Multiple sequence alignment - TraesCS2B01G109900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G109900 chr2B 100.000 8136 0 0 1 8136 71297854 71305989 0.000000e+00 15025.0
1 TraesCS2B01G109900 chr2B 94.422 735 39 2 7403 8136 787229176 787228443 0.000000e+00 1129.0
2 TraesCS2B01G109900 chr2B 88.077 671 62 10 936 1590 69398131 69398799 0.000000e+00 780.0
3 TraesCS2B01G109900 chr2B 87.798 672 64 10 936 1590 56095316 56095986 0.000000e+00 771.0
4 TraesCS2B01G109900 chr2B 87.649 672 65 10 936 1590 752989855 752989185 0.000000e+00 765.0
5 TraesCS2B01G109900 chr2B 87.946 589 61 6 1011 1590 749325068 749324481 0.000000e+00 686.0
6 TraesCS2B01G109900 chr2B 87.947 531 46 9 6671 7190 71317350 71317873 1.940000e-170 610.0
7 TraesCS2B01G109900 chr2B 92.015 263 21 0 140 402 147482350 147482088 3.590000e-98 370.0
8 TraesCS2B01G109900 chr2B 88.442 199 23 0 5515 5713 71303269 71303467 2.930000e-59 241.0
9 TraesCS2B01G109900 chr2B 88.442 199 23 0 5416 5614 71303368 71303566 2.930000e-59 241.0
10 TraesCS2B01G109900 chr2B 86.667 120 12 3 1 116 68329851 68329970 6.630000e-26 130.0
11 TraesCS2B01G109900 chr2D 93.791 6764 341 45 479 7201 44481782 44488507 0.000000e+00 10091.0
12 TraesCS2B01G109900 chr2D 88.425 527 44 6 6671 7186 44517856 44518376 3.230000e-173 619.0
13 TraesCS2B01G109900 chr2D 88.235 527 45 6 6671 7186 44526939 44527459 1.500000e-171 614.0
14 TraesCS2B01G109900 chr2D 91.960 199 16 0 5515 5713 44486723 44486921 6.220000e-71 279.0
15 TraesCS2B01G109900 chr2D 89.447 199 21 0 5416 5614 44486822 44487020 1.360000e-62 252.0
16 TraesCS2B01G109900 chr2D 77.446 368 72 6 5689 6048 439689943 439689579 8.270000e-50 209.0
17 TraesCS2B01G109900 chr2D 93.478 138 8 1 1 137 44481573 44481710 3.850000e-48 204.0
18 TraesCS2B01G109900 chr2D 82.222 225 40 0 6199 6423 439689474 439689250 2.320000e-45 195.0
19 TraesCS2B01G109900 chr2A 94.760 4924 233 15 2292 7207 48395131 48400037 0.000000e+00 7640.0
20 TraesCS2B01G109900 chr2A 89.272 1566 104 28 789 2309 48393543 48395089 0.000000e+00 1903.0
21 TraesCS2B01G109900 chr2A 87.454 271 22 3 6671 6938 48407216 48407477 1.330000e-77 302.0
22 TraesCS2B01G109900 chr2A 90.452 199 19 0 5515 5713 48398250 48398448 6.260000e-66 263.0
23 TraesCS2B01G109900 chr2A 86.432 199 27 0 5416 5614 48398349 48398547 1.370000e-52 219.0
24 TraesCS2B01G109900 chr2A 93.000 100 7 0 5416 5515 48398448 48398547 6.580000e-31 147.0
25 TraesCS2B01G109900 chr2A 77.027 148 23 10 479 620 36060707 36060565 3.150000e-09 75.0
26 TraesCS2B01G109900 chr2A 94.737 38 2 0 408 445 48393172 48393209 8.820000e-05 60.2
27 TraesCS2B01G109900 chr4B 97.863 936 17 3 7202 8136 70107772 70108705 0.000000e+00 1615.0
28 TraesCS2B01G109900 chr4B 94.959 734 33 3 7403 8135 398518967 398518237 0.000000e+00 1147.0
29 TraesCS2B01G109900 chr4B 91.571 261 22 0 142 402 652280964 652280704 2.160000e-95 361.0
30 TraesCS2B01G109900 chr4B 91.571 261 21 1 141 401 417767084 417766825 7.760000e-95 359.0
31 TraesCS2B01G109900 chr4B 97.382 191 4 1 7212 7402 1757044 1756855 2.830000e-84 324.0
32 TraesCS2B01G109900 chr4B 87.571 177 20 1 473 647 498863246 498863422 3.850000e-48 204.0
33 TraesCS2B01G109900 chr1B 97.540 935 19 4 7202 8136 514087915 514086985 0.000000e+00 1596.0
34 TraesCS2B01G109900 chr1B 96.517 201 5 2 7203 7402 307212670 307212471 1.690000e-86 331.0
35 TraesCS2B01G109900 chr1B 89.286 112 11 1 6 116 630246284 630246395 1.100000e-28 139.0
36 TraesCS2B01G109900 chr3B 97.532 932 18 5 7207 8136 687471170 687472098 0.000000e+00 1589.0
37 TraesCS2B01G109900 chr3B 85.842 671 65 8 936 1590 484503457 484502801 0.000000e+00 686.0
38 TraesCS2B01G109900 chr3B 84.615 130 14 5 1 125 166126157 166126029 3.080000e-24 124.0
39 TraesCS2B01G109900 chr6D 95.095 734 35 1 7403 8136 402562048 402561316 0.000000e+00 1155.0
40 TraesCS2B01G109900 chr6D 94.694 735 35 4 7403 8136 160453184 160452453 0.000000e+00 1138.0
41 TraesCS2B01G109900 chr7D 94.830 735 35 3 7403 8136 555165723 555164991 0.000000e+00 1144.0
42 TraesCS2B01G109900 chr7A 94.550 734 39 1 7403 8136 34187288 34186556 0.000000e+00 1133.0
43 TraesCS2B01G109900 chr7A 91.000 200 13 1 936 1135 31254022 31254216 1.740000e-66 265.0
44 TraesCS2B01G109900 chr7A 89.000 200 16 2 936 1135 31187170 31187363 8.160000e-60 243.0
45 TraesCS2B01G109900 chr7B 98.056 360 6 1 7212 7571 694930090 694930448 6.930000e-175 625.0
46 TraesCS2B01G109900 chr7B 92.308 260 20 0 142 401 397446681 397446422 3.590000e-98 370.0
47 TraesCS2B01G109900 chr7B 91.321 265 22 1 139 402 702325767 702325503 2.160000e-95 361.0
48 TraesCS2B01G109900 chr7B 90.253 277 24 3 127 401 106108083 106108358 7.760000e-95 359.0
49 TraesCS2B01G109900 chr7B 97.396 192 4 1 7211 7402 228153146 228152956 7.870000e-85 326.0
50 TraesCS2B01G109900 chr7B 83.688 141 18 4 1 137 378382603 378382742 2.380000e-25 128.0
51 TraesCS2B01G109900 chrUn 88.302 530 45 6 6671 7189 339327877 339327354 3.230000e-173 619.0
52 TraesCS2B01G109900 chrUn 88.425 527 44 6 6671 7186 374251333 374251853 3.230000e-173 619.0
53 TraesCS2B01G109900 chr4A 89.126 469 40 5 1108 1566 712892539 712892072 2.550000e-159 573.0
54 TraesCS2B01G109900 chr4A 91.635 263 22 0 142 404 438615519 438615257 1.670000e-96 364.0
55 TraesCS2B01G109900 chr4A 90.476 105 9 1 1 104 659223885 659223989 3.960000e-28 137.0
56 TraesCS2B01G109900 chr4A 86.667 120 12 4 1 118 659827354 659827471 6.630000e-26 130.0
57 TraesCS2B01G109900 chr5A 91.954 261 21 0 142 402 529182838 529182578 4.640000e-97 366.0
58 TraesCS2B01G109900 chr5A 92.000 50 3 1 472 521 426278853 426278901 1.470000e-07 69.4
59 TraesCS2B01G109900 chr6B 90.637 267 25 0 136 402 329713881 329714147 1.000000e-93 355.0
60 TraesCS2B01G109900 chr6B 95.980 199 6 2 7204 7402 562534144 562534340 1.020000e-83 322.0
61 TraesCS2B01G109900 chr6B 83.969 131 18 3 8 136 80688654 80688783 1.110000e-23 122.0
62 TraesCS2B01G109900 chr6B 97.500 40 1 0 479 518 662519871 662519832 1.470000e-07 69.4
63 TraesCS2B01G109900 chr6A 97.938 194 3 1 7211 7404 212290651 212290459 1.310000e-87 335.0
64 TraesCS2B01G109900 chr6A 82.178 202 16 8 479 673 582266073 582266261 1.090000e-33 156.0
65 TraesCS2B01G109900 chr5D 86.111 144 18 2 1 142 264633508 264633651 3.930000e-33 154.0
66 TraesCS2B01G109900 chr5D 87.037 54 7 0 474 527 388387407 388387460 2.450000e-05 62.1
67 TraesCS2B01G109900 chr5D 87.037 54 7 0 474 527 388389244 388389297 2.450000e-05 62.1
68 TraesCS2B01G109900 chr5D 87.037 54 7 0 474 527 388391081 388391134 2.450000e-05 62.1
69 TraesCS2B01G109900 chr5D 82.432 74 8 4 474 546 353952104 353952173 8.820000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G109900 chr2B 71297854 71305989 8135 False 5169.000000 15025 92.294667 1 8136 3 chr2B.!!$F5 8135
1 TraesCS2B01G109900 chr2B 787228443 787229176 733 True 1129.000000 1129 94.422000 7403 8136 1 chr2B.!!$R4 733
2 TraesCS2B01G109900 chr2B 69398131 69398799 668 False 780.000000 780 88.077000 936 1590 1 chr2B.!!$F3 654
3 TraesCS2B01G109900 chr2B 56095316 56095986 670 False 771.000000 771 87.798000 936 1590 1 chr2B.!!$F1 654
4 TraesCS2B01G109900 chr2B 752989185 752989855 670 True 765.000000 765 87.649000 936 1590 1 chr2B.!!$R3 654
5 TraesCS2B01G109900 chr2B 749324481 749325068 587 True 686.000000 686 87.946000 1011 1590 1 chr2B.!!$R2 579
6 TraesCS2B01G109900 chr2B 71317350 71317873 523 False 610.000000 610 87.947000 6671 7190 1 chr2B.!!$F4 519
7 TraesCS2B01G109900 chr2D 44481573 44488507 6934 False 2706.500000 10091 92.169000 1 7201 4 chr2D.!!$F3 7200
8 TraesCS2B01G109900 chr2D 44517856 44518376 520 False 619.000000 619 88.425000 6671 7186 1 chr2D.!!$F1 515
9 TraesCS2B01G109900 chr2D 44526939 44527459 520 False 614.000000 614 88.235000 6671 7186 1 chr2D.!!$F2 515
10 TraesCS2B01G109900 chr2D 439689250 439689943 693 True 202.000000 209 79.834000 5689 6423 2 chr2D.!!$R1 734
11 TraesCS2B01G109900 chr2A 48393172 48400037 6865 False 1705.366667 7640 91.442167 408 7207 6 chr2A.!!$F2 6799
12 TraesCS2B01G109900 chr4B 70107772 70108705 933 False 1615.000000 1615 97.863000 7202 8136 1 chr4B.!!$F1 934
13 TraesCS2B01G109900 chr4B 398518237 398518967 730 True 1147.000000 1147 94.959000 7403 8135 1 chr4B.!!$R2 732
14 TraesCS2B01G109900 chr1B 514086985 514087915 930 True 1596.000000 1596 97.540000 7202 8136 1 chr1B.!!$R2 934
15 TraesCS2B01G109900 chr3B 687471170 687472098 928 False 1589.000000 1589 97.532000 7207 8136 1 chr3B.!!$F1 929
16 TraesCS2B01G109900 chr3B 484502801 484503457 656 True 686.000000 686 85.842000 936 1590 1 chr3B.!!$R2 654
17 TraesCS2B01G109900 chr6D 402561316 402562048 732 True 1155.000000 1155 95.095000 7403 8136 1 chr6D.!!$R2 733
18 TraesCS2B01G109900 chr6D 160452453 160453184 731 True 1138.000000 1138 94.694000 7403 8136 1 chr6D.!!$R1 733
19 TraesCS2B01G109900 chr7D 555164991 555165723 732 True 1144.000000 1144 94.830000 7403 8136 1 chr7D.!!$R1 733
20 TraesCS2B01G109900 chr7A 34186556 34187288 732 True 1133.000000 1133 94.550000 7403 8136 1 chr7A.!!$R1 733
21 TraesCS2B01G109900 chrUn 339327354 339327877 523 True 619.000000 619 88.302000 6671 7189 1 chrUn.!!$R1 518
22 TraesCS2B01G109900 chrUn 374251333 374251853 520 False 619.000000 619 88.425000 6671 7186 1 chrUn.!!$F1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 184 0.030235 AAGGCGCGGTTTGACTTTTC 59.970 50.000 8.83 0.00 0.00 2.29 F
203 205 0.102300 GGCCTTCGTTGCACAACTTT 59.898 50.000 11.44 0.00 39.08 2.66 F
566 583 0.179070 TGAACAAGCTACACGTGGCA 60.179 50.000 21.57 6.21 39.73 4.92 F
567 584 0.234884 GAACAAGCTACACGTGGCAC 59.765 55.000 21.57 7.79 39.73 5.01 F
586 603 0.251916 CCCCTGACCTAACGAATGCA 59.748 55.000 0.00 0.00 0.00 3.96 F
1171 1464 0.611618 ATTCCGTGCTTGATTGGCCA 60.612 50.000 0.00 0.00 0.00 5.36 F
1189 1482 0.811915 CAGATTCGGTCCGTCTCACT 59.188 55.000 11.88 2.63 0.00 3.41 F
1527 1835 1.218316 CCGGGTCAGTTCTGCTACC 59.782 63.158 0.00 3.11 0.00 3.18 F
3170 3545 0.178903 TACTGTCTCCCCTGGCAGTT 60.179 55.000 14.43 0.00 41.67 3.16 F
4390 4765 1.004440 GGCAGAGAAGGAACGTGCT 60.004 57.895 0.00 0.00 34.46 4.40 F
5011 5386 0.112995 TTTCCCAGCCTGCTGACATT 59.887 50.000 20.29 0.00 46.30 2.71 F
6346 6773 0.455815 GAAATGGCGGCAACTAAGGG 59.544 55.000 18.31 0.00 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1346 1652 0.035439 TCAAGCGAGAAATGTCCCCC 60.035 55.000 0.00 0.00 0.00 5.40 R
1439 1747 0.826672 AGTCACGACCTTCTTCCCGT 60.827 55.000 0.00 0.00 35.46 5.28 R
1480 1788 1.031571 GCAATCACTCCGGCATCCAA 61.032 55.000 0.00 0.00 0.00 3.53 R
1754 2064 1.600957 CATGATGTCTTCACGCCCATC 59.399 52.381 0.00 0.00 37.11 3.51 R
2122 2433 3.916035 ACTGCTACAGGTGGATCTATGA 58.084 45.455 0.00 0.00 35.51 2.15 R
2824 3199 0.106469 TAGCAAGGTGGTTTGGTGCA 60.106 50.000 0.00 0.00 39.01 4.57 R
3149 3524 0.539051 CTGCCAGGGGAGACAGTAAG 59.461 60.000 0.00 0.00 35.50 2.34 R
3412 3787 0.109272 TGTTGAGAGTAGAAGCGGCG 60.109 55.000 0.51 0.51 0.00 6.46 R
4588 4963 0.036010 GAAGCCTCTTAGCACCAGCA 60.036 55.000 0.00 0.00 45.49 4.41 R
5920 6301 1.041437 ATACTCTACCCTTCAGGCGC 58.959 55.000 0.00 0.00 40.58 6.53 R
6658 7086 0.544357 TCACGAACTCCTGGACCCAT 60.544 55.000 0.00 0.00 0.00 4.00 R
7290 7732 1.048601 GTTCTGGATCTATGGCGGGA 58.951 55.000 0.00 0.00 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 7.693969 AGTAAAGTGGAATTGATTCAGAAGG 57.306 36.000 6.11 0.00 38.53 3.46
98 100 0.037590 CATCCGGGAAAGGTTGGACA 59.962 55.000 0.00 0.00 32.33 4.02
107 109 0.759060 AAGGTTGGACAAAGGGTGGC 60.759 55.000 0.00 0.00 0.00 5.01
151 153 8.865244 TTAAACCTTACATTATACTCCCTCCT 57.135 34.615 0.00 0.00 0.00 3.69
152 154 7.766736 AAACCTTACATTATACTCCCTCCTT 57.233 36.000 0.00 0.00 0.00 3.36
153 155 6.997942 ACCTTACATTATACTCCCTCCTTC 57.002 41.667 0.00 0.00 0.00 3.46
154 156 5.845065 ACCTTACATTATACTCCCTCCTTCC 59.155 44.000 0.00 0.00 0.00 3.46
155 157 5.248705 CCTTACATTATACTCCCTCCTTCCC 59.751 48.000 0.00 0.00 0.00 3.97
156 158 4.295905 ACATTATACTCCCTCCTTCCCA 57.704 45.455 0.00 0.00 0.00 4.37
157 159 4.641868 ACATTATACTCCCTCCTTCCCAA 58.358 43.478 0.00 0.00 0.00 4.12
158 160 5.043762 ACATTATACTCCCTCCTTCCCAAA 58.956 41.667 0.00 0.00 0.00 3.28
159 161 5.494706 ACATTATACTCCCTCCTTCCCAAAA 59.505 40.000 0.00 0.00 0.00 2.44
160 162 6.162241 ACATTATACTCCCTCCTTCCCAAAAT 59.838 38.462 0.00 0.00 0.00 1.82
161 163 7.352522 ACATTATACTCCCTCCTTCCCAAAATA 59.647 37.037 0.00 0.00 0.00 1.40
162 164 7.964730 TTATACTCCCTCCTTCCCAAAATAT 57.035 36.000 0.00 0.00 0.00 1.28
163 165 9.643778 ATTATACTCCCTCCTTCCCAAAATATA 57.356 33.333 0.00 0.00 0.00 0.86
164 166 7.964730 ATACTCCCTCCTTCCCAAAATATAA 57.035 36.000 0.00 0.00 0.00 0.98
165 167 6.267492 ACTCCCTCCTTCCCAAAATATAAG 57.733 41.667 0.00 0.00 0.00 1.73
166 168 5.134509 ACTCCCTCCTTCCCAAAATATAAGG 59.865 44.000 0.00 0.00 39.93 2.69
167 169 4.141018 TCCCTCCTTCCCAAAATATAAGGC 60.141 45.833 0.00 0.00 38.70 4.35
168 170 3.821033 CCTCCTTCCCAAAATATAAGGCG 59.179 47.826 0.00 0.00 38.70 5.52
169 171 3.219281 TCCTTCCCAAAATATAAGGCGC 58.781 45.455 0.00 0.00 38.70 6.53
170 172 2.031157 CCTTCCCAAAATATAAGGCGCG 60.031 50.000 0.00 0.00 32.66 6.86
171 173 1.600023 TCCCAAAATATAAGGCGCGG 58.400 50.000 8.83 0.00 0.00 6.46
172 174 1.134037 TCCCAAAATATAAGGCGCGGT 60.134 47.619 8.83 0.00 0.00 5.68
173 175 1.679153 CCCAAAATATAAGGCGCGGTT 59.321 47.619 8.83 0.00 0.00 4.44
174 176 2.100087 CCCAAAATATAAGGCGCGGTTT 59.900 45.455 8.83 0.00 0.00 3.27
175 177 3.112580 CCAAAATATAAGGCGCGGTTTG 58.887 45.455 8.83 3.93 0.00 2.93
176 178 3.181495 CCAAAATATAAGGCGCGGTTTGA 60.181 43.478 8.83 0.00 0.00 2.69
177 179 3.685836 AAATATAAGGCGCGGTTTGAC 57.314 42.857 8.83 0.00 0.00 3.18
178 180 2.614829 ATATAAGGCGCGGTTTGACT 57.385 45.000 8.83 0.00 0.00 3.41
179 181 2.389962 TATAAGGCGCGGTTTGACTT 57.610 45.000 8.83 0.00 0.00 3.01
180 182 1.530323 ATAAGGCGCGGTTTGACTTT 58.470 45.000 8.83 0.00 0.00 2.66
181 183 1.310904 TAAGGCGCGGTTTGACTTTT 58.689 45.000 8.83 0.00 0.00 2.27
182 184 0.030235 AAGGCGCGGTTTGACTTTTC 59.970 50.000 8.83 0.00 0.00 2.29
183 185 0.818040 AGGCGCGGTTTGACTTTTCT 60.818 50.000 8.83 0.00 0.00 2.52
184 186 0.660300 GGCGCGGTTTGACTTTTCTG 60.660 55.000 8.83 0.00 0.00 3.02
185 187 0.660300 GCGCGGTTTGACTTTTCTGG 60.660 55.000 8.83 0.00 0.00 3.86
186 188 0.660300 CGCGGTTTGACTTTTCTGGC 60.660 55.000 0.00 0.00 0.00 4.85
187 189 0.318699 GCGGTTTGACTTTTCTGGCC 60.319 55.000 0.00 0.00 0.00 5.36
188 190 1.318576 CGGTTTGACTTTTCTGGCCT 58.681 50.000 3.32 0.00 0.00 5.19
189 191 1.681264 CGGTTTGACTTTTCTGGCCTT 59.319 47.619 3.32 0.00 0.00 4.35
190 192 2.287608 CGGTTTGACTTTTCTGGCCTTC 60.288 50.000 3.32 0.00 0.00 3.46
191 193 2.287608 GGTTTGACTTTTCTGGCCTTCG 60.288 50.000 3.32 0.00 0.00 3.79
192 194 2.341846 TTGACTTTTCTGGCCTTCGT 57.658 45.000 3.32 0.00 0.00 3.85
193 195 2.341846 TGACTTTTCTGGCCTTCGTT 57.658 45.000 3.32 0.00 0.00 3.85
194 196 1.946768 TGACTTTTCTGGCCTTCGTTG 59.053 47.619 3.32 0.00 0.00 4.10
195 197 0.668535 ACTTTTCTGGCCTTCGTTGC 59.331 50.000 3.32 0.00 0.00 4.17
196 198 0.667993 CTTTTCTGGCCTTCGTTGCA 59.332 50.000 3.32 0.00 0.00 4.08
197 199 0.383949 TTTTCTGGCCTTCGTTGCAC 59.616 50.000 3.32 0.00 0.00 4.57
198 200 0.749818 TTTCTGGCCTTCGTTGCACA 60.750 50.000 3.32 0.00 0.00 4.57
199 201 0.749818 TTCTGGCCTTCGTTGCACAA 60.750 50.000 3.32 0.00 0.00 3.33
200 202 1.008538 CTGGCCTTCGTTGCACAAC 60.009 57.895 3.32 3.37 37.92 3.32
201 203 1.447317 CTGGCCTTCGTTGCACAACT 61.447 55.000 3.32 0.00 39.08 3.16
202 204 1.034838 TGGCCTTCGTTGCACAACTT 61.035 50.000 3.32 0.00 39.08 2.66
203 205 0.102300 GGCCTTCGTTGCACAACTTT 59.898 50.000 11.44 0.00 39.08 2.66
204 206 1.199624 GCCTTCGTTGCACAACTTTG 58.800 50.000 11.44 1.81 39.08 2.77
205 207 1.202245 GCCTTCGTTGCACAACTTTGA 60.202 47.619 11.44 0.00 39.08 2.69
206 208 2.450160 CCTTCGTTGCACAACTTTGAC 58.550 47.619 11.44 0.00 39.08 3.18
207 209 2.097466 CCTTCGTTGCACAACTTTGACT 59.903 45.455 11.44 0.00 39.08 3.41
208 210 3.311322 CCTTCGTTGCACAACTTTGACTA 59.689 43.478 11.44 0.00 39.08 2.59
209 211 4.024048 CCTTCGTTGCACAACTTTGACTAT 60.024 41.667 11.44 0.00 39.08 2.12
210 212 5.178623 CCTTCGTTGCACAACTTTGACTATA 59.821 40.000 11.44 0.00 39.08 1.31
211 213 6.293190 CCTTCGTTGCACAACTTTGACTATAA 60.293 38.462 11.44 0.00 39.08 0.98
212 214 6.795098 TCGTTGCACAACTTTGACTATAAT 57.205 33.333 11.44 0.00 39.08 1.28
213 215 7.197071 TCGTTGCACAACTTTGACTATAATT 57.803 32.000 11.44 0.00 39.08 1.40
214 216 7.644490 TCGTTGCACAACTTTGACTATAATTT 58.356 30.769 11.44 0.00 39.08 1.82
215 217 8.132362 TCGTTGCACAACTTTGACTATAATTTT 58.868 29.630 11.44 0.00 39.08 1.82
216 218 8.417176 CGTTGCACAACTTTGACTATAATTTTC 58.583 33.333 11.44 0.00 39.08 2.29
217 219 9.243637 GTTGCACAACTTTGACTATAATTTTCA 57.756 29.630 6.27 0.00 38.25 2.69
218 220 9.979578 TTGCACAACTTTGACTATAATTTTCAT 57.020 25.926 0.00 0.00 0.00 2.57
219 221 9.409312 TGCACAACTTTGACTATAATTTTCATG 57.591 29.630 0.00 0.00 0.00 3.07
220 222 8.375465 GCACAACTTTGACTATAATTTTCATGC 58.625 33.333 0.00 0.00 0.00 4.06
221 223 9.409312 CACAACTTTGACTATAATTTTCATGCA 57.591 29.630 0.00 0.00 0.00 3.96
228 230 9.715123 TTGACTATAATTTTCATGCATTGTACG 57.285 29.630 0.00 0.00 0.00 3.67
229 231 7.855409 TGACTATAATTTTCATGCATTGTACGC 59.145 33.333 0.00 0.00 0.00 4.42
230 232 7.138736 ACTATAATTTTCATGCATTGTACGCC 58.861 34.615 0.00 0.00 0.00 5.68
231 233 4.454728 AATTTTCATGCATTGTACGCCT 57.545 36.364 0.00 0.00 0.00 5.52
232 234 3.932545 TTTTCATGCATTGTACGCCTT 57.067 38.095 0.00 0.00 0.00 4.35
233 235 3.932545 TTTCATGCATTGTACGCCTTT 57.067 38.095 0.00 0.00 0.00 3.11
234 236 5.378292 TTTTCATGCATTGTACGCCTTTA 57.622 34.783 0.00 0.00 0.00 1.85
235 237 5.378292 TTTCATGCATTGTACGCCTTTAA 57.622 34.783 0.00 0.00 0.00 1.52
236 238 5.378292 TTCATGCATTGTACGCCTTTAAA 57.622 34.783 0.00 0.00 0.00 1.52
237 239 5.378292 TCATGCATTGTACGCCTTTAAAA 57.622 34.783 0.00 0.00 0.00 1.52
238 240 5.773575 TCATGCATTGTACGCCTTTAAAAA 58.226 33.333 0.00 0.00 0.00 1.94
239 241 6.393990 TCATGCATTGTACGCCTTTAAAAAT 58.606 32.000 0.00 0.00 0.00 1.82
240 242 6.870965 TCATGCATTGTACGCCTTTAAAAATT 59.129 30.769 0.00 0.00 0.00 1.82
241 243 6.459257 TGCATTGTACGCCTTTAAAAATTG 57.541 33.333 0.00 0.00 0.00 2.32
242 244 5.986135 TGCATTGTACGCCTTTAAAAATTGT 59.014 32.000 0.00 0.00 0.00 2.71
243 245 7.145985 TGCATTGTACGCCTTTAAAAATTGTA 58.854 30.769 0.00 0.00 0.00 2.41
244 246 7.815068 TGCATTGTACGCCTTTAAAAATTGTAT 59.185 29.630 0.00 0.00 0.00 2.29
245 247 9.291664 GCATTGTACGCCTTTAAAAATTGTATA 57.708 29.630 0.00 0.00 0.00 1.47
290 292 6.864560 TCTTACAAGACAAATACGACGATG 57.135 37.500 0.00 0.00 0.00 3.84
291 293 3.991605 ACAAGACAAATACGACGATGC 57.008 42.857 0.00 0.00 0.00 3.91
292 294 2.671396 ACAAGACAAATACGACGATGCC 59.329 45.455 0.00 0.00 0.00 4.40
293 295 2.665649 AGACAAATACGACGATGCCA 57.334 45.000 0.00 0.00 0.00 4.92
294 296 3.179443 AGACAAATACGACGATGCCAT 57.821 42.857 0.00 0.00 0.00 4.40
295 297 3.531538 AGACAAATACGACGATGCCATT 58.468 40.909 0.00 0.00 0.00 3.16
296 298 3.938963 AGACAAATACGACGATGCCATTT 59.061 39.130 0.00 0.00 0.00 2.32
297 299 5.113383 AGACAAATACGACGATGCCATTTA 58.887 37.500 0.00 0.00 0.00 1.40
298 300 5.758296 AGACAAATACGACGATGCCATTTAT 59.242 36.000 0.00 0.00 0.00 1.40
299 301 6.926826 AGACAAATACGACGATGCCATTTATA 59.073 34.615 0.00 0.00 0.00 0.98
300 302 6.884187 ACAAATACGACGATGCCATTTATAC 58.116 36.000 0.00 0.00 0.00 1.47
301 303 6.480651 ACAAATACGACGATGCCATTTATACA 59.519 34.615 0.00 0.00 0.00 2.29
302 304 7.172532 ACAAATACGACGATGCCATTTATACAT 59.827 33.333 0.00 0.00 0.00 2.29
303 305 4.990543 ACGACGATGCCATTTATACATG 57.009 40.909 0.00 0.00 0.00 3.21
304 306 4.377021 ACGACGATGCCATTTATACATGT 58.623 39.130 2.69 2.69 0.00 3.21
305 307 4.814234 ACGACGATGCCATTTATACATGTT 59.186 37.500 2.30 0.00 0.00 2.71
306 308 5.050363 ACGACGATGCCATTTATACATGTTC 60.050 40.000 2.30 0.00 0.00 3.18
307 309 5.050431 CGACGATGCCATTTATACATGTTCA 60.050 40.000 2.30 0.00 0.00 3.18
308 310 6.510960 CGACGATGCCATTTATACATGTTCAA 60.511 38.462 2.30 0.00 0.00 2.69
309 311 7.275888 ACGATGCCATTTATACATGTTCAAT 57.724 32.000 2.30 0.00 0.00 2.57
310 312 7.362662 ACGATGCCATTTATACATGTTCAATC 58.637 34.615 2.30 0.00 0.00 2.67
311 313 6.803320 CGATGCCATTTATACATGTTCAATCC 59.197 38.462 2.30 0.00 0.00 3.01
312 314 7.521910 CGATGCCATTTATACATGTTCAATCCA 60.522 37.037 2.30 1.08 0.00 3.41
313 315 7.600231 TGCCATTTATACATGTTCAATCCAT 57.400 32.000 2.30 0.00 0.00 3.41
314 316 8.703378 TGCCATTTATACATGTTCAATCCATA 57.297 30.769 2.30 0.00 0.00 2.74
315 317 9.311676 TGCCATTTATACATGTTCAATCCATAT 57.688 29.630 2.30 0.00 0.00 1.78
346 348 9.908152 TGATATATATTAGTGGTCAAACTCGTG 57.092 33.333 0.00 0.00 0.00 4.35
347 349 8.758633 ATATATATTAGTGGTCAAACTCGTGC 57.241 34.615 0.00 0.00 0.00 5.34
348 350 2.605837 TTAGTGGTCAAACTCGTGCA 57.394 45.000 0.00 0.00 0.00 4.57
349 351 2.831685 TAGTGGTCAAACTCGTGCAT 57.168 45.000 0.00 0.00 0.00 3.96
350 352 1.512926 AGTGGTCAAACTCGTGCATC 58.487 50.000 0.00 0.00 0.00 3.91
351 353 1.202639 AGTGGTCAAACTCGTGCATCA 60.203 47.619 0.00 0.00 0.00 3.07
352 354 1.601903 GTGGTCAAACTCGTGCATCAA 59.398 47.619 0.00 0.00 0.00 2.57
353 355 2.032799 GTGGTCAAACTCGTGCATCAAA 59.967 45.455 0.00 0.00 0.00 2.69
354 356 2.290367 TGGTCAAACTCGTGCATCAAAG 59.710 45.455 0.00 0.00 0.00 2.77
355 357 2.548057 GGTCAAACTCGTGCATCAAAGA 59.452 45.455 0.00 0.00 0.00 2.52
356 358 3.545633 GTCAAACTCGTGCATCAAAGAC 58.454 45.455 0.00 0.00 0.00 3.01
357 359 3.002246 GTCAAACTCGTGCATCAAAGACA 59.998 43.478 0.00 0.00 0.00 3.41
358 360 3.248363 TCAAACTCGTGCATCAAAGACAG 59.752 43.478 0.00 0.00 0.00 3.51
359 361 2.533266 ACTCGTGCATCAAAGACAGT 57.467 45.000 0.00 0.00 0.00 3.55
360 362 3.660501 ACTCGTGCATCAAAGACAGTA 57.339 42.857 0.00 0.00 0.00 2.74
361 363 3.990092 ACTCGTGCATCAAAGACAGTAA 58.010 40.909 0.00 0.00 0.00 2.24
362 364 4.377021 ACTCGTGCATCAAAGACAGTAAA 58.623 39.130 0.00 0.00 0.00 2.01
363 365 4.814234 ACTCGTGCATCAAAGACAGTAAAA 59.186 37.500 0.00 0.00 0.00 1.52
364 366 5.295787 ACTCGTGCATCAAAGACAGTAAAAA 59.704 36.000 0.00 0.00 0.00 1.94
365 367 5.747565 TCGTGCATCAAAGACAGTAAAAAG 58.252 37.500 0.00 0.00 0.00 2.27
366 368 5.295787 TCGTGCATCAAAGACAGTAAAAAGT 59.704 36.000 0.00 0.00 0.00 2.66
367 369 5.621228 CGTGCATCAAAGACAGTAAAAAGTC 59.379 40.000 0.00 0.00 35.02 3.01
368 370 6.494842 GTGCATCAAAGACAGTAAAAAGTCA 58.505 36.000 0.00 0.00 37.23 3.41
369 371 6.972328 GTGCATCAAAGACAGTAAAAAGTCAA 59.028 34.615 0.00 0.00 37.23 3.18
370 372 7.649306 GTGCATCAAAGACAGTAAAAAGTCAAT 59.351 33.333 0.00 0.00 37.23 2.57
371 373 7.862372 TGCATCAAAGACAGTAAAAAGTCAATC 59.138 33.333 0.00 0.00 37.23 2.67
372 374 7.059945 GCATCAAAGACAGTAAAAAGTCAATCG 59.940 37.037 0.00 0.00 37.23 3.34
373 375 6.427150 TCAAAGACAGTAAAAAGTCAATCGC 58.573 36.000 0.00 0.00 37.23 4.58
374 376 4.647291 AGACAGTAAAAAGTCAATCGCG 57.353 40.909 0.00 0.00 37.23 5.87
375 377 3.120649 AGACAGTAAAAAGTCAATCGCGC 60.121 43.478 0.00 0.00 37.23 6.86
376 378 2.095919 ACAGTAAAAAGTCAATCGCGCC 60.096 45.455 0.00 0.00 0.00 6.53
377 379 2.159627 CAGTAAAAAGTCAATCGCGCCT 59.840 45.455 0.00 0.00 0.00 5.52
378 380 2.812011 AGTAAAAAGTCAATCGCGCCTT 59.188 40.909 0.00 0.00 0.00 4.35
379 381 3.998341 AGTAAAAAGTCAATCGCGCCTTA 59.002 39.130 0.00 0.00 0.00 2.69
380 382 4.634443 AGTAAAAAGTCAATCGCGCCTTAT 59.366 37.500 0.00 0.00 0.00 1.73
381 383 5.813672 AGTAAAAAGTCAATCGCGCCTTATA 59.186 36.000 0.00 0.00 0.00 0.98
382 384 5.751243 AAAAAGTCAATCGCGCCTTATAT 57.249 34.783 0.00 0.00 0.00 0.86
383 385 5.751243 AAAAGTCAATCGCGCCTTATATT 57.249 34.783 0.00 0.00 0.00 1.28
384 386 5.751243 AAAGTCAATCGCGCCTTATATTT 57.249 34.783 0.00 0.00 0.00 1.40
385 387 5.751243 AAGTCAATCGCGCCTTATATTTT 57.249 34.783 0.00 0.00 0.00 1.82
386 388 5.095691 AGTCAATCGCGCCTTATATTTTG 57.904 39.130 0.00 0.00 0.00 2.44
387 389 4.024048 AGTCAATCGCGCCTTATATTTTGG 60.024 41.667 0.00 0.00 0.00 3.28
388 390 3.252215 TCAATCGCGCCTTATATTTTGGG 59.748 43.478 0.00 0.00 0.00 4.12
389 391 2.623878 TCGCGCCTTATATTTTGGGA 57.376 45.000 0.00 0.00 0.00 4.37
390 392 2.920524 TCGCGCCTTATATTTTGGGAA 58.079 42.857 0.00 0.00 0.00 3.97
391 393 2.875933 TCGCGCCTTATATTTTGGGAAG 59.124 45.455 0.00 0.00 0.00 3.46
392 394 2.031157 CGCGCCTTATATTTTGGGAAGG 60.031 50.000 0.00 0.00 41.26 3.46
393 395 3.219281 GCGCCTTATATTTTGGGAAGGA 58.781 45.455 0.00 0.00 40.88 3.36
394 396 3.253432 GCGCCTTATATTTTGGGAAGGAG 59.747 47.826 0.00 1.55 40.88 3.69
395 397 3.821033 CGCCTTATATTTTGGGAAGGAGG 59.179 47.826 3.71 0.00 40.88 4.30
396 398 4.152647 GCCTTATATTTTGGGAAGGAGGG 58.847 47.826 3.71 0.00 40.88 4.30
397 399 4.141018 GCCTTATATTTTGGGAAGGAGGGA 60.141 45.833 3.71 0.00 40.88 4.20
398 400 5.635120 CCTTATATTTTGGGAAGGAGGGAG 58.365 45.833 0.00 0.00 40.88 4.30
412 414 8.962205 GGGAAGGAGGGAGTATATAGATATAGT 58.038 40.741 0.00 0.00 32.90 2.12
451 453 9.787532 GATGTAGATGTAGATAGATTCTTGAGC 57.212 37.037 0.00 0.00 35.79 4.26
452 454 8.116651 TGTAGATGTAGATAGATTCTTGAGCC 57.883 38.462 0.00 0.00 35.79 4.70
453 455 7.725844 TGTAGATGTAGATAGATTCTTGAGCCA 59.274 37.037 0.00 0.00 35.79 4.75
519 534 9.590451 CTAAGTTTTATTGATCAAATGCCACAT 57.410 29.630 13.09 2.27 0.00 3.21
539 554 0.904649 AGTGTGGAATGCATCTCGGA 59.095 50.000 0.00 0.00 0.00 4.55
566 583 0.179070 TGAACAAGCTACACGTGGCA 60.179 50.000 21.57 6.21 39.73 4.92
567 584 0.234884 GAACAAGCTACACGTGGCAC 59.765 55.000 21.57 7.79 39.73 5.01
568 585 1.164041 AACAAGCTACACGTGGCACC 61.164 55.000 21.57 5.10 39.73 5.01
579 596 1.002502 GTGGCACCCCTGACCTAAC 60.003 63.158 6.29 0.00 0.00 2.34
586 603 0.251916 CCCCTGACCTAACGAATGCA 59.748 55.000 0.00 0.00 0.00 3.96
591 608 4.082245 CCCTGACCTAACGAATGCAAAAAT 60.082 41.667 0.00 0.00 0.00 1.82
611 628 6.934048 AAATTTAGCTAGATTGTGAGCCTC 57.066 37.500 10.07 0.00 39.65 4.70
643 660 9.847224 TTGTCTCTCTACCTTAAAAGTTGAAAT 57.153 29.630 0.00 0.00 0.00 2.17
657 684 7.683437 AAAGTTGAAATTACTAGTAGCACCC 57.317 36.000 2.23 0.00 0.00 4.61
674 701 4.455606 GCACCCAGCTTAATCTCACTATT 58.544 43.478 0.00 0.00 41.15 1.73
675 702 4.274459 GCACCCAGCTTAATCTCACTATTG 59.726 45.833 0.00 0.00 41.15 1.90
680 707 7.094205 ACCCAGCTTAATCTCACTATTGTTTTG 60.094 37.037 0.00 0.00 0.00 2.44
733 760 5.957771 TTTGAGACATAGCTTATCCCACT 57.042 39.130 0.00 0.00 0.00 4.00
735 762 7.432148 TTTGAGACATAGCTTATCCCACTAA 57.568 36.000 0.00 0.00 0.00 2.24
737 764 7.618019 TGAGACATAGCTTATCCCACTAAAT 57.382 36.000 0.00 0.00 0.00 1.40
738 765 7.445121 TGAGACATAGCTTATCCCACTAAATG 58.555 38.462 0.00 0.00 0.00 2.32
740 767 7.445945 AGACATAGCTTATCCCACTAAATGAC 58.554 38.462 0.00 0.00 0.00 3.06
741 768 6.223852 ACATAGCTTATCCCACTAAATGACG 58.776 40.000 0.00 0.00 0.00 4.35
765 793 2.353610 CCCTGCTCATGGGCCAAAC 61.354 63.158 16.70 0.18 37.99 2.93
811 1062 4.778143 GCCCGCACGACCCATTCT 62.778 66.667 0.00 0.00 0.00 2.40
850 1101 1.170442 CCGGCGGAAACCAAATTACT 58.830 50.000 24.41 0.00 0.00 2.24
856 1107 4.879545 GGCGGAAACCAAATTACTATCTCA 59.120 41.667 0.00 0.00 0.00 3.27
894 1145 2.555199 CAAACGCAACAAAATTCCCCA 58.445 42.857 0.00 0.00 0.00 4.96
911 1167 1.755008 CACCCTCTCTCGTCCTCCC 60.755 68.421 0.00 0.00 0.00 4.30
1152 1445 0.953471 CCACGCCCACTTCATTTCGA 60.953 55.000 0.00 0.00 0.00 3.71
1162 1455 3.074412 ACTTCATTTCGATTCCGTGCTT 58.926 40.909 0.00 0.00 37.05 3.91
1164 1457 2.694213 TCATTTCGATTCCGTGCTTGA 58.306 42.857 0.00 0.00 37.05 3.02
1171 1464 0.611618 ATTCCGTGCTTGATTGGCCA 60.612 50.000 0.00 0.00 0.00 5.36
1179 1472 1.755179 CTTGATTGGCCAGATTCGGT 58.245 50.000 5.11 0.00 0.00 4.69
1189 1482 0.811915 CAGATTCGGTCCGTCTCACT 59.188 55.000 11.88 2.63 0.00 3.41
1209 1502 2.035442 GGTGAGGGCTCTGCGTTTC 61.035 63.158 0.00 0.00 0.00 2.78
1210 1503 1.301716 GTGAGGGCTCTGCGTTTCA 60.302 57.895 0.00 0.00 0.00 2.69
1236 1529 4.148825 GTCCGAGATGGTGCGGCT 62.149 66.667 0.00 0.00 46.79 5.52
1304 1597 3.437795 TCGTCTTCGGCCTCGTCC 61.438 66.667 0.00 0.00 37.69 4.79
1361 1669 2.106683 CGTGGGGGACATTTCTCGC 61.107 63.158 0.00 0.00 35.67 5.03
1378 1686 2.404215 TCGCTTGACTTAGTTCAGTGC 58.596 47.619 0.00 0.00 0.00 4.40
1416 1724 4.441792 TGAAATGTGTGTAGGATGATCCG 58.558 43.478 5.71 0.00 42.75 4.18
1480 1788 1.961180 GCTGTGGGTGGACGATAGCT 61.961 60.000 0.00 0.00 38.64 3.32
1527 1835 1.218316 CCGGGTCAGTTCTGCTACC 59.782 63.158 0.00 3.11 0.00 3.18
1545 1853 5.106157 TGCTACCGTACTAACTTTACCTGAC 60.106 44.000 0.00 0.00 0.00 3.51
1590 1898 2.143122 TCAGCAAGCCGTTGTCTTAAG 58.857 47.619 0.00 0.00 35.92 1.85
1591 1899 2.143122 CAGCAAGCCGTTGTCTTAAGA 58.857 47.619 0.00 0.00 35.92 2.10
1595 1903 2.996621 CAAGCCGTTGTCTTAAGAGAGG 59.003 50.000 5.12 4.50 31.07 3.69
1613 1921 2.975732 GGACCCTTTAGTTAGTCCCG 57.024 55.000 0.00 0.00 42.49 5.14
1656 1966 5.334414 GCTGATTAGTTGGTGACTTGAACTG 60.334 44.000 0.00 0.00 39.86 3.16
1664 1974 2.538939 GGTGACTTGAACTGCGTTTGAC 60.539 50.000 0.00 0.00 0.00 3.18
1778 2088 1.933853 GGCGTGAAGACATCATGGTAC 59.066 52.381 2.33 0.00 43.95 3.34
1797 2107 6.106673 TGGTACTACTGCTGCTTTTATCTTC 58.893 40.000 0.00 0.00 0.00 2.87
1799 2109 6.763610 GGTACTACTGCTGCTTTTATCTTCAT 59.236 38.462 0.00 0.00 0.00 2.57
1800 2110 7.281100 GGTACTACTGCTGCTTTTATCTTCATT 59.719 37.037 0.00 0.00 0.00 2.57
1801 2111 7.693969 ACTACTGCTGCTTTTATCTTCATTT 57.306 32.000 0.00 0.00 0.00 2.32
1802 2112 8.792830 ACTACTGCTGCTTTTATCTTCATTTA 57.207 30.769 0.00 0.00 0.00 1.40
1895 2205 5.755375 TCATTTTGTTATCGATCAGGAGAGC 59.245 40.000 0.00 0.00 0.00 4.09
1945 2255 9.226606 CTGATGATACCTGGTTGTTAAGTTTTA 57.773 33.333 3.84 0.00 0.00 1.52
1975 2285 8.562892 CCTTGTTTGGATAGCTTATTGTCATAG 58.437 37.037 0.00 0.00 0.00 2.23
1976 2286 9.113838 CTTGTTTGGATAGCTTATTGTCATAGT 57.886 33.333 0.00 0.00 0.00 2.12
2030 2340 3.976169 TGTGCCAAGTTTGCTGTTAATC 58.024 40.909 0.16 0.00 0.00 1.75
2122 2433 5.171339 ACCAAGATTCAGAATGCTACTGT 57.829 39.130 0.00 0.00 36.81 3.55
2272 2585 3.057245 GGAAGCTTAGTTTTCTTGGCAGG 60.057 47.826 0.00 0.00 0.00 4.85
2415 2790 5.514274 TGAGGAAAAATGTTTCTGACCAC 57.486 39.130 8.27 0.00 42.45 4.16
2733 3108 6.899393 AAGTTATTGTGTCATGTCATGGTT 57.101 33.333 12.90 0.00 0.00 3.67
3061 3436 2.507058 TGCTGGCAGAGGTTTATCTCAT 59.493 45.455 20.86 0.00 36.30 2.90
3085 3460 1.884579 AGAAGCATTGCCAGAAGTGTG 59.115 47.619 4.70 0.00 0.00 3.82
3094 3469 2.434336 TGCCAGAAGTGTGTCTGTTACT 59.566 45.455 1.84 0.00 43.02 2.24
3133 3508 2.501316 TCATGTTGATCCTGATGTCCGT 59.499 45.455 0.00 0.00 0.00 4.69
3149 3524 1.705337 CCGTGCATCCGTTCATGGTC 61.705 60.000 0.00 0.00 35.25 4.02
3168 3543 0.539051 CTTACTGTCTCCCCTGGCAG 59.461 60.000 7.75 7.75 35.31 4.85
3170 3545 0.178903 TACTGTCTCCCCTGGCAGTT 60.179 55.000 14.43 0.00 41.67 3.16
3218 3593 2.176889 GCACTCCAGAACAGGGTAGTA 58.823 52.381 0.00 0.00 0.00 1.82
3234 3609 8.660435 ACAGGGTAGTAAAGATGTATGCATAAT 58.340 33.333 8.28 4.65 35.07 1.28
3264 3639 7.119699 CCTTGATGTTAGAGCTGACATACAAAA 59.880 37.037 7.74 1.79 39.47 2.44
3324 3699 2.101415 CTGAGGCACACGATTCTATCCA 59.899 50.000 0.00 0.00 0.00 3.41
3351 3726 6.174720 TCCTATTAACTCCAGTAGCAATGG 57.825 41.667 0.00 0.00 39.33 3.16
3412 3787 3.891049 AGATGGTGATAAAAGGCCACTC 58.109 45.455 5.01 0.00 33.42 3.51
3448 3823 2.361757 CAACACAAATGGGCTCACAGAA 59.638 45.455 0.00 0.00 0.00 3.02
3491 3866 5.282055 TCAAGCAACTATGGTATCTCCTG 57.718 43.478 0.00 0.00 35.91 3.86
3620 3995 2.430465 AGAAAGCATTGCACTCGTCAT 58.570 42.857 11.91 0.00 0.00 3.06
3654 4029 4.855715 ACGTCGATCATAAGGATGATGT 57.144 40.909 5.18 0.00 45.82 3.06
3710 4085 2.484264 GCAAACGTAGAAGGAACTGCAT 59.516 45.455 0.00 0.00 40.86 3.96
3811 4186 1.343465 TCTCGGAAGTCAGTTTCACCC 59.657 52.381 0.00 0.00 0.00 4.61
3974 4349 5.046910 AGACGAAGCAATAAAACATGTGG 57.953 39.130 0.00 0.00 0.00 4.17
4002 4377 5.454062 ACCAGACTCTATACTTGCTCAGAT 58.546 41.667 0.00 0.00 0.00 2.90
4007 4382 6.833416 AGACTCTATACTTGCTCAGATGAAGT 59.167 38.462 0.00 0.00 34.36 3.01
4012 4387 1.130749 CTTGCTCAGATGAAGTGCAGC 59.869 52.381 0.00 0.00 36.91 5.25
4061 4436 1.375268 GGAGGCACAGACTCAGCAC 60.375 63.158 1.86 0.00 39.95 4.40
4099 4474 2.379907 TCCTTTCTCAAGCAGGGGAATT 59.620 45.455 0.00 0.00 0.00 2.17
4104 4479 1.829222 CTCAAGCAGGGGAATTGCATT 59.171 47.619 0.00 0.00 43.92 3.56
4155 4530 4.508662 GAAAATTCCACTGGATCTCGACT 58.491 43.478 0.00 0.00 0.00 4.18
4158 4533 1.464734 TCCACTGGATCTCGACTCAC 58.535 55.000 0.00 0.00 0.00 3.51
4183 4558 8.727910 ACTAAAGCTAATGGTAAAGTAAACAGC 58.272 33.333 0.00 0.00 0.00 4.40
4203 4578 7.792374 ACAGCGATGTTATTGTGAATCTTAT 57.208 32.000 0.00 0.00 0.00 1.73
4209 4584 8.491152 CGATGTTATTGTGAATCTTATGGAGAC 58.509 37.037 0.00 0.00 37.17 3.36
4230 4605 3.821600 ACGCAGAAGTCTGACTCTTCTAA 59.178 43.478 11.31 0.00 46.38 2.10
4390 4765 1.004440 GGCAGAGAAGGAACGTGCT 60.004 57.895 0.00 0.00 34.46 4.40
4406 4781 6.415206 AACGTGCTATAAGCCCTTCTATTA 57.585 37.500 0.00 0.00 41.51 0.98
4408 4783 6.221659 ACGTGCTATAAGCCCTTCTATTAAC 58.778 40.000 0.00 0.00 41.51 2.01
4409 4784 6.041751 ACGTGCTATAAGCCCTTCTATTAACT 59.958 38.462 0.00 0.00 41.51 2.24
4464 4839 6.760298 TCTCATCAAGATCAGAATGTAGCAAC 59.240 38.462 0.00 0.00 37.40 4.17
4468 4843 4.727507 AGATCAGAATGTAGCAACGAGT 57.272 40.909 0.00 0.00 37.40 4.18
4492 4867 5.700722 ATGCATCACAGGTTAATAGCATG 57.299 39.130 0.00 0.00 39.69 4.06
4588 4963 8.514330 AAGTATCGACTTCTAGAGTGAAGAAT 57.486 34.615 10.68 4.74 42.50 2.40
4637 5012 1.593006 CAAATGGTAGACGCCGATCAC 59.407 52.381 0.00 0.00 0.00 3.06
4643 5018 2.279502 TAGACGCCGATCACCTGCAC 62.280 60.000 0.00 0.00 0.00 4.57
4653 5028 3.303461 CGATCACCTGCACGTTGTAAAAA 60.303 43.478 0.00 0.00 0.00 1.94
4703 5078 4.889409 AGGCAGTTCTTTCTCATGAAAACA 59.111 37.500 0.00 0.00 41.09 2.83
4758 5133 3.562973 CCGAATGCTGCTGAATGTAGAAT 59.437 43.478 0.00 0.00 0.00 2.40
4884 5259 6.680810 TGGAGTTTGCTAATGTGATTTCAAG 58.319 36.000 0.00 0.00 0.00 3.02
4893 5268 6.038714 GCTAATGTGATTTCAAGGGGAAGTAG 59.961 42.308 0.00 0.00 36.72 2.57
4956 5331 4.594920 TCAAAGAGGTTCATCTGAGAAGGT 59.405 41.667 0.00 0.00 0.00 3.50
5011 5386 0.112995 TTTCCCAGCCTGCTGACATT 59.887 50.000 20.29 0.00 46.30 2.71
5018 5393 3.538591 CAGCCTGCTGACATTAAGATGA 58.461 45.455 13.85 0.00 46.30 2.92
5025 5400 5.981174 TGCTGACATTAAGATGACTGATGA 58.019 37.500 0.00 0.00 36.73 2.92
5153 5528 1.089112 TGAAACATGCGCTCCTGATG 58.911 50.000 9.73 5.98 0.00 3.07
5181 5556 0.947244 AAGAACAGAGTGCGCAAAGG 59.053 50.000 14.00 4.66 0.00 3.11
5284 5659 4.512944 TCTGAAGCTGAAGTTGACACAATC 59.487 41.667 0.00 0.00 0.00 2.67
5305 5680 2.926779 AGGGCTGCAGAGTGCTCA 60.927 61.111 20.43 0.00 45.31 4.26
5316 5691 2.551032 CAGAGTGCTCAACAAATGCTGA 59.449 45.455 1.82 0.00 0.00 4.26
5458 5833 3.243643 CGTGGAGCAGCAAAAAGAAAAAG 59.756 43.478 0.00 0.00 0.00 2.27
5478 5853 2.025605 AGGTTGCAGATGTGATGGATGT 60.026 45.455 0.00 0.00 0.00 3.06
5486 5861 5.236047 GCAGATGTGATGGATGTTTCTACTC 59.764 44.000 0.00 0.00 0.00 2.59
5554 5929 1.451067 CCAGGAGCAGCAGAAAGAAG 58.549 55.000 0.00 0.00 0.00 2.85
5717 6092 3.567164 GGAGAATGTACCATCCAATGCTG 59.433 47.826 0.00 0.00 0.00 4.41
5782 6157 6.582677 TCCAAATGTATCACAAAATCGGTT 57.417 33.333 0.00 0.00 0.00 4.44
5920 6301 7.039644 AGGAAGGATTGTATGTCGATACTTAGG 60.040 40.741 0.00 0.00 40.26 2.69
6039 6420 4.340246 TGCTGCAGCTGGGAGGTG 62.340 66.667 36.61 0.00 45.86 4.00
6085 6502 7.500892 TGTTTCAGAGGCTTCATGTTTTAGTTA 59.499 33.333 0.00 0.00 0.00 2.24
6106 6523 8.575649 AGTTATTTATACCTTGTTCTTGTGGG 57.424 34.615 0.00 0.00 0.00 4.61
6123 6540 4.836825 TGTGGGCTAGATTTCTCTTTCAG 58.163 43.478 0.00 0.00 32.66 3.02
6148 6568 8.204836 AGAAAAGAGTTGTACATAGTCACTTGT 58.795 33.333 0.00 0.00 0.00 3.16
6181 6601 6.016360 TCCATTTCACGACATCTGAATGTTTT 60.016 34.615 0.00 0.00 46.20 2.43
6183 6603 7.358600 CCATTTCACGACATCTGAATGTTTTTG 60.359 37.037 0.00 0.00 46.20 2.44
6184 6604 4.536065 TCACGACATCTGAATGTTTTTGC 58.464 39.130 0.00 0.00 46.20 3.68
6346 6773 0.455815 GAAATGGCGGCAACTAAGGG 59.544 55.000 18.31 0.00 0.00 3.95
6363 6790 0.611714 GGGAACGTACTGGACATGGT 59.388 55.000 0.00 0.00 0.00 3.55
6423 6850 4.646040 TGCATTTCTCCATCATTGGTAAGG 59.354 41.667 0.00 0.00 44.06 2.69
6424 6851 4.500375 GCATTTCTCCATCATTGGTAAGGC 60.500 45.833 0.00 0.00 44.06 4.35
6425 6852 4.591321 TTTCTCCATCATTGGTAAGGCT 57.409 40.909 0.00 0.00 44.06 4.58
6426 6853 3.565764 TCTCCATCATTGGTAAGGCTG 57.434 47.619 0.00 0.00 44.06 4.85
6460 6887 7.826252 ACACACTTGTTTATCTGATAAGCATCT 59.174 33.333 22.14 11.17 36.16 2.90
6464 6892 7.831193 ACTTGTTTATCTGATAAGCATCTTGGT 59.169 33.333 22.14 14.66 36.16 3.67
6501 6929 6.854892 GCTGCAGTTCTATATATGCACTTTTG 59.145 38.462 16.64 0.00 43.34 2.44
6524 6952 6.403049 TGTCTGATACGCCTTTCATTTTCTA 58.597 36.000 0.00 0.00 0.00 2.10
6546 6974 1.595382 AGGACACACTGAAGCGTGC 60.595 57.895 0.00 0.00 38.45 5.34
6547 6975 2.546321 GACACACTGAAGCGTGCG 59.454 61.111 0.00 0.00 38.45 5.34
6624 7052 0.463620 AAACATGGCGCCAGTTTTGT 59.536 45.000 32.87 29.30 31.95 2.83
6932 7363 1.532868 GAGCCGTCATGTTGATATGCC 59.467 52.381 0.00 0.00 0.00 4.40
7153 7593 0.883833 GACCATTGTGGCTCTGTTGG 59.116 55.000 0.00 0.00 42.67 3.77
7181 7623 4.759516 TTTATTTTTGGCGAGGACTGTC 57.240 40.909 0.00 0.00 0.00 3.51
7194 7636 0.784778 GACTGTCGCTGCTGTGTTAC 59.215 55.000 3.96 0.00 0.00 2.50
7197 7639 1.986378 CTGTCGCTGCTGTGTTACTAC 59.014 52.381 3.96 0.00 0.00 2.73
7201 7643 3.079578 TCGCTGCTGTGTTACTACTACT 58.920 45.455 3.96 0.00 0.00 2.57
7202 7644 4.093998 GTCGCTGCTGTGTTACTACTACTA 59.906 45.833 3.96 0.00 0.00 1.82
7203 7645 4.093998 TCGCTGCTGTGTTACTACTACTAC 59.906 45.833 3.96 0.00 0.00 2.73
7205 7647 5.292834 CGCTGCTGTGTTACTACTACTACTA 59.707 44.000 0.00 0.00 0.00 1.82
7206 7648 6.018098 CGCTGCTGTGTTACTACTACTACTAT 60.018 42.308 0.00 0.00 0.00 2.12
7207 7649 7.170489 CGCTGCTGTGTTACTACTACTACTATA 59.830 40.741 0.00 0.00 0.00 1.31
7208 7650 9.001542 GCTGCTGTGTTACTACTACTACTATAT 57.998 37.037 0.00 0.00 0.00 0.86
7231 7673 1.374343 CTAGTAGACTGCCCGTGCGA 61.374 60.000 0.00 0.00 41.78 5.10
7290 7732 7.797038 ACATGTTAACTTTTTAAGGTCTCGT 57.203 32.000 7.22 0.00 0.00 4.18
7420 7862 6.834451 TCCTCTCTGTTAGAATAAATCCGAGT 59.166 38.462 0.00 0.00 32.46 4.18
7859 8301 4.095483 CCATGTACATTGGACTTGAGCTTC 59.905 45.833 14.79 0.00 0.00 3.86
7871 8313 1.260538 TGAGCTTCTCCCGTGAGCAT 61.261 55.000 0.00 0.00 38.58 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.129209 GAATCAATTCCACTTTACTTTACTTGC 57.871 33.333 0.00 0.00 0.00 4.01
86 88 1.686587 CCACCCTTTGTCCAACCTTTC 59.313 52.381 0.00 0.00 0.00 2.62
98 100 2.358322 TTTTCTTCTCGCCACCCTTT 57.642 45.000 0.00 0.00 0.00 3.11
137 139 6.865651 ATTTTGGGAAGGAGGGAGTATAAT 57.134 37.500 0.00 0.00 0.00 1.28
138 140 7.964730 ATATTTTGGGAAGGAGGGAGTATAA 57.035 36.000 0.00 0.00 0.00 0.98
140 142 7.018650 CCTTATATTTTGGGAAGGAGGGAGTAT 59.981 40.741 0.00 0.00 40.88 2.12
142 144 5.134509 CCTTATATTTTGGGAAGGAGGGAGT 59.865 44.000 0.00 0.00 40.88 3.85
143 145 5.635120 CCTTATATTTTGGGAAGGAGGGAG 58.365 45.833 0.00 0.00 40.88 4.30
144 146 4.141018 GCCTTATATTTTGGGAAGGAGGGA 60.141 45.833 3.71 0.00 40.88 4.20
145 147 4.152647 GCCTTATATTTTGGGAAGGAGGG 58.847 47.826 3.71 0.00 40.88 4.30
146 148 3.821033 CGCCTTATATTTTGGGAAGGAGG 59.179 47.826 3.71 0.00 40.88 4.30
147 149 3.253432 GCGCCTTATATTTTGGGAAGGAG 59.747 47.826 0.00 1.55 40.88 3.69
148 150 3.219281 GCGCCTTATATTTTGGGAAGGA 58.781 45.455 0.00 0.00 40.88 3.36
149 151 2.031157 CGCGCCTTATATTTTGGGAAGG 60.031 50.000 0.00 0.00 41.26 3.46
150 152 2.031157 CCGCGCCTTATATTTTGGGAAG 60.031 50.000 0.00 0.00 0.00 3.46
151 153 1.950909 CCGCGCCTTATATTTTGGGAA 59.049 47.619 0.00 0.00 0.00 3.97
152 154 1.134037 ACCGCGCCTTATATTTTGGGA 60.134 47.619 0.00 0.00 0.00 4.37
153 155 1.314730 ACCGCGCCTTATATTTTGGG 58.685 50.000 0.00 0.00 0.00 4.12
154 156 3.112580 CAAACCGCGCCTTATATTTTGG 58.887 45.455 0.00 0.00 0.00 3.28
155 157 3.789224 GTCAAACCGCGCCTTATATTTTG 59.211 43.478 0.00 1.47 0.00 2.44
156 158 3.692593 AGTCAAACCGCGCCTTATATTTT 59.307 39.130 0.00 0.00 0.00 1.82
157 159 3.275999 AGTCAAACCGCGCCTTATATTT 58.724 40.909 0.00 0.00 0.00 1.40
158 160 2.914059 AGTCAAACCGCGCCTTATATT 58.086 42.857 0.00 0.00 0.00 1.28
159 161 2.614829 AGTCAAACCGCGCCTTATAT 57.385 45.000 0.00 0.00 0.00 0.86
160 162 2.389962 AAGTCAAACCGCGCCTTATA 57.610 45.000 0.00 0.00 0.00 0.98
161 163 1.530323 AAAGTCAAACCGCGCCTTAT 58.470 45.000 0.00 0.00 0.00 1.73
162 164 1.264826 GAAAAGTCAAACCGCGCCTTA 59.735 47.619 0.00 0.00 0.00 2.69
163 165 0.030235 GAAAAGTCAAACCGCGCCTT 59.970 50.000 0.00 0.00 0.00 4.35
164 166 0.818040 AGAAAAGTCAAACCGCGCCT 60.818 50.000 0.00 0.00 0.00 5.52
165 167 0.660300 CAGAAAAGTCAAACCGCGCC 60.660 55.000 0.00 0.00 0.00 6.53
166 168 0.660300 CCAGAAAAGTCAAACCGCGC 60.660 55.000 0.00 0.00 0.00 6.86
167 169 0.660300 GCCAGAAAAGTCAAACCGCG 60.660 55.000 0.00 0.00 0.00 6.46
168 170 0.318699 GGCCAGAAAAGTCAAACCGC 60.319 55.000 0.00 0.00 0.00 5.68
169 171 1.318576 AGGCCAGAAAAGTCAAACCG 58.681 50.000 5.01 0.00 0.00 4.44
170 172 2.287608 CGAAGGCCAGAAAAGTCAAACC 60.288 50.000 5.01 0.00 0.00 3.27
171 173 2.357952 ACGAAGGCCAGAAAAGTCAAAC 59.642 45.455 5.01 0.00 0.00 2.93
172 174 2.650322 ACGAAGGCCAGAAAAGTCAAA 58.350 42.857 5.01 0.00 0.00 2.69
173 175 2.341846 ACGAAGGCCAGAAAAGTCAA 57.658 45.000 5.01 0.00 0.00 3.18
174 176 1.946768 CAACGAAGGCCAGAAAAGTCA 59.053 47.619 5.01 0.00 0.00 3.41
175 177 1.335051 GCAACGAAGGCCAGAAAAGTC 60.335 52.381 5.01 0.00 0.00 3.01
176 178 0.668535 GCAACGAAGGCCAGAAAAGT 59.331 50.000 5.01 0.00 0.00 2.66
177 179 0.667993 TGCAACGAAGGCCAGAAAAG 59.332 50.000 5.01 0.00 0.00 2.27
178 180 0.383949 GTGCAACGAAGGCCAGAAAA 59.616 50.000 5.01 0.00 0.00 2.29
179 181 0.749818 TGTGCAACGAAGGCCAGAAA 60.750 50.000 5.01 0.00 42.39 2.52
180 182 0.749818 TTGTGCAACGAAGGCCAGAA 60.750 50.000 5.01 0.00 42.39 3.02
181 183 1.153066 TTGTGCAACGAAGGCCAGA 60.153 52.632 5.01 0.00 42.39 3.86
182 184 1.008538 GTTGTGCAACGAAGGCCAG 60.009 57.895 5.01 0.00 42.39 4.85
183 185 1.034838 AAGTTGTGCAACGAAGGCCA 61.035 50.000 5.01 0.00 45.50 5.36
184 186 0.102300 AAAGTTGTGCAACGAAGGCC 59.898 50.000 9.10 0.00 45.50 5.19
185 187 1.199624 CAAAGTTGTGCAACGAAGGC 58.800 50.000 9.10 0.00 45.50 4.35
186 188 2.097466 AGTCAAAGTTGTGCAACGAAGG 59.903 45.455 9.10 2.22 45.50 3.46
187 189 3.405170 AGTCAAAGTTGTGCAACGAAG 57.595 42.857 9.10 4.04 45.50 3.79
188 190 6.606234 TTATAGTCAAAGTTGTGCAACGAA 57.394 33.333 9.10 0.00 45.50 3.85
189 191 6.795098 ATTATAGTCAAAGTTGTGCAACGA 57.205 33.333 9.10 0.00 45.50 3.85
190 192 7.851822 AAATTATAGTCAAAGTTGTGCAACG 57.148 32.000 9.10 0.00 45.50 4.10
191 193 9.243637 TGAAAATTATAGTCAAAGTTGTGCAAC 57.756 29.630 6.94 6.94 41.45 4.17
192 194 9.979578 ATGAAAATTATAGTCAAAGTTGTGCAA 57.020 25.926 0.00 0.00 0.00 4.08
193 195 9.409312 CATGAAAATTATAGTCAAAGTTGTGCA 57.591 29.630 0.00 0.00 0.00 4.57
194 196 8.375465 GCATGAAAATTATAGTCAAAGTTGTGC 58.625 33.333 0.00 0.00 0.00 4.57
195 197 9.409312 TGCATGAAAATTATAGTCAAAGTTGTG 57.591 29.630 0.00 0.00 0.00 3.33
202 204 9.715123 CGTACAATGCATGAAAATTATAGTCAA 57.285 29.630 0.00 0.00 0.00 3.18
203 205 7.855409 GCGTACAATGCATGAAAATTATAGTCA 59.145 33.333 0.00 0.00 0.00 3.41
204 206 7.323656 GGCGTACAATGCATGAAAATTATAGTC 59.676 37.037 0.00 0.00 0.00 2.59
205 207 7.013274 AGGCGTACAATGCATGAAAATTATAGT 59.987 33.333 0.00 0.00 0.00 2.12
206 208 7.362662 AGGCGTACAATGCATGAAAATTATAG 58.637 34.615 0.00 0.00 0.00 1.31
207 209 7.270757 AGGCGTACAATGCATGAAAATTATA 57.729 32.000 0.00 0.00 0.00 0.98
208 210 6.147864 AGGCGTACAATGCATGAAAATTAT 57.852 33.333 0.00 0.00 0.00 1.28
209 211 5.574891 AGGCGTACAATGCATGAAAATTA 57.425 34.783 0.00 0.00 0.00 1.40
210 212 4.454728 AGGCGTACAATGCATGAAAATT 57.545 36.364 0.00 0.00 0.00 1.82
211 213 4.454728 AAGGCGTACAATGCATGAAAAT 57.545 36.364 0.00 0.00 0.00 1.82
212 214 3.932545 AAGGCGTACAATGCATGAAAA 57.067 38.095 0.00 0.00 0.00 2.29
213 215 3.932545 AAAGGCGTACAATGCATGAAA 57.067 38.095 0.00 0.00 0.00 2.69
214 216 5.378292 TTTAAAGGCGTACAATGCATGAA 57.622 34.783 0.00 0.00 0.00 2.57
215 217 5.378292 TTTTAAAGGCGTACAATGCATGA 57.622 34.783 0.00 0.00 0.00 3.07
216 218 6.645700 ATTTTTAAAGGCGTACAATGCATG 57.354 33.333 0.00 0.00 0.00 4.06
217 219 6.648725 ACAATTTTTAAAGGCGTACAATGCAT 59.351 30.769 0.00 0.00 0.00 3.96
218 220 5.986135 ACAATTTTTAAAGGCGTACAATGCA 59.014 32.000 0.00 0.00 0.00 3.96
219 221 6.460664 ACAATTTTTAAAGGCGTACAATGC 57.539 33.333 0.00 0.00 0.00 3.56
267 269 5.287752 GCATCGTCGTATTTGTCTTGTAAGA 59.712 40.000 0.00 0.00 0.00 2.10
268 270 5.481472 GCATCGTCGTATTTGTCTTGTAAG 58.519 41.667 0.00 0.00 0.00 2.34
269 271 4.327898 GGCATCGTCGTATTTGTCTTGTAA 59.672 41.667 0.00 0.00 0.00 2.41
270 272 3.861113 GGCATCGTCGTATTTGTCTTGTA 59.139 43.478 0.00 0.00 0.00 2.41
271 273 2.671396 GGCATCGTCGTATTTGTCTTGT 59.329 45.455 0.00 0.00 0.00 3.16
272 274 2.670905 TGGCATCGTCGTATTTGTCTTG 59.329 45.455 0.00 0.00 0.00 3.02
273 275 2.967362 TGGCATCGTCGTATTTGTCTT 58.033 42.857 0.00 0.00 0.00 3.01
274 276 2.665649 TGGCATCGTCGTATTTGTCT 57.334 45.000 0.00 0.00 0.00 3.41
275 277 3.944422 AATGGCATCGTCGTATTTGTC 57.056 42.857 0.00 0.00 0.00 3.18
276 278 6.480651 TGTATAAATGGCATCGTCGTATTTGT 59.519 34.615 0.00 0.00 0.00 2.83
277 279 6.883129 TGTATAAATGGCATCGTCGTATTTG 58.117 36.000 0.00 0.00 0.00 2.32
278 280 7.172532 ACATGTATAAATGGCATCGTCGTATTT 59.827 33.333 7.81 0.00 31.46 1.40
279 281 6.649141 ACATGTATAAATGGCATCGTCGTATT 59.351 34.615 7.81 0.00 31.46 1.89
280 282 6.163476 ACATGTATAAATGGCATCGTCGTAT 58.837 36.000 7.81 0.00 31.46 3.06
281 283 5.534407 ACATGTATAAATGGCATCGTCGTA 58.466 37.500 7.81 0.00 31.46 3.43
282 284 4.377021 ACATGTATAAATGGCATCGTCGT 58.623 39.130 7.81 0.00 31.46 4.34
283 285 4.990543 ACATGTATAAATGGCATCGTCG 57.009 40.909 7.81 0.00 31.46 5.12
284 286 6.299023 TGAACATGTATAAATGGCATCGTC 57.701 37.500 7.81 0.00 31.46 4.20
285 287 6.691754 TTGAACATGTATAAATGGCATCGT 57.308 33.333 7.81 0.00 31.46 3.73
286 288 6.803320 GGATTGAACATGTATAAATGGCATCG 59.197 38.462 7.81 0.00 31.46 3.84
287 289 7.660112 TGGATTGAACATGTATAAATGGCATC 58.340 34.615 7.81 3.83 31.46 3.91
288 290 7.600231 TGGATTGAACATGTATAAATGGCAT 57.400 32.000 7.81 0.00 31.46 4.40
289 291 7.600231 ATGGATTGAACATGTATAAATGGCA 57.400 32.000 7.81 2.73 31.46 4.92
320 322 9.908152 CACGAGTTTGACCACTAATATATATCA 57.092 33.333 0.00 0.00 0.00 2.15
321 323 8.861101 GCACGAGTTTGACCACTAATATATATC 58.139 37.037 0.00 0.00 0.00 1.63
322 324 8.364894 TGCACGAGTTTGACCACTAATATATAT 58.635 33.333 0.00 0.00 0.00 0.86
323 325 7.718525 TGCACGAGTTTGACCACTAATATATA 58.281 34.615 0.00 0.00 0.00 0.86
324 326 6.578944 TGCACGAGTTTGACCACTAATATAT 58.421 36.000 0.00 0.00 0.00 0.86
325 327 5.968254 TGCACGAGTTTGACCACTAATATA 58.032 37.500 0.00 0.00 0.00 0.86
326 328 4.827692 TGCACGAGTTTGACCACTAATAT 58.172 39.130 0.00 0.00 0.00 1.28
327 329 4.260139 TGCACGAGTTTGACCACTAATA 57.740 40.909 0.00 0.00 0.00 0.98
328 330 3.120321 TGCACGAGTTTGACCACTAAT 57.880 42.857 0.00 0.00 0.00 1.73
329 331 2.605837 TGCACGAGTTTGACCACTAA 57.394 45.000 0.00 0.00 0.00 2.24
330 332 2.036604 TGATGCACGAGTTTGACCACTA 59.963 45.455 0.00 0.00 0.00 2.74
331 333 1.202639 TGATGCACGAGTTTGACCACT 60.203 47.619 0.00 0.00 0.00 4.00
332 334 1.225855 TGATGCACGAGTTTGACCAC 58.774 50.000 0.00 0.00 0.00 4.16
333 335 1.960417 TTGATGCACGAGTTTGACCA 58.040 45.000 0.00 0.00 0.00 4.02
334 336 2.548057 TCTTTGATGCACGAGTTTGACC 59.452 45.455 0.00 0.00 0.00 4.02
335 337 3.002246 TGTCTTTGATGCACGAGTTTGAC 59.998 43.478 0.00 0.00 0.00 3.18
336 338 3.202097 TGTCTTTGATGCACGAGTTTGA 58.798 40.909 0.00 0.00 0.00 2.69
337 339 3.002656 ACTGTCTTTGATGCACGAGTTTG 59.997 43.478 0.00 0.00 0.00 2.93
338 340 3.206150 ACTGTCTTTGATGCACGAGTTT 58.794 40.909 0.00 0.00 0.00 2.66
339 341 2.838736 ACTGTCTTTGATGCACGAGTT 58.161 42.857 0.00 0.00 0.00 3.01
340 342 2.533266 ACTGTCTTTGATGCACGAGT 57.467 45.000 0.00 0.00 0.00 4.18
341 343 4.990543 TTTACTGTCTTTGATGCACGAG 57.009 40.909 0.00 0.00 0.00 4.18
342 344 5.295787 ACTTTTTACTGTCTTTGATGCACGA 59.704 36.000 0.00 0.00 0.00 4.35
343 345 5.510671 ACTTTTTACTGTCTTTGATGCACG 58.489 37.500 0.00 0.00 0.00 5.34
344 346 6.494842 TGACTTTTTACTGTCTTTGATGCAC 58.505 36.000 0.00 0.00 34.57 4.57
345 347 6.691754 TGACTTTTTACTGTCTTTGATGCA 57.308 33.333 0.00 0.00 34.57 3.96
346 348 7.059945 CGATTGACTTTTTACTGTCTTTGATGC 59.940 37.037 0.00 0.00 34.57 3.91
347 349 7.059945 GCGATTGACTTTTTACTGTCTTTGATG 59.940 37.037 0.00 0.00 34.57 3.07
348 350 7.078228 GCGATTGACTTTTTACTGTCTTTGAT 58.922 34.615 0.00 0.00 34.57 2.57
349 351 6.427150 GCGATTGACTTTTTACTGTCTTTGA 58.573 36.000 0.00 0.00 34.57 2.69
350 352 5.336990 CGCGATTGACTTTTTACTGTCTTTG 59.663 40.000 0.00 0.00 34.57 2.77
351 353 5.440685 CGCGATTGACTTTTTACTGTCTTT 58.559 37.500 0.00 0.00 34.57 2.52
352 354 4.610680 GCGCGATTGACTTTTTACTGTCTT 60.611 41.667 12.10 0.00 34.57 3.01
353 355 3.120649 GCGCGATTGACTTTTTACTGTCT 60.121 43.478 12.10 0.00 34.57 3.41
354 356 3.153735 GCGCGATTGACTTTTTACTGTC 58.846 45.455 12.10 0.00 0.00 3.51
355 357 2.095919 GGCGCGATTGACTTTTTACTGT 60.096 45.455 12.10 0.00 0.00 3.55
356 358 2.159627 AGGCGCGATTGACTTTTTACTG 59.840 45.455 12.10 0.00 0.00 2.74
357 359 2.423577 AGGCGCGATTGACTTTTTACT 58.576 42.857 12.10 0.00 0.00 2.24
358 360 2.894307 AGGCGCGATTGACTTTTTAC 57.106 45.000 12.10 0.00 0.00 2.01
359 361 6.854496 ATATAAGGCGCGATTGACTTTTTA 57.146 33.333 12.10 0.00 0.00 1.52
360 362 5.751243 ATATAAGGCGCGATTGACTTTTT 57.249 34.783 12.10 0.00 0.00 1.94
361 363 5.751243 AATATAAGGCGCGATTGACTTTT 57.249 34.783 12.10 3.43 0.00 2.27
362 364 5.751243 AAATATAAGGCGCGATTGACTTT 57.249 34.783 12.10 0.00 0.00 2.66
363 365 5.505654 CCAAAATATAAGGCGCGATTGACTT 60.506 40.000 12.10 7.96 0.00 3.01
364 366 4.024048 CCAAAATATAAGGCGCGATTGACT 60.024 41.667 12.10 0.00 0.00 3.41
365 367 4.219033 CCAAAATATAAGGCGCGATTGAC 58.781 43.478 12.10 0.00 0.00 3.18
366 368 3.252215 CCCAAAATATAAGGCGCGATTGA 59.748 43.478 12.10 0.00 0.00 2.57
367 369 3.252215 TCCCAAAATATAAGGCGCGATTG 59.748 43.478 12.10 0.00 0.00 2.67
368 370 3.482436 TCCCAAAATATAAGGCGCGATT 58.518 40.909 12.10 6.21 0.00 3.34
369 371 3.134574 TCCCAAAATATAAGGCGCGAT 57.865 42.857 12.10 0.00 0.00 4.58
370 372 2.623878 TCCCAAAATATAAGGCGCGA 57.376 45.000 12.10 0.00 0.00 5.87
371 373 2.031157 CCTTCCCAAAATATAAGGCGCG 60.031 50.000 0.00 0.00 32.66 6.86
372 374 3.219281 TCCTTCCCAAAATATAAGGCGC 58.781 45.455 0.00 0.00 38.70 6.53
373 375 3.821033 CCTCCTTCCCAAAATATAAGGCG 59.179 47.826 0.00 0.00 38.70 5.52
374 376 4.141018 TCCCTCCTTCCCAAAATATAAGGC 60.141 45.833 0.00 0.00 38.70 4.35
375 377 5.134509 ACTCCCTCCTTCCCAAAATATAAGG 59.865 44.000 0.00 0.00 39.93 2.69
376 378 6.267492 ACTCCCTCCTTCCCAAAATATAAG 57.733 41.667 0.00 0.00 0.00 1.73
377 379 7.964730 ATACTCCCTCCTTCCCAAAATATAA 57.035 36.000 0.00 0.00 0.00 0.98
379 381 9.285359 CTATATACTCCCTCCTTCCCAAAATAT 57.715 37.037 0.00 0.00 0.00 1.28
380 382 8.470109 TCTATATACTCCCTCCTTCCCAAAATA 58.530 37.037 0.00 0.00 0.00 1.40
381 383 7.321530 TCTATATACTCCCTCCTTCCCAAAAT 58.678 38.462 0.00 0.00 0.00 1.82
382 384 6.699688 TCTATATACTCCCTCCTTCCCAAAA 58.300 40.000 0.00 0.00 0.00 2.44
383 385 6.303427 TCTATATACTCCCTCCTTCCCAAA 57.697 41.667 0.00 0.00 0.00 3.28
384 386 5.961399 TCTATATACTCCCTCCTTCCCAA 57.039 43.478 0.00 0.00 0.00 4.12
385 387 7.805331 ATATCTATATACTCCCTCCTTCCCA 57.195 40.000 0.00 0.00 0.00 4.37
386 388 8.962205 ACTATATCTATATACTCCCTCCTTCCC 58.038 40.741 0.00 0.00 0.00 3.97
390 392 9.977050 TCTGACTATATCTATATACTCCCTCCT 57.023 37.037 0.00 0.00 0.00 3.69
412 414 8.929487 TCTACATCTACATCTCTACTTCTCTGA 58.071 37.037 0.00 0.00 0.00 3.27
489 504 9.154847 GGCATTTGATCAATAAAACTTAGCTTT 57.845 29.630 9.40 0.00 0.00 3.51
519 534 2.107366 TCCGAGATGCATTCCACACTA 58.893 47.619 0.00 0.00 0.00 2.74
530 545 2.245159 TCAACCATGATCCGAGATGC 57.755 50.000 0.00 0.00 0.00 3.91
539 554 3.436704 CGTGTAGCTTGTTCAACCATGAT 59.563 43.478 0.00 0.00 34.96 2.45
566 583 0.252197 GCATTCGTTAGGTCAGGGGT 59.748 55.000 0.00 0.00 0.00 4.95
567 584 0.251916 TGCATTCGTTAGGTCAGGGG 59.748 55.000 0.00 0.00 0.00 4.79
568 585 2.107950 TTGCATTCGTTAGGTCAGGG 57.892 50.000 0.00 0.00 0.00 4.45
579 596 8.316046 CACAATCTAGCTAAATTTTTGCATTCG 58.684 33.333 16.00 4.14 0.00 3.34
586 603 7.613411 AGAGGCTCACAATCTAGCTAAATTTTT 59.387 33.333 18.26 0.00 38.80 1.94
591 608 5.683876 AAGAGGCTCACAATCTAGCTAAA 57.316 39.130 18.26 0.00 38.80 1.85
636 653 5.064834 GCTGGGTGCTACTAGTAATTTCAAC 59.935 44.000 3.76 2.90 38.95 3.18
637 654 5.183228 GCTGGGTGCTACTAGTAATTTCAA 58.817 41.667 3.76 0.00 38.95 2.69
638 655 4.766375 GCTGGGTGCTACTAGTAATTTCA 58.234 43.478 3.76 0.00 38.95 2.69
656 683 8.044060 TCAAAACAATAGTGAGATTAAGCTGG 57.956 34.615 0.00 0.00 0.00 4.85
657 684 8.939929 TCTCAAAACAATAGTGAGATTAAGCTG 58.060 33.333 0.00 0.00 42.14 4.24
720 747 4.344102 AGCGTCATTTAGTGGGATAAGCTA 59.656 41.667 0.00 0.00 0.00 3.32
722 749 3.467803 AGCGTCATTTAGTGGGATAAGC 58.532 45.455 0.00 0.00 0.00 3.09
723 750 4.989168 GGTAGCGTCATTTAGTGGGATAAG 59.011 45.833 0.00 0.00 0.00 1.73
726 753 2.104281 GGGTAGCGTCATTTAGTGGGAT 59.896 50.000 0.00 0.00 0.00 3.85
729 756 1.474498 GGGGGTAGCGTCATTTAGTGG 60.474 57.143 0.00 0.00 0.00 4.00
730 757 1.485066 AGGGGGTAGCGTCATTTAGTG 59.515 52.381 0.00 0.00 0.00 2.74
731 758 1.485066 CAGGGGGTAGCGTCATTTAGT 59.515 52.381 0.00 0.00 0.00 2.24
732 759 1.810412 GCAGGGGGTAGCGTCATTTAG 60.810 57.143 0.00 0.00 0.00 1.85
733 760 0.179468 GCAGGGGGTAGCGTCATTTA 59.821 55.000 0.00 0.00 0.00 1.40
735 762 1.972660 GAGCAGGGGGTAGCGTCATT 61.973 60.000 0.00 0.00 35.48 2.57
737 764 3.075005 GAGCAGGGGGTAGCGTCA 61.075 66.667 0.00 0.00 35.48 4.35
738 765 2.435693 ATGAGCAGGGGGTAGCGTC 61.436 63.158 0.00 0.00 35.48 5.19
740 767 2.109799 CATGAGCAGGGGGTAGCG 59.890 66.667 0.00 0.00 35.48 4.26
741 768 2.512896 CCATGAGCAGGGGGTAGC 59.487 66.667 0.00 0.00 0.00 3.58
780 808 1.241315 GCGGGCTGGTTTTTAGAGCA 61.241 55.000 0.00 0.00 34.20 4.26
782 810 0.521735 GTGCGGGCTGGTTTTTAGAG 59.478 55.000 0.00 0.00 0.00 2.43
783 811 1.231958 CGTGCGGGCTGGTTTTTAGA 61.232 55.000 0.00 0.00 0.00 2.10
784 812 1.209127 CGTGCGGGCTGGTTTTTAG 59.791 57.895 0.00 0.00 0.00 1.85
850 1101 3.906720 CGGGAGGGAAAGTTTGAGATA 57.093 47.619 0.00 0.00 0.00 1.98
894 1145 2.684735 GGGAGGACGAGAGAGGGT 59.315 66.667 0.00 0.00 0.00 4.34
911 1167 3.508840 GCGCGAGGTTGGAATGGG 61.509 66.667 12.10 0.00 0.00 4.00
1135 1419 1.737793 GAATCGAAATGAAGTGGGCGT 59.262 47.619 0.00 0.00 0.00 5.68
1137 1421 1.064060 CGGAATCGAAATGAAGTGGGC 59.936 52.381 0.00 0.00 39.00 5.36
1152 1445 0.611618 TGGCCAATCAAGCACGGAAT 60.612 50.000 0.61 0.00 0.00 3.01
1162 1455 0.107214 GGACCGAATCTGGCCAATCA 60.107 55.000 7.01 0.00 0.00 2.57
1164 1457 1.153168 CGGACCGAATCTGGCCAAT 60.153 57.895 8.64 0.08 0.00 3.16
1171 1464 0.811915 CAGTGAGACGGACCGAATCT 59.188 55.000 23.38 14.25 0.00 2.40
1209 1502 0.100682 CATCTCGGACCGGTACTGTG 59.899 60.000 16.59 9.59 0.00 3.66
1210 1503 1.035932 CCATCTCGGACCGGTACTGT 61.036 60.000 16.59 0.00 36.56 3.55
1304 1597 0.393077 AGGAAGTGGGAACTCACGTG 59.607 55.000 9.94 9.94 42.10 4.49
1346 1652 0.035439 TCAAGCGAGAAATGTCCCCC 60.035 55.000 0.00 0.00 0.00 5.40
1351 1659 5.297547 TGAACTAAGTCAAGCGAGAAATGT 58.702 37.500 0.00 0.00 0.00 2.71
1361 1669 5.065218 ACAAACAGCACTGAACTAAGTCAAG 59.935 40.000 4.31 0.00 0.00 3.02
1378 1686 6.808212 ACACATTTCAGTTGAAGAACAAACAG 59.192 34.615 0.00 0.00 40.36 3.16
1439 1747 0.826672 AGTCACGACCTTCTTCCCGT 60.827 55.000 0.00 0.00 35.46 5.28
1480 1788 1.031571 GCAATCACTCCGGCATCCAA 61.032 55.000 0.00 0.00 0.00 3.53
1527 1835 7.383102 TCTTAGGTCAGGTAAAGTTAGTACG 57.617 40.000 0.00 0.00 0.00 3.67
1545 1853 8.553459 AACTTATTCAGAACACACATCTTAGG 57.447 34.615 0.00 0.00 0.00 2.69
1590 1898 3.705579 GGGACTAACTAAAGGGTCCTCTC 59.294 52.174 10.21 0.00 45.23 3.20
1591 1899 3.722172 GGGACTAACTAAAGGGTCCTCT 58.278 50.000 10.21 0.00 45.23 3.69
1595 1903 2.827921 TCACGGGACTAACTAAAGGGTC 59.172 50.000 0.00 0.00 0.00 4.46
1613 1921 7.727331 ATCAGCAGAAATAAGATAGCTTCAC 57.273 36.000 0.00 0.00 35.56 3.18
1656 1966 6.178239 ACAATACCTAATCAAGTCAAACGC 57.822 37.500 0.00 0.00 0.00 4.84
1664 1974 8.993121 CACTGGCTTATACAATACCTAATCAAG 58.007 37.037 0.00 0.00 0.00 3.02
1754 2064 1.600957 CATGATGTCTTCACGCCCATC 59.399 52.381 0.00 0.00 37.11 3.51
1797 2107 5.799213 CCTCTAGGCTTGGAGGTATAAATG 58.201 45.833 18.86 0.00 44.70 2.32
1892 2202 8.147058 TCTATCAACTGAAGGAAATCATAGCTC 58.853 37.037 0.00 0.00 0.00 4.09
1929 2239 7.768240 ACAAGGAACTAAAACTTAACAACCAG 58.232 34.615 0.00 0.00 38.49 4.00
1945 2255 6.948309 ACAATAAGCTATCCAAACAAGGAACT 59.052 34.615 0.00 0.00 41.92 3.01
1975 2285 9.476202 AAAACAATTTGCTAGAATCAAAGGTAC 57.524 29.630 0.00 0.00 36.93 3.34
1977 2287 8.962884 AAAAACAATTTGCTAGAATCAAAGGT 57.037 26.923 0.00 0.00 36.93 3.50
2030 2340 9.102757 ACTGATTCAGCAGTTTAAGTGTATATG 57.897 33.333 13.64 0.00 46.42 1.78
2122 2433 3.916035 ACTGCTACAGGTGGATCTATGA 58.084 45.455 0.00 0.00 35.51 2.15
2264 2577 5.648092 ACTAACATAGCTAAAACCTGCCAAG 59.352 40.000 0.00 0.00 0.00 3.61
2824 3199 0.106469 TAGCAAGGTGGTTTGGTGCA 60.106 50.000 0.00 0.00 39.01 4.57
2867 3242 6.620678 CATATAAACCCGATGGCTAAAATGG 58.379 40.000 0.00 0.00 33.59 3.16
2947 3322 9.927668 AAATAAGTGACCAAATTACTGGATTTG 57.072 29.630 3.10 10.14 43.39 2.32
3061 3436 2.290514 ACTTCTGGCAATGCTTCTGCTA 60.291 45.455 4.82 0.00 39.82 3.49
3085 3460 4.446371 CCATTCTGATCCCAGTAACAGAC 58.554 47.826 0.00 0.00 41.16 3.51
3094 3469 2.561187 TGAGTTCCCATTCTGATCCCA 58.439 47.619 0.00 0.00 0.00 4.37
3133 3508 2.236146 AGTAAGACCATGAACGGATGCA 59.764 45.455 0.00 0.00 0.00 3.96
3149 3524 0.539051 CTGCCAGGGGAGACAGTAAG 59.461 60.000 0.00 0.00 35.50 2.34
3168 3543 2.961526 TCCTGCAGTAATCTCGGAAC 57.038 50.000 13.81 0.00 0.00 3.62
3170 3545 2.427453 GTCTTCCTGCAGTAATCTCGGA 59.573 50.000 13.81 0.00 0.00 4.55
3234 3609 1.065199 CAGCTCTAACATCAAGGGGCA 60.065 52.381 0.00 0.00 0.00 5.36
3324 3699 5.716979 TGCTACTGGAGTTAATAGGAGGAT 58.283 41.667 0.00 0.00 0.00 3.24
3351 3726 1.556911 TGTGATCTCCAGGAGCCTTTC 59.443 52.381 12.26 6.59 0.00 2.62
3412 3787 0.109272 TGTTGAGAGTAGAAGCGGCG 60.109 55.000 0.51 0.51 0.00 6.46
3448 3823 5.677567 TGATGTACAAGATGATCAGCACAT 58.322 37.500 14.38 13.46 0.00 3.21
3491 3866 5.106475 TGTTGTGTTTGTTGACTACTGGAAC 60.106 40.000 0.00 0.00 0.00 3.62
3620 3995 3.191791 TGATCGACGTTTCCACTCATACA 59.808 43.478 0.00 0.00 0.00 2.29
3654 4029 2.159043 GCAGCAAGATCAGCTACAGGTA 60.159 50.000 11.70 0.00 41.14 3.08
3811 4186 6.744082 GGTCAACCGAATTTAAATTAGTTCCG 59.256 38.462 18.91 14.89 0.00 4.30
3911 4286 5.850128 CAGCAAGCTCGCTAATTTTATCATC 59.150 40.000 0.00 0.00 41.38 2.92
3974 4349 6.712998 TGAGCAAGTATAGAGTCTGGTCTATC 59.287 42.308 1.86 0.00 39.86 2.08
3989 4364 4.190001 CTGCACTTCATCTGAGCAAGTAT 58.810 43.478 4.26 0.00 34.45 2.12
4002 4377 2.224606 CTGAAGAAAGGCTGCACTTCA 58.775 47.619 21.18 21.18 43.79 3.02
4007 4382 0.892358 CTGGCTGAAGAAAGGCTGCA 60.892 55.000 0.50 0.00 42.98 4.41
4012 4387 2.276732 TTGGACTGGCTGAAGAAAGG 57.723 50.000 0.00 0.00 0.00 3.11
4061 4436 3.356529 AGGACTATTTGCAGTTCCAGG 57.643 47.619 0.00 0.00 0.00 4.45
4099 4474 0.318022 CTGTTGCTGCGTCAAATGCA 60.318 50.000 0.00 0.00 37.87 3.96
4104 4479 1.063912 CAGAAACTGTTGCTGCGTCAA 59.936 47.619 15.27 0.00 0.00 3.18
4155 4530 9.781633 TGTTTACTTTACCATTAGCTTTAGTGA 57.218 29.630 0.00 0.00 0.00 3.41
4158 4533 7.903431 CGCTGTTTACTTTACCATTAGCTTTAG 59.097 37.037 0.00 0.00 0.00 1.85
4183 4558 8.491152 GTCTCCATAAGATTCACAATAACATCG 58.509 37.037 0.00 0.00 36.11 3.84
4203 4578 0.598562 GTCAGACTTCTGCGTCTCCA 59.401 55.000 0.99 0.00 42.10 3.86
4372 4747 0.246635 TAGCACGTTCCTTCTCTGCC 59.753 55.000 0.00 0.00 0.00 4.85
4390 4765 9.435570 ACTTCAGAGTTAATAGAAGGGCTTATA 57.564 33.333 0.00 0.00 41.25 0.98
4443 4818 5.664457 TCGTTGCTACATTCTGATCTTGAT 58.336 37.500 0.00 0.00 0.00 2.57
4464 4839 5.991328 ATTAACCTGTGATGCATTACTCG 57.009 39.130 20.83 13.31 0.00 4.18
4468 4843 6.207221 CCATGCTATTAACCTGTGATGCATTA 59.793 38.462 0.00 0.00 37.74 1.90
4492 4867 1.041437 AGTCCATAGCTACCGCTTCC 58.959 55.000 0.00 0.00 46.47 3.46
4506 4881 1.241165 CTTGTCATGCTGCAAGTCCA 58.759 50.000 6.36 1.10 37.78 4.02
4512 4887 0.111061 AACCTCCTTGTCATGCTGCA 59.889 50.000 4.13 4.13 0.00 4.41
4588 4963 0.036010 GAAGCCTCTTAGCACCAGCA 60.036 55.000 0.00 0.00 45.49 4.41
4632 5007 3.889196 TTTTACAACGTGCAGGTGATC 57.111 42.857 13.63 0.00 40.93 2.92
4637 5012 4.219033 GACTCATTTTTACAACGTGCAGG 58.781 43.478 4.53 4.53 0.00 4.85
4643 5018 6.300354 AGACTTGGACTCATTTTTACAACG 57.700 37.500 0.00 0.00 0.00 4.10
4653 5028 3.521126 ACCATGCTTAGACTTGGACTCAT 59.479 43.478 12.68 0.00 38.06 2.90
4758 5133 6.673978 TCTCAGGATTTCTTCAGGAAAGGATA 59.326 38.462 0.00 0.00 45.61 2.59
4859 5234 6.258230 TGAAATCACATTAGCAAACTCCAG 57.742 37.500 0.00 0.00 0.00 3.86
4916 5291 7.232127 ACCTCTTTGAAATTGATCATCAGTTGT 59.768 33.333 0.00 0.00 0.00 3.32
5011 5386 4.503910 CGGTTGGTTCATCAGTCATCTTA 58.496 43.478 0.00 0.00 0.00 2.10
5018 5393 0.396435 TCAGCGGTTGGTTCATCAGT 59.604 50.000 0.00 0.00 0.00 3.41
5045 5420 4.537135 TCGACTTCAAAGATACTGCCTT 57.463 40.909 0.00 0.00 0.00 4.35
5153 5528 3.067833 GCACTCTGTTCTTTGGTACTCC 58.932 50.000 0.00 0.00 0.00 3.85
5181 5556 5.149977 CAGAAATTTTCCTCTTCGCAACTC 58.850 41.667 5.52 0.00 0.00 3.01
5284 5659 2.039405 GCACTCTGCAGCCCTCTTG 61.039 63.158 9.47 0.44 44.26 3.02
5305 5680 3.395639 CATTGCCTTGTCAGCATTTGTT 58.604 40.909 0.00 0.00 40.59 2.83
5316 5691 1.392589 CTTATCCGCCATTGCCTTGT 58.607 50.000 0.00 0.00 0.00 3.16
5438 5813 3.197549 ACCTTTTTCTTTTTGCTGCTCCA 59.802 39.130 0.00 0.00 0.00 3.86
5458 5833 2.372264 ACATCCATCACATCTGCAACC 58.628 47.619 0.00 0.00 0.00 3.77
5478 5853 5.333581 TCTCCTTCTCATGGTGAGTAGAAA 58.666 41.667 13.15 3.20 42.32 2.52
5486 5861 4.080919 TGGTACATTCTCCTTCTCATGGTG 60.081 45.833 0.00 0.00 0.00 4.17
5748 6123 6.429692 TGTGATACATTTGGAACTTACACAGG 59.570 38.462 0.00 0.00 32.27 4.00
5782 6157 2.309755 AGGCACATCTTTCCCATTCTGA 59.690 45.455 0.00 0.00 0.00 3.27
5920 6301 1.041437 ATACTCTACCCTTCAGGCGC 58.959 55.000 0.00 0.00 40.58 6.53
6039 6420 4.387598 ACAGCTCATATGGCAAGAGATTC 58.612 43.478 16.13 2.43 0.00 2.52
6085 6502 5.580022 AGCCCACAAGAACAAGGTATAAAT 58.420 37.500 0.00 0.00 0.00 1.40
6123 6540 8.366671 ACAAGTGACTATGTACAACTCTTTTC 57.633 34.615 0.00 0.00 0.00 2.29
6130 6547 5.148651 AGGGACAAGTGACTATGTACAAC 57.851 43.478 0.00 0.00 31.72 3.32
6131 6548 5.818678 AAGGGACAAGTGACTATGTACAA 57.181 39.130 0.00 0.00 31.72 2.41
6148 6568 3.556999 TGTCGTGAAATGGAAAAAGGGA 58.443 40.909 0.00 0.00 0.00 4.20
6346 6773 1.076332 GCACCATGTCCAGTACGTTC 58.924 55.000 0.00 0.00 0.00 3.95
6363 6790 1.198094 TCTTCATCCCGTGGAAGGCA 61.198 55.000 0.00 0.00 40.65 4.75
6423 6850 1.472480 ACAAGTGTGTGTCCAAACAGC 59.528 47.619 0.00 0.00 36.31 4.40
6424 6851 3.848272 AACAAGTGTGTGTCCAAACAG 57.152 42.857 0.00 0.00 38.27 3.16
6425 6852 5.650266 AGATAAACAAGTGTGTGTCCAAACA 59.350 36.000 0.00 0.00 38.27 2.83
6426 6853 5.971202 CAGATAAACAAGTGTGTGTCCAAAC 59.029 40.000 0.00 0.00 38.27 2.93
6460 6887 4.582656 ACTGCAGCATTACAAAGTTACCAA 59.417 37.500 15.27 0.00 0.00 3.67
6464 6892 7.921786 ATAGAACTGCAGCATTACAAAGTTA 57.078 32.000 15.27 0.00 0.00 2.24
6501 6929 5.803020 AGAAAATGAAAGGCGTATCAGAC 57.197 39.130 0.00 0.00 0.00 3.51
6509 6937 5.154222 GTCCTGTTTAGAAAATGAAAGGCG 58.846 41.667 0.00 0.00 0.00 5.52
6524 6952 1.299541 CGCTTCAGTGTGTCCTGTTT 58.700 50.000 0.00 0.00 34.02 2.83
6547 6975 2.438434 CCATCACCGGCCTTCACC 60.438 66.667 0.00 0.00 0.00 4.02
6624 7052 2.348104 ACGCCTGCTGATACGACCA 61.348 57.895 0.00 0.00 0.00 4.02
6658 7086 0.544357 TCACGAACTCCTGGACCCAT 60.544 55.000 0.00 0.00 0.00 4.00
7059 7493 1.002792 GAGGTGGTTTCGCTTTCACAC 60.003 52.381 0.00 0.00 32.29 3.82
7153 7593 3.428534 CCTCGCCAAAAATAAAACAGCAC 59.571 43.478 0.00 0.00 0.00 4.40
7181 7623 3.489180 AGTAGTAGTAACACAGCAGCG 57.511 47.619 0.00 0.00 0.00 5.18
7201 7643 9.206690 ACGGGCAGTCTACTAGTATATATAGTA 57.793 37.037 2.33 7.03 35.20 1.82
7202 7644 7.986320 CACGGGCAGTCTACTAGTATATATAGT 59.014 40.741 2.33 5.43 37.29 2.12
7203 7645 7.041916 GCACGGGCAGTCTACTAGTATATATAG 60.042 44.444 3.77 0.00 40.72 1.31
7205 7647 5.589452 GCACGGGCAGTCTACTAGTATATAT 59.411 44.000 3.77 0.00 40.72 0.86
7206 7648 4.940046 GCACGGGCAGTCTACTAGTATATA 59.060 45.833 3.77 0.00 40.72 0.86
7207 7649 3.757493 GCACGGGCAGTCTACTAGTATAT 59.243 47.826 3.77 0.00 40.72 0.86
7208 7650 3.144506 GCACGGGCAGTCTACTAGTATA 58.855 50.000 3.77 0.00 40.72 1.47
7209 7651 1.955080 GCACGGGCAGTCTACTAGTAT 59.045 52.381 3.77 0.00 40.72 2.12
7290 7732 1.048601 GTTCTGGATCTATGGCGGGA 58.951 55.000 0.00 0.00 0.00 5.14
7420 7862 2.296190 CTCGGATGATCAACGGTATGGA 59.704 50.000 19.03 2.73 0.00 3.41
7859 8301 2.584418 CAGCGATGCTCACGGGAG 60.584 66.667 11.30 11.30 44.33 4.30
7871 8313 1.202582 GAGTCTTTGGAGTAGCAGCGA 59.797 52.381 0.00 0.00 0.00 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.