Multiple sequence alignment - TraesCS2B01G111200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G111200 chr2B 100.000 3873 0 0 1 3873 72973291 72977163 0.000000e+00 7153
1 TraesCS2B01G111200 chr2B 84.051 2345 304 44 596 2895 73803841 73806160 0.000000e+00 2194
2 TraesCS2B01G111200 chr2B 83.805 2334 336 21 596 2897 72722433 72720110 0.000000e+00 2178
3 TraesCS2B01G111200 chr2B 83.988 2317 309 28 596 2897 73271448 73273717 0.000000e+00 2167
4 TraesCS2B01G111200 chr2B 93.286 283 16 3 3 284 16312509 16312789 7.740000e-112 414
5 TraesCS2B01G111200 chr2D 97.476 2258 55 2 666 2923 46180126 46182381 0.000000e+00 3853
6 TraesCS2B01G111200 chr2D 83.981 2316 316 23 595 2897 46187138 46184865 0.000000e+00 2170
7 TraesCS2B01G111200 chr2D 80.293 2324 382 44 596 2890 45818764 45821040 0.000000e+00 1685
8 TraesCS2B01G111200 chr2A 95.267 2345 92 7 596 2923 191636956 191639298 0.000000e+00 3698
9 TraesCS2B01G111200 chr2A 83.997 2312 327 21 618 2897 49071635 49069335 0.000000e+00 2180
10 TraesCS2B01G111200 chr2A 89.261 1015 100 8 1886 2897 192249324 192250332 0.000000e+00 1262
11 TraesCS2B01G111200 chr2A 81.870 1230 195 17 1677 2898 49271196 49272405 0.000000e+00 1011
12 TraesCS2B01G111200 chr2A 78.083 1054 199 21 596 1644 49498511 49499537 4.220000e-179 638
13 TraesCS2B01G111200 chr2A 77.640 1051 183 30 617 1635 49270092 49271122 3.330000e-165 592
14 TraesCS2B01G111200 chr2A 79.227 828 160 9 596 1416 192248062 192248884 2.020000e-157 566
15 TraesCS2B01G111200 chr2A 79.258 593 119 4 743 1333 49369798 49369208 1.000000e-110 411
16 TraesCS2B01G111200 chr2A 92.578 256 17 2 30 284 334303943 334303689 2.200000e-97 366
17 TraesCS2B01G111200 chr2A 85.000 280 39 3 7 284 679453322 679453600 8.190000e-72 281
18 TraesCS2B01G111200 chr2A 82.595 316 45 8 3561 3870 632613706 632614017 1.770000e-68 270
19 TraesCS2B01G111200 chr2A 86.722 241 23 2 3341 3572 2873174 2873414 3.840000e-65 259
20 TraesCS2B01G111200 chr2A 81.851 281 31 12 331 603 191636659 191636927 6.520000e-53 219
21 TraesCS2B01G111200 chr2A 91.597 119 9 1 485 603 49498365 49498482 3.100000e-36 163
22 TraesCS2B01G111200 chr5B 98.646 960 11 2 2915 3873 314281919 314280961 0.000000e+00 1700
23 TraesCS2B01G111200 chr5B 82.504 703 90 19 3187 3873 452825292 452824607 1.550000e-163 586
24 TraesCS2B01G111200 chr5B 87.143 280 34 2 7 285 50329311 50329033 2.250000e-82 316
25 TraesCS2B01G111200 chr4B 96.480 966 16 5 2915 3873 55326501 55325547 0.000000e+00 1580
26 TraesCS2B01G111200 chr4B 83.119 699 65 35 3187 3873 453510080 453510737 4.310000e-164 588
27 TraesCS2B01G111200 chr7B 96.099 974 23 8 2904 3873 60624558 60623596 0.000000e+00 1574
28 TraesCS2B01G111200 chr7A 89.113 992 62 14 2915 3873 492424122 492423144 0.000000e+00 1192
29 TraesCS2B01G111200 chr7A 87.562 812 54 15 2915 3692 690404237 690405035 0.000000e+00 896
30 TraesCS2B01G111200 chrUn 89.762 420 18 9 2915 3311 476788504 476788087 7.420000e-142 514
31 TraesCS2B01G111200 chr3D 95.035 282 12 2 5 285 141351548 141351828 3.550000e-120 442
32 TraesCS2B01G111200 chr3D 85.308 422 42 13 3187 3595 534119050 534119464 5.980000e-113 418
33 TraesCS2B01G111200 chr3D 82.428 313 48 7 3561 3870 312713010 312713318 2.290000e-67 267
34 TraesCS2B01G111200 chr5D 94.681 282 13 2 5 285 44078302 44078022 1.650000e-118 436
35 TraesCS2B01G111200 chr6A 90.780 282 25 1 4 284 254318039 254318320 3.650000e-100 375
36 TraesCS2B01G111200 chr6A 94.643 224 11 1 1 223 234099781 234100004 2.860000e-91 346
37 TraesCS2B01G111200 chr1B 88.339 283 32 1 3 284 643354684 643354402 4.790000e-89 339
38 TraesCS2B01G111200 chr6D 81.379 435 50 16 3187 3593 7112839 7112408 3.730000e-85 326
39 TraesCS2B01G111200 chr1A 83.387 313 45 7 3561 3870 568340570 568340262 2.280000e-72 283
40 TraesCS2B01G111200 chr5A 81.646 316 48 8 3561 3870 415591974 415591663 1.790000e-63 254


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G111200 chr2B 72973291 72977163 3872 False 7153.0 7153 100.000 1 3873 1 chr2B.!!$F2 3872
1 TraesCS2B01G111200 chr2B 73803841 73806160 2319 False 2194.0 2194 84.051 596 2895 1 chr2B.!!$F4 2299
2 TraesCS2B01G111200 chr2B 72720110 72722433 2323 True 2178.0 2178 83.805 596 2897 1 chr2B.!!$R1 2301
3 TraesCS2B01G111200 chr2B 73271448 73273717 2269 False 2167.0 2167 83.988 596 2897 1 chr2B.!!$F3 2301
4 TraesCS2B01G111200 chr2D 46180126 46182381 2255 False 3853.0 3853 97.476 666 2923 1 chr2D.!!$F2 2257
5 TraesCS2B01G111200 chr2D 46184865 46187138 2273 True 2170.0 2170 83.981 595 2897 1 chr2D.!!$R1 2302
6 TraesCS2B01G111200 chr2D 45818764 45821040 2276 False 1685.0 1685 80.293 596 2890 1 chr2D.!!$F1 2294
7 TraesCS2B01G111200 chr2A 49069335 49071635 2300 True 2180.0 2180 83.997 618 2897 1 chr2A.!!$R1 2279
8 TraesCS2B01G111200 chr2A 191636659 191639298 2639 False 1958.5 3698 88.559 331 2923 2 chr2A.!!$F6 2592
9 TraesCS2B01G111200 chr2A 192248062 192250332 2270 False 914.0 1262 84.244 596 2897 2 chr2A.!!$F7 2301
10 TraesCS2B01G111200 chr2A 49270092 49272405 2313 False 801.5 1011 79.755 617 2898 2 chr2A.!!$F4 2281
11 TraesCS2B01G111200 chr2A 49369208 49369798 590 True 411.0 411 79.258 743 1333 1 chr2A.!!$R2 590
12 TraesCS2B01G111200 chr2A 49498365 49499537 1172 False 400.5 638 84.840 485 1644 2 chr2A.!!$F5 1159
13 TraesCS2B01G111200 chr5B 314280961 314281919 958 True 1700.0 1700 98.646 2915 3873 1 chr5B.!!$R2 958
14 TraesCS2B01G111200 chr5B 452824607 452825292 685 True 586.0 586 82.504 3187 3873 1 chr5B.!!$R3 686
15 TraesCS2B01G111200 chr4B 55325547 55326501 954 True 1580.0 1580 96.480 2915 3873 1 chr4B.!!$R1 958
16 TraesCS2B01G111200 chr4B 453510080 453510737 657 False 588.0 588 83.119 3187 3873 1 chr4B.!!$F1 686
17 TraesCS2B01G111200 chr7B 60623596 60624558 962 True 1574.0 1574 96.099 2904 3873 1 chr7B.!!$R1 969
18 TraesCS2B01G111200 chr7A 492423144 492424122 978 True 1192.0 1192 89.113 2915 3873 1 chr7A.!!$R1 958
19 TraesCS2B01G111200 chr7A 690404237 690405035 798 False 896.0 896 87.562 2915 3692 1 chr7A.!!$F1 777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
328 329 0.031043 GGCCGTTTTTAGGTTTGCGT 59.969 50.000 0.00 0.00 0.00 5.24 F
768 820 0.459899 CCACCGTGATCGATCTTCCA 59.540 55.000 25.02 3.62 39.71 3.53 F
1409 1467 1.067915 GCTCAGCATAGTCGAGGGATC 60.068 57.143 0.00 0.00 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1860 2078 1.024271 GTTCCACTGCTTGCAGACAA 58.976 50.000 26.71 13.59 0.0 3.18 R
2333 2551 1.202758 TGCCATGAAGAAGGTCACGTT 60.203 47.619 0.00 0.00 0.0 3.99 R
3321 3580 2.909965 ACCACATTTTGCGCCGGT 60.910 55.556 4.18 0.00 0.0 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 7.976135 AACATTCAGCATATACTCATCTTCC 57.024 36.000 0.00 0.00 0.00 3.46
44 45 7.313740 ACATTCAGCATATACTCATCTTCCT 57.686 36.000 0.00 0.00 0.00 3.36
45 46 7.385267 ACATTCAGCATATACTCATCTTCCTC 58.615 38.462 0.00 0.00 0.00 3.71
46 47 7.235193 ACATTCAGCATATACTCATCTTCCTCT 59.765 37.037 0.00 0.00 0.00 3.69
47 48 6.587206 TCAGCATATACTCATCTTCCTCTG 57.413 41.667 0.00 0.00 0.00 3.35
48 49 5.047448 TCAGCATATACTCATCTTCCTCTGC 60.047 44.000 0.00 0.00 0.00 4.26
49 50 4.837298 AGCATATACTCATCTTCCTCTGCA 59.163 41.667 0.00 0.00 0.00 4.41
50 51 5.484644 AGCATATACTCATCTTCCTCTGCAT 59.515 40.000 0.00 0.00 0.00 3.96
51 52 5.811613 GCATATACTCATCTTCCTCTGCATC 59.188 44.000 0.00 0.00 0.00 3.91
52 53 4.888326 ATACTCATCTTCCTCTGCATCC 57.112 45.455 0.00 0.00 0.00 3.51
53 54 2.475155 ACTCATCTTCCTCTGCATCCA 58.525 47.619 0.00 0.00 0.00 3.41
54 55 2.170187 ACTCATCTTCCTCTGCATCCAC 59.830 50.000 0.00 0.00 0.00 4.02
55 56 2.169978 CTCATCTTCCTCTGCATCCACA 59.830 50.000 0.00 0.00 0.00 4.17
56 57 2.775960 TCATCTTCCTCTGCATCCACAT 59.224 45.455 0.00 0.00 0.00 3.21
57 58 3.969312 TCATCTTCCTCTGCATCCACATA 59.031 43.478 0.00 0.00 0.00 2.29
58 59 3.827008 TCTTCCTCTGCATCCACATAC 57.173 47.619 0.00 0.00 0.00 2.39
59 60 2.435805 TCTTCCTCTGCATCCACATACC 59.564 50.000 0.00 0.00 0.00 2.73
60 61 1.878211 TCCTCTGCATCCACATACCA 58.122 50.000 0.00 0.00 0.00 3.25
61 62 2.411583 TCCTCTGCATCCACATACCAT 58.588 47.619 0.00 0.00 0.00 3.55
62 63 2.369860 TCCTCTGCATCCACATACCATC 59.630 50.000 0.00 0.00 0.00 3.51
63 64 2.410939 CTCTGCATCCACATACCATCG 58.589 52.381 0.00 0.00 0.00 3.84
64 65 2.036346 CTCTGCATCCACATACCATCGA 59.964 50.000 0.00 0.00 0.00 3.59
65 66 2.138320 CTGCATCCACATACCATCGAC 58.862 52.381 0.00 0.00 0.00 4.20
66 67 1.762370 TGCATCCACATACCATCGACT 59.238 47.619 0.00 0.00 0.00 4.18
67 68 2.962421 TGCATCCACATACCATCGACTA 59.038 45.455 0.00 0.00 0.00 2.59
68 69 3.243737 TGCATCCACATACCATCGACTAC 60.244 47.826 0.00 0.00 0.00 2.73
69 70 3.005897 GCATCCACATACCATCGACTACT 59.994 47.826 0.00 0.00 0.00 2.57
70 71 4.501571 GCATCCACATACCATCGACTACTT 60.502 45.833 0.00 0.00 0.00 2.24
71 72 4.649088 TCCACATACCATCGACTACTTG 57.351 45.455 0.00 0.00 0.00 3.16
72 73 4.274978 TCCACATACCATCGACTACTTGA 58.725 43.478 0.00 0.00 0.00 3.02
73 74 4.707934 TCCACATACCATCGACTACTTGAA 59.292 41.667 0.00 0.00 0.00 2.69
74 75 5.043903 CCACATACCATCGACTACTTGAAG 58.956 45.833 0.00 0.00 0.00 3.02
75 76 4.504461 CACATACCATCGACTACTTGAAGC 59.496 45.833 0.00 0.00 0.00 3.86
76 77 4.402793 ACATACCATCGACTACTTGAAGCT 59.597 41.667 0.00 0.00 0.00 3.74
77 78 5.593095 ACATACCATCGACTACTTGAAGCTA 59.407 40.000 0.00 0.00 0.00 3.32
78 79 4.373348 ACCATCGACTACTTGAAGCTAC 57.627 45.455 0.00 0.00 0.00 3.58
79 80 3.762288 ACCATCGACTACTTGAAGCTACA 59.238 43.478 0.00 0.00 0.00 2.74
80 81 4.402793 ACCATCGACTACTTGAAGCTACAT 59.597 41.667 0.00 0.00 0.00 2.29
81 82 5.593095 ACCATCGACTACTTGAAGCTACATA 59.407 40.000 0.00 0.00 0.00 2.29
82 83 6.265649 ACCATCGACTACTTGAAGCTACATAT 59.734 38.462 0.00 0.00 0.00 1.78
83 84 6.584184 CCATCGACTACTTGAAGCTACATATG 59.416 42.308 0.00 0.00 0.00 1.78
84 85 6.073327 TCGACTACTTGAAGCTACATATGG 57.927 41.667 7.80 0.00 0.00 2.74
85 86 4.681942 CGACTACTTGAAGCTACATATGGC 59.318 45.833 7.80 1.54 0.00 4.40
86 87 5.508153 CGACTACTTGAAGCTACATATGGCT 60.508 44.000 7.80 4.10 46.21 4.75
94 95 3.581101 AGCTACATATGGCTTCCAGAGA 58.419 45.455 7.80 0.00 40.28 3.10
95 96 3.577848 AGCTACATATGGCTTCCAGAGAG 59.422 47.826 7.80 0.00 40.28 3.20
96 97 3.306641 GCTACATATGGCTTCCAGAGAGG 60.307 52.174 7.80 0.00 36.75 3.69
97 98 7.707415 AGCTACATATGGCTTCCAGAGAGGA 62.707 48.000 7.80 0.00 40.28 3.71
110 111 6.287589 TCCAGAGAGGAGAATTGTAAGTTC 57.712 41.667 0.00 0.00 43.07 3.01
111 112 5.187967 TCCAGAGAGGAGAATTGTAAGTTCC 59.812 44.000 0.00 0.00 43.07 3.62
112 113 5.188751 CCAGAGAGGAGAATTGTAAGTTCCT 59.811 44.000 0.00 0.00 40.85 3.36
113 114 6.296145 CCAGAGAGGAGAATTGTAAGTTCCTT 60.296 42.308 0.00 0.00 38.35 3.36
114 115 6.816140 CAGAGAGGAGAATTGTAAGTTCCTTC 59.184 42.308 0.00 0.00 38.35 3.46
115 116 5.725362 AGAGGAGAATTGTAAGTTCCTTCG 58.275 41.667 0.00 0.00 38.35 3.79
116 117 4.254492 AGGAGAATTGTAAGTTCCTTCGC 58.746 43.478 0.00 0.00 34.71 4.70
117 118 3.374367 GGAGAATTGTAAGTTCCTTCGCC 59.626 47.826 0.00 0.00 0.00 5.54
118 119 3.344515 AGAATTGTAAGTTCCTTCGCCC 58.655 45.455 0.00 0.00 0.00 6.13
119 120 2.871096 ATTGTAAGTTCCTTCGCCCA 57.129 45.000 0.00 0.00 0.00 5.36
120 121 2.178912 TTGTAAGTTCCTTCGCCCAG 57.821 50.000 0.00 0.00 0.00 4.45
121 122 1.053424 TGTAAGTTCCTTCGCCCAGT 58.947 50.000 0.00 0.00 0.00 4.00
122 123 1.270625 TGTAAGTTCCTTCGCCCAGTG 60.271 52.381 0.00 0.00 0.00 3.66
123 124 0.323629 TAAGTTCCTTCGCCCAGTGG 59.676 55.000 0.63 0.63 0.00 4.00
134 135 2.877975 CCCAGTGGCAAAGAGGATG 58.122 57.895 2.61 0.00 0.00 3.51
135 136 0.682209 CCCAGTGGCAAAGAGGATGG 60.682 60.000 2.61 0.00 0.00 3.51
136 137 1.318158 CCAGTGGCAAAGAGGATGGC 61.318 60.000 0.00 0.00 43.15 4.40
138 139 4.749323 TGGCAAAGAGGATGGCAG 57.251 55.556 0.00 0.00 46.85 4.85
139 140 1.679977 TGGCAAAGAGGATGGCAGC 60.680 57.895 0.00 0.00 46.85 5.25
140 141 2.768492 GGCAAAGAGGATGGCAGCG 61.768 63.158 0.00 0.00 42.45 5.18
141 142 2.768492 GCAAAGAGGATGGCAGCGG 61.768 63.158 0.00 0.00 0.00 5.52
142 143 2.439156 AAAGAGGATGGCAGCGGC 60.439 61.111 0.00 0.00 40.13 6.53
143 144 3.272364 AAAGAGGATGGCAGCGGCA 62.272 57.895 11.88 9.25 43.71 5.69
144 145 2.769652 AAAGAGGATGGCAGCGGCAA 62.770 55.000 11.88 0.00 42.43 4.52
145 146 3.207669 GAGGATGGCAGCGGCAAG 61.208 66.667 11.88 0.00 42.43 4.01
146 147 3.687321 GAGGATGGCAGCGGCAAGA 62.687 63.158 11.88 0.00 42.43 3.02
147 148 2.751436 GGATGGCAGCGGCAAGAA 60.751 61.111 11.88 0.00 42.43 2.52
148 149 2.768492 GGATGGCAGCGGCAAGAAG 61.768 63.158 11.88 0.00 42.43 2.85
149 150 3.407046 GATGGCAGCGGCAAGAAGC 62.407 63.158 11.88 0.00 42.43 3.86
158 159 3.182312 GCAAGAAGCCTCCGAAGC 58.818 61.111 0.00 0.00 37.23 3.86
159 160 2.402572 GCAAGAAGCCTCCGAAGCC 61.403 63.158 0.00 0.00 37.23 4.35
160 161 1.298014 CAAGAAGCCTCCGAAGCCT 59.702 57.895 0.00 0.00 0.00 4.58
161 162 0.322008 CAAGAAGCCTCCGAAGCCTT 60.322 55.000 0.00 0.00 0.00 4.35
162 163 0.402121 AAGAAGCCTCCGAAGCCTTT 59.598 50.000 0.00 0.00 0.00 3.11
163 164 0.322008 AGAAGCCTCCGAAGCCTTTG 60.322 55.000 0.00 0.00 0.00 2.77
164 165 1.303643 AAGCCTCCGAAGCCTTTGG 60.304 57.895 4.14 4.14 35.37 3.28
165 166 1.779061 AAGCCTCCGAAGCCTTTGGA 61.779 55.000 12.93 12.93 40.99 3.53
166 167 2.041115 GCCTCCGAAGCCTTTGGAC 61.041 63.158 9.50 0.00 38.32 4.02
167 168 1.741770 CCTCCGAAGCCTTTGGACG 60.742 63.158 9.50 2.42 38.32 4.79
168 169 1.741770 CTCCGAAGCCTTTGGACGG 60.742 63.158 9.50 2.57 38.32 4.79
176 177 3.118454 CTTTGGACGGCGCGACAT 61.118 61.111 14.85 0.00 0.00 3.06
177 178 3.367051 CTTTGGACGGCGCGACATG 62.367 63.158 14.85 0.00 0.00 3.21
178 179 3.867700 TTTGGACGGCGCGACATGA 62.868 57.895 14.85 0.00 0.00 3.07
179 180 3.867700 TTGGACGGCGCGACATGAA 62.868 57.895 14.85 0.00 0.00 2.57
180 181 2.890474 GGACGGCGCGACATGAAT 60.890 61.111 14.85 0.00 0.00 2.57
181 182 2.621000 GACGGCGCGACATGAATC 59.379 61.111 14.85 0.00 0.00 2.52
182 183 2.871427 GACGGCGCGACATGAATCC 61.871 63.158 14.85 0.00 0.00 3.01
183 184 2.586079 CGGCGCGACATGAATCCT 60.586 61.111 14.85 0.00 0.00 3.24
184 185 2.874694 CGGCGCGACATGAATCCTG 61.875 63.158 14.85 0.00 0.00 3.86
185 186 1.521457 GGCGCGACATGAATCCTGA 60.521 57.895 12.10 0.00 0.00 3.86
186 187 1.089481 GGCGCGACATGAATCCTGAA 61.089 55.000 12.10 0.00 0.00 3.02
187 188 0.302890 GCGCGACATGAATCCTGAAG 59.697 55.000 12.10 0.00 0.00 3.02
188 189 0.933097 CGCGACATGAATCCTGAAGG 59.067 55.000 0.00 0.00 0.00 3.46
189 190 1.740380 CGCGACATGAATCCTGAAGGT 60.740 52.381 0.00 0.00 36.34 3.50
190 191 2.359900 GCGACATGAATCCTGAAGGTT 58.640 47.619 0.00 0.00 36.34 3.50
191 192 2.749621 GCGACATGAATCCTGAAGGTTT 59.250 45.455 0.00 0.00 36.34 3.27
192 193 3.191371 GCGACATGAATCCTGAAGGTTTT 59.809 43.478 0.00 0.00 36.34 2.43
193 194 4.321230 GCGACATGAATCCTGAAGGTTTTT 60.321 41.667 0.00 0.00 36.34 1.94
194 195 5.106317 GCGACATGAATCCTGAAGGTTTTTA 60.106 40.000 0.00 0.00 36.34 1.52
195 196 6.546395 CGACATGAATCCTGAAGGTTTTTAG 58.454 40.000 0.00 0.00 36.34 1.85
196 197 6.149474 CGACATGAATCCTGAAGGTTTTTAGT 59.851 38.462 0.00 0.00 36.34 2.24
197 198 7.333423 CGACATGAATCCTGAAGGTTTTTAGTA 59.667 37.037 0.00 0.00 36.34 1.82
198 199 8.336801 ACATGAATCCTGAAGGTTTTTAGTAC 57.663 34.615 0.00 0.00 36.34 2.73
199 200 7.942341 ACATGAATCCTGAAGGTTTTTAGTACA 59.058 33.333 0.00 0.00 36.34 2.90
200 201 8.792633 CATGAATCCTGAAGGTTTTTAGTACAA 58.207 33.333 0.00 0.00 36.34 2.41
201 202 8.161699 TGAATCCTGAAGGTTTTTAGTACAAC 57.838 34.615 0.00 0.00 36.34 3.32
202 203 6.796705 ATCCTGAAGGTTTTTAGTACAACG 57.203 37.500 0.00 0.00 36.34 4.10
203 204 5.058490 TCCTGAAGGTTTTTAGTACAACGG 58.942 41.667 0.00 0.00 36.34 4.44
204 205 4.319984 CCTGAAGGTTTTTAGTACAACGGC 60.320 45.833 0.00 0.00 0.00 5.68
205 206 4.197750 TGAAGGTTTTTAGTACAACGGCA 58.802 39.130 0.00 0.00 0.00 5.69
206 207 4.639310 TGAAGGTTTTTAGTACAACGGCAA 59.361 37.500 0.00 0.00 0.00 4.52
207 208 5.125097 TGAAGGTTTTTAGTACAACGGCAAA 59.875 36.000 0.00 0.00 0.00 3.68
208 209 5.177725 AGGTTTTTAGTACAACGGCAAAG 57.822 39.130 0.00 0.00 0.00 2.77
209 210 4.883006 AGGTTTTTAGTACAACGGCAAAGA 59.117 37.500 0.00 0.00 0.00 2.52
210 211 5.008316 AGGTTTTTAGTACAACGGCAAAGAG 59.992 40.000 0.00 0.00 0.00 2.85
211 212 5.209977 GTTTTTAGTACAACGGCAAAGAGG 58.790 41.667 0.00 0.00 0.00 3.69
212 213 4.339872 TTTAGTACAACGGCAAAGAGGA 57.660 40.909 0.00 0.00 0.00 3.71
213 214 2.922740 AGTACAACGGCAAAGAGGAA 57.077 45.000 0.00 0.00 0.00 3.36
214 215 2.767505 AGTACAACGGCAAAGAGGAAG 58.232 47.619 0.00 0.00 0.00 3.46
215 216 2.104281 AGTACAACGGCAAAGAGGAAGT 59.896 45.455 0.00 0.00 0.00 3.01
216 217 1.594331 ACAACGGCAAAGAGGAAGTC 58.406 50.000 0.00 0.00 0.00 3.01
217 218 1.141053 ACAACGGCAAAGAGGAAGTCT 59.859 47.619 0.00 0.00 36.94 3.24
219 220 2.171341 ACGGCAAAGAGGAAGTCTTC 57.829 50.000 3.80 3.80 45.44 2.87
220 221 1.694696 ACGGCAAAGAGGAAGTCTTCT 59.305 47.619 12.31 0.00 45.44 2.85
221 222 2.104963 ACGGCAAAGAGGAAGTCTTCTT 59.895 45.455 12.31 4.62 45.44 2.52
222 223 3.323979 ACGGCAAAGAGGAAGTCTTCTTA 59.676 43.478 12.31 0.00 45.44 2.10
223 224 4.202326 ACGGCAAAGAGGAAGTCTTCTTAA 60.202 41.667 12.31 0.00 45.44 1.85
224 225 4.938226 CGGCAAAGAGGAAGTCTTCTTAAT 59.062 41.667 12.31 0.00 45.44 1.40
225 226 5.412904 CGGCAAAGAGGAAGTCTTCTTAATT 59.587 40.000 12.31 1.36 45.44 1.40
226 227 6.402658 CGGCAAAGAGGAAGTCTTCTTAATTC 60.403 42.308 12.31 3.77 45.44 2.17
227 228 6.431234 GGCAAAGAGGAAGTCTTCTTAATTCA 59.569 38.462 12.31 0.00 45.44 2.57
228 229 7.361628 GGCAAAGAGGAAGTCTTCTTAATTCAG 60.362 40.741 12.31 2.70 45.44 3.02
229 230 7.389053 GCAAAGAGGAAGTCTTCTTAATTCAGA 59.611 37.037 12.31 0.00 45.44 3.27
230 231 9.447157 CAAAGAGGAAGTCTTCTTAATTCAGAT 57.553 33.333 12.31 0.00 45.44 2.90
233 234 8.410141 AGAGGAAGTCTTCTTAATTCAGATACG 58.590 37.037 12.31 0.00 33.64 3.06
234 235 7.493367 AGGAAGTCTTCTTAATTCAGATACGG 58.507 38.462 12.31 0.00 33.64 4.02
235 236 7.124448 AGGAAGTCTTCTTAATTCAGATACGGT 59.876 37.037 12.31 0.00 33.64 4.83
236 237 7.764901 GGAAGTCTTCTTAATTCAGATACGGTT 59.235 37.037 12.31 0.00 33.64 4.44
237 238 8.480643 AAGTCTTCTTAATTCAGATACGGTTG 57.519 34.615 0.00 0.00 31.46 3.77
238 239 6.535508 AGTCTTCTTAATTCAGATACGGTTGC 59.464 38.462 0.00 0.00 0.00 4.17
239 240 6.535508 GTCTTCTTAATTCAGATACGGTTGCT 59.464 38.462 0.00 0.00 0.00 3.91
240 241 6.535150 TCTTCTTAATTCAGATACGGTTGCTG 59.465 38.462 4.20 4.20 0.00 4.41
241 242 4.570772 TCTTAATTCAGATACGGTTGCTGC 59.429 41.667 0.00 0.00 0.00 5.25
242 243 2.698855 ATTCAGATACGGTTGCTGCT 57.301 45.000 0.00 0.00 0.00 4.24
243 244 3.819564 ATTCAGATACGGTTGCTGCTA 57.180 42.857 0.00 0.00 0.00 3.49
244 245 2.871182 TCAGATACGGTTGCTGCTAG 57.129 50.000 0.00 0.00 0.00 3.42
245 246 1.202417 TCAGATACGGTTGCTGCTAGC 60.202 52.381 8.10 8.10 42.82 3.42
246 247 1.115467 AGATACGGTTGCTGCTAGCT 58.885 50.000 17.23 0.00 42.97 3.32
247 248 1.067821 AGATACGGTTGCTGCTAGCTC 59.932 52.381 17.23 8.40 42.97 4.09
248 249 1.067821 GATACGGTTGCTGCTAGCTCT 59.932 52.381 17.23 0.00 42.97 4.09
249 250 1.758936 TACGGTTGCTGCTAGCTCTA 58.241 50.000 17.23 2.01 42.97 2.43
250 251 0.173708 ACGGTTGCTGCTAGCTCTAC 59.826 55.000 17.23 13.62 42.97 2.59
251 252 0.457851 CGGTTGCTGCTAGCTCTACT 59.542 55.000 17.23 0.00 42.97 2.57
252 253 1.535015 CGGTTGCTGCTAGCTCTACTC 60.535 57.143 17.23 7.96 42.97 2.59
253 254 1.202475 GGTTGCTGCTAGCTCTACTCC 60.202 57.143 17.23 7.83 42.97 3.85
254 255 1.478510 GTTGCTGCTAGCTCTACTCCA 59.521 52.381 17.23 0.00 42.97 3.86
255 256 1.107114 TGCTGCTAGCTCTACTCCAC 58.893 55.000 17.23 0.00 42.97 4.02
256 257 1.341482 TGCTGCTAGCTCTACTCCACT 60.341 52.381 17.23 0.00 42.97 4.00
257 258 1.754226 GCTGCTAGCTCTACTCCACTT 59.246 52.381 17.23 0.00 38.45 3.16
258 259 2.167487 GCTGCTAGCTCTACTCCACTTT 59.833 50.000 17.23 0.00 38.45 2.66
259 260 3.736740 GCTGCTAGCTCTACTCCACTTTC 60.737 52.174 17.23 0.00 38.45 2.62
260 261 2.761208 TGCTAGCTCTACTCCACTTTCC 59.239 50.000 17.23 0.00 0.00 3.13
261 262 2.761208 GCTAGCTCTACTCCACTTTCCA 59.239 50.000 7.70 0.00 0.00 3.53
262 263 3.386402 GCTAGCTCTACTCCACTTTCCAT 59.614 47.826 7.70 0.00 0.00 3.41
263 264 4.141824 GCTAGCTCTACTCCACTTTCCATT 60.142 45.833 7.70 0.00 0.00 3.16
264 265 5.069251 GCTAGCTCTACTCCACTTTCCATTA 59.931 44.000 7.70 0.00 0.00 1.90
265 266 5.346181 AGCTCTACTCCACTTTCCATTAC 57.654 43.478 0.00 0.00 0.00 1.89
266 267 4.777896 AGCTCTACTCCACTTTCCATTACA 59.222 41.667 0.00 0.00 0.00 2.41
267 268 5.426833 AGCTCTACTCCACTTTCCATTACAT 59.573 40.000 0.00 0.00 0.00 2.29
268 269 6.069963 AGCTCTACTCCACTTTCCATTACATT 60.070 38.462 0.00 0.00 0.00 2.71
269 270 6.599638 GCTCTACTCCACTTTCCATTACATTT 59.400 38.462 0.00 0.00 0.00 2.32
270 271 7.769044 GCTCTACTCCACTTTCCATTACATTTA 59.231 37.037 0.00 0.00 0.00 1.40
271 272 9.667107 CTCTACTCCACTTTCCATTACATTTAA 57.333 33.333 0.00 0.00 0.00 1.52
290 291 8.671028 ACATTTAATTTAAGTACACATCCGTCC 58.329 33.333 0.00 0.00 0.00 4.79
291 292 8.889717 CATTTAATTTAAGTACACATCCGTCCT 58.110 33.333 0.00 0.00 0.00 3.85
292 293 8.851541 TTTAATTTAAGTACACATCCGTCCTT 57.148 30.769 0.00 0.00 0.00 3.36
293 294 6.737254 AATTTAAGTACACATCCGTCCTTG 57.263 37.500 0.00 0.00 0.00 3.61
294 295 2.762535 AAGTACACATCCGTCCTTGG 57.237 50.000 0.00 0.00 0.00 3.61
295 296 1.933021 AGTACACATCCGTCCTTGGA 58.067 50.000 0.00 0.00 43.58 3.53
296 297 2.253610 AGTACACATCCGTCCTTGGAA 58.746 47.619 0.00 0.00 42.46 3.53
297 298 2.233922 AGTACACATCCGTCCTTGGAAG 59.766 50.000 0.00 0.00 42.46 3.46
298 299 0.321653 ACACATCCGTCCTTGGAAGC 60.322 55.000 0.00 0.00 42.46 3.86
299 300 0.321564 CACATCCGTCCTTGGAAGCA 60.322 55.000 0.00 0.00 42.46 3.91
300 301 0.036010 ACATCCGTCCTTGGAAGCAG 60.036 55.000 0.00 0.00 42.46 4.24
301 302 1.078143 ATCCGTCCTTGGAAGCAGC 60.078 57.895 0.00 0.00 42.46 5.25
302 303 2.543067 ATCCGTCCTTGGAAGCAGCC 62.543 60.000 0.00 0.00 42.46 4.85
303 304 3.121030 CGTCCTTGGAAGCAGCCG 61.121 66.667 0.00 0.00 0.00 5.52
304 305 2.747855 GTCCTTGGAAGCAGCCGG 60.748 66.667 0.00 0.00 0.00 6.13
305 306 3.249189 TCCTTGGAAGCAGCCGGT 61.249 61.111 1.90 0.00 0.00 5.28
306 307 1.916273 TCCTTGGAAGCAGCCGGTA 60.916 57.895 1.90 0.00 0.00 4.02
307 308 1.745489 CCTTGGAAGCAGCCGGTAC 60.745 63.158 1.90 0.00 0.00 3.34
321 322 2.470156 GGTACGGGCCGTTTTTAGG 58.530 57.895 38.73 2.42 41.54 2.69
322 323 0.321564 GGTACGGGCCGTTTTTAGGT 60.322 55.000 38.73 12.24 41.54 3.08
323 324 1.522668 GTACGGGCCGTTTTTAGGTT 58.477 50.000 38.73 11.40 41.54 3.50
324 325 1.879380 GTACGGGCCGTTTTTAGGTTT 59.121 47.619 38.73 10.55 41.54 3.27
325 326 0.669619 ACGGGCCGTTTTTAGGTTTG 59.330 50.000 28.83 0.00 36.35 2.93
326 327 0.665068 CGGGCCGTTTTTAGGTTTGC 60.665 55.000 19.97 0.00 0.00 3.68
327 328 0.665068 GGGCCGTTTTTAGGTTTGCG 60.665 55.000 0.00 0.00 0.00 4.85
328 329 0.031043 GGCCGTTTTTAGGTTTGCGT 59.969 50.000 0.00 0.00 0.00 5.24
329 330 1.401530 GCCGTTTTTAGGTTTGCGTC 58.598 50.000 0.00 0.00 0.00 5.19
346 347 3.770765 CGTCGCGCTGTATTTGATTAT 57.229 42.857 5.56 0.00 0.00 1.28
347 348 4.115405 CGTCGCGCTGTATTTGATTATT 57.885 40.909 5.56 0.00 0.00 1.40
350 351 5.331980 CGTCGCGCTGTATTTGATTATTACA 60.332 40.000 5.56 0.00 0.00 2.41
392 393 1.466866 CGTGTCGTATTCTGAAGCCGA 60.467 52.381 9.30 9.30 0.00 5.54
393 394 1.918609 GTGTCGTATTCTGAAGCCGAC 59.081 52.381 25.28 25.28 45.88 4.79
395 396 0.806868 TCGTATTCTGAAGCCGACGT 59.193 50.000 9.30 0.00 0.00 4.34
399 400 3.001365 CGTATTCTGAAGCCGACGTAAAC 60.001 47.826 5.80 0.00 0.00 2.01
400 401 1.411394 TTCTGAAGCCGACGTAAACG 58.589 50.000 0.04 0.04 46.33 3.60
416 417 4.946038 CGGAAGCCGGTGGAATAA 57.054 55.556 1.90 0.00 44.15 1.40
417 418 2.390427 CGGAAGCCGGTGGAATAAC 58.610 57.895 1.90 0.00 44.15 1.89
418 419 1.093496 CGGAAGCCGGTGGAATAACC 61.093 60.000 1.90 0.00 44.15 2.85
419 420 3.717695 CGGAAGCCGGTGGAATAACCA 62.718 57.143 1.90 0.00 44.39 3.67
447 448 0.531311 AAAGGTTCGTGACGGACACC 60.531 55.000 19.10 15.12 45.73 4.16
448 449 1.678598 AAGGTTCGTGACGGACACCA 61.679 55.000 19.10 0.00 45.73 4.17
462 463 3.148084 ACCAACGGACCAGGTGAG 58.852 61.111 0.00 0.00 33.57 3.51
463 464 2.347490 CCAACGGACCAGGTGAGG 59.653 66.667 0.00 0.00 0.00 3.86
464 465 2.516888 CCAACGGACCAGGTGAGGT 61.517 63.158 0.00 0.00 46.82 3.85
472 473 1.867363 ACCAGGTGAGGTCTCCATAC 58.133 55.000 0.00 0.00 37.28 2.39
473 474 1.078823 ACCAGGTGAGGTCTCCATACA 59.921 52.381 0.00 0.00 37.28 2.29
475 476 2.624293 CCAGGTGAGGTCTCCATACAGA 60.624 54.545 1.13 0.00 32.20 3.41
483 484 1.405821 GTCTCCATACAGACCCAGACG 59.594 57.143 0.00 0.00 37.43 4.18
598 636 0.766131 ACCGTGGGTGGTACAATTCA 59.234 50.000 0.00 0.00 44.16 2.57
732 781 1.803519 CCTCGTGAGCTTCGCTGAC 60.804 63.158 7.26 0.00 39.88 3.51
768 820 0.459899 CCACCGTGATCGATCTTCCA 59.540 55.000 25.02 3.62 39.71 3.53
1409 1467 1.067915 GCTCAGCATAGTCGAGGGATC 60.068 57.143 0.00 0.00 0.00 3.36
1860 2078 4.884668 TCGATTTCCTACACCTGAAAGT 57.115 40.909 0.00 0.00 34.26 2.66
1881 2099 5.038490 GTTGTCTGCAAGCAGTGGAACTT 62.038 47.826 20.34 0.00 39.61 2.66
1915 2133 3.189080 CGATCCAGAATGCAAAAGTGTCA 59.811 43.478 0.00 0.00 31.97 3.58
2033 2251 7.443477 GTTAAATATCCCTACTTCAGGTCTCC 58.557 42.308 0.00 0.00 43.80 3.71
2108 2326 4.451150 GAGGCGGCGACCACATGA 62.451 66.667 10.28 0.00 0.00 3.07
2124 2342 5.664908 ACCACATGATCTTCCTAGTGAATCT 59.335 40.000 0.00 0.00 31.06 2.40
2468 2687 1.674817 GGAACATCCTCGAAAAGCCGA 60.675 52.381 0.00 0.00 37.03 5.54
2513 2732 5.912149 TGAGGTGCATTCTAGGGAATATT 57.088 39.130 0.00 0.00 39.87 1.28
2750 2970 5.198207 TCCCGAACTATAGTGAGATCAACA 58.802 41.667 6.06 0.00 0.00 3.33
2833 3053 1.675310 CAAGGAGCCCATGAACGCA 60.675 57.895 0.00 0.00 0.00 5.24
2875 3096 6.724905 ACTTGGACCTATACTTACAGTGACTT 59.275 38.462 0.00 0.00 0.00 3.01
2904 3125 9.382244 CAGTAGTGCATGTTACTTTTAGTTTTC 57.618 33.333 9.51 0.00 0.00 2.29
3327 3587 2.199236 GTTTCATAGTAAGGACCGGCG 58.801 52.381 0.00 0.00 0.00 6.46
3582 3851 5.826586 ACACATCAGAGTCGTCATCTAATC 58.173 41.667 0.00 0.00 0.00 1.75
3583 3852 5.592282 ACACATCAGAGTCGTCATCTAATCT 59.408 40.000 0.00 0.00 0.00 2.40
3584 3853 6.142139 CACATCAGAGTCGTCATCTAATCTC 58.858 44.000 0.00 0.00 0.00 2.75
3585 3854 5.825151 ACATCAGAGTCGTCATCTAATCTCA 59.175 40.000 0.00 0.00 0.00 3.27
3586 3855 6.489700 ACATCAGAGTCGTCATCTAATCTCAT 59.510 38.462 0.00 0.00 0.00 2.90
3587 3856 6.311055 TCAGAGTCGTCATCTAATCTCATG 57.689 41.667 0.00 0.00 0.00 3.07
3588 3857 5.240403 TCAGAGTCGTCATCTAATCTCATGG 59.760 44.000 0.00 0.00 0.00 3.66
3589 3858 5.240403 CAGAGTCGTCATCTAATCTCATGGA 59.760 44.000 0.00 0.00 0.00 3.41
3590 3859 5.830457 AGAGTCGTCATCTAATCTCATGGAA 59.170 40.000 0.00 0.00 0.00 3.53
3591 3860 5.837437 AGTCGTCATCTAATCTCATGGAAC 58.163 41.667 0.00 0.00 0.00 3.62
3613 3892 4.529377 ACCTCATGGAACCTCGTAACTTTA 59.471 41.667 0.00 0.00 37.04 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 9.494271 GGAAGATGAGTATATGCTGAATGTTAA 57.506 33.333 0.00 0.00 0.00 2.01
18 19 8.874156 AGGAAGATGAGTATATGCTGAATGTTA 58.126 33.333 0.00 0.00 0.00 2.41
19 20 7.743749 AGGAAGATGAGTATATGCTGAATGTT 58.256 34.615 0.00 0.00 0.00 2.71
20 21 7.235193 AGAGGAAGATGAGTATATGCTGAATGT 59.765 37.037 0.00 0.00 0.00 2.71
21 22 7.546316 CAGAGGAAGATGAGTATATGCTGAATG 59.454 40.741 0.00 0.00 0.00 2.67
22 23 7.613585 CAGAGGAAGATGAGTATATGCTGAAT 58.386 38.462 0.00 0.00 0.00 2.57
23 24 6.518032 GCAGAGGAAGATGAGTATATGCTGAA 60.518 42.308 0.00 0.00 0.00 3.02
24 25 5.047448 GCAGAGGAAGATGAGTATATGCTGA 60.047 44.000 0.00 0.00 0.00 4.26
25 26 5.170021 GCAGAGGAAGATGAGTATATGCTG 58.830 45.833 0.00 0.00 0.00 4.41
26 27 4.837298 TGCAGAGGAAGATGAGTATATGCT 59.163 41.667 0.00 0.00 0.00 3.79
27 28 5.144692 TGCAGAGGAAGATGAGTATATGC 57.855 43.478 0.00 0.00 0.00 3.14
28 29 6.070938 TGGATGCAGAGGAAGATGAGTATATG 60.071 42.308 0.00 0.00 0.00 1.78
29 30 6.021672 TGGATGCAGAGGAAGATGAGTATAT 58.978 40.000 0.00 0.00 0.00 0.86
30 31 5.244851 GTGGATGCAGAGGAAGATGAGTATA 59.755 44.000 0.00 0.00 0.00 1.47
31 32 4.040217 GTGGATGCAGAGGAAGATGAGTAT 59.960 45.833 0.00 0.00 0.00 2.12
32 33 3.386078 GTGGATGCAGAGGAAGATGAGTA 59.614 47.826 0.00 0.00 0.00 2.59
33 34 2.170187 GTGGATGCAGAGGAAGATGAGT 59.830 50.000 0.00 0.00 0.00 3.41
34 35 2.169978 TGTGGATGCAGAGGAAGATGAG 59.830 50.000 0.00 0.00 0.00 2.90
35 36 2.190538 TGTGGATGCAGAGGAAGATGA 58.809 47.619 0.00 0.00 0.00 2.92
36 37 2.704464 TGTGGATGCAGAGGAAGATG 57.296 50.000 0.00 0.00 0.00 2.90
37 38 3.072184 GGTATGTGGATGCAGAGGAAGAT 59.928 47.826 0.00 0.00 0.00 2.40
38 39 2.435805 GGTATGTGGATGCAGAGGAAGA 59.564 50.000 0.00 0.00 0.00 2.87
39 40 2.171237 TGGTATGTGGATGCAGAGGAAG 59.829 50.000 0.00 0.00 0.00 3.46
40 41 2.195727 TGGTATGTGGATGCAGAGGAA 58.804 47.619 0.00 0.00 0.00 3.36
41 42 1.878211 TGGTATGTGGATGCAGAGGA 58.122 50.000 0.00 0.00 0.00 3.71
42 43 2.775890 GATGGTATGTGGATGCAGAGG 58.224 52.381 0.00 0.00 0.00 3.69
43 44 2.036346 TCGATGGTATGTGGATGCAGAG 59.964 50.000 0.00 0.00 0.00 3.35
44 45 2.038659 TCGATGGTATGTGGATGCAGA 58.961 47.619 0.00 0.00 0.00 4.26
45 46 2.138320 GTCGATGGTATGTGGATGCAG 58.862 52.381 0.00 0.00 0.00 4.41
46 47 1.762370 AGTCGATGGTATGTGGATGCA 59.238 47.619 0.00 0.00 0.00 3.96
47 48 2.533266 AGTCGATGGTATGTGGATGC 57.467 50.000 0.00 0.00 0.00 3.91
48 49 4.855715 AGTAGTCGATGGTATGTGGATG 57.144 45.455 0.00 0.00 0.00 3.51
49 50 4.893524 TCAAGTAGTCGATGGTATGTGGAT 59.106 41.667 0.00 0.00 0.00 3.41
50 51 4.274978 TCAAGTAGTCGATGGTATGTGGA 58.725 43.478 0.00 0.00 0.00 4.02
51 52 4.649088 TCAAGTAGTCGATGGTATGTGG 57.351 45.455 0.00 0.00 0.00 4.17
52 53 4.504461 GCTTCAAGTAGTCGATGGTATGTG 59.496 45.833 0.00 0.00 0.00 3.21
53 54 4.402793 AGCTTCAAGTAGTCGATGGTATGT 59.597 41.667 0.00 0.00 0.00 2.29
54 55 4.938080 AGCTTCAAGTAGTCGATGGTATG 58.062 43.478 0.00 0.00 0.00 2.39
55 56 5.593095 TGTAGCTTCAAGTAGTCGATGGTAT 59.407 40.000 0.00 0.00 0.00 2.73
56 57 4.945543 TGTAGCTTCAAGTAGTCGATGGTA 59.054 41.667 0.00 0.00 0.00 3.25
57 58 3.762288 TGTAGCTTCAAGTAGTCGATGGT 59.238 43.478 0.00 0.00 0.00 3.55
58 59 4.371855 TGTAGCTTCAAGTAGTCGATGG 57.628 45.455 0.00 0.00 0.00 3.51
59 60 6.584184 CCATATGTAGCTTCAAGTAGTCGATG 59.416 42.308 1.24 0.00 0.00 3.84
60 61 6.682746 CCATATGTAGCTTCAAGTAGTCGAT 58.317 40.000 1.24 0.00 0.00 3.59
61 62 5.507482 GCCATATGTAGCTTCAAGTAGTCGA 60.507 44.000 1.24 0.00 0.00 4.20
62 63 4.681942 GCCATATGTAGCTTCAAGTAGTCG 59.318 45.833 1.24 0.00 0.00 4.18
63 64 5.848406 AGCCATATGTAGCTTCAAGTAGTC 58.152 41.667 1.24 0.00 35.22 2.59
64 65 5.878406 AGCCATATGTAGCTTCAAGTAGT 57.122 39.130 1.24 0.00 35.22 2.73
73 74 3.577848 CTCTCTGGAAGCCATATGTAGCT 59.422 47.826 1.24 1.13 42.40 3.32
74 75 3.306641 CCTCTCTGGAAGCCATATGTAGC 60.307 52.174 1.24 0.00 38.35 3.58
75 76 4.155709 TCCTCTCTGGAAGCCATATGTAG 58.844 47.826 1.24 0.00 42.94 2.74
76 77 4.140924 TCTCCTCTCTGGAAGCCATATGTA 60.141 45.833 1.24 0.00 45.63 2.29
77 78 2.971330 CTCCTCTCTGGAAGCCATATGT 59.029 50.000 1.24 0.00 45.63 2.29
78 79 3.237746 TCTCCTCTCTGGAAGCCATATG 58.762 50.000 0.00 0.00 45.63 1.78
79 80 3.627041 TCTCCTCTCTGGAAGCCATAT 57.373 47.619 0.00 0.00 45.63 1.78
80 81 3.404869 TTCTCCTCTCTGGAAGCCATA 57.595 47.619 0.00 0.00 45.63 2.74
81 82 2.260639 TTCTCCTCTCTGGAAGCCAT 57.739 50.000 0.00 0.00 45.63 4.40
82 83 2.238144 CAATTCTCCTCTCTGGAAGCCA 59.762 50.000 0.00 0.00 45.63 4.75
83 84 2.238395 ACAATTCTCCTCTCTGGAAGCC 59.762 50.000 0.00 0.00 45.63 4.35
84 85 3.625649 ACAATTCTCCTCTCTGGAAGC 57.374 47.619 0.00 0.00 45.63 3.86
85 86 6.293004 ACTTACAATTCTCCTCTCTGGAAG 57.707 41.667 0.00 0.00 45.63 3.46
86 87 6.295916 GGAACTTACAATTCTCCTCTCTGGAA 60.296 42.308 0.00 0.00 45.63 3.53
87 88 5.187967 GGAACTTACAATTCTCCTCTCTGGA 59.812 44.000 0.00 0.00 43.86 3.86
88 89 5.188751 AGGAACTTACAATTCTCCTCTCTGG 59.811 44.000 0.00 0.00 27.25 3.86
89 90 6.293004 AGGAACTTACAATTCTCCTCTCTG 57.707 41.667 0.00 0.00 27.25 3.35
116 117 0.682209 CCATCCTCTTTGCCACTGGG 60.682 60.000 0.00 0.00 37.18 4.45
117 118 1.318158 GCCATCCTCTTTGCCACTGG 61.318 60.000 0.00 0.00 0.00 4.00
118 119 0.609957 TGCCATCCTCTTTGCCACTG 60.610 55.000 0.00 0.00 0.00 3.66
119 120 0.323178 CTGCCATCCTCTTTGCCACT 60.323 55.000 0.00 0.00 0.00 4.00
120 121 1.941999 GCTGCCATCCTCTTTGCCAC 61.942 60.000 0.00 0.00 0.00 5.01
121 122 1.679977 GCTGCCATCCTCTTTGCCA 60.680 57.895 0.00 0.00 0.00 4.92
122 123 2.768492 CGCTGCCATCCTCTTTGCC 61.768 63.158 0.00 0.00 0.00 4.52
123 124 2.768492 CCGCTGCCATCCTCTTTGC 61.768 63.158 0.00 0.00 0.00 3.68
124 125 2.768492 GCCGCTGCCATCCTCTTTG 61.768 63.158 0.00 0.00 0.00 2.77
125 126 2.439156 GCCGCTGCCATCCTCTTT 60.439 61.111 0.00 0.00 0.00 2.52
126 127 3.272364 TTGCCGCTGCCATCCTCTT 62.272 57.895 0.00 0.00 36.33 2.85
127 128 3.694058 CTTGCCGCTGCCATCCTCT 62.694 63.158 0.00 0.00 36.33 3.69
128 129 3.207669 CTTGCCGCTGCCATCCTC 61.208 66.667 0.00 0.00 36.33 3.71
129 130 3.272364 TTCTTGCCGCTGCCATCCT 62.272 57.895 0.00 0.00 36.33 3.24
130 131 2.751436 TTCTTGCCGCTGCCATCC 60.751 61.111 0.00 0.00 36.33 3.51
131 132 2.796651 CTTCTTGCCGCTGCCATC 59.203 61.111 0.00 0.00 36.33 3.51
132 133 3.446570 GCTTCTTGCCGCTGCCAT 61.447 61.111 0.00 0.00 36.33 4.40
141 142 2.402572 GGCTTCGGAGGCTTCTTGC 61.403 63.158 10.66 0.00 44.59 4.01
142 143 3.896479 GGCTTCGGAGGCTTCTTG 58.104 61.111 10.66 0.00 44.59 3.02
149 150 1.741770 CGTCCAAAGGCTTCGGAGG 60.742 63.158 7.28 10.02 0.00 4.30
150 151 1.741770 CCGTCCAAAGGCTTCGGAG 60.742 63.158 17.43 7.74 43.22 4.63
151 152 2.345991 CCGTCCAAAGGCTTCGGA 59.654 61.111 17.43 11.10 43.22 4.55
159 160 3.118454 ATGTCGCGCCGTCCAAAG 61.118 61.111 0.00 0.00 0.00 2.77
160 161 3.418913 CATGTCGCGCCGTCCAAA 61.419 61.111 0.00 0.00 0.00 3.28
161 162 3.867700 TTCATGTCGCGCCGTCCAA 62.868 57.895 0.00 0.00 0.00 3.53
162 163 3.657448 ATTCATGTCGCGCCGTCCA 62.657 57.895 0.00 0.00 0.00 4.02
163 164 2.871427 GATTCATGTCGCGCCGTCC 61.871 63.158 0.00 0.00 0.00 4.79
164 165 2.621000 GATTCATGTCGCGCCGTC 59.379 61.111 0.00 0.00 0.00 4.79
165 166 2.890474 GGATTCATGTCGCGCCGT 60.890 61.111 0.00 0.00 0.00 5.68
166 167 2.586079 AGGATTCATGTCGCGCCG 60.586 61.111 0.00 0.00 0.00 6.46
167 168 1.089481 TTCAGGATTCATGTCGCGCC 61.089 55.000 0.00 0.00 0.00 6.53
168 169 0.302890 CTTCAGGATTCATGTCGCGC 59.697 55.000 0.00 0.00 0.00 6.86
169 170 0.933097 CCTTCAGGATTCATGTCGCG 59.067 55.000 0.00 0.00 37.39 5.87
170 171 2.029838 ACCTTCAGGATTCATGTCGC 57.970 50.000 0.00 0.00 38.94 5.19
171 172 5.376854 AAAAACCTTCAGGATTCATGTCG 57.623 39.130 0.00 0.00 38.94 4.35
172 173 7.454260 ACTAAAAACCTTCAGGATTCATGTC 57.546 36.000 0.00 0.00 38.94 3.06
173 174 7.942341 TGTACTAAAAACCTTCAGGATTCATGT 59.058 33.333 0.00 0.00 38.94 3.21
174 175 8.335532 TGTACTAAAAACCTTCAGGATTCATG 57.664 34.615 0.00 0.00 38.94 3.07
175 176 8.793592 GTTGTACTAAAAACCTTCAGGATTCAT 58.206 33.333 0.00 0.00 38.94 2.57
176 177 7.041644 CGTTGTACTAAAAACCTTCAGGATTCA 60.042 37.037 0.00 0.00 38.94 2.57
177 178 7.295930 CGTTGTACTAAAAACCTTCAGGATTC 58.704 38.462 0.00 0.00 38.94 2.52
178 179 6.206048 CCGTTGTACTAAAAACCTTCAGGATT 59.794 38.462 0.00 0.00 38.94 3.01
179 180 5.704053 CCGTTGTACTAAAAACCTTCAGGAT 59.296 40.000 0.00 0.00 38.94 3.24
180 181 5.058490 CCGTTGTACTAAAAACCTTCAGGA 58.942 41.667 0.00 0.00 38.94 3.86
181 182 4.319984 GCCGTTGTACTAAAAACCTTCAGG 60.320 45.833 0.00 0.00 42.17 3.86
182 183 4.273969 TGCCGTTGTACTAAAAACCTTCAG 59.726 41.667 0.00 0.00 0.00 3.02
183 184 4.197750 TGCCGTTGTACTAAAAACCTTCA 58.802 39.130 0.00 0.00 0.00 3.02
184 185 4.816786 TGCCGTTGTACTAAAAACCTTC 57.183 40.909 0.00 0.00 0.00 3.46
185 186 5.357596 TCTTTGCCGTTGTACTAAAAACCTT 59.642 36.000 0.00 0.00 0.00 3.50
186 187 4.883006 TCTTTGCCGTTGTACTAAAAACCT 59.117 37.500 0.00 0.00 0.00 3.50
187 188 5.172460 TCTTTGCCGTTGTACTAAAAACC 57.828 39.130 0.00 0.00 0.00 3.27
188 189 5.007921 TCCTCTTTGCCGTTGTACTAAAAAC 59.992 40.000 0.00 0.00 0.00 2.43
189 190 5.124645 TCCTCTTTGCCGTTGTACTAAAAA 58.875 37.500 0.00 0.00 0.00 1.94
190 191 4.706035 TCCTCTTTGCCGTTGTACTAAAA 58.294 39.130 0.00 0.00 0.00 1.52
191 192 4.339872 TCCTCTTTGCCGTTGTACTAAA 57.660 40.909 0.00 0.00 0.00 1.85
192 193 4.202284 ACTTCCTCTTTGCCGTTGTACTAA 60.202 41.667 0.00 0.00 0.00 2.24
193 194 3.322828 ACTTCCTCTTTGCCGTTGTACTA 59.677 43.478 0.00 0.00 0.00 1.82
194 195 2.104281 ACTTCCTCTTTGCCGTTGTACT 59.896 45.455 0.00 0.00 0.00 2.73
195 196 2.479275 GACTTCCTCTTTGCCGTTGTAC 59.521 50.000 0.00 0.00 0.00 2.90
196 197 2.367567 AGACTTCCTCTTTGCCGTTGTA 59.632 45.455 0.00 0.00 0.00 2.41
197 198 1.141053 AGACTTCCTCTTTGCCGTTGT 59.859 47.619 0.00 0.00 0.00 3.32
198 199 1.884235 AGACTTCCTCTTTGCCGTTG 58.116 50.000 0.00 0.00 0.00 4.10
199 200 2.104963 AGAAGACTTCCTCTTTGCCGTT 59.895 45.455 11.67 0.00 39.53 4.44
200 201 1.694696 AGAAGACTTCCTCTTTGCCGT 59.305 47.619 11.67 0.00 39.53 5.68
201 202 2.464157 AGAAGACTTCCTCTTTGCCG 57.536 50.000 11.67 0.00 39.53 5.69
202 203 6.431234 TGAATTAAGAAGACTTCCTCTTTGCC 59.569 38.462 11.67 0.00 39.53 4.52
203 204 7.389053 TCTGAATTAAGAAGACTTCCTCTTTGC 59.611 37.037 11.67 0.00 39.53 3.68
204 205 8.839310 TCTGAATTAAGAAGACTTCCTCTTTG 57.161 34.615 11.67 0.00 39.53 2.77
207 208 8.410141 CGTATCTGAATTAAGAAGACTTCCTCT 58.590 37.037 11.67 0.00 37.53 3.69
208 209 7.650104 CCGTATCTGAATTAAGAAGACTTCCTC 59.350 40.741 11.67 2.50 37.53 3.71
209 210 7.124448 ACCGTATCTGAATTAAGAAGACTTCCT 59.876 37.037 11.67 1.30 37.53 3.36
210 211 7.266400 ACCGTATCTGAATTAAGAAGACTTCC 58.734 38.462 11.67 0.00 37.53 3.46
211 212 8.596380 CAACCGTATCTGAATTAAGAAGACTTC 58.404 37.037 7.14 7.14 37.53 3.01
212 213 7.064728 GCAACCGTATCTGAATTAAGAAGACTT 59.935 37.037 0.00 0.00 39.81 3.01
213 214 6.535508 GCAACCGTATCTGAATTAAGAAGACT 59.464 38.462 0.00 0.00 0.00 3.24
214 215 6.535508 AGCAACCGTATCTGAATTAAGAAGAC 59.464 38.462 0.00 0.00 0.00 3.01
215 216 6.535150 CAGCAACCGTATCTGAATTAAGAAGA 59.465 38.462 0.00 0.00 0.00 2.87
216 217 6.709643 CAGCAACCGTATCTGAATTAAGAAG 58.290 40.000 0.00 0.00 0.00 2.85
217 218 5.064707 GCAGCAACCGTATCTGAATTAAGAA 59.935 40.000 0.00 0.00 0.00 2.52
218 219 4.570772 GCAGCAACCGTATCTGAATTAAGA 59.429 41.667 0.00 0.00 0.00 2.10
219 220 4.572389 AGCAGCAACCGTATCTGAATTAAG 59.428 41.667 0.00 0.00 0.00 1.85
220 221 4.513442 AGCAGCAACCGTATCTGAATTAA 58.487 39.130 0.00 0.00 0.00 1.40
221 222 4.137116 AGCAGCAACCGTATCTGAATTA 57.863 40.909 0.00 0.00 0.00 1.40
222 223 2.991250 AGCAGCAACCGTATCTGAATT 58.009 42.857 0.00 0.00 0.00 2.17
223 224 2.698855 AGCAGCAACCGTATCTGAAT 57.301 45.000 0.00 0.00 0.00 2.57
224 225 2.738643 GCTAGCAGCAACCGTATCTGAA 60.739 50.000 10.63 0.00 41.89 3.02
225 226 1.202417 GCTAGCAGCAACCGTATCTGA 60.202 52.381 10.63 0.00 41.89 3.27
226 227 1.202463 AGCTAGCAGCAACCGTATCTG 60.202 52.381 18.83 0.00 45.56 2.90
227 228 1.067821 GAGCTAGCAGCAACCGTATCT 59.932 52.381 18.83 0.00 45.56 1.98
228 229 1.067821 AGAGCTAGCAGCAACCGTATC 59.932 52.381 18.83 1.06 45.56 2.24
229 230 1.115467 AGAGCTAGCAGCAACCGTAT 58.885 50.000 18.83 0.00 45.56 3.06
230 231 1.404391 GTAGAGCTAGCAGCAACCGTA 59.596 52.381 18.83 0.00 45.56 4.02
231 232 0.173708 GTAGAGCTAGCAGCAACCGT 59.826 55.000 18.83 0.00 45.56 4.83
232 233 0.457851 AGTAGAGCTAGCAGCAACCG 59.542 55.000 18.83 0.00 45.56 4.44
233 234 1.202475 GGAGTAGAGCTAGCAGCAACC 60.202 57.143 18.83 9.10 45.56 3.77
234 235 1.478510 TGGAGTAGAGCTAGCAGCAAC 59.521 52.381 18.83 9.29 45.56 4.17
235 236 1.478510 GTGGAGTAGAGCTAGCAGCAA 59.521 52.381 18.83 0.00 45.56 3.91
236 237 1.107114 GTGGAGTAGAGCTAGCAGCA 58.893 55.000 18.83 0.00 45.56 4.41
237 238 1.398692 AGTGGAGTAGAGCTAGCAGC 58.601 55.000 18.83 8.57 42.84 5.25
238 239 3.181480 GGAAAGTGGAGTAGAGCTAGCAG 60.181 52.174 18.83 0.00 0.00 4.24
239 240 2.761208 GGAAAGTGGAGTAGAGCTAGCA 59.239 50.000 18.83 0.00 0.00 3.49
240 241 2.761208 TGGAAAGTGGAGTAGAGCTAGC 59.239 50.000 6.62 6.62 0.00 3.42
241 242 5.606348 AATGGAAAGTGGAGTAGAGCTAG 57.394 43.478 0.00 0.00 0.00 3.42
242 243 5.955959 TGTAATGGAAAGTGGAGTAGAGCTA 59.044 40.000 0.00 0.00 0.00 3.32
243 244 4.777896 TGTAATGGAAAGTGGAGTAGAGCT 59.222 41.667 0.00 0.00 0.00 4.09
244 245 5.086104 TGTAATGGAAAGTGGAGTAGAGC 57.914 43.478 0.00 0.00 0.00 4.09
245 246 9.667107 TTAAATGTAATGGAAAGTGGAGTAGAG 57.333 33.333 0.00 0.00 0.00 2.43
264 265 8.671028 GGACGGATGTGTACTTAAATTAAATGT 58.329 33.333 0.00 0.00 0.00 2.71
265 266 8.889717 AGGACGGATGTGTACTTAAATTAAATG 58.110 33.333 0.00 0.00 24.11 2.32
266 267 9.457436 AAGGACGGATGTGTACTTAAATTAAAT 57.543 29.630 0.00 0.00 41.25 1.40
267 268 8.723311 CAAGGACGGATGTGTACTTAAATTAAA 58.277 33.333 0.00 0.00 41.11 1.52
268 269 7.334921 CCAAGGACGGATGTGTACTTAAATTAA 59.665 37.037 0.00 0.00 41.11 1.40
269 270 6.819649 CCAAGGACGGATGTGTACTTAAATTA 59.180 38.462 0.00 0.00 41.11 1.40
270 271 5.646360 CCAAGGACGGATGTGTACTTAAATT 59.354 40.000 0.00 0.00 41.11 1.82
271 272 5.046159 TCCAAGGACGGATGTGTACTTAAAT 60.046 40.000 0.00 0.00 41.11 1.40
272 273 4.283978 TCCAAGGACGGATGTGTACTTAAA 59.716 41.667 0.00 0.00 41.11 1.52
273 274 3.833650 TCCAAGGACGGATGTGTACTTAA 59.166 43.478 0.00 0.00 41.11 1.85
274 275 3.433343 TCCAAGGACGGATGTGTACTTA 58.567 45.455 0.00 0.00 41.11 2.24
275 276 2.253610 TCCAAGGACGGATGTGTACTT 58.746 47.619 0.00 0.00 43.88 2.24
276 277 1.933021 TCCAAGGACGGATGTGTACT 58.067 50.000 0.00 0.00 33.27 2.73
277 278 2.618053 CTTCCAAGGACGGATGTGTAC 58.382 52.381 0.00 0.00 34.19 2.90
278 279 1.066430 GCTTCCAAGGACGGATGTGTA 60.066 52.381 0.00 0.00 34.19 2.90
279 280 0.321653 GCTTCCAAGGACGGATGTGT 60.322 55.000 0.00 0.00 34.19 3.72
280 281 0.321564 TGCTTCCAAGGACGGATGTG 60.322 55.000 0.00 0.00 34.19 3.21
281 282 0.036010 CTGCTTCCAAGGACGGATGT 60.036 55.000 0.00 0.00 34.19 3.06
282 283 1.372087 GCTGCTTCCAAGGACGGATG 61.372 60.000 0.00 0.00 34.19 3.51
283 284 1.078143 GCTGCTTCCAAGGACGGAT 60.078 57.895 0.00 0.00 34.19 4.18
284 285 2.347490 GCTGCTTCCAAGGACGGA 59.653 61.111 0.00 0.00 0.00 4.69
285 286 2.747855 GGCTGCTTCCAAGGACGG 60.748 66.667 0.00 0.00 0.00 4.79
286 287 3.121030 CGGCTGCTTCCAAGGACG 61.121 66.667 0.00 0.00 0.00 4.79
287 288 2.180159 TACCGGCTGCTTCCAAGGAC 62.180 60.000 0.00 0.00 0.00 3.85
288 289 1.916273 TACCGGCTGCTTCCAAGGA 60.916 57.895 0.00 0.00 0.00 3.36
289 290 1.745489 GTACCGGCTGCTTCCAAGG 60.745 63.158 0.00 0.00 0.00 3.61
290 291 2.100631 CGTACCGGCTGCTTCCAAG 61.101 63.158 0.00 0.00 0.00 3.61
291 292 2.047655 CGTACCGGCTGCTTCCAA 60.048 61.111 0.00 0.00 0.00 3.53
292 293 4.077184 CCGTACCGGCTGCTTCCA 62.077 66.667 0.00 0.00 41.17 3.53
293 294 4.832608 CCCGTACCGGCTGCTTCC 62.833 72.222 0.00 0.00 46.86 3.46
303 304 0.321564 ACCTAAAAACGGCCCGTACC 60.322 55.000 10.30 0.00 39.99 3.34
304 305 1.522668 AACCTAAAAACGGCCCGTAC 58.477 50.000 10.30 0.00 39.99 3.67
305 306 1.878734 CAAACCTAAAAACGGCCCGTA 59.121 47.619 10.30 0.00 39.99 4.02
306 307 0.669619 CAAACCTAAAAACGGCCCGT 59.330 50.000 1.02 1.02 43.97 5.28
307 308 0.665068 GCAAACCTAAAAACGGCCCG 60.665 55.000 0.00 0.00 0.00 6.13
308 309 0.665068 CGCAAACCTAAAAACGGCCC 60.665 55.000 0.00 0.00 0.00 5.80
309 310 0.031043 ACGCAAACCTAAAAACGGCC 59.969 50.000 0.00 0.00 0.00 6.13
310 311 1.401530 GACGCAAACCTAAAAACGGC 58.598 50.000 0.00 0.00 0.00 5.68
311 312 1.665766 CGACGCAAACCTAAAAACGG 58.334 50.000 0.00 0.00 0.00 4.44
312 313 1.039487 GCGACGCAAACCTAAAAACG 58.961 50.000 16.42 0.00 0.00 3.60
313 314 1.039487 CGCGACGCAAACCTAAAAAC 58.961 50.000 21.35 0.00 0.00 2.43
314 315 3.441246 CGCGACGCAAACCTAAAAA 57.559 47.368 21.35 0.00 0.00 1.94
326 327 3.770765 ATAATCAAATACAGCGCGACG 57.229 42.857 12.10 0.76 0.00 5.12
327 328 5.969741 TGTAATAATCAAATACAGCGCGAC 58.030 37.500 12.10 0.04 0.00 5.19
328 329 5.176774 CCTGTAATAATCAAATACAGCGCGA 59.823 40.000 12.10 0.00 43.21 5.87
329 330 5.374080 CCTGTAATAATCAAATACAGCGCG 58.626 41.667 0.00 0.00 43.21 6.86
339 340 2.944129 GGCTGGGCCTGTAATAATCAA 58.056 47.619 12.33 0.00 46.69 2.57
364 365 4.043750 TCAGAATACGACACGAACGTTTT 58.956 39.130 0.46 9.37 43.62 2.43
377 378 2.463553 TACGTCGGCTTCAGAATACG 57.536 50.000 0.00 0.00 36.48 3.06
392 393 1.665599 CACCGGCTTCCGTTTACGT 60.666 57.895 0.00 0.00 46.80 3.57
393 394 2.385091 CCACCGGCTTCCGTTTACG 61.385 63.158 0.00 0.00 46.80 3.18
395 396 0.325602 ATTCCACCGGCTTCCGTTTA 59.674 50.000 0.00 0.00 46.80 2.01
399 400 1.093496 GGTTATTCCACCGGCTTCCG 61.093 60.000 0.00 0.00 40.55 4.30
400 401 0.034863 TGGTTATTCCACCGGCTTCC 60.035 55.000 0.00 0.00 41.93 3.46
401 402 3.562397 TGGTTATTCCACCGGCTTC 57.438 52.632 0.00 0.00 41.93 3.86
436 437 1.952635 GTCCGTTGGTGTCCGTCAC 60.953 63.158 0.25 0.25 45.47 3.67
440 441 2.357034 CTGGTCCGTTGGTGTCCG 60.357 66.667 0.00 0.00 0.00 4.79
447 448 3.148084 ACCTCACCTGGTCCGTTG 58.852 61.111 0.00 0.00 34.86 4.10
463 464 1.405821 CGTCTGGGTCTGTATGGAGAC 59.594 57.143 0.00 0.00 41.55 3.36
464 465 1.005569 ACGTCTGGGTCTGTATGGAGA 59.994 52.381 0.00 0.00 0.00 3.71
465 466 1.475403 ACGTCTGGGTCTGTATGGAG 58.525 55.000 0.00 0.00 0.00 3.86
466 467 1.933021 AACGTCTGGGTCTGTATGGA 58.067 50.000 0.00 0.00 0.00 3.41
467 468 2.233922 AGAAACGTCTGGGTCTGTATGG 59.766 50.000 0.00 0.00 30.83 2.74
468 469 3.512680 GAGAAACGTCTGGGTCTGTATG 58.487 50.000 0.00 0.00 32.80 2.39
471 472 0.680061 GGAGAAACGTCTGGGTCTGT 59.320 55.000 0.00 0.00 32.80 3.41
472 473 0.037232 GGGAGAAACGTCTGGGTCTG 60.037 60.000 0.00 0.00 32.80 3.51
473 474 1.192803 GGGGAGAAACGTCTGGGTCT 61.193 60.000 0.00 0.00 32.80 3.85
475 476 2.222013 GGGGGAGAAACGTCTGGGT 61.222 63.158 0.00 0.00 32.80 4.51
533 535 4.521256 AGTAGGGTTCTTCGATATCTGCTC 59.479 45.833 0.34 0.00 0.00 4.26
1656 1835 2.915738 ACTCGCGTACTCAACTTAGG 57.084 50.000 5.77 0.00 0.00 2.69
1860 2078 1.024271 GTTCCACTGCTTGCAGACAA 58.976 50.000 26.71 13.59 0.00 3.18
1881 2099 2.677914 TCTGGATCGGGCTCTTAATGA 58.322 47.619 0.00 0.00 0.00 2.57
1915 2133 3.079578 CTGAGTTGTCATGAGCAATGGT 58.920 45.455 11.98 0.00 36.86 3.55
2033 2251 5.327091 CAGTAACTGCGATCCTTGAAATTG 58.673 41.667 0.00 0.00 0.00 2.32
2108 2326 7.487822 TCTTGAACAGATTCACTAGGAAGAT 57.512 36.000 0.00 0.00 44.66 2.40
2333 2551 1.202758 TGCCATGAAGAAGGTCACGTT 60.203 47.619 0.00 0.00 0.00 3.99
2490 2709 5.912149 ATATTCCCTAGAATGCACCTCAA 57.088 39.130 0.00 0.00 42.78 3.02
2513 2732 9.090103 CTTCCACTCCACCAGATAGTTATAATA 57.910 37.037 0.00 0.00 0.00 0.98
2750 2970 4.320456 CTGCGTCCTGCCACCACT 62.320 66.667 0.00 0.00 45.60 4.00
2833 3053 3.624777 CAAGTCTGGCTGGAACCATATT 58.375 45.455 0.00 0.00 39.54 1.28
2858 3078 9.393512 ACTACTGGTAAGTCACTGTAAGTATAG 57.606 37.037 0.00 0.00 41.29 1.31
2875 3096 7.673180 ACTAAAAGTAACATGCACTACTGGTA 58.327 34.615 5.88 0.00 0.00 3.25
3117 3341 7.432869 CATGTTAGTCCACAATTCTTTTGGAA 58.567 34.615 0.00 0.00 41.15 3.53
3321 3580 2.909965 ACCACATTTTGCGCCGGT 60.910 55.556 4.18 0.00 0.00 5.28
3327 3587 4.448732 GTGAATTTCCTGACCACATTTTGC 59.551 41.667 0.00 0.00 0.00 3.68
3582 3851 2.240667 AGGTTCCATGAGGTTCCATGAG 59.759 50.000 5.54 0.00 44.98 2.90
3583 3852 2.239654 GAGGTTCCATGAGGTTCCATGA 59.760 50.000 5.54 0.00 44.98 3.07
3584 3853 2.648059 GAGGTTCCATGAGGTTCCATG 58.352 52.381 0.00 0.00 42.58 3.66
3585 3854 1.210478 CGAGGTTCCATGAGGTTCCAT 59.790 52.381 0.00 0.00 35.89 3.41
3586 3855 0.613260 CGAGGTTCCATGAGGTTCCA 59.387 55.000 0.00 0.00 35.89 3.53
3587 3856 0.613777 ACGAGGTTCCATGAGGTTCC 59.386 55.000 0.00 0.00 35.89 3.62
3588 3857 3.056035 AGTTACGAGGTTCCATGAGGTTC 60.056 47.826 0.00 0.00 35.89 3.62
3589 3858 2.904434 AGTTACGAGGTTCCATGAGGTT 59.096 45.455 0.00 0.00 35.89 3.50
3590 3859 2.537143 AGTTACGAGGTTCCATGAGGT 58.463 47.619 0.00 0.00 35.89 3.85
3591 3860 3.611766 AAGTTACGAGGTTCCATGAGG 57.388 47.619 0.00 0.00 0.00 3.86
3722 4001 6.078456 TCATCATAATTTGGGAGGAGTGTT 57.922 37.500 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.