTGAAGT 60.357 50.000 0.00 4.49 40.01 3.01
5088 7724 3.307975 CCACTTGGGATGATCTGAAGTGT 60.308 47.826 23.18 4.44 41.19 3.55
5092 7728 2.639347 TGGGATGATCTGAAGTGTGTGT 59.361 45.455 0.00 0.00 0.00 3.72
5094 7730 3.557898 GGGATGATCTGAAGTGTGTGTGT 60.558 47.826 0.00 0.00 0.00 3.72
5504 8140 4.018960 TCGGGGTTACAGTACTAGAGAGTT 60.019 45.833 0.00 0.00 37.10 3.01
5509 8145 6.658391 GGGTTACAGTACTAGAGAGTTGAAGA 59.342 42.308 0.00 0.00 37.10 2.87
5518 8154 4.348863 AGAGAGTTGAAGAGTGCAATGT 57.651 40.909 0.00 0.00 0.00 2.71
5522 8158 4.993584 AGAGTTGAAGAGTGCAATGTACAG 59.006 41.667 4.00 0.00 0.00 2.74
5526 8162 4.702831 TGAAGAGTGCAATGTACAGTGAA 58.297 39.130 26.35 14.23 0.00 3.18
5531 8167 3.951037 AGTGCAATGTACAGTGAACCAAA 59.049 39.130 26.76 3.54 35.64 3.28
5533 8169 5.068987 AGTGCAATGTACAGTGAACCAAAAT 59.931 36.000 26.76 8.80 35.64 1.82
5534 8170 5.175491 GTGCAATGTACAGTGAACCAAAATG 59.825 40.000 26.35 0.00 29.04 2.32
5536 8172 5.752955 GCAATGTACAGTGAACCAAAATGTT 59.247 36.000 26.35 0.00 0.00 2.71
5537 8173 6.257630 GCAATGTACAGTGAACCAAAATGTTT 59.742 34.615 26.35 0.00 0.00 2.83
5538 8174 7.201600 GCAATGTACAGTGAACCAAAATGTTTT 60.202 33.333 26.35 0.00 0.00 2.43
5574 8239 6.303839 TCAGTTAGAAATACCAAACTGGCTT 58.696 36.000 12.59 0.00 45.62 4.35
5641 8306 4.479619 GTTGACAAACTGATGCTGATTCC 58.520 43.478 0.00 0.00 33.22 3.01
5650 8315 4.008330 CTGATGCTGATTCCTGACAAAGT 58.992 43.478 0.00 0.00 0.00 2.66
5725 8390 0.534203 GGGTTGCAACTTGTCCTCGA 60.534 55.000 27.64 0.00 0.00 4.04
5739 8404 2.424246 GTCCTCGAGTACCTGAAGGAAG 59.576 54.545 12.31 0.00 38.94 3.46
5817 8482 4.851558 GCAAGAAGCAAACCTATGTTAACG 59.148 41.667 0.26 0.00 44.79 3.18
5837 8502 8.674607 GTTAACGAACCAAATATCTTCCTGAAT 58.325 33.333 0.00 0.00 0.00 2.57
5877 8542 2.447572 TCAGCAGGTGTGGGGTCA 60.448 61.111 0.00 0.00 0.00 4.02
5964 8629 7.227512 ACACTAGATGCAATAAGGTTAGCAATC 59.772 37.037 0.00 0.00 40.76 2.67
5976 8641 1.725641 TAGCAATCTTCAGCACACGG 58.274 50.000 0.00 0.00 0.00 4.94
5990 8655 1.683385 CACACGGCTCCATATCTCTCA 59.317 52.381 0.00 0.00 0.00 3.27
6014 8682 4.201763 GCGGATGCTTAAGACTCAGAAAAG 60.202 45.833 6.67 0.00 38.39 2.27
6057 8725 2.435938 CCACCACCCCGATTGACG 60.436 66.667 0.00 0.00 42.18 4.35
6118 8786 2.439156 GCCTGGGCACTCATGGAC 60.439 66.667 6.75 0.00 41.49 4.02
6228 8896 4.129737 TGCTCGCTGGTACTCCGC 62.130 66.667 0.00 0.00 36.30 5.54
6270 8938 3.827302 TCCTCTATTCGAGTATCAAGGGC 59.173 47.826 9.71 0.00 38.11 5.19
6283 8951 3.618855 AAGGGCGCAGGAGGACCTA 62.619 63.158 10.83 0.00 45.94 3.08
6305 8973 2.593257 GGTTGACGACCGTCTTCTAAG 58.407 52.381 21.01 0.00 44.80 2.18
6317 8985 3.391049 GTCTTCTAAGTTTGGTGCTCGT 58.609 45.455 0.00 0.00 0.00 4.18
6490 9158 2.894126 ACTTGTGGGTTGTTTTGTCACA 59.106 40.909 0.00 0.00 36.68 3.58
6545 9213 4.930963 TGCAAGTCAAACATTACAAGTGG 58.069 39.130 0.00 0.00 0.00 4.00
6570 9268 0.872388 GATGGCGACGAAAACAACCT 59.128 50.000 0.00 0.00 0.00 3.50
6595 9293 5.001874 AGGAACTAACCGAGGATGAAAAAC 58.998 41.667 0.00 0.00 36.02 2.43
6599 9297 5.127491 ACTAACCGAGGATGAAAAACACAA 58.873 37.500 0.00 0.00 0.00 3.33
6600 9298 4.568152 AACCGAGGATGAAAAACACAAG 57.432 40.909 0.00 0.00 0.00 3.16
6601 9299 3.551846 ACCGAGGATGAAAAACACAAGT 58.448 40.909 0.00 0.00 0.00 3.16
6602 9300 3.951680 ACCGAGGATGAAAAACACAAGTT 59.048 39.130 0.00 0.00 40.40 2.66
6646 9344 8.017418 TCATGAAAATTGGAAAGTTAGTTGGT 57.983 30.769 0.00 0.00 30.03 3.67
6662 9360 8.272173 AGTTAGTTGGTTATGGCTGTTATATGT 58.728 33.333 0.00 0.00 0.00 2.29
6720 9418 1.361668 CGATCCTTGAACTGGTGCCG 61.362 60.000 0.00 0.00 0.00 5.69
6754 9452 9.626045 CTTGGTCATATTAGTTTTGAAAGGAAC 57.374 33.333 0.00 0.00 0.00 3.62
6769 9467 7.826260 TGAAAGGAACATGTTTTCTTTTGAC 57.174 32.000 26.80 19.64 35.55 3.18
6810 9508 9.468532 CCTTTTTCTTTTCTTTAGAATGACCTG 57.531 33.333 0.00 0.00 33.54 4.00
6825 9523 7.899973 AGAATGACCTGTAAATTTGCTCAAAT 58.100 30.769 7.80 2.24 42.35 2.32
6857 9579 8.898761 AGACATTACAAGTACAATGAACAACAA 58.101 29.630 9.85 0.00 36.00 2.83
6858 9580 8.850454 ACATTACAAGTACAATGAACAACAAC 57.150 30.769 9.85 0.00 36.00 3.32
6859 9581 8.462811 ACATTACAAGTACAATGAACAACAACA 58.537 29.630 9.85 0.00 36.00 3.33
6860 9582 9.295214 CATTACAAGTACAATGAACAACAACAA 57.705 29.630 5.77 0.00 34.69 2.83
6861 9583 8.676454 TTACAAGTACAATGAACAACAACAAC 57.324 30.769 5.77 0.00 0.00 3.32
6862 9584 6.682746 ACAAGTACAATGAACAACAACAACA 58.317 32.000 5.77 0.00 0.00 3.33
6863 9585 7.148641 ACAAGTACAATGAACAACAACAACAA 58.851 30.769 5.77 0.00 0.00 2.83
6864 9586 7.653713 ACAAGTACAATGAACAACAACAACAAA 59.346 29.630 5.77 0.00 0.00 2.83
6865 9587 7.810766 AGTACAATGAACAACAACAACAAAG 57.189 32.000 0.00 0.00 0.00 2.77
6866 9588 5.529014 ACAATGAACAACAACAACAAAGC 57.471 34.783 0.00 0.00 0.00 3.51
6867 9589 4.993584 ACAATGAACAACAACAACAAAGCA 59.006 33.333 0.00 0.00 0.00 3.91
6868 9590 5.642919 ACAATGAACAACAACAACAAAGCAT 59.357 32.000 0.00 0.00 0.00 3.79
6869 9591 5.721876 ATGAACAACAACAACAAAGCATG 57.278 34.783 0.00 0.00 0.00 4.06
6870 9592 4.564041 TGAACAACAACAACAAAGCATGT 58.436 34.783 0.00 0.00 46.82 3.21
6871 9593 5.714047 TGAACAACAACAACAAAGCATGTA 58.286 33.333 0.00 0.00 42.99 2.29
6872 9594 6.159293 TGAACAACAACAACAAAGCATGTAA 58.841 32.000 0.00 0.00 42.99 2.41
6873 9595 6.646653 TGAACAACAACAACAAAGCATGTAAA 59.353 30.769 0.00 0.00 42.99 2.01
6874 9596 7.171508 TGAACAACAACAACAAAGCATGTAAAA 59.828 29.630 0.00 0.00 42.99 1.52
6875 9597 7.426929 ACAACAACAACAAAGCATGTAAAAA 57.573 28.000 0.00 0.00 42.99 1.94
6894 9616 2.979814 AAAACCCACAACAAAGGCTC 57.020 45.000 0.00 0.00 0.00 4.70
6908 9630 5.059833 ACAAAGGCTCTAGTTGAAAGACAG 58.940 41.667 3.78 0.00 0.00 3.51
6909 9631 5.163301 ACAAAGGCTCTAGTTGAAAGACAGA 60.163 40.000 3.78 0.00 0.00 3.41
6955 9677 1.394917 CTAACTGCAGCTAAGCCAACG 59.605 52.381 15.27 0.00 0.00 4.10
7015 12154 7.329962 TGAGCTATTTCAAATGATGCAAGTTTG 59.670 33.333 12.82 12.82 34.90 2.93
7016 12155 7.156673 AGCTATTTCAAATGATGCAAGTTTGT 58.843 30.769 16.42 5.66 35.09 2.83
7017 12156 8.306038 AGCTATTTCAAATGATGCAAGTTTGTA 58.694 29.630 16.42 8.51 35.09 2.41
7018 12157 8.375465 GCTATTTCAAATGATGCAAGTTTGTAC 58.625 33.333 16.42 0.00 35.09 2.90
7019 12158 9.630098 CTATTTCAAATGATGCAAGTTTGTACT 57.370 29.630 16.42 8.21 35.09 2.73
7020 12159 7.928908 TTTCAAATGATGCAAGTTTGTACTC 57.071 32.000 16.42 0.00 35.09 2.59
7021 12160 6.012658 TCAAATGATGCAAGTTTGTACTCC 57.987 37.500 16.42 0.00 35.09 3.85
7022 12161 5.048083 TCAAATGATGCAAGTTTGTACTCCC 60.048 40.000 16.42 0.00 35.09 4.30
7023 12162 3.788227 TGATGCAAGTTTGTACTCCCT 57.212 42.857 0.00 0.00 31.99 4.20
7024 12163 3.674997 TGATGCAAGTTTGTACTCCCTC 58.325 45.455 0.00 0.00 31.99 4.30
7025 12164 3.327757 TGATGCAAGTTTGTACTCCCTCT 59.672 43.478 0.00 0.00 31.99 3.69
7026 12165 3.126001 TGCAAGTTTGTACTCCCTCTG 57.874 47.619 0.00 0.00 31.99 3.35
7027 12166 2.438021 TGCAAGTTTGTACTCCCTCTGT 59.562 45.455 0.00 0.00 31.99 3.41
7028 12167 3.118038 TGCAAGTTTGTACTCCCTCTGTT 60.118 43.478 0.00 0.00 31.99 3.16
7029 12168 3.498777 GCAAGTTTGTACTCCCTCTGTTC 59.501 47.826 0.00 0.00 31.99 3.18
7030 12169 4.065789 CAAGTTTGTACTCCCTCTGTTCC 58.934 47.826 0.00 0.00 31.99 3.62
7031 12170 3.314693 AGTTTGTACTCCCTCTGTTCCA 58.685 45.455 0.00 0.00 0.00 3.53
7032 12171 3.714798 AGTTTGTACTCCCTCTGTTCCAA 59.285 43.478 0.00 0.00 0.00 3.53
7033 12172 4.165372 AGTTTGTACTCCCTCTGTTCCAAA 59.835 41.667 0.00 0.00 0.00 3.28
7034 12173 4.781775 TTGTACTCCCTCTGTTCCAAAA 57.218 40.909 0.00 0.00 0.00 2.44
7035 12174 4.993705 TGTACTCCCTCTGTTCCAAAAT 57.006 40.909 0.00 0.00 0.00 1.82
7036 12175 6.442541 TTGTACTCCCTCTGTTCCAAAATA 57.557 37.500 0.00 0.00 0.00 1.40
7037 12176 6.049955 TGTACTCCCTCTGTTCCAAAATAG 57.950 41.667 0.00 0.00 0.00 1.73
7038 12177 5.783360 TGTACTCCCTCTGTTCCAAAATAGA 59.217 40.000 0.00 0.00 32.42 1.98
7039 12178 6.443849 TGTACTCCCTCTGTTCCAAAATAGAT 59.556 38.462 0.00 0.00 32.88 1.98
7040 12179 5.749462 ACTCCCTCTGTTCCAAAATAGATG 58.251 41.667 0.00 0.00 32.88 2.90
7041 12180 5.488919 ACTCCCTCTGTTCCAAAATAGATGA 59.511 40.000 0.00 0.00 32.88 2.92
7042 12181 5.745227 TCCCTCTGTTCCAAAATAGATGAC 58.255 41.667 0.00 0.00 32.88 3.06
7043 12182 4.884164 CCCTCTGTTCCAAAATAGATGACC 59.116 45.833 0.00 0.00 32.88 4.02
7044 12183 4.884164 CCTCTGTTCCAAAATAGATGACCC 59.116 45.833 0.00 0.00 32.88 4.46
7045 12184 5.500234 CTCTGTTCCAAAATAGATGACCCA 58.500 41.667 0.00 0.00 32.88 4.51
7046 12185 5.886609 TCTGTTCCAAAATAGATGACCCAA 58.113 37.500 0.00 0.00 28.72 4.12
7047 12186 5.710099 TCTGTTCCAAAATAGATGACCCAAC 59.290 40.000 0.00 0.00 28.72 3.77
7048 12187 5.640147 TGTTCCAAAATAGATGACCCAACT 58.360 37.500 0.00 0.00 0.00 3.16
7049 12188 6.074648 TGTTCCAAAATAGATGACCCAACTT 58.925 36.000 0.00 0.00 0.00 2.66
7050 12189 6.208599 TGTTCCAAAATAGATGACCCAACTTC 59.791 38.462 0.00 0.00 0.00 3.01
7051 12190 4.941263 TCCAAAATAGATGACCCAACTTCG 59.059 41.667 0.00 0.00 0.00 3.79
7052 12191 4.700213 CCAAAATAGATGACCCAACTTCGT 59.300 41.667 0.00 0.00 0.00 3.85
7053 12192 5.878116 CCAAAATAGATGACCCAACTTCGTA 59.122 40.000 0.00 0.00 0.00 3.43
7054 12193 6.183360 CCAAAATAGATGACCCAACTTCGTAC 60.183 42.308 0.00 0.00 0.00 3.67
7055 12194 5.934402 AATAGATGACCCAACTTCGTACT 57.066 39.130 0.00 0.00 0.00 2.73
7056 12195 7.414222 AAATAGATGACCCAACTTCGTACTA 57.586 36.000 0.00 0.00 0.00 1.82
7057 12196 7.414222 AATAGATGACCCAACTTCGTACTAA 57.586 36.000 0.00 0.00 0.00 2.24
7058 12197 5.733620 AGATGACCCAACTTCGTACTAAA 57.266 39.130 0.00 0.00 0.00 1.85
7059 12198 5.721232 AGATGACCCAACTTCGTACTAAAG 58.279 41.667 3.96 3.96 0.00 1.85
7060 12199 4.942761 TGACCCAACTTCGTACTAAAGT 57.057 40.909 5.05 5.05 38.59 2.66
7061 12200 5.280654 TGACCCAACTTCGTACTAAAGTT 57.719 39.130 14.20 14.20 45.41 2.66
7062 12201 6.403866 TGACCCAACTTCGTACTAAAGTTA 57.596 37.500 17.68 5.14 43.31 2.24
7063 12202 6.449698 TGACCCAACTTCGTACTAAAGTTAG 58.550 40.000 17.68 15.12 43.31 2.34
7064 12203 6.040842 TGACCCAACTTCGTACTAAAGTTAGT 59.959 38.462 17.68 17.19 43.31 2.24
7065 12204 7.230510 TGACCCAACTTCGTACTAAAGTTAGTA 59.769 37.037 17.68 6.81 43.31 1.82
7092 12231 9.796062 CAAAATTGAGTCATTTATTTTGGAACG 57.204 29.630 22.69 7.18 41.13 3.95
7093 12232 8.532977 AAATTGAGTCATTTATTTTGGAACGG 57.467 30.769 0.00 0.00 0.00 4.44
7094 12233 6.885952 TTGAGTCATTTATTTTGGAACGGA 57.114 33.333 0.00 0.00 0.00 4.69
7095 12234 6.494893 TGAGTCATTTATTTTGGAACGGAG 57.505 37.500 0.00 0.00 0.00 4.63
7096 12235 5.414454 TGAGTCATTTATTTTGGAACGGAGG 59.586 40.000 0.00 0.00 0.00 4.30
7097 12236 4.705023 AGTCATTTATTTTGGAACGGAGGG 59.295 41.667 0.00 0.00 0.00 4.30
7098 12237 4.703093 GTCATTTATTTTGGAACGGAGGGA 59.297 41.667 0.00 0.00 0.00 4.20
7188 12328 5.886715 TTTTGAAAGAACAATCATGCACG 57.113 34.783 0.00 0.00 0.00 5.34
7208 12348 5.177511 GCACGCTTTCATGCTTATCTATGTA 59.822 40.000 0.00 0.00 38.84 2.29
7267 12407 8.961294 ACGATTCTTATATTTCTAACGCGTAT 57.039 30.769 14.46 4.04 0.00 3.06
7296 12436 5.732633 TGAAAATAACATGCCAAATCCCTG 58.267 37.500 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
198 199 1.599542 GCAGAAGAACAAACAGTCGCT 59.400 47.619 0.00 0.00 0.00 4.93
199 200 1.330521 TGCAGAAGAACAAACAGTCGC 59.669 47.619 0.00 0.00 0.00 5.19
203 204 1.599071 TCGCTGCAGAAGAACAAACAG 59.401 47.619 20.43 0.00 0.00 3.16
206 207 1.599071 CAGTCGCTGCAGAAGAACAAA 59.401 47.619 20.43 0.00 0.00 2.83
208 209 2.904664 CAGTCGCTGCAGAAGAACA 58.095 52.632 20.43 0.00 0.00 3.18
286 288 1.415289 TGAGCATCAGCATCTACCTGG 59.585 52.381 0.00 0.00 42.56 4.45
329 331 4.276642 TGCATAAGTGGATATTGTGCCAA 58.723 39.130 5.20 0.00 42.20 4.52
332 334 6.016860 TGAGAATGCATAAGTGGATATTGTGC 60.017 38.462 0.00 1.10 42.91 4.57
333 335 7.500720 TGAGAATGCATAAGTGGATATTGTG 57.499 36.000 0.00 0.00 35.09 3.33
334 336 7.940688 TCATGAGAATGCATAAGTGGATATTGT 59.059 33.333 0.00 0.00 35.09 2.71
335 337 8.331730 TCATGAGAATGCATAAGTGGATATTG 57.668 34.615 0.00 0.00 35.09 1.90
336 338 9.175312 GATCATGAGAATGCATAAGTGGATATT 57.825 33.333 0.00 0.00 35.09 1.28
344 346 7.333921 GGAGTAAGGATCATGAGAATGCATAAG 59.666 40.741 0.00 0.00 0.00 1.73
361 363 3.173965 CCACAGGAGAAAGGAGTAAGGA 58.826 50.000 0.00 0.00 0.00 3.36
362 364 2.237392 CCCACAGGAGAAAGGAGTAAGG 59.763 54.545 0.00 0.00 33.47 2.69
363 365 2.907042 ACCCACAGGAGAAAGGAGTAAG 59.093 50.000 0.00 0.00 36.73 2.34
364 366 2.637872 CACCCACAGGAGAAAGGAGTAA 59.362 50.000 0.00 0.00 36.73 2.24
365 367 2.257207 CACCCACAGGAGAAAGGAGTA 58.743 52.381 0.00 0.00 36.73 2.59
366 368 1.059913 CACCCACAGGAGAAAGGAGT 58.940 55.000 0.00 0.00 36.73 3.85
367 369 1.059913 ACACCCACAGGAGAAAGGAG 58.940 55.000 0.00 0.00 36.73 3.69
368 370 0.764890 CACACCCACAGGAGAAAGGA 59.235 55.000 0.00 0.00 36.73 3.36
397 399 3.975479 TCCTAGTTCCTTAGGGGAGAG 57.025 52.381 0.00 0.00 46.01 3.20
407 409 4.615513 ACTGTTCAGCTATCCTAGTTCCT 58.384 43.478 0.00 0.00 0.00 3.36
409 411 5.813157 GGAAACTGTTCAGCTATCCTAGTTC 59.187 44.000 0.00 0.00 35.25 3.01
410 412 5.338463 GGGAAACTGTTCAGCTATCCTAGTT 60.338 44.000 14.28 0.00 35.25 2.24
412 414 4.443598 GGGGAAACTGTTCAGCTATCCTAG 60.444 50.000 14.28 0.00 35.25 3.02
413 415 3.454812 GGGGAAACTGTTCAGCTATCCTA 59.545 47.826 14.28 0.00 35.25 2.94
414 416 2.239907 GGGGAAACTGTTCAGCTATCCT 59.760 50.000 14.28 0.00 35.25 3.24
416 418 2.644676 GGGGGAAACTGTTCAGCTATC 58.355 52.381 0.00 0.00 35.25 2.08
417 419 2.808906 GGGGGAAACTGTTCAGCTAT 57.191 50.000 0.00 0.00 35.25 2.97
468 470 4.025313 GGCAAAGCGAAATAAGCAACAAAA 60.025 37.500 0.00 0.00 37.01 2.44
518 520 3.544615 AAAAACCTCGAAGCAACGC 57.455 47.368 0.00 0.00 0.00 4.84
642 651 3.057596 CAGCGGATTAAGAAAAGGCACAA 60.058 43.478 0.00 0.00 0.00 3.33
668 677 1.406898 TGCGTCAGAGATTAGCTGGAG 59.593 52.381 0.00 0.00 34.20 3.86
673 701 2.860582 GCCTAGTGCGTCAGAGATTAGC 60.861 54.545 0.00 0.00 0.00 3.09
674 702 2.287909 GGCCTAGTGCGTCAGAGATTAG 60.288 54.545 0.00 0.00 42.61 1.73
689 717 4.469657 TGCCCATAAATAAGTTGGCCTAG 58.530 43.478 3.32 0.00 38.10 3.02
746 775 5.009854 ACATAATTTTTCCCCGCTCATTG 57.990 39.130 0.00 0.00 0.00 2.82
747 776 6.015434 GGATACATAATTTTTCCCCGCTCATT 60.015 38.462 0.00 0.00 0.00 2.57
806 844 3.190337 ACGGAGTCACGCACTTAAC 57.810 52.632 0.00 0.00 29.74 2.01
823 861 3.321111 TGTCAGACCCTGTACAAAGAGAC 59.679 47.826 0.00 1.87 32.61 3.36
826 864 2.632996 CCTGTCAGACCCTGTACAAAGA 59.367 50.000 0.00 0.00 32.61 2.52
845 883 0.606604 CTTGCTTTGCCTTCATGCCT 59.393 50.000 0.00 0.00 0.00 4.75
846 884 1.017701 GCTTGCTTTGCCTTCATGCC 61.018 55.000 0.00 0.00 0.00 4.40
847 885 0.320073 TGCTTGCTTTGCCTTCATGC 60.320 50.000 0.00 0.00 0.00 4.06
869 907 1.890876 TGTCCAACTGCCATGTACAC 58.109 50.000 0.00 0.00 0.00 2.90
895 933 6.903883 AATAAATACGGTAGCTCACAAGTG 57.096 37.500 0.00 0.00 0.00 3.16
904 942 6.425721 TCATACAGCCAAATAAATACGGTAGC 59.574 38.462 0.00 0.00 0.00 3.58
908 946 7.490962 TCTTCATACAGCCAAATAAATACGG 57.509 36.000 0.00 0.00 0.00 4.02
909 947 8.773645 TCATCTTCATACAGCCAAATAAATACG 58.226 33.333 0.00 0.00 0.00 3.06
911 949 9.288576 CCTCATCTTCATACAGCCAAATAAATA 57.711 33.333 0.00 0.00 0.00 1.40
912 950 7.781693 ACCTCATCTTCATACAGCCAAATAAAT 59.218 33.333 0.00 0.00 0.00 1.40
915 953 6.252599 ACCTCATCTTCATACAGCCAAATA 57.747 37.500 0.00 0.00 0.00 1.40
916 954 5.121380 ACCTCATCTTCATACAGCCAAAT 57.879 39.130 0.00 0.00 0.00 2.32
917 955 4.574674 ACCTCATCTTCATACAGCCAAA 57.425 40.909 0.00 0.00 0.00 3.28
925 1010 5.523588 ACTCTCCTCAACCTCATCTTCATA 58.476 41.667 0.00 0.00 0.00 2.15
935 1020 1.366319 ATGCCAACTCTCCTCAACCT 58.634 50.000 0.00 0.00 0.00 3.50
977 1062 7.601886 CCATGTATCTATCCTCTTGTGTTGATC 59.398 40.741 0.00 0.00 0.00 2.92
990 1075 4.621747 GCAGTAGCACCCATGTATCTATCC 60.622 50.000 0.00 0.00 41.58 2.59
1049 1137 2.202570 CAAGAATGGCAGCTGCGC 60.203 61.111 31.19 23.57 43.26 6.09
1050 1138 2.488355 CCAAGAATGGCAGCTGCG 59.512 61.111 31.19 15.88 40.58 5.18
1147 1238 3.375299 CAGACGATGATTTTCAGGGGAAC 59.625 47.826 0.00 0.00 31.35 3.62
1150 1241 1.672881 GCAGACGATGATTTTCAGGGG 59.327 52.381 0.00 0.00 0.00 4.79
1152 1243 5.801350 TTTAGCAGACGATGATTTTCAGG 57.199 39.130 0.00 0.00 0.00 3.86
1153 1244 9.430838 CTAAATTTAGCAGACGATGATTTTCAG 57.569 33.333 12.15 0.00 0.00 3.02
1281 1394 9.474920 CAAAACCAGAAAGATAAATTGCACTAA 57.525 29.630 0.00 0.00 0.00 2.24
1282 1395 8.855110 TCAAAACCAGAAAGATAAATTGCACTA 58.145 29.630 0.00 0.00 0.00 2.74
1284 1397 7.945033 TCAAAACCAGAAAGATAAATTGCAC 57.055 32.000 0.00 0.00 0.00 4.57
1317 1571 2.851824 GCCGAAAATTTAATGAGGCGTG 59.148 45.455 0.00 0.00 33.43 5.34
1343 1597 9.902196 TTCTTTATCAATTCCTTTTACGAAACC 57.098 29.630 0.00 0.00 0.00 3.27
1382 1636 9.606631 TTGTTAGGCATTTCAAATACAAAAACT 57.393 25.926 0.00 0.00 0.00 2.66
1395 1650 6.531594 GCCAAACTCTATTTGTTAGGCATTTC 59.468 38.462 0.00 0.00 0.00 2.17
1416 1675 3.853355 ATGGACCAAAATTTGTGCCAA 57.147 38.095 16.78 5.35 36.16 4.52
1425 1684 6.684897 TTCATCAGGAAAATGGACCAAAAT 57.315 33.333 0.00 0.00 30.98 1.82
1428 1687 4.081531 GCATTCATCAGGAAAATGGACCAA 60.082 41.667 0.00 0.00 39.39 3.67
1451 2001 4.459337 GGAACTGGTCCCAAATTTCTACTG 59.541 45.833 0.00 0.00 41.10 2.74
1575 2163 2.218530 GTCAAAACAAATCAACAGCGGC 59.781 45.455 0.00 0.00 0.00 6.53
1579 2167 8.472683 TTTTACCTGTCAAAACAAATCAACAG 57.527 30.769 0.00 0.00 34.24 3.16
1775 2418 3.988186 TGGAGAACCTATAGGCCTCTAGA 59.012 47.826 27.45 16.36 37.92 2.43
1915 2563 0.955428 TTGGATTGACAGCTCCACGC 60.955 55.000 8.03 0.00 41.20 5.34
2034 2682 5.588845 TCCCTGAATGGACAAATATTTGGT 58.411 37.500 27.43 15.53 42.34 3.67
2104 2752 4.102524 TGTTACAACCACATGACCTCTTCT 59.897 41.667 0.00 0.00 0.00 2.85
2125 2773 6.714278 TGCATAGCCTTATCATATGACATGT 58.286 36.000 7.78 0.00 0.00 3.21
2197 2845 2.124362 CAGGCCACCACACACACA 60.124 61.111 5.01 0.00 0.00 3.72
2198 2846 2.906897 CCAGGCCACCACACACAC 60.907 66.667 5.01 0.00 0.00 3.82
2229 2877 0.741326 TCCACTCGCTCTGCTATGTC 59.259 55.000 0.00 0.00 0.00 3.06
2312 3046 9.693739 ATGTGTATTTGAATACCTGGACAAATA 57.306 29.630 18.40 18.40 41.23 1.40
2485 3223 5.985911 AGTATTAATAGGACCACTGCGTTT 58.014 37.500 0.00 0.00 0.00 3.60
2810 3555 1.464997 CGGTTTGTGAAGAAGCTAGCC 59.535 52.381 12.13 0.00 0.00 3.93
2824 3586 6.842163 AGATGTTAATAAAGCTCACGGTTTG 58.158 36.000 0.00 0.00 40.71 2.93
2829 3591 7.470289 AGCTAAGATGTTAATAAAGCTCACG 57.530 36.000 0.00 0.00 33.78 4.35
2841 3603 5.186409 ACCAACGACCTAAGCTAAGATGTTA 59.814 40.000 0.00 0.00 0.00 2.41
2885 3649 5.678483 GTCATGAAATGCTTAGCGTGTAATG 59.322 40.000 7.49 7.49 46.21 1.90
2886 3650 5.586243 AGTCATGAAATGCTTAGCGTGTAAT 59.414 36.000 0.00 0.00 46.21 1.89
2926 3699 5.450965 GGGAATATGGTGCTGAAACATCAAG 60.451 44.000 0.00 0.00 33.56 3.02
2956 3729 4.777896 ACCACACTCTTTAGCTATGAAGGA 59.222 41.667 5.54 0.00 0.00 3.36
3003 4022 1.035139 AGTCCTTTTTGCACAGCCTG 58.965 50.000 0.00 0.00 0.00 4.85
3021 4040 6.773638 AGGAGTAGATATTTATGCCCACAAG 58.226 40.000 0.00 0.00 0.00 3.16
3107 4126 6.889301 ATATCATACCAGCCAAACATGAAG 57.111 37.500 0.00 0.00 0.00 3.02
3143 4162 4.276678 CCAACATGCATAGTTCCCATGTAG 59.723 45.833 0.00 0.00 46.25 2.74
3227 4271 6.600882 AGAGCCAACATTTTTCTTCATCAT 57.399 33.333 0.00 0.00 0.00 2.45
3262 4306 6.136541 AGTTCAGATTGGACTTTTGTGAAC 57.863 37.500 0.00 0.00 41.60 3.18
3277 4321 7.944554 TCAAAAGAACCCTTGATAAGTTCAGAT 59.055 33.333 5.07 0.00 41.86 2.90
3334 4378 1.067142 GTCTGGCGGTCACTCACATAA 60.067 52.381 0.00 0.00 0.00 1.90
3449 4510 6.820656 CACAGGCTATCTTAGTGAAATTGACT 59.179 38.462 0.00 0.00 32.14 3.41
3461 4522 7.119262 GTGCTTCTTTTTACACAGGCTATCTTA 59.881 37.037 0.00 0.00 33.23 2.10
3464 4525 5.392057 GGTGCTTCTTTTTACACAGGCTATC 60.392 44.000 0.00 0.00 34.69 2.08
3481 4542 3.313803 GCATAGGCTAAGAAAGGTGCTTC 59.686 47.826 0.00 0.00 36.96 3.86
3482 4543 3.282885 GCATAGGCTAAGAAAGGTGCTT 58.717 45.455 0.00 0.00 36.96 3.91
3510 4571 2.883253 GAGCGCGAAGACCTGAGC 60.883 66.667 12.10 0.00 0.00 4.26
3511 4572 2.202676 GGAGCGCGAAGACCTGAG 60.203 66.667 12.10 0.00 0.00 3.35
3512 4573 2.989253 TGGAGCGCGAAGACCTGA 60.989 61.111 12.10 0.00 0.00 3.86
3513 4574 2.507992 CTGGAGCGCGAAGACCTG 60.508 66.667 12.10 7.03 0.00 4.00
3514 4575 2.676822 TCTGGAGCGCGAAGACCT 60.677 61.111 12.10 0.00 0.00 3.85
3515 4576 2.507324 GTCTGGAGCGCGAAGACC 60.507 66.667 22.02 13.71 35.36 3.85
3516 4577 1.515304 GAGTCTGGAGCGCGAAGAC 60.515 63.158 23.94 23.94 40.53 3.01
3517 4578 1.244697 AAGAGTCTGGAGCGCGAAGA 61.245 55.000 12.10 3.38 0.00 2.87
3518 4579 1.075425 CAAGAGTCTGGAGCGCGAAG 61.075 60.000 12.10 0.48 0.00 3.79
3519 4580 1.080501 CAAGAGTCTGGAGCGCGAA 60.081 57.895 12.10 0.00 0.00 4.70
3520 4581 2.568612 CAAGAGTCTGGAGCGCGA 59.431 61.111 12.10 0.00 0.00 5.87
3521 4582 3.184683 GCAAGAGTCTGGAGCGCG 61.185 66.667 0.00 0.00 0.00 6.86
3522 4583 3.184683 CGCAAGAGTCTGGAGCGC 61.185 66.667 18.00 0.00 41.95 5.92
3528 4589 1.134995 TGGACATAGCGCAAGAGTCTG 60.135 52.381 11.47 0.00 43.02 3.51
3550 4611 3.755905 TGATAATGTCTTGCTTCGCCAAA 59.244 39.130 0.00 0.00 0.00 3.28
3561 4622 7.997223 AGGACATGAATGATGTGATAATGTCTT 59.003 33.333 0.00 2.97 45.90 3.01
3564 4625 7.776500 TGAAGGACATGAATGATGTGATAATGT 59.224 33.333 0.00 0.00 45.90 2.71
3600 4661 3.740044 ACGAAAATATGAAGGTGTGCG 57.260 42.857 0.00 0.00 0.00 5.34
3604 4665 4.621034 GCCAACAACGAAAATATGAAGGTG 59.379 41.667 0.00 0.00 0.00 4.00
3605 4666 4.279671 TGCCAACAACGAAAATATGAAGGT 59.720 37.500 0.00 0.00 0.00 3.50
3607 4668 6.585702 TGAATGCCAACAACGAAAATATGAAG 59.414 34.615 0.00 0.00 0.00 3.02
4033 5094 1.150567 CCGACAGCAGCATAGCAGAC 61.151 60.000 0.00 0.00 36.85 3.51
4034 5095 1.142531 CCGACAGCAGCATAGCAGA 59.857 57.895 0.00 0.00 36.85 4.26
4172 6146 5.895928 TCACTCTTCATCTCTGAAATACCG 58.104 41.667 0.00 0.00 40.78 4.02
4255 6229 8.645110 TCAACAATCTATCTCAAGCTATCATCA 58.355 33.333 0.00 0.00 0.00 3.07
4315 6289 3.063485 ACAAACAAACAACACCAAGCAC 58.937 40.909 0.00 0.00 0.00 4.40
4331 6305 3.057596 TGATTCATCTTTGCCCGACAAAC 60.058 43.478 0.13 0.00 43.35 2.93
4353 6327 5.238432 TGCTCGTTCAACAAATCAATGTAGT 59.762 36.000 0.00 0.00 32.02 2.73
4354 6328 5.688823 TGCTCGTTCAACAAATCAATGTAG 58.311 37.500 0.00 0.00 32.02 2.74
4360 6334 3.625313 TGTTCTGCTCGTTCAACAAATCA 59.375 39.130 0.00 0.00 0.00 2.57
4363 6337 2.096819 GGTGTTCTGCTCGTTCAACAAA 59.903 45.455 0.00 0.00 30.73 2.83
4537 6515 9.734984 CAGATTCCCTAAAAACTACTTCCTTTA 57.265 33.333 0.00 0.00 0.00 1.85
4549 6527 5.596361 TGTGCAAACTCAGATTCCCTAAAAA 59.404 36.000 0.00 0.00 0.00 1.94
4650 6628 3.441572 CCACCTAATTTGAGCAACTCCAG 59.558 47.826 0.00 0.00 0.00 3.86
4652 6630 3.686016 TCCACCTAATTTGAGCAACTCC 58.314 45.455 0.00 0.00 0.00 3.85
4668 6646 2.124529 GCCTTAGCCAGCTCCACC 60.125 66.667 0.00 0.00 0.00 4.61
4695 6673 1.683917 AGTCGCTAACCCATCTGCTAG 59.316 52.381 0.00 0.00 0.00 3.42
4742 6720 7.051623 CCTTTTAGAGAGAGACTAGACAGCTA 58.948 42.308 0.00 0.00 0.00 3.32
4744 6722 5.650703 ACCTTTTAGAGAGAGACTAGACAGC 59.349 44.000 0.00 0.00 0.00 4.40
4745 6723 8.974060 ATACCTTTTAGAGAGAGACTAGACAG 57.026 38.462 0.00 0.00 0.00 3.51
4753 6731 9.411189 GGAGAAACTATACCTTTTAGAGAGAGA 57.589 37.037 0.00 0.00 0.00 3.10
4756 6734 9.974980 GATGGAGAAACTATACCTTTTAGAGAG 57.025 37.037 0.00 0.00 0.00 3.20
4760 6738 8.414778 ACTCGATGGAGAAACTATACCTTTTAG 58.585 37.037 12.14 0.00 43.27 1.85
4763 6741 6.793505 ACTCGATGGAGAAACTATACCTTT 57.206 37.500 12.14 0.00 43.27 3.11
4774 6752 7.864379 GGTAAAACGATATAACTCGATGGAGAA 59.136 37.037 12.14 0.00 43.27 2.87
4779 6757 9.622004 ACTATGGTAAAACGATATAACTCGATG 57.378 33.333 2.85 0.00 41.12 3.84
4792 6770 7.326789 TGTCGTCTAGAAAACTATGGTAAAACG 59.673 37.037 0.00 0.00 0.00 3.60
4819 6797 5.398603 TCAAAATGGTCAAACAACAGTGT 57.601 34.783 0.00 0.00 40.75 3.55
4820 6798 5.463061 GGATCAAAATGGTCAAACAACAGTG 59.537 40.000 0.00 0.00 0.00 3.66
4839 6817 8.421249 AGGTTATGAAGAAAAACATTGGATCA 57.579 30.769 0.00 0.00 0.00 2.92
4882 6860 7.551585 TGCAAAGTAGAATTGTTGGAGAAAAA 58.448 30.769 0.00 0.00 0.00 1.94
4887 6865 5.695851 ACTGCAAAGTAGAATTGTTGGAG 57.304 39.130 2.71 2.71 42.93 3.86
4889 6867 7.326789 CACATAACTGCAAAGTAGAATTGTTGG 59.673 37.037 0.00 0.00 0.00 3.77
4895 6873 5.256474 AGGCACATAACTGCAAAGTAGAAT 58.744 37.500 0.00 0.00 39.08 2.40
4901 6879 2.297033 ACCAAGGCACATAACTGCAAAG 59.703 45.455 0.00 0.00 39.08 2.77
4949 6927 2.222227 TCTGTCCTAGAAGCTGCAGA 57.778 50.000 20.43 0.00 30.84 4.26
4981 6959 4.782019 TTGATGACATGGTTTTACCTGC 57.218 40.909 0.00 0.00 39.58 4.85
5021 7002 4.590850 AATTCAAAGAACTGGAGTTGGC 57.409 40.909 0.00 0.00 38.56 4.52
5047 7038 3.191162 GTGGCTCATAGATGCACAAACAA 59.809 43.478 0.00 0.00 0.00 2.83
5049 7040 3.012518 AGTGGCTCATAGATGCACAAAC 58.987 45.455 0.00 0.00 0.00 2.93
5051 7042 3.011818 CAAGTGGCTCATAGATGCACAA 58.988 45.455 0.00 0.00 0.00 3.33
5067 7058 3.688185 CACACTTCAGATCATCCCAAGTG 59.312 47.826 18.76 18.76 46.24 3.16
5478 8114 5.513233 TCTCTAGTACTGTAACCCCGAATT 58.487 41.667 5.39 0.00 0.00 2.17
5479 8115 5.121380 TCTCTAGTACTGTAACCCCGAAT 57.879 43.478 5.39 0.00 0.00 3.34
5504 8140 4.335400 TCACTGTACATTGCACTCTTCA 57.665 40.909 8.28 0.00 0.00 3.02
5509 8145 3.207265 TGGTTCACTGTACATTGCACT 57.793 42.857 13.87 0.00 0.00 4.40
5518 8154 6.039616 GCAGAAAACATTTTGGTTCACTGTA 58.960 36.000 11.28 0.00 36.80 2.74
5522 8158 3.302415 GCGCAGAAAACATTTTGGTTCAC 60.302 43.478 0.30 0.00 0.00 3.18
5526 8162 2.200899 GTGCGCAGAAAACATTTTGGT 58.799 42.857 12.22 0.00 0.00 3.67
5531 8167 2.035704 TGAATGGTGCGCAGAAAACATT 59.964 40.909 12.22 16.30 36.08 2.71
5533 8169 1.001487 CTGAATGGTGCGCAGAAAACA 60.001 47.619 12.22 8.37 0.00 2.83
5534 8170 1.001378 ACTGAATGGTGCGCAGAAAAC 60.001 47.619 12.22 3.34 33.94 2.43
5536 8172 1.317613 AACTGAATGGTGCGCAGAAA 58.682 45.000 12.22 0.00 33.94 2.52
5537 8173 2.076100 CTAACTGAATGGTGCGCAGAA 58.924 47.619 12.22 1.14 33.94 3.02
5538 8174 1.275010 TCTAACTGAATGGTGCGCAGA 59.725 47.619 12.22 0.00 33.94 4.26
5574 8239 7.877003 TGCGTGTTTTTCTTATTTAATCTCCA 58.123 30.769 0.00 0.00 0.00 3.86
5641 8306 5.577164 CCAATAGAGACCGTAACTTTGTCAG 59.423 44.000 0.00 0.00 0.00 3.51
5650 8315 3.093814 TGCAGACCAATAGAGACCGTAA 58.906 45.455 0.00 0.00 0.00 3.18
5725 8390 3.041946 CCATAGGCTTCCTTCAGGTACT 58.958 50.000 0.00 0.00 34.60 2.73
5739 8404 6.998673 ACATAAAGTTGAGTTATCCCATAGGC 59.001 38.462 0.00 0.00 0.00 3.93
5817 8482 8.152309 CTGAGATTCAGGAAGATATTTGGTTC 57.848 38.462 0.00 0.00 40.71 3.62
5837 8502 7.599171 TGACACGAAGAATAATACAACTGAGA 58.401 34.615 0.00 0.00 0.00 3.27
5877 8542 1.486310 TCATCAAGGCTATCGTTGGCT 59.514 47.619 1.71 0.00 42.26 4.75
5920 8585 1.450134 TGCTTCCCATGTAGCTGCG 60.450 57.895 0.00 0.00 36.02 5.18
5976 8641 1.252175 TCCGCTGAGAGATATGGAGC 58.748 55.000 0.00 0.00 0.00 4.70
5979 8644 2.007360 GCATCCGCTGAGAGATATGG 57.993 55.000 0.00 0.00 34.30 2.74
6001 8666 7.703058 TCTTTGTTTTCCTTTTCTGAGTCTT 57.297 32.000 0.00 0.00 0.00 3.01
6037 8705 0.250989 GTCAATCGGGGTGGTGGAAA 60.251 55.000 0.00 0.00 0.00 3.13
6049 8717 1.060713 AGAACAACGAGCGTCAATCG 58.939 50.000 0.00 0.00 45.54 3.34
6057 8725 1.135859 CATTCCTGCAGAACAACGAGC 60.136 52.381 17.39 0.00 37.29 5.03
6118 8786 0.033228 CTGCCAGGAGCTCGAATAGG 59.967 60.000 7.83 5.94 44.23 2.57
6228 8896 5.267587 AGGATCCATTCTTTTTCAGGAAGG 58.732 41.667 15.82 0.00 31.17 3.46
6270 8938 0.108138 CAACCTTAGGTCCTCCTGCG 60.108 60.000 3.62 0.00 44.81 5.18
6283 8951 1.038280 AGAAGACGGTCGTCAACCTT 58.962 50.000 22.74 10.17 46.87 3.50
6305 8973 2.248431 GACGCACGAGCACCAAAC 59.752 61.111 5.50 0.00 42.27 2.93
6317 8985 2.607180 GTGCATACATACATGTGACGCA 59.393 45.455 9.11 5.90 41.89 5.24
6411 9079 1.229209 TTCTTCCTCTCACGCCCCT 60.229 57.895 0.00 0.00 0.00 4.79
6545 9213 2.032377 TGTTTTCGTCGCCATCAACTTC 60.032 45.455 0.00 0.00 0.00 3.01
6570 9268 6.363167 TTTTCATCCTCGGTTAGTTCCTTA 57.637 37.500 0.00 0.00 0.00 2.69
6641 9339 7.417612 CAGAACATATAACAGCCATAACCAAC 58.582 38.462 0.00 0.00 0.00 3.77
6646 9344 7.744733 TGATCCAGAACATATAACAGCCATAA 58.255 34.615 0.00 0.00 0.00 1.90
6720 9418 7.923414 AAACTAATATGACCAAGACCAAGAC 57.077 36.000 0.00 0.00 0.00 3.01
6754 9452 7.038154 TGTAGAAGGGTCAAAAGAAAACATG 57.962 36.000 0.00 0.00 0.00 3.21
6759 9457 8.635328 GGTAAATTGTAGAAGGGTCAAAAGAAA 58.365 33.333 0.00 0.00 0.00 2.52
6814 9512 8.143193 TGTAATGTCTGTCAAATTTGAGCAAAT 58.857 29.630 21.05 8.87 42.35 2.32
6825 9523 8.669946 TCATTGTACTTGTAATGTCTGTCAAA 57.330 30.769 0.00 0.00 36.09 2.69
6874 9596 2.837591 AGAGCCTTTGTTGTGGGTTTTT 59.162 40.909 0.00 0.00 33.83 1.94
6875 9597 2.466846 AGAGCCTTTGTTGTGGGTTTT 58.533 42.857 0.00 0.00 33.83 2.43
6876 9598 2.159179 AGAGCCTTTGTTGTGGGTTT 57.841 45.000 0.00 0.00 33.83 3.27
6877 9599 2.174854 ACTAGAGCCTTTGTTGTGGGTT 59.825 45.455 0.00 0.00 33.83 4.11
6878 9600 1.774856 ACTAGAGCCTTTGTTGTGGGT 59.225 47.619 0.00 0.00 36.70 4.51
6879 9601 2.554032 CAACTAGAGCCTTTGTTGTGGG 59.446 50.000 0.00 0.00 36.15 4.61
6880 9602 3.476552 TCAACTAGAGCCTTTGTTGTGG 58.523 45.455 0.00 0.00 40.20 4.17
6881 9603 5.296780 TCTTTCAACTAGAGCCTTTGTTGTG 59.703 40.000 0.00 5.22 40.20 3.33
6894 9616 7.816995 AGCTGAAATAGTCTGTCTTTCAACTAG 59.183 37.037 0.00 0.00 38.15 2.57
6908 9630 5.755861 GGACATGGACTAAGCTGAAATAGTC 59.244 44.000 12.90 12.90 44.66 2.59
6909 9631 5.189736 TGGACATGGACTAAGCTGAAATAGT 59.810 40.000 0.00 0.00 35.13 2.12
7015 12154 6.295719 TCTATTTTGGAACAGAGGGAGTAC 57.704 41.667 0.00 0.00 42.39 2.73
7016 12155 6.672218 TCATCTATTTTGGAACAGAGGGAGTA 59.328 38.462 0.00 0.00 42.39 2.59
7017 12156 5.488919 TCATCTATTTTGGAACAGAGGGAGT 59.511 40.000 0.00 0.00 42.39 3.85
7018 12157 5.819901 GTCATCTATTTTGGAACAGAGGGAG 59.180 44.000 0.00 0.00 42.39 4.30
7019 12158 5.339200 GGTCATCTATTTTGGAACAGAGGGA 60.339 44.000 0.00 0.00 42.39 4.20
7020 12159 4.884164 GGTCATCTATTTTGGAACAGAGGG 59.116 45.833 0.00 0.00 42.39 4.30
7021 12160 4.884164 GGGTCATCTATTTTGGAACAGAGG 59.116 45.833 0.00 0.00 42.39 3.69
7022 12161 5.500234 TGGGTCATCTATTTTGGAACAGAG 58.500 41.667 0.00 0.00 42.39 3.35
7023 12162 5.512942 TGGGTCATCTATTTTGGAACAGA 57.487 39.130 0.00 0.00 42.39 3.41
7024 12163 5.711976 AGTTGGGTCATCTATTTTGGAACAG 59.288 40.000 0.00 0.00 42.39 3.16
7025 12164 5.640147 AGTTGGGTCATCTATTTTGGAACA 58.360 37.500 0.00 0.00 0.00 3.18
7026 12165 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
7027 12166 5.414454 CGAAGTTGGGTCATCTATTTTGGAA 59.586 40.000 0.00 0.00 0.00 3.53
7028 12167 4.941263 CGAAGTTGGGTCATCTATTTTGGA 59.059 41.667 0.00 0.00 0.00 3.53
7029 12168 4.700213 ACGAAGTTGGGTCATCTATTTTGG 59.300 41.667 0.00 0.00 37.78 3.28
7030 12169 5.880054 ACGAAGTTGGGTCATCTATTTTG 57.120 39.130 0.00 0.00 37.78 2.44
7031 12170 6.708285 AGTACGAAGTTGGGTCATCTATTTT 58.292 36.000 0.00 0.00 37.78 1.82
7032 12171 6.295719 AGTACGAAGTTGGGTCATCTATTT 57.704 37.500 0.00 0.00 37.78 1.40
7033 12172 5.934402 AGTACGAAGTTGGGTCATCTATT 57.066 39.130 0.00 0.00 37.78 1.73
7034 12173 7.123847 ACTTTAGTACGAAGTTGGGTCATCTAT 59.876 37.037 10.66 0.00 37.78 1.98
7035 12174 6.435277 ACTTTAGTACGAAGTTGGGTCATCTA 59.565 38.462 10.66 0.00 37.78 1.98
7036 12175 5.245526 ACTTTAGTACGAAGTTGGGTCATCT 59.754 40.000 10.66 0.00 37.78 2.90
7037 12176 5.476614 ACTTTAGTACGAAGTTGGGTCATC 58.523 41.667 10.66 0.00 37.78 2.92
7038 12177 5.479124 ACTTTAGTACGAAGTTGGGTCAT 57.521 39.130 10.66 0.00 37.78 3.06
7039 12178 4.942761 ACTTTAGTACGAAGTTGGGTCA 57.057 40.909 10.66 0.00 37.78 4.02
7040 12179 6.450545 ACTAACTTTAGTACGAAGTTGGGTC 58.549 40.000 27.73 0.00 44.77 4.46
7041 12180 6.410942 ACTAACTTTAGTACGAAGTTGGGT 57.589 37.500 27.73 23.37 44.77 4.51
7066 12205 9.796062 CGTTCCAAAATAAATGACTCAATTTTG 57.204 29.630 15.00 15.00 43.77 2.44
7067 12206 8.987890 CCGTTCCAAAATAAATGACTCAATTTT 58.012 29.630 0.00 0.00 33.07 1.82
7068 12207 8.364142 TCCGTTCCAAAATAAATGACTCAATTT 58.636 29.630 0.00 0.00 34.24 1.82
7069 12208 7.891561 TCCGTTCCAAAATAAATGACTCAATT 58.108 30.769 0.00 0.00 0.00 2.32
7070 12209 7.362920 CCTCCGTTCCAAAATAAATGACTCAAT 60.363 37.037 0.00 0.00 0.00 2.57
7071 12210 6.072175 CCTCCGTTCCAAAATAAATGACTCAA 60.072 38.462 0.00 0.00 0.00 3.02
7072 12211 5.414454 CCTCCGTTCCAAAATAAATGACTCA 59.586 40.000 0.00 0.00 0.00 3.41
7073 12212 5.163652 CCCTCCGTTCCAAAATAAATGACTC 60.164 44.000 0.00 0.00 0.00 3.36
7074 12213 4.705023 CCCTCCGTTCCAAAATAAATGACT 59.295 41.667 0.00 0.00 0.00 3.41
7075 12214 4.703093 TCCCTCCGTTCCAAAATAAATGAC 59.297 41.667 0.00 0.00 0.00 3.06
7076 12215 4.924625 TCCCTCCGTTCCAAAATAAATGA 58.075 39.130 0.00 0.00 0.00 2.57
7077 12216 4.705023 ACTCCCTCCGTTCCAAAATAAATG 59.295 41.667 0.00 0.00 0.00 2.32
7078 12217 4.930696 ACTCCCTCCGTTCCAAAATAAAT 58.069 39.130 0.00 0.00 0.00 1.40
7079 12218 4.376225 ACTCCCTCCGTTCCAAAATAAA 57.624 40.909 0.00 0.00 0.00 1.40
7080 12219 5.502089 TTACTCCCTCCGTTCCAAAATAA 57.498 39.130 0.00 0.00 0.00 1.40
7081 12220 5.703730 ATTACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
7082 12221 4.586306 ATTACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
7083 12222 4.076394 CAATTACTCCCTCCGTTCCAAAA 58.924 43.478 0.00 0.00 0.00 2.44
7084 12223 3.073356 ACAATTACTCCCTCCGTTCCAAA 59.927 43.478 0.00 0.00 0.00 3.28
7085 12224 2.640826 ACAATTACTCCCTCCGTTCCAA 59.359 45.455 0.00 0.00 0.00 3.53
7086 12225 2.262637 ACAATTACTCCCTCCGTTCCA 58.737 47.619 0.00 0.00 0.00 3.53
7087 12226 4.684484 ATACAATTACTCCCTCCGTTCC 57.316 45.455 0.00 0.00 0.00 3.62
7089 12228 8.693625 GCTATATATACAATTACTCCCTCCGTT 58.306 37.037 0.00 0.00 0.00 4.44
7090 12229 8.060075 AGCTATATATACAATTACTCCCTCCGT 58.940 37.037 0.00 0.00 0.00 4.69
7091 12230 8.353684 CAGCTATATATACAATTACTCCCTCCG 58.646 40.741 0.00 0.00 0.00 4.63
7092 12231 8.145122 GCAGCTATATATACAATTACTCCCTCC 58.855 40.741 0.00 0.00 0.00 4.30
7093 12232 8.145122 GGCAGCTATATATACAATTACTCCCTC 58.855 40.741 0.00 0.00 0.00 4.30
7094 12233 7.623677 TGGCAGCTATATATACAATTACTCCCT 59.376 37.037 0.00 0.00 0.00 4.20
7095 12234 7.792032 TGGCAGCTATATATACAATTACTCCC 58.208 38.462 0.00 0.00 0.00 4.30
7096 12235 9.667107 TTTGGCAGCTATATATACAATTACTCC 57.333 33.333 0.00 0.00 0.00 3.85
7098 12237 9.167311 GCTTTGGCAGCTATATATACAATTACT 57.833 33.333 0.00 0.00 46.27 2.24
7208 12348 4.020218 TGCTGATGTAGAAGGTAAGTGCTT 60.020 41.667 0.00 0.00 0.00 3.91
7267 12407 8.728833 GGATTTGGCATGTTATTTTCATTCAAA 58.271 29.630 0.00 0.00 34.16 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.