Multiple sequence alignment - TraesCS2B01G109700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G109700 chr2B 100.000 3314 0 0 1 3314 71245413 71242100 0.000000e+00 6120.0
1 TraesCS2B01G109700 chr2B 89.749 1551 100 22 1470 2969 70837292 70838834 0.000000e+00 1929.0
2 TraesCS2B01G109700 chr2B 89.803 1422 109 26 846 2239 71293967 71292554 0.000000e+00 1790.0
3 TraesCS2B01G109700 chr2B 89.049 1461 112 26 875 2311 520970258 520968822 0.000000e+00 1768.0
4 TraesCS2B01G109700 chr2B 83.841 1312 137 54 949 2229 75990422 75991689 0.000000e+00 1179.0
5 TraesCS2B01G109700 chr2B 91.871 529 28 7 883 1400 70821607 70822131 0.000000e+00 725.0
6 TraesCS2B01G109700 chr2B 85.235 596 42 18 2753 3314 520968196 520967613 3.710000e-159 571.0
7 TraesCS2B01G109700 chr2B 96.460 339 11 1 198 535 692455815 692455477 2.890000e-155 558.0
8 TraesCS2B01G109700 chr2B 95.614 342 14 1 195 535 223728478 223728819 6.250000e-152 547.0
9 TraesCS2B01G109700 chr2B 91.104 326 13 9 2989 3314 70839055 70839364 8.500000e-116 427.0
10 TraesCS2B01G109700 chr2B 90.517 232 19 2 563 794 520970812 520970584 1.490000e-78 303.0
11 TraesCS2B01G109700 chr2B 87.361 269 20 8 560 827 71294289 71294034 2.500000e-76 296.0
12 TraesCS2B01G109700 chr2B 87.624 202 13 5 1 195 71294499 71294303 1.200000e-54 224.0
13 TraesCS2B01G109700 chr2B 86.224 196 11 9 1 195 520971009 520970829 7.250000e-47 198.0
14 TraesCS2B01G109700 chr2D 89.406 1718 122 32 885 2554 44339524 44341229 0.000000e+00 2109.0
15 TraesCS2B01G109700 chr2D 90.304 1248 91 19 1021 2252 44470248 44469015 0.000000e+00 1607.0
16 TraesCS2B01G109700 chr2D 85.891 1375 139 41 886 2228 48028530 48027179 0.000000e+00 1413.0
17 TraesCS2B01G109700 chr2D 89.005 191 6 6 5 195 44371143 44371318 4.300000e-54 222.0
18 TraesCS2B01G109700 chr2D 81.579 228 15 9 2334 2534 44468719 44468492 2.650000e-36 163.0
19 TraesCS2B01G109700 chr2D 76.038 313 38 23 2989 3282 44468148 44467854 9.650000e-26 128.0
20 TraesCS2B01G109700 chr2A 87.959 1744 127 48 871 2550 48249710 48251434 0.000000e+00 1980.0
21 TraesCS2B01G109700 chr2A 88.957 1639 122 35 846 2441 48347743 48346121 0.000000e+00 1969.0
22 TraesCS2B01G109700 chr2A 83.795 1407 160 40 882 2228 51040620 51042018 0.000000e+00 1273.0
23 TraesCS2B01G109700 chr2A 94.309 492 27 1 1464 1955 48246378 48246868 0.000000e+00 752.0
24 TraesCS2B01G109700 chr2A 91.156 441 33 5 962 1397 48224211 48224650 7.920000e-166 593.0
25 TraesCS2B01G109700 chr2A 78.017 464 46 32 2838 3261 48251796 48252243 1.190000e-59 241.0
26 TraesCS2B01G109700 chr2A 82.584 178 22 5 1 170 48249227 48249403 7.410000e-32 148.0
27 TraesCS2B01G109700 chr2A 86.957 115 7 4 560 669 48348593 48348482 4.490000e-24 122.0
28 TraesCS2B01G109700 chr3A 95.751 353 14 1 198 549 468166211 468165859 4.800000e-158 568.0
29 TraesCS2B01G109700 chr1B 95.751 353 13 2 193 543 619093551 619093199 4.800000e-158 568.0
30 TraesCS2B01G109700 chr3B 95.989 349 13 1 195 542 678449810 678450158 1.730000e-157 566.0
31 TraesCS2B01G109700 chr3B 95.989 349 13 1 195 542 817574683 817575031 1.730000e-157 566.0
32 TraesCS2B01G109700 chr3B 90.000 100 8 2 2586 2684 752000072 752000170 9.650000e-26 128.0
33 TraesCS2B01G109700 chr3B 85.849 106 13 2 2575 2680 6047836 6047733 9.720000e-21 111.0
34 TraesCS2B01G109700 chr3B 88.095 84 10 0 2585 2668 49746811 49746894 2.100000e-17 100.0
35 TraesCS2B01G109700 chr7A 95.702 349 13 2 194 541 704628872 704628525 8.030000e-156 560.0
36 TraesCS2B01G109700 chr7A 90.361 83 8 0 2585 2667 558744862 558744944 3.500000e-20 110.0
37 TraesCS2B01G109700 chr7A 83.168 101 16 1 2580 2679 645464657 645464557 1.270000e-14 91.6
38 TraesCS2B01G109700 chr5B 95.198 354 13 4 190 541 197183454 197183805 1.040000e-154 556.0
39 TraesCS2B01G109700 chr5B 92.754 69 5 0 2601 2669 251919107 251919039 2.100000e-17 100.0
40 TraesCS2B01G109700 chr4A 95.415 349 14 2 194 541 724618857 724618510 3.740000e-154 555.0
41 TraesCS2B01G109700 chr5A 85.149 101 15 0 2584 2684 412512215 412512115 1.630000e-18 104.0
42 TraesCS2B01G109700 chr1A 84.848 99 14 1 2586 2683 541388995 541388897 7.570000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G109700 chr2B 71242100 71245413 3313 True 6120.000000 6120 100.000000 1 3314 1 chr2B.!!$R1 3313
1 TraesCS2B01G109700 chr2B 75990422 75991689 1267 False 1179.000000 1179 83.841000 949 2229 1 chr2B.!!$F2 1280
2 TraesCS2B01G109700 chr2B 70837292 70839364 2072 False 1178.000000 1929 90.426500 1470 3314 2 chr2B.!!$F4 1844
3 TraesCS2B01G109700 chr2B 71292554 71294499 1945 True 770.000000 1790 88.262667 1 2239 3 chr2B.!!$R3 2238
4 TraesCS2B01G109700 chr2B 70821607 70822131 524 False 725.000000 725 91.871000 883 1400 1 chr2B.!!$F1 517
5 TraesCS2B01G109700 chr2B 520967613 520971009 3396 True 710.000000 1768 87.756250 1 3314 4 chr2B.!!$R4 3313
6 TraesCS2B01G109700 chr2D 44339524 44341229 1705 False 2109.000000 2109 89.406000 885 2554 1 chr2D.!!$F1 1669
7 TraesCS2B01G109700 chr2D 48027179 48028530 1351 True 1413.000000 1413 85.891000 886 2228 1 chr2D.!!$R1 1342
8 TraesCS2B01G109700 chr2D 44467854 44470248 2394 True 632.666667 1607 82.640333 1021 3282 3 chr2D.!!$R2 2261
9 TraesCS2B01G109700 chr2A 51040620 51042018 1398 False 1273.000000 1273 83.795000 882 2228 1 chr2A.!!$F2 1346
10 TraesCS2B01G109700 chr2A 48346121 48348593 2472 True 1045.500000 1969 87.957000 560 2441 2 chr2A.!!$R1 1881
11 TraesCS2B01G109700 chr2A 48246378 48252243 5865 False 780.250000 1980 85.717250 1 3261 4 chr2A.!!$F3 3260

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
338 3235 0.033109 CCTCCAAACCCTCCAATCCC 60.033 60.0 0.00 0.0 0.00 3.85 F
824 4473 0.036732 GTGGTGCCACAGATCAAGGA 59.963 55.0 15.81 0.0 45.53 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1492 5352 0.539986 ATGTCCGCGTCCAGGTAAAT 59.460 50.0 4.92 0.0 0.00 1.40 R
2758 7307 0.531657 CATTTTGGATGAGCGGCCAA 59.468 50.0 2.24 0.0 42.11 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 2876 2.162681 AGGAAGGCGTGGAAAGAAATG 58.837 47.619 0.00 0.00 0.00 2.32
29 2878 0.240945 AAGGCGTGGAAAGAAATGCG 59.759 50.000 0.00 0.00 0.00 4.73
30 2879 0.889186 AGGCGTGGAAAGAAATGCGT 60.889 50.000 0.00 0.00 0.00 5.24
78 2930 2.094130 GGCGGTTGAAGTAGCTAGACTT 60.094 50.000 1.40 1.40 42.42 3.01
79 2931 2.924290 GCGGTTGAAGTAGCTAGACTTG 59.076 50.000 6.61 0.00 39.79 3.16
80 2932 2.924290 CGGTTGAAGTAGCTAGACTTGC 59.076 50.000 6.61 0.11 39.79 4.01
83 2935 1.476891 TGAAGTAGCTAGACTTGCCCG 59.523 52.381 6.61 0.00 39.79 6.13
117 2973 4.895668 TTGGTAAAACCGACATACCTCT 57.104 40.909 0.00 0.00 42.58 3.69
181 3077 6.501781 CCGATATTATACGGGTTGGATAGAC 58.498 44.000 0.00 0.00 44.59 2.59
195 3092 7.444183 GGGTTGGATAGACAAATCGATTGATTA 59.556 37.037 12.25 3.18 44.02 1.75
196 3093 9.003658 GGTTGGATAGACAAATCGATTGATTAT 57.996 33.333 12.25 7.75 44.02 1.28
197 3094 9.817365 GTTGGATAGACAAATCGATTGATTATG 57.183 33.333 12.25 8.29 44.02 1.90
198 3095 9.777297 TTGGATAGACAAATCGATTGATTATGA 57.223 29.630 12.25 0.00 44.02 2.15
199 3096 9.428097 TGGATAGACAAATCGATTGATTATGAG 57.572 33.333 12.25 2.92 44.02 2.90
200 3097 8.877779 GGATAGACAAATCGATTGATTATGAGG 58.122 37.037 12.25 0.38 44.02 3.86
201 3098 8.783833 ATAGACAAATCGATTGATTATGAGGG 57.216 34.615 12.25 0.00 44.02 4.30
202 3099 6.595682 AGACAAATCGATTGATTATGAGGGT 58.404 36.000 12.25 1.70 44.02 4.34
203 3100 6.484643 AGACAAATCGATTGATTATGAGGGTG 59.515 38.462 12.25 4.04 44.02 4.61
204 3101 5.009010 ACAAATCGATTGATTATGAGGGTGC 59.991 40.000 12.25 0.00 44.02 5.01
205 3102 4.630644 ATCGATTGATTATGAGGGTGCT 57.369 40.909 0.00 0.00 0.00 4.40
206 3103 4.422073 TCGATTGATTATGAGGGTGCTT 57.578 40.909 0.00 0.00 0.00 3.91
207 3104 4.129380 TCGATTGATTATGAGGGTGCTTG 58.871 43.478 0.00 0.00 0.00 4.01
208 3105 4.129380 CGATTGATTATGAGGGTGCTTGA 58.871 43.478 0.00 0.00 0.00 3.02
209 3106 4.576053 CGATTGATTATGAGGGTGCTTGAA 59.424 41.667 0.00 0.00 0.00 2.69
210 3107 5.240183 CGATTGATTATGAGGGTGCTTGAAT 59.760 40.000 0.00 0.00 0.00 2.57
211 3108 6.427853 CGATTGATTATGAGGGTGCTTGAATA 59.572 38.462 0.00 0.00 0.00 1.75
212 3109 6.942532 TTGATTATGAGGGTGCTTGAATAC 57.057 37.500 0.00 0.00 0.00 1.89
213 3110 5.056480 TGATTATGAGGGTGCTTGAATACG 58.944 41.667 0.00 0.00 0.00 3.06
214 3111 4.481368 TTATGAGGGTGCTTGAATACGT 57.519 40.909 0.00 0.00 0.00 3.57
215 3112 2.851263 TGAGGGTGCTTGAATACGTT 57.149 45.000 0.00 0.00 0.00 3.99
216 3113 3.134574 TGAGGGTGCTTGAATACGTTT 57.865 42.857 0.00 0.00 0.00 3.60
217 3114 3.482436 TGAGGGTGCTTGAATACGTTTT 58.518 40.909 0.00 0.00 0.00 2.43
218 3115 4.643463 TGAGGGTGCTTGAATACGTTTTA 58.357 39.130 0.00 0.00 0.00 1.52
219 3116 4.693566 TGAGGGTGCTTGAATACGTTTTAG 59.306 41.667 0.00 0.00 0.00 1.85
220 3117 4.648651 AGGGTGCTTGAATACGTTTTAGT 58.351 39.130 0.00 0.00 0.00 2.24
221 3118 4.694037 AGGGTGCTTGAATACGTTTTAGTC 59.306 41.667 0.00 0.00 0.00 2.59
222 3119 4.142752 GGGTGCTTGAATACGTTTTAGTCC 60.143 45.833 0.00 0.00 0.00 3.85
223 3120 4.142752 GGTGCTTGAATACGTTTTAGTCCC 60.143 45.833 0.00 0.00 0.00 4.46
224 3121 4.453136 GTGCTTGAATACGTTTTAGTCCCA 59.547 41.667 0.00 0.00 0.00 4.37
225 3122 5.123344 GTGCTTGAATACGTTTTAGTCCCAT 59.877 40.000 0.00 0.00 0.00 4.00
226 3123 5.123186 TGCTTGAATACGTTTTAGTCCCATG 59.877 40.000 0.00 0.00 0.00 3.66
227 3124 5.353123 GCTTGAATACGTTTTAGTCCCATGA 59.647 40.000 0.00 0.00 0.00 3.07
228 3125 6.038271 GCTTGAATACGTTTTAGTCCCATGAT 59.962 38.462 0.00 0.00 0.00 2.45
229 3126 7.415206 GCTTGAATACGTTTTAGTCCCATGATT 60.415 37.037 0.00 0.00 0.00 2.57
230 3127 9.104965 CTTGAATACGTTTTAGTCCCATGATTA 57.895 33.333 0.00 0.00 0.00 1.75
231 3128 9.451002 TTGAATACGTTTTAGTCCCATGATTAA 57.549 29.630 0.00 0.00 0.00 1.40
232 3129 9.451002 TGAATACGTTTTAGTCCCATGATTAAA 57.549 29.630 0.00 0.00 32.69 1.52
235 3132 7.754851 ACGTTTTAGTCCCATGATTAAAAGT 57.245 32.000 0.00 0.00 40.88 2.66
236 3133 8.851541 ACGTTTTAGTCCCATGATTAAAAGTA 57.148 30.769 0.00 0.00 40.88 2.24
237 3134 8.943002 ACGTTTTAGTCCCATGATTAAAAGTAG 58.057 33.333 0.00 2.96 40.88 2.57
238 3135 8.943002 CGTTTTAGTCCCATGATTAAAAGTAGT 58.057 33.333 0.00 0.00 40.88 2.73
240 3137 8.801882 TTTAGTCCCATGATTAAAAGTAGTGG 57.198 34.615 0.00 0.00 31.91 4.00
241 3138 5.755849 AGTCCCATGATTAAAAGTAGTGGG 58.244 41.667 0.00 1.11 44.84 4.61
243 3140 5.751586 TCCCATGATTAAAAGTAGTGGGAC 58.248 41.667 6.15 0.00 46.51 4.46
244 3141 5.491078 TCCCATGATTAAAAGTAGTGGGACT 59.509 40.000 6.15 0.00 46.51 3.85
245 3142 6.674861 TCCCATGATTAAAAGTAGTGGGACTA 59.325 38.462 6.15 0.00 46.51 2.59
246 3143 7.183112 TCCCATGATTAAAAGTAGTGGGACTAA 59.817 37.037 6.15 0.00 46.51 2.24
247 3144 7.832187 CCCATGATTAAAAGTAGTGGGACTAAA 59.168 37.037 1.30 0.00 46.05 1.85
248 3145 9.238368 CCATGATTAAAAGTAGTGGGACTAAAA 57.762 33.333 0.00 0.00 31.62 1.52
251 3148 9.856162 TGATTAAAAGTAGTGGGACTAAAACTT 57.144 29.630 0.00 0.00 31.62 2.66
253 3150 6.387041 AAAAGTAGTGGGACTAAAACTTGC 57.613 37.500 0.00 0.00 31.62 4.01
254 3151 4.976540 AGTAGTGGGACTAAAACTTGCT 57.023 40.909 0.00 0.00 31.62 3.91
255 3152 6.429521 AAGTAGTGGGACTAAAACTTGCTA 57.570 37.500 0.00 0.00 31.62 3.49
256 3153 6.038997 AGTAGTGGGACTAAAACTTGCTAG 57.961 41.667 0.00 0.00 31.62 3.42
257 3154 3.676093 AGTGGGACTAAAACTTGCTAGC 58.324 45.455 8.10 8.10 0.00 3.42
258 3155 2.747989 GTGGGACTAAAACTTGCTAGCC 59.252 50.000 13.29 0.00 0.00 3.93
259 3156 2.642807 TGGGACTAAAACTTGCTAGCCT 59.357 45.455 13.29 0.00 0.00 4.58
260 3157 3.271729 GGGACTAAAACTTGCTAGCCTC 58.728 50.000 13.29 0.00 0.00 4.70
261 3158 3.307480 GGGACTAAAACTTGCTAGCCTCA 60.307 47.826 13.29 0.00 0.00 3.86
262 3159 3.685272 GGACTAAAACTTGCTAGCCTCAC 59.315 47.826 13.29 0.00 0.00 3.51
263 3160 3.676093 ACTAAAACTTGCTAGCCTCACC 58.324 45.455 13.29 0.00 0.00 4.02
264 3161 1.911057 AAAACTTGCTAGCCTCACCC 58.089 50.000 13.29 0.00 0.00 4.61
265 3162 0.771127 AAACTTGCTAGCCTCACCCA 59.229 50.000 13.29 0.00 0.00 4.51
266 3163 0.995024 AACTTGCTAGCCTCACCCAT 59.005 50.000 13.29 0.00 0.00 4.00
267 3164 0.254178 ACTTGCTAGCCTCACCCATG 59.746 55.000 13.29 0.00 0.00 3.66
268 3165 1.077501 TTGCTAGCCTCACCCATGC 60.078 57.895 13.29 0.00 0.00 4.06
269 3166 1.565390 TTGCTAGCCTCACCCATGCT 61.565 55.000 13.29 0.00 39.10 3.79
270 3167 1.225704 GCTAGCCTCACCCATGCTT 59.774 57.895 2.29 0.00 36.57 3.91
271 3168 1.099879 GCTAGCCTCACCCATGCTTG 61.100 60.000 2.29 0.00 36.57 4.01
272 3169 0.465097 CTAGCCTCACCCATGCTTGG 60.465 60.000 11.68 11.68 43.23 3.61
273 3170 0.913934 TAGCCTCACCCATGCTTGGA 60.914 55.000 19.85 0.00 46.92 3.53
274 3171 1.076485 GCCTCACCCATGCTTGGAT 60.076 57.895 19.85 0.00 46.92 3.41
275 3172 0.183492 GCCTCACCCATGCTTGGATA 59.817 55.000 19.85 4.10 46.92 2.59
276 3173 1.972872 CCTCACCCATGCTTGGATAC 58.027 55.000 19.85 0.00 46.92 2.24
277 3174 1.212688 CCTCACCCATGCTTGGATACA 59.787 52.381 19.85 0.49 46.92 2.29
323 3220 9.507329 TGAGTTAATGAGCATTTATTATCCTCC 57.493 33.333 0.52 0.00 32.50 4.30
324 3221 9.507329 GAGTTAATGAGCATTTATTATCCTCCA 57.493 33.333 0.52 0.00 32.50 3.86
325 3222 9.866655 AGTTAATGAGCATTTATTATCCTCCAA 57.133 29.630 0.52 0.00 32.50 3.53
328 3225 6.959639 TGAGCATTTATTATCCTCCAAACC 57.040 37.500 0.00 0.00 0.00 3.27
329 3226 5.833131 TGAGCATTTATTATCCTCCAAACCC 59.167 40.000 0.00 0.00 0.00 4.11
330 3227 6.030727 AGCATTTATTATCCTCCAAACCCT 57.969 37.500 0.00 0.00 0.00 4.34
331 3228 6.071320 AGCATTTATTATCCTCCAAACCCTC 58.929 40.000 0.00 0.00 0.00 4.30
332 3229 5.243954 GCATTTATTATCCTCCAAACCCTCC 59.756 44.000 0.00 0.00 0.00 4.30
333 3230 6.372931 CATTTATTATCCTCCAAACCCTCCA 58.627 40.000 0.00 0.00 0.00 3.86
334 3231 6.410222 TTTATTATCCTCCAAACCCTCCAA 57.590 37.500 0.00 0.00 0.00 3.53
335 3232 6.606241 TTATTATCCTCCAAACCCTCCAAT 57.394 37.500 0.00 0.00 0.00 3.16
336 3233 4.519906 TTATCCTCCAAACCCTCCAATC 57.480 45.455 0.00 0.00 0.00 2.67
337 3234 0.999712 TCCTCCAAACCCTCCAATCC 59.000 55.000 0.00 0.00 0.00 3.01
338 3235 0.033109 CCTCCAAACCCTCCAATCCC 60.033 60.000 0.00 0.00 0.00 3.85
339 3236 0.394352 CTCCAAACCCTCCAATCCCG 60.394 60.000 0.00 0.00 0.00 5.14
340 3237 0.842905 TCCAAACCCTCCAATCCCGA 60.843 55.000 0.00 0.00 0.00 5.14
341 3238 0.039035 CCAAACCCTCCAATCCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
342 3239 1.173913 CAAACCCTCCAATCCCGAAC 58.826 55.000 0.00 0.00 0.00 3.95
343 3240 1.073098 AAACCCTCCAATCCCGAACT 58.927 50.000 0.00 0.00 0.00 3.01
344 3241 0.618981 AACCCTCCAATCCCGAACTC 59.381 55.000 0.00 0.00 0.00 3.01
345 3242 0.546747 ACCCTCCAATCCCGAACTCA 60.547 55.000 0.00 0.00 0.00 3.41
346 3243 0.107654 CCCTCCAATCCCGAACTCAC 60.108 60.000 0.00 0.00 0.00 3.51
347 3244 0.613260 CCTCCAATCCCGAACTCACA 59.387 55.000 0.00 0.00 0.00 3.58
348 3245 1.210478 CCTCCAATCCCGAACTCACAT 59.790 52.381 0.00 0.00 0.00 3.21
349 3246 2.283298 CTCCAATCCCGAACTCACATG 58.717 52.381 0.00 0.00 0.00 3.21
350 3247 1.628340 TCCAATCCCGAACTCACATGT 59.372 47.619 0.00 0.00 0.00 3.21
351 3248 1.739466 CCAATCCCGAACTCACATGTG 59.261 52.381 20.18 20.18 0.00 3.21
352 3249 2.426522 CAATCCCGAACTCACATGTGT 58.573 47.619 24.63 6.43 0.00 3.72
353 3250 2.813754 CAATCCCGAACTCACATGTGTT 59.186 45.455 24.63 13.25 34.84 3.32
354 3251 3.973206 ATCCCGAACTCACATGTGTTA 57.027 42.857 24.63 6.40 32.63 2.41
355 3252 3.755112 TCCCGAACTCACATGTGTTAA 57.245 42.857 24.63 5.64 32.63 2.01
356 3253 4.074627 TCCCGAACTCACATGTGTTAAA 57.925 40.909 24.63 5.26 32.63 1.52
357 3254 4.062293 TCCCGAACTCACATGTGTTAAAG 58.938 43.478 24.63 16.79 32.63 1.85
358 3255 3.188460 CCCGAACTCACATGTGTTAAAGG 59.812 47.826 24.63 20.93 32.63 3.11
359 3256 4.062293 CCGAACTCACATGTGTTAAAGGA 58.938 43.478 24.63 3.38 32.63 3.36
360 3257 4.152402 CCGAACTCACATGTGTTAAAGGAG 59.848 45.833 24.63 15.07 32.63 3.69
361 3258 4.988540 CGAACTCACATGTGTTAAAGGAGA 59.011 41.667 24.63 1.89 32.63 3.71
362 3259 5.119279 CGAACTCACATGTGTTAAAGGAGAG 59.881 44.000 24.63 13.70 32.63 3.20
363 3260 4.899502 ACTCACATGTGTTAAAGGAGAGG 58.100 43.478 24.63 0.00 0.00 3.69
364 3261 4.593206 ACTCACATGTGTTAAAGGAGAGGA 59.407 41.667 24.63 0.42 0.00 3.71
365 3262 5.152623 TCACATGTGTTAAAGGAGAGGAG 57.847 43.478 24.63 0.00 0.00 3.69
366 3263 4.593206 TCACATGTGTTAAAGGAGAGGAGT 59.407 41.667 24.63 0.00 0.00 3.85
367 3264 5.071788 TCACATGTGTTAAAGGAGAGGAGTT 59.928 40.000 24.63 0.00 0.00 3.01
368 3265 6.269077 TCACATGTGTTAAAGGAGAGGAGTTA 59.731 38.462 24.63 0.00 0.00 2.24
369 3266 6.934645 CACATGTGTTAAAGGAGAGGAGTTAA 59.065 38.462 18.03 0.00 0.00 2.01
370 3267 7.444183 CACATGTGTTAAAGGAGAGGAGTTAAA 59.556 37.037 18.03 0.00 0.00 1.52
371 3268 8.164070 ACATGTGTTAAAGGAGAGGAGTTAAAT 58.836 33.333 0.00 0.00 0.00 1.40
372 3269 7.979444 TGTGTTAAAGGAGAGGAGTTAAATG 57.021 36.000 0.00 0.00 0.00 2.32
373 3270 7.741785 TGTGTTAAAGGAGAGGAGTTAAATGA 58.258 34.615 0.00 0.00 0.00 2.57
374 3271 7.878127 TGTGTTAAAGGAGAGGAGTTAAATGAG 59.122 37.037 0.00 0.00 0.00 2.90
375 3272 7.334671 GTGTTAAAGGAGAGGAGTTAAATGAGG 59.665 40.741 0.00 0.00 0.00 3.86
376 3273 7.236847 TGTTAAAGGAGAGGAGTTAAATGAGGA 59.763 37.037 0.00 0.00 0.00 3.71
377 3274 5.948742 AAGGAGAGGAGTTAAATGAGGAG 57.051 43.478 0.00 0.00 0.00 3.69
378 3275 5.213868 AGGAGAGGAGTTAAATGAGGAGA 57.786 43.478 0.00 0.00 0.00 3.71
379 3276 5.594777 AGGAGAGGAGTTAAATGAGGAGAA 58.405 41.667 0.00 0.00 0.00 2.87
380 3277 6.026186 AGGAGAGGAGTTAAATGAGGAGAAA 58.974 40.000 0.00 0.00 0.00 2.52
381 3278 6.156083 AGGAGAGGAGTTAAATGAGGAGAAAG 59.844 42.308 0.00 0.00 0.00 2.62
382 3279 6.155393 GGAGAGGAGTTAAATGAGGAGAAAGA 59.845 42.308 0.00 0.00 0.00 2.52
383 3280 7.181569 AGAGGAGTTAAATGAGGAGAAAGAG 57.818 40.000 0.00 0.00 0.00 2.85
384 3281 6.957020 AGAGGAGTTAAATGAGGAGAAAGAGA 59.043 38.462 0.00 0.00 0.00 3.10
385 3282 7.456269 AGAGGAGTTAAATGAGGAGAAAGAGAA 59.544 37.037 0.00 0.00 0.00 2.87
386 3283 7.390823 AGGAGTTAAATGAGGAGAAAGAGAAC 58.609 38.462 0.00 0.00 0.00 3.01
387 3284 7.236640 AGGAGTTAAATGAGGAGAAAGAGAACT 59.763 37.037 0.00 0.00 0.00 3.01
388 3285 8.532819 GGAGTTAAATGAGGAGAAAGAGAACTA 58.467 37.037 0.00 0.00 0.00 2.24
389 3286 9.930693 GAGTTAAATGAGGAGAAAGAGAACTAA 57.069 33.333 0.00 0.00 0.00 2.24
392 3289 9.892130 TTAAATGAGGAGAAAGAGAACTAATCC 57.108 33.333 0.00 0.00 0.00 3.01
393 3290 7.502060 AATGAGGAGAAAGAGAACTAATCCA 57.498 36.000 0.00 0.00 0.00 3.41
394 3291 6.287589 TGAGGAGAAAGAGAACTAATCCAC 57.712 41.667 0.00 0.00 0.00 4.02
395 3292 5.780282 TGAGGAGAAAGAGAACTAATCCACA 59.220 40.000 0.00 0.00 0.00 4.17
396 3293 6.441924 TGAGGAGAAAGAGAACTAATCCACAT 59.558 38.462 0.00 0.00 0.00 3.21
397 3294 7.038017 TGAGGAGAAAGAGAACTAATCCACATT 60.038 37.037 0.00 0.00 0.00 2.71
398 3295 7.694093 AGGAGAAAGAGAACTAATCCACATTT 58.306 34.615 0.00 0.00 0.00 2.32
399 3296 8.166726 AGGAGAAAGAGAACTAATCCACATTTT 58.833 33.333 0.00 0.00 0.00 1.82
400 3297 9.449719 GGAGAAAGAGAACTAATCCACATTTTA 57.550 33.333 0.00 0.00 0.00 1.52
405 3302 9.892130 AAGAGAACTAATCCACATTTTAGTAGG 57.108 33.333 0.00 0.00 37.60 3.18
406 3303 8.487028 AGAGAACTAATCCACATTTTAGTAGGG 58.513 37.037 0.00 0.00 37.60 3.53
407 3304 8.159229 AGAACTAATCCACATTTTAGTAGGGT 57.841 34.615 0.00 0.00 37.60 4.34
408 3305 8.612145 AGAACTAATCCACATTTTAGTAGGGTT 58.388 33.333 0.00 0.00 37.60 4.11
409 3306 8.803397 AACTAATCCACATTTTAGTAGGGTTC 57.197 34.615 0.00 0.00 37.60 3.62
410 3307 7.344134 ACTAATCCACATTTTAGTAGGGTTCC 58.656 38.462 0.00 0.00 36.99 3.62
411 3308 4.579647 TCCACATTTTAGTAGGGTTCCC 57.420 45.455 0.00 0.00 0.00 3.97
412 3309 3.267551 TCCACATTTTAGTAGGGTTCCCC 59.732 47.826 4.02 0.00 45.90 4.81
426 3323 5.818678 GGGTTCCCCTGACTAAAATTTTT 57.181 39.130 9.06 0.00 41.34 1.94
451 3348 5.494632 GTCTCAAGACTAGTTCTAGCCTC 57.505 47.826 0.00 0.00 41.65 4.70
452 3349 5.190677 GTCTCAAGACTAGTTCTAGCCTCT 58.809 45.833 0.00 1.52 41.65 3.69
453 3350 5.296035 GTCTCAAGACTAGTTCTAGCCTCTC 59.704 48.000 0.00 0.00 41.65 3.20
454 3351 5.190925 TCTCAAGACTAGTTCTAGCCTCTCT 59.809 44.000 0.00 0.60 32.51 3.10
455 3352 5.822204 TCAAGACTAGTTCTAGCCTCTCTT 58.178 41.667 0.00 5.91 32.51 2.85
456 3353 6.249951 TCAAGACTAGTTCTAGCCTCTCTTT 58.750 40.000 0.00 0.00 32.51 2.52
457 3354 7.403671 TCAAGACTAGTTCTAGCCTCTCTTTA 58.596 38.462 0.00 0.00 32.51 1.85
458 3355 7.554835 TCAAGACTAGTTCTAGCCTCTCTTTAG 59.445 40.741 0.00 0.34 32.51 1.85
459 3356 6.965607 AGACTAGTTCTAGCCTCTCTTTAGT 58.034 40.000 0.00 0.00 30.17 2.24
460 3357 7.052248 AGACTAGTTCTAGCCTCTCTTTAGTC 58.948 42.308 0.00 0.00 36.42 2.59
461 3358 6.723339 ACTAGTTCTAGCCTCTCTTTAGTCA 58.277 40.000 6.75 0.00 0.00 3.41
462 3359 6.826741 ACTAGTTCTAGCCTCTCTTTAGTCAG 59.173 42.308 6.75 0.00 0.00 3.51
463 3360 4.953579 AGTTCTAGCCTCTCTTTAGTCAGG 59.046 45.833 0.00 0.00 0.00 3.86
464 3361 3.904717 TCTAGCCTCTCTTTAGTCAGGG 58.095 50.000 0.00 0.00 0.00 4.45
465 3362 2.930109 AGCCTCTCTTTAGTCAGGGA 57.070 50.000 0.00 0.00 0.00 4.20
466 3363 3.413105 AGCCTCTCTTTAGTCAGGGAT 57.587 47.619 0.00 0.00 0.00 3.85
467 3364 3.037549 AGCCTCTCTTTAGTCAGGGATG 58.962 50.000 0.00 0.00 0.00 3.51
468 3365 3.034635 GCCTCTCTTTAGTCAGGGATGA 58.965 50.000 0.00 0.00 0.00 2.92
469 3366 3.645687 GCCTCTCTTTAGTCAGGGATGAT 59.354 47.826 0.00 0.00 0.00 2.45
470 3367 4.102367 GCCTCTCTTTAGTCAGGGATGATT 59.898 45.833 0.00 0.00 0.00 2.57
471 3368 5.609423 CCTCTCTTTAGTCAGGGATGATTG 58.391 45.833 0.00 0.00 0.00 2.67
472 3369 5.454471 CCTCTCTTTAGTCAGGGATGATTGG 60.454 48.000 0.00 0.00 0.00 3.16
473 3370 5.280499 TCTCTTTAGTCAGGGATGATTGGA 58.720 41.667 0.00 0.00 0.00 3.53
474 3371 5.726308 TCTCTTTAGTCAGGGATGATTGGAA 59.274 40.000 0.00 0.00 0.00 3.53
475 3372 5.745227 TCTTTAGTCAGGGATGATTGGAAC 58.255 41.667 0.00 0.00 0.00 3.62
476 3373 5.488919 TCTTTAGTCAGGGATGATTGGAACT 59.511 40.000 0.00 0.00 0.00 3.01
477 3374 5.779241 TTAGTCAGGGATGATTGGAACTT 57.221 39.130 0.00 0.00 0.00 2.66
478 3375 4.664688 AGTCAGGGATGATTGGAACTTT 57.335 40.909 0.00 0.00 0.00 2.66
479 3376 5.779241 AGTCAGGGATGATTGGAACTTTA 57.221 39.130 0.00 0.00 0.00 1.85
480 3377 5.749462 AGTCAGGGATGATTGGAACTTTAG 58.251 41.667 0.00 0.00 0.00 1.85
481 3378 4.336713 GTCAGGGATGATTGGAACTTTAGC 59.663 45.833 0.00 0.00 0.00 3.09
482 3379 3.633986 CAGGGATGATTGGAACTTTAGCC 59.366 47.826 0.00 0.00 0.00 3.93
483 3380 3.529319 AGGGATGATTGGAACTTTAGCCT 59.471 43.478 0.00 0.00 0.00 4.58
484 3381 3.885901 GGGATGATTGGAACTTTAGCCTC 59.114 47.826 0.00 0.00 0.00 4.70
485 3382 4.385754 GGGATGATTGGAACTTTAGCCTCT 60.386 45.833 0.00 0.00 0.00 3.69
486 3383 5.163195 GGGATGATTGGAACTTTAGCCTCTA 60.163 44.000 0.00 0.00 0.00 2.43
487 3384 6.357367 GGATGATTGGAACTTTAGCCTCTAA 58.643 40.000 0.00 0.00 0.00 2.10
488 3385 6.828785 GGATGATTGGAACTTTAGCCTCTAAA 59.171 38.462 0.00 0.00 0.00 1.85
489 3386 7.339466 GGATGATTGGAACTTTAGCCTCTAAAA 59.661 37.037 1.38 0.00 0.00 1.52
490 3387 8.650143 ATGATTGGAACTTTAGCCTCTAAAAA 57.350 30.769 1.38 0.00 0.00 1.94
529 3426 9.449719 TCAGACTAAAAATAGTTCCTTGAATCC 57.550 33.333 0.00 0.00 0.00 3.01
530 3427 9.231297 CAGACTAAAAATAGTTCCTTGAATCCA 57.769 33.333 0.00 0.00 0.00 3.41
531 3428 9.807921 AGACTAAAAATAGTTCCTTGAATCCAA 57.192 29.630 0.00 0.00 0.00 3.53
533 3430 8.523658 ACTAAAAATAGTTCCTTGAATCCAAGC 58.476 33.333 0.00 0.00 46.42 4.01
534 3431 6.916360 AAAATAGTTCCTTGAATCCAAGCA 57.084 33.333 0.00 0.00 46.42 3.91
535 3432 5.904362 AATAGTTCCTTGAATCCAAGCAC 57.096 39.130 0.00 0.00 46.42 4.40
536 3433 2.154462 AGTTCCTTGAATCCAAGCACG 58.846 47.619 0.00 0.00 46.42 5.34
537 3434 1.200020 GTTCCTTGAATCCAAGCACGG 59.800 52.381 0.00 0.00 46.42 4.94
538 3435 0.960364 TCCTTGAATCCAAGCACGGC 60.960 55.000 0.00 0.00 46.42 5.68
539 3436 1.508088 CTTGAATCCAAGCACGGCC 59.492 57.895 0.00 0.00 42.72 6.13
540 3437 0.962356 CTTGAATCCAAGCACGGCCT 60.962 55.000 0.00 0.00 42.72 5.19
554 3451 1.233019 CGGCCTATCTCTTGCCAATG 58.767 55.000 0.00 0.00 45.63 2.82
555 3452 1.475751 CGGCCTATCTCTTGCCAATGT 60.476 52.381 0.00 0.00 45.63 2.71
556 3453 1.952296 GGCCTATCTCTTGCCAATGTG 59.048 52.381 0.00 0.00 44.70 3.21
557 3454 1.952296 GCCTATCTCTTGCCAATGTGG 59.048 52.381 0.00 0.00 41.55 4.17
558 3455 2.421952 GCCTATCTCTTGCCAATGTGGA 60.422 50.000 0.00 0.00 40.96 4.02
633 3541 1.254570 GTTGACGAATCATACGCGGTC 59.745 52.381 12.47 5.96 33.85 4.79
635 3543 1.266786 GACGAATCATACGCGGTCGG 61.267 60.000 12.47 0.00 40.69 4.79
643 3551 1.389609 ATACGCGGTCGGAATGGTCT 61.390 55.000 12.47 0.00 40.69 3.85
702 3780 7.165460 TGTCATCCTTAATTAAGTCGTCAGA 57.835 36.000 20.99 11.80 0.00 3.27
824 4473 0.036732 GTGGTGCCACAGATCAAGGA 59.963 55.000 15.81 0.00 45.53 3.36
827 4476 0.807496 GTGCCACAGATCAAGGAAGC 59.193 55.000 0.00 0.00 0.00 3.86
828 4477 0.674581 TGCCACAGATCAAGGAAGCG 60.675 55.000 0.00 0.00 0.00 4.68
829 4478 0.391661 GCCACAGATCAAGGAAGCGA 60.392 55.000 0.00 0.00 0.00 4.93
830 4479 1.945819 GCCACAGATCAAGGAAGCGAA 60.946 52.381 0.00 0.00 0.00 4.70
831 4480 2.426522 CCACAGATCAAGGAAGCGAAA 58.573 47.619 0.00 0.00 0.00 3.46
834 4483 3.686241 CACAGATCAAGGAAGCGAAATGA 59.314 43.478 0.00 0.00 0.00 2.57
835 4484 3.686726 ACAGATCAAGGAAGCGAAATGAC 59.313 43.478 0.00 0.00 0.00 3.06
836 4485 3.937706 CAGATCAAGGAAGCGAAATGACT 59.062 43.478 0.00 0.00 0.00 3.41
837 4486 4.033817 CAGATCAAGGAAGCGAAATGACTC 59.966 45.833 0.00 0.00 0.00 3.36
841 4598 3.140325 AGGAAGCGAAATGACTCCAAA 57.860 42.857 0.00 0.00 0.00 3.28
843 4600 3.888930 AGGAAGCGAAATGACTCCAAAAA 59.111 39.130 0.00 0.00 0.00 1.94
976 4771 2.039879 CCCGTTGCCTATATAAAGCCCT 59.960 50.000 2.78 0.00 0.00 5.19
1016 4831 0.098552 TCAAACACAAGCACGCACAG 59.901 50.000 0.00 0.00 0.00 3.66
1019 4834 1.024271 AACACAAGCACGCACAGATT 58.976 45.000 0.00 0.00 0.00 2.40
1055 4877 4.684214 CGAACCCATCTCATCCATTCTTCA 60.684 45.833 0.00 0.00 0.00 3.02
1057 4879 4.789807 ACCCATCTCATCCATTCTTCAAG 58.210 43.478 0.00 0.00 0.00 3.02
1063 4886 4.165565 TCTCATCCATTCTTCAAGGCAGAT 59.834 41.667 0.00 0.00 0.00 2.90
1181 5004 1.218316 CTACTGGAAGGGCGTGGTC 59.782 63.158 0.00 0.00 39.30 4.02
1278 5101 3.630013 ACCGCCAGAAGCTGCTCA 61.630 61.111 1.00 0.00 40.39 4.26
1403 5235 0.739561 GGGAGGTACGTACAGCTCTG 59.260 60.000 26.02 0.00 41.70 3.35
1428 5275 5.917462 TCTTCTTGCATCTTGGATCGATTA 58.083 37.500 0.00 0.00 0.00 1.75
1445 5300 7.116948 GGATCGATTAATGTTGATCTTGACGAT 59.883 37.037 15.88 0.00 38.52 3.73
1611 5471 2.532715 ACATGGAGCCACACCCCT 60.533 61.111 0.00 0.00 0.00 4.79
1626 5486 0.753262 CCCCTCAGTACAAGATCGGG 59.247 60.000 0.00 0.98 0.00 5.14
1719 5579 2.975799 AACGCCGGCATGTTCGTT 60.976 55.556 28.98 18.07 39.87 3.85
1869 5729 2.034879 CAACCTCGTGCTCGCCATT 61.035 57.895 2.69 0.00 36.96 3.16
2048 5957 4.446413 CGTGGAGGTACACCGGCC 62.446 72.222 0.00 0.00 43.90 6.13
2064 5973 2.043652 CCAGGAGGCCAACATGGG 60.044 66.667 20.77 5.02 38.19 4.00
2388 6880 3.460103 AGTCCGCGTTTCTTGTTTTAGA 58.540 40.909 4.92 0.00 0.00 2.10
2558 7107 2.418628 CGTATGAGTTTTTGCGGGTCAT 59.581 45.455 0.00 0.00 0.00 3.06
2576 7125 0.810031 ATGACGCACCCGATTAGCAC 60.810 55.000 0.00 0.00 38.29 4.40
2578 7127 3.261951 CGCACCCGATTAGCACCG 61.262 66.667 0.00 0.00 36.29 4.94
2581 7130 1.022451 GCACCCGATTAGCACCGAAA 61.022 55.000 0.00 0.00 0.00 3.46
2582 7131 1.444836 CACCCGATTAGCACCGAAAA 58.555 50.000 0.00 0.00 0.00 2.29
2587 7136 3.063045 CCCGATTAGCACCGAAAAAGTAC 59.937 47.826 0.00 0.00 0.00 2.73
2594 7143 2.289506 GCACCGAAAAAGTACTCCCTCT 60.290 50.000 0.00 0.00 0.00 3.69
2598 7147 3.258622 CCGAAAAAGTACTCCCTCTGTCT 59.741 47.826 0.00 0.00 0.00 3.41
2607 7156 7.176589 AGTACTCCCTCTGTCTCAAAATAAG 57.823 40.000 0.00 0.00 0.00 1.73
2609 7158 5.799213 ACTCCCTCTGTCTCAAAATAAGTG 58.201 41.667 0.00 0.00 0.00 3.16
2615 7164 7.878127 CCCTCTGTCTCAAAATAAGTGTCTTAA 59.122 37.037 0.00 0.00 0.00 1.85
2722 7271 5.815581 TGATACAAAGGGAGTAGCATTTGT 58.184 37.500 0.00 0.00 45.22 2.83
2758 7307 0.548510 GGTAGCCAGAGCCAAATCCT 59.451 55.000 0.00 0.00 41.25 3.24
2821 7371 0.683179 TGTCCTCATCGTGTCGGGAT 60.683 55.000 0.00 0.00 0.00 3.85
2822 7372 0.460311 GTCCTCATCGTGTCGGGATT 59.540 55.000 0.00 0.00 0.00 3.01
2823 7373 1.134788 GTCCTCATCGTGTCGGGATTT 60.135 52.381 0.00 0.00 0.00 2.17
2855 7593 2.260869 CCTTGCACCTTGTCCACGG 61.261 63.158 0.00 0.00 0.00 4.94
2858 7596 4.947147 GCACCTTGTCCACGGCCA 62.947 66.667 2.24 0.00 0.00 5.36
2873 7611 2.911143 CCATAACAGCTCGGCCCT 59.089 61.111 0.00 0.00 0.00 5.19
3013 7983 2.173669 GTCGTGATCGCCCACATGG 61.174 63.158 0.00 0.00 36.89 3.66
3025 7996 2.978156 CCACATGGGGCAAGGTATAT 57.022 50.000 0.00 0.00 0.00 0.86
3026 7997 3.243359 CCACATGGGGCAAGGTATATT 57.757 47.619 0.00 0.00 0.00 1.28
3069 8043 4.279169 CACCTTATCCGGAATAAGACGGTA 59.721 45.833 23.91 3.97 46.73 4.02
3112 8086 4.217754 TGCTATTCGTTCAAAGCGTTTT 57.782 36.364 0.00 0.00 37.80 2.43
3183 8184 2.503375 CGTGTACGTCGTCCTGCC 60.503 66.667 0.00 0.00 34.11 4.85
3269 8275 0.744874 TAGCAAGCTAGGTAGGCACG 59.255 55.000 17.50 0.00 0.00 5.34
3274 8280 0.467659 AGCTAGGTAGGCACGGTAGG 60.468 60.000 0.00 0.00 0.00 3.18
3297 8303 4.789075 GCGAGCGTGCCGGTTCTA 62.789 66.667 1.90 0.00 37.83 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 2876 2.285154 CGTCCCGTGAAATCTACGC 58.715 57.895 0.00 0.00 40.04 4.42
29 2878 0.997196 GTGCGTCCCGTGAAATCTAC 59.003 55.000 0.00 0.00 0.00 2.59
30 2879 0.108520 GGTGCGTCCCGTGAAATCTA 60.109 55.000 0.00 0.00 0.00 1.98
78 2930 0.106419 AAAGGTGAAAACTCCGGGCA 60.106 50.000 0.00 0.00 0.00 5.36
79 2931 0.313987 CAAAGGTGAAAACTCCGGGC 59.686 55.000 0.00 0.00 0.00 6.13
80 2932 0.958822 CCAAAGGTGAAAACTCCGGG 59.041 55.000 0.00 0.00 0.00 5.73
83 2935 5.353938 GGTTTTACCAAAGGTGAAAACTCC 58.646 41.667 12.57 5.40 42.92 3.85
159 3055 9.886132 ATTTGTCTATCCAACCCGTATAATATC 57.114 33.333 0.00 0.00 0.00 1.63
167 3063 2.498481 TCGATTTGTCTATCCAACCCGT 59.502 45.455 0.00 0.00 0.00 5.28
171 3067 9.817365 CATAATCAATCGATTTGTCTATCCAAC 57.183 33.333 8.21 0.00 42.06 3.77
181 3077 5.240183 AGCACCCTCATAATCAATCGATTTG 59.760 40.000 8.21 4.10 42.06 2.32
195 3092 3.350219 AACGTATTCAAGCACCCTCAT 57.650 42.857 0.00 0.00 0.00 2.90
196 3093 2.851263 AACGTATTCAAGCACCCTCA 57.149 45.000 0.00 0.00 0.00 3.86
197 3094 4.694037 ACTAAAACGTATTCAAGCACCCTC 59.306 41.667 0.00 0.00 0.00 4.30
198 3095 4.648651 ACTAAAACGTATTCAAGCACCCT 58.351 39.130 0.00 0.00 0.00 4.34
199 3096 4.142752 GGACTAAAACGTATTCAAGCACCC 60.143 45.833 0.00 0.00 0.00 4.61
200 3097 4.142752 GGGACTAAAACGTATTCAAGCACC 60.143 45.833 0.00 0.00 0.00 5.01
201 3098 4.453136 TGGGACTAAAACGTATTCAAGCAC 59.547 41.667 0.00 0.00 0.00 4.40
202 3099 4.643463 TGGGACTAAAACGTATTCAAGCA 58.357 39.130 0.00 0.00 0.00 3.91
203 3100 5.353123 TCATGGGACTAAAACGTATTCAAGC 59.647 40.000 0.00 0.00 0.00 4.01
204 3101 6.978343 TCATGGGACTAAAACGTATTCAAG 57.022 37.500 0.00 0.00 0.00 3.02
205 3102 7.931578 AATCATGGGACTAAAACGTATTCAA 57.068 32.000 0.00 0.00 0.00 2.69
206 3103 9.451002 TTTAATCATGGGACTAAAACGTATTCA 57.549 29.630 0.00 0.00 0.00 2.57
209 3106 9.457436 ACTTTTAATCATGGGACTAAAACGTAT 57.543 29.630 0.00 0.00 31.79 3.06
210 3107 8.851541 ACTTTTAATCATGGGACTAAAACGTA 57.148 30.769 0.00 0.00 31.79 3.57
211 3108 7.754851 ACTTTTAATCATGGGACTAAAACGT 57.245 32.000 0.00 0.00 31.79 3.99
212 3109 8.943002 ACTACTTTTAATCATGGGACTAAAACG 58.057 33.333 0.00 0.00 31.79 3.60
214 3111 9.238368 CCACTACTTTTAATCATGGGACTAAAA 57.762 33.333 0.00 0.00 33.67 1.52
215 3112 8.801882 CCACTACTTTTAATCATGGGACTAAA 57.198 34.615 0.00 0.00 0.00 1.85
221 3118 5.755849 AGTCCCACTACTTTTAATCATGGG 58.244 41.667 0.00 0.00 45.69 4.00
222 3119 8.801882 TTTAGTCCCACTACTTTTAATCATGG 57.198 34.615 0.00 0.00 28.93 3.66
225 3122 9.856162 AAGTTTTAGTCCCACTACTTTTAATCA 57.144 29.630 0.00 0.00 28.93 2.57
227 3124 8.573885 GCAAGTTTTAGTCCCACTACTTTTAAT 58.426 33.333 0.00 0.00 28.93 1.40
228 3125 7.776500 AGCAAGTTTTAGTCCCACTACTTTTAA 59.224 33.333 0.00 0.00 28.93 1.52
229 3126 7.284820 AGCAAGTTTTAGTCCCACTACTTTTA 58.715 34.615 0.00 0.00 28.93 1.52
230 3127 6.127101 AGCAAGTTTTAGTCCCACTACTTTT 58.873 36.000 0.00 0.00 28.93 2.27
231 3128 5.691896 AGCAAGTTTTAGTCCCACTACTTT 58.308 37.500 0.00 0.00 28.93 2.66
232 3129 5.306114 AGCAAGTTTTAGTCCCACTACTT 57.694 39.130 0.00 0.00 28.93 2.24
233 3130 4.976540 AGCAAGTTTTAGTCCCACTACT 57.023 40.909 0.00 0.00 28.93 2.57
234 3131 4.630505 GCTAGCAAGTTTTAGTCCCACTAC 59.369 45.833 10.63 0.00 28.93 2.73
235 3132 4.323257 GGCTAGCAAGTTTTAGTCCCACTA 60.323 45.833 18.24 0.00 0.00 2.74
236 3133 3.559384 GGCTAGCAAGTTTTAGTCCCACT 60.559 47.826 18.24 0.00 0.00 4.00
237 3134 2.747989 GGCTAGCAAGTTTTAGTCCCAC 59.252 50.000 18.24 0.00 0.00 4.61
238 3135 2.642807 AGGCTAGCAAGTTTTAGTCCCA 59.357 45.455 18.24 0.00 0.00 4.37
239 3136 3.271729 GAGGCTAGCAAGTTTTAGTCCC 58.728 50.000 18.24 0.00 0.00 4.46
240 3137 3.685272 GTGAGGCTAGCAAGTTTTAGTCC 59.315 47.826 18.24 0.00 0.00 3.85
241 3138 3.685272 GGTGAGGCTAGCAAGTTTTAGTC 59.315 47.826 18.24 0.00 0.00 2.59
242 3139 3.559384 GGGTGAGGCTAGCAAGTTTTAGT 60.559 47.826 18.24 0.00 0.00 2.24
243 3140 3.010420 GGGTGAGGCTAGCAAGTTTTAG 58.990 50.000 18.24 0.00 0.00 1.85
244 3141 2.373836 TGGGTGAGGCTAGCAAGTTTTA 59.626 45.455 18.24 0.00 0.00 1.52
245 3142 1.144913 TGGGTGAGGCTAGCAAGTTTT 59.855 47.619 18.24 0.00 0.00 2.43
246 3143 0.771127 TGGGTGAGGCTAGCAAGTTT 59.229 50.000 18.24 0.00 0.00 2.66
247 3144 0.995024 ATGGGTGAGGCTAGCAAGTT 59.005 50.000 18.24 0.00 0.00 2.66
248 3145 0.254178 CATGGGTGAGGCTAGCAAGT 59.746 55.000 18.24 0.00 0.00 3.16
249 3146 1.099879 GCATGGGTGAGGCTAGCAAG 61.100 60.000 18.24 0.00 0.00 4.01
250 3147 1.077501 GCATGGGTGAGGCTAGCAA 60.078 57.895 18.24 0.00 0.00 3.91
251 3148 1.565390 AAGCATGGGTGAGGCTAGCA 61.565 55.000 18.24 0.00 42.15 3.49
252 3149 1.099879 CAAGCATGGGTGAGGCTAGC 61.100 60.000 6.04 6.04 42.15 3.42
253 3150 0.465097 CCAAGCATGGGTGAGGCTAG 60.465 60.000 0.00 0.00 42.15 3.42
254 3151 0.913934 TCCAAGCATGGGTGAGGCTA 60.914 55.000 8.36 0.00 42.15 3.93
255 3152 1.578215 ATCCAAGCATGGGTGAGGCT 61.578 55.000 8.36 0.00 45.93 4.58
297 3194 9.507329 GGAGGATAATAAATGCTCATTAACTCA 57.493 33.333 8.48 0.00 38.10 3.41
298 3195 9.507329 TGGAGGATAATAAATGCTCATTAACTC 57.493 33.333 8.48 0.00 38.10 3.01
299 3196 9.866655 TTGGAGGATAATAAATGCTCATTAACT 57.133 29.630 8.48 0.00 38.10 2.24
302 3199 9.077885 GGTTTGGAGGATAATAAATGCTCATTA 57.922 33.333 8.48 0.00 38.10 1.90
303 3200 7.015584 GGGTTTGGAGGATAATAAATGCTCATT 59.984 37.037 8.48 0.00 38.10 2.57
304 3201 6.494835 GGGTTTGGAGGATAATAAATGCTCAT 59.505 38.462 8.48 0.00 38.10 2.90
305 3202 5.833131 GGGTTTGGAGGATAATAAATGCTCA 59.167 40.000 8.48 0.00 38.10 4.26
306 3203 6.071320 AGGGTTTGGAGGATAATAAATGCTC 58.929 40.000 0.00 0.00 36.02 4.26
307 3204 6.030727 AGGGTTTGGAGGATAATAAATGCT 57.969 37.500 0.00 0.00 0.00 3.79
308 3205 5.243954 GGAGGGTTTGGAGGATAATAAATGC 59.756 44.000 0.00 0.00 0.00 3.56
309 3206 6.372931 TGGAGGGTTTGGAGGATAATAAATG 58.627 40.000 0.00 0.00 0.00 2.32
310 3207 6.606241 TGGAGGGTTTGGAGGATAATAAAT 57.394 37.500 0.00 0.00 0.00 1.40
311 3208 6.410222 TTGGAGGGTTTGGAGGATAATAAA 57.590 37.500 0.00 0.00 0.00 1.40
312 3209 6.411554 GGATTGGAGGGTTTGGAGGATAATAA 60.412 42.308 0.00 0.00 0.00 1.40
313 3210 5.074515 GGATTGGAGGGTTTGGAGGATAATA 59.925 44.000 0.00 0.00 0.00 0.98
314 3211 4.140924 GGATTGGAGGGTTTGGAGGATAAT 60.141 45.833 0.00 0.00 0.00 1.28
315 3212 3.204382 GGATTGGAGGGTTTGGAGGATAA 59.796 47.826 0.00 0.00 0.00 1.75
316 3213 2.783510 GGATTGGAGGGTTTGGAGGATA 59.216 50.000 0.00 0.00 0.00 2.59
317 3214 1.570979 GGATTGGAGGGTTTGGAGGAT 59.429 52.381 0.00 0.00 0.00 3.24
318 3215 0.999712 GGATTGGAGGGTTTGGAGGA 59.000 55.000 0.00 0.00 0.00 3.71
319 3216 0.033109 GGGATTGGAGGGTTTGGAGG 60.033 60.000 0.00 0.00 0.00 4.30
320 3217 0.394352 CGGGATTGGAGGGTTTGGAG 60.394 60.000 0.00 0.00 0.00 3.86
321 3218 0.842905 TCGGGATTGGAGGGTTTGGA 60.843 55.000 0.00 0.00 0.00 3.53
322 3219 0.039035 TTCGGGATTGGAGGGTTTGG 59.961 55.000 0.00 0.00 0.00 3.28
323 3220 1.173913 GTTCGGGATTGGAGGGTTTG 58.826 55.000 0.00 0.00 0.00 2.93
324 3221 1.004394 GAGTTCGGGATTGGAGGGTTT 59.996 52.381 0.00 0.00 0.00 3.27
325 3222 0.618981 GAGTTCGGGATTGGAGGGTT 59.381 55.000 0.00 0.00 0.00 4.11
326 3223 0.546747 TGAGTTCGGGATTGGAGGGT 60.547 55.000 0.00 0.00 0.00 4.34
327 3224 0.107654 GTGAGTTCGGGATTGGAGGG 60.108 60.000 0.00 0.00 0.00 4.30
328 3225 0.613260 TGTGAGTTCGGGATTGGAGG 59.387 55.000 0.00 0.00 0.00 4.30
329 3226 2.283298 CATGTGAGTTCGGGATTGGAG 58.717 52.381 0.00 0.00 0.00 3.86
330 3227 1.628340 ACATGTGAGTTCGGGATTGGA 59.372 47.619 0.00 0.00 0.00 3.53
331 3228 1.739466 CACATGTGAGTTCGGGATTGG 59.261 52.381 21.64 0.00 0.00 3.16
332 3229 2.426522 ACACATGTGAGTTCGGGATTG 58.573 47.619 31.94 0.96 0.00 2.67
333 3230 2.859165 ACACATGTGAGTTCGGGATT 57.141 45.000 31.94 2.44 0.00 3.01
334 3231 2.859165 AACACATGTGAGTTCGGGAT 57.141 45.000 31.94 3.24 0.00 3.85
335 3232 3.755112 TTAACACATGTGAGTTCGGGA 57.245 42.857 31.94 6.14 31.57 5.14
336 3233 3.188460 CCTTTAACACATGTGAGTTCGGG 59.812 47.826 31.94 19.74 31.57 5.14
337 3234 4.062293 TCCTTTAACACATGTGAGTTCGG 58.938 43.478 31.94 22.70 31.57 4.30
338 3235 4.988540 TCTCCTTTAACACATGTGAGTTCG 59.011 41.667 31.94 15.64 31.57 3.95
339 3236 5.409826 CCTCTCCTTTAACACATGTGAGTTC 59.590 44.000 31.94 0.00 31.57 3.01
340 3237 5.071788 TCCTCTCCTTTAACACATGTGAGTT 59.928 40.000 31.94 18.54 33.59 3.01
341 3238 4.593206 TCCTCTCCTTTAACACATGTGAGT 59.407 41.667 31.94 20.17 0.00 3.41
342 3239 5.152623 TCCTCTCCTTTAACACATGTGAG 57.847 43.478 31.94 17.84 0.00 3.51
343 3240 4.593206 ACTCCTCTCCTTTAACACATGTGA 59.407 41.667 31.94 8.09 0.00 3.58
344 3241 4.899502 ACTCCTCTCCTTTAACACATGTG 58.100 43.478 24.25 24.25 0.00 3.21
345 3242 5.568620 AACTCCTCTCCTTTAACACATGT 57.431 39.130 0.00 0.00 0.00 3.21
346 3243 7.979444 TTTAACTCCTCTCCTTTAACACATG 57.021 36.000 0.00 0.00 0.00 3.21
347 3244 8.383175 TCATTTAACTCCTCTCCTTTAACACAT 58.617 33.333 0.00 0.00 0.00 3.21
348 3245 7.741785 TCATTTAACTCCTCTCCTTTAACACA 58.258 34.615 0.00 0.00 0.00 3.72
349 3246 7.334671 CCTCATTTAACTCCTCTCCTTTAACAC 59.665 40.741 0.00 0.00 0.00 3.32
350 3247 7.236847 TCCTCATTTAACTCCTCTCCTTTAACA 59.763 37.037 0.00 0.00 0.00 2.41
351 3248 7.621796 TCCTCATTTAACTCCTCTCCTTTAAC 58.378 38.462 0.00 0.00 0.00 2.01
352 3249 7.678598 TCTCCTCATTTAACTCCTCTCCTTTAA 59.321 37.037 0.00 0.00 0.00 1.52
353 3250 7.189794 TCTCCTCATTTAACTCCTCTCCTTTA 58.810 38.462 0.00 0.00 0.00 1.85
354 3251 6.026186 TCTCCTCATTTAACTCCTCTCCTTT 58.974 40.000 0.00 0.00 0.00 3.11
355 3252 5.594777 TCTCCTCATTTAACTCCTCTCCTT 58.405 41.667 0.00 0.00 0.00 3.36
356 3253 5.213868 TCTCCTCATTTAACTCCTCTCCT 57.786 43.478 0.00 0.00 0.00 3.69
357 3254 5.941555 TTCTCCTCATTTAACTCCTCTCC 57.058 43.478 0.00 0.00 0.00 3.71
358 3255 7.123547 TCTCTTTCTCCTCATTTAACTCCTCTC 59.876 40.741 0.00 0.00 0.00 3.20
359 3256 6.957020 TCTCTTTCTCCTCATTTAACTCCTCT 59.043 38.462 0.00 0.00 0.00 3.69
360 3257 7.176589 TCTCTTTCTCCTCATTTAACTCCTC 57.823 40.000 0.00 0.00 0.00 3.71
361 3258 7.236640 AGTTCTCTTTCTCCTCATTTAACTCCT 59.763 37.037 0.00 0.00 0.00 3.69
362 3259 7.390823 AGTTCTCTTTCTCCTCATTTAACTCC 58.609 38.462 0.00 0.00 0.00 3.85
363 3260 9.930693 TTAGTTCTCTTTCTCCTCATTTAACTC 57.069 33.333 0.00 0.00 0.00 3.01
366 3263 9.892130 GGATTAGTTCTCTTTCTCCTCATTTAA 57.108 33.333 0.00 0.00 0.00 1.52
367 3264 9.046846 TGGATTAGTTCTCTTTCTCCTCATTTA 57.953 33.333 0.00 0.00 0.00 1.40
368 3265 7.826744 GTGGATTAGTTCTCTTTCTCCTCATTT 59.173 37.037 0.00 0.00 0.00 2.32
369 3266 7.038017 TGTGGATTAGTTCTCTTTCTCCTCATT 60.038 37.037 0.00 0.00 0.00 2.57
370 3267 6.441924 TGTGGATTAGTTCTCTTTCTCCTCAT 59.558 38.462 0.00 0.00 0.00 2.90
371 3268 5.780282 TGTGGATTAGTTCTCTTTCTCCTCA 59.220 40.000 0.00 0.00 0.00 3.86
372 3269 6.287589 TGTGGATTAGTTCTCTTTCTCCTC 57.712 41.667 0.00 0.00 0.00 3.71
373 3270 6.882768 ATGTGGATTAGTTCTCTTTCTCCT 57.117 37.500 0.00 0.00 0.00 3.69
374 3271 7.929941 AAATGTGGATTAGTTCTCTTTCTCC 57.070 36.000 0.00 0.00 0.00 3.71
379 3276 9.892130 CCTACTAAAATGTGGATTAGTTCTCTT 57.108 33.333 3.79 0.00 41.35 2.85
380 3277 8.487028 CCCTACTAAAATGTGGATTAGTTCTCT 58.513 37.037 3.79 0.00 41.35 3.10
381 3278 8.265764 ACCCTACTAAAATGTGGATTAGTTCTC 58.734 37.037 3.79 0.00 41.35 2.87
382 3279 8.159229 ACCCTACTAAAATGTGGATTAGTTCT 57.841 34.615 3.79 0.00 41.35 3.01
383 3280 8.803397 AACCCTACTAAAATGTGGATTAGTTC 57.197 34.615 3.79 0.00 41.35 3.01
384 3281 7.832685 GGAACCCTACTAAAATGTGGATTAGTT 59.167 37.037 3.79 0.00 41.35 2.24
385 3282 7.344134 GGAACCCTACTAAAATGTGGATTAGT 58.656 38.462 3.93 3.93 43.05 2.24
386 3283 7.803279 GGAACCCTACTAAAATGTGGATTAG 57.197 40.000 0.00 0.00 35.67 1.73
436 3333 6.824704 TGACTAAAGAGAGGCTAGAACTAGTC 59.175 42.308 14.17 14.17 38.03 2.59
437 3334 6.723339 TGACTAAAGAGAGGCTAGAACTAGT 58.277 40.000 10.03 0.00 35.65 2.57
438 3335 6.262273 CCTGACTAAAGAGAGGCTAGAACTAG 59.738 46.154 0.00 4.67 36.29 2.57
439 3336 6.123651 CCTGACTAAAGAGAGGCTAGAACTA 58.876 44.000 0.00 0.00 0.00 2.24
440 3337 4.953579 CCTGACTAAAGAGAGGCTAGAACT 59.046 45.833 0.00 0.00 0.00 3.01
441 3338 4.098807 CCCTGACTAAAGAGAGGCTAGAAC 59.901 50.000 0.00 0.00 0.00 3.01
442 3339 4.017407 TCCCTGACTAAAGAGAGGCTAGAA 60.017 45.833 0.00 0.00 0.00 2.10
443 3340 3.528078 TCCCTGACTAAAGAGAGGCTAGA 59.472 47.826 0.00 0.00 0.00 2.43
444 3341 3.904717 TCCCTGACTAAAGAGAGGCTAG 58.095 50.000 0.00 0.00 0.00 3.42
445 3342 4.079154 TCATCCCTGACTAAAGAGAGGCTA 60.079 45.833 0.00 0.00 0.00 3.93
446 3343 2.930109 TCCCTGACTAAAGAGAGGCT 57.070 50.000 0.00 0.00 0.00 4.58
447 3344 3.034635 TCATCCCTGACTAAAGAGAGGC 58.965 50.000 0.00 0.00 0.00 4.70
448 3345 5.454471 CCAATCATCCCTGACTAAAGAGAGG 60.454 48.000 0.00 0.00 33.22 3.69
449 3346 5.365025 TCCAATCATCCCTGACTAAAGAGAG 59.635 44.000 0.00 0.00 33.22 3.20
450 3347 5.280499 TCCAATCATCCCTGACTAAAGAGA 58.720 41.667 0.00 0.00 33.22 3.10
451 3348 5.620738 TCCAATCATCCCTGACTAAAGAG 57.379 43.478 0.00 0.00 33.22 2.85
452 3349 5.488919 AGTTCCAATCATCCCTGACTAAAGA 59.511 40.000 0.00 0.00 33.22 2.52
453 3350 5.749462 AGTTCCAATCATCCCTGACTAAAG 58.251 41.667 0.00 0.00 33.22 1.85
454 3351 5.779241 AGTTCCAATCATCCCTGACTAAA 57.221 39.130 0.00 0.00 33.22 1.85
455 3352 5.779241 AAGTTCCAATCATCCCTGACTAA 57.221 39.130 0.00 0.00 33.22 2.24
456 3353 5.779241 AAAGTTCCAATCATCCCTGACTA 57.221 39.130 0.00 0.00 33.22 2.59
457 3354 4.664688 AAAGTTCCAATCATCCCTGACT 57.335 40.909 0.00 0.00 33.22 3.41
458 3355 4.336713 GCTAAAGTTCCAATCATCCCTGAC 59.663 45.833 0.00 0.00 33.22 3.51
459 3356 4.526970 GCTAAAGTTCCAATCATCCCTGA 58.473 43.478 0.00 0.00 35.41 3.86
460 3357 3.633986 GGCTAAAGTTCCAATCATCCCTG 59.366 47.826 0.00 0.00 0.00 4.45
461 3358 3.529319 AGGCTAAAGTTCCAATCATCCCT 59.471 43.478 0.00 0.00 0.00 4.20
462 3359 3.885901 GAGGCTAAAGTTCCAATCATCCC 59.114 47.826 0.00 0.00 0.00 3.85
463 3360 4.786425 AGAGGCTAAAGTTCCAATCATCC 58.214 43.478 0.00 0.00 0.00 3.51
464 3361 7.865706 TTTAGAGGCTAAAGTTCCAATCATC 57.134 36.000 0.00 0.00 0.00 2.92
465 3362 8.650143 TTTTTAGAGGCTAAAGTTCCAATCAT 57.350 30.769 0.00 0.00 0.00 2.45
503 3400 9.449719 GGATTCAAGGAACTATTTTTAGTCTGA 57.550 33.333 0.00 0.00 38.49 3.27
504 3401 9.231297 TGGATTCAAGGAACTATTTTTAGTCTG 57.769 33.333 0.00 0.00 38.49 3.51
505 3402 9.807921 TTGGATTCAAGGAACTATTTTTAGTCT 57.192 29.630 0.00 0.00 38.49 3.24
508 3405 8.522830 TGCTTGGATTCAAGGAACTATTTTTAG 58.477 33.333 15.71 0.00 46.01 1.85
509 3406 8.415950 TGCTTGGATTCAAGGAACTATTTTTA 57.584 30.769 15.71 0.00 46.01 1.52
510 3407 7.301868 TGCTTGGATTCAAGGAACTATTTTT 57.698 32.000 15.71 0.00 46.01 1.94
511 3408 6.916360 TGCTTGGATTCAAGGAACTATTTT 57.084 33.333 15.71 0.00 46.01 1.82
522 3419 0.326595 TAGGCCGTGCTTGGATTCAA 59.673 50.000 0.00 0.00 0.00 2.69
523 3420 0.546122 ATAGGCCGTGCTTGGATTCA 59.454 50.000 0.00 0.00 0.00 2.57
524 3421 1.202698 AGATAGGCCGTGCTTGGATTC 60.203 52.381 0.00 0.00 0.00 2.52
525 3422 0.839946 AGATAGGCCGTGCTTGGATT 59.160 50.000 0.00 0.00 0.00 3.01
526 3423 0.394565 GAGATAGGCCGTGCTTGGAT 59.605 55.000 0.00 0.00 0.00 3.41
527 3424 0.687757 AGAGATAGGCCGTGCTTGGA 60.688 55.000 0.00 0.00 0.00 3.53
528 3425 0.179000 AAGAGATAGGCCGTGCTTGG 59.821 55.000 0.00 0.00 0.00 3.61
529 3426 1.293924 CAAGAGATAGGCCGTGCTTG 58.706 55.000 0.00 4.83 0.00 4.01
530 3427 0.462759 GCAAGAGATAGGCCGTGCTT 60.463 55.000 0.00 0.00 35.45 3.91
531 3428 1.144936 GCAAGAGATAGGCCGTGCT 59.855 57.895 0.00 0.00 35.45 4.40
532 3429 1.889573 GGCAAGAGATAGGCCGTGC 60.890 63.158 0.00 0.00 38.04 5.34
533 3430 4.445699 GGCAAGAGATAGGCCGTG 57.554 61.111 0.00 0.00 38.04 4.94
537 3434 1.952296 CCACATTGGCAAGAGATAGGC 59.048 52.381 5.96 0.00 0.00 3.93
538 3435 3.118112 ACTCCACATTGGCAAGAGATAGG 60.118 47.826 17.89 11.77 37.47 2.57
539 3436 4.148128 ACTCCACATTGGCAAGAGATAG 57.852 45.455 17.89 9.77 37.47 2.08
540 3437 4.469586 TGTACTCCACATTGGCAAGAGATA 59.530 41.667 17.89 6.76 37.47 1.98
554 3451 4.881273 TGTAATGAATGGCATGTACTCCAC 59.119 41.667 0.00 0.00 37.28 4.02
555 3452 5.109500 TGTAATGAATGGCATGTACTCCA 57.891 39.130 0.00 0.00 37.28 3.86
556 3453 5.126067 ACTGTAATGAATGGCATGTACTCC 58.874 41.667 0.00 0.00 37.28 3.85
557 3454 6.073548 GCTACTGTAATGAATGGCATGTACTC 60.074 42.308 0.00 0.00 37.28 2.59
558 3455 5.760253 GCTACTGTAATGAATGGCATGTACT 59.240 40.000 0.00 0.00 37.28 2.73
633 3541 9.408069 GATACTACTAAATTACAGACCATTCCG 57.592 37.037 0.00 0.00 0.00 4.30
712 3790 6.788598 TCTTCTCATAGATATCTCATGCCC 57.211 41.667 8.95 0.00 0.00 5.36
728 3806 7.004086 ACAAAAACCCAGACATTATCTTCTCA 58.996 34.615 0.00 0.00 34.41 3.27
742 3820 6.435904 TGGATAATAAGGTGACAAAAACCCAG 59.564 38.462 0.00 0.00 38.57 4.45
801 4434 1.380302 GATCTGTGGCACCACCCTT 59.620 57.895 16.26 1.52 45.63 3.95
844 4601 6.315144 CGACCCTTTCATTTTGTTTCCTTTTT 59.685 34.615 0.00 0.00 0.00 1.94
928 4696 0.591741 CGAGTAGATCCGCCACGAAC 60.592 60.000 0.00 0.00 0.00 3.95
976 4771 1.900016 CTTGAAGCTGGTGCCTGCA 60.900 57.895 19.61 0.00 42.23 4.41
987 4782 2.473984 GCTTGTGTTTGATGCTTGAAGC 59.526 45.455 10.84 10.84 42.82 3.86
989 4789 3.446799 GTGCTTGTGTTTGATGCTTGAA 58.553 40.909 0.00 0.00 0.00 2.69
1016 4831 3.359654 GGTTCGTTGTGTGTTGTGAATC 58.640 45.455 0.00 0.00 0.00 2.52
1019 4834 1.088306 GGGTTCGTTGTGTGTTGTGA 58.912 50.000 0.00 0.00 0.00 3.58
1055 4877 3.255642 GCTCGATCTCTCTTATCTGCCTT 59.744 47.826 0.00 0.00 0.00 4.35
1057 4879 2.414029 CGCTCGATCTCTCTTATCTGCC 60.414 54.545 0.00 0.00 0.00 4.85
1063 4886 1.954927 TGCTCGCTCGATCTCTCTTA 58.045 50.000 0.00 0.00 0.00 2.10
1403 5235 3.935203 TCGATCCAAGATGCAAGAAGAAC 59.065 43.478 0.00 0.00 0.00 3.01
1428 5275 8.442632 ACATAATCATCGTCAAGATCAACATT 57.557 30.769 0.00 0.00 37.52 2.71
1492 5352 0.539986 ATGTCCGCGTCCAGGTAAAT 59.460 50.000 4.92 0.00 0.00 1.40
1494 5354 1.514087 GATGTCCGCGTCCAGGTAA 59.486 57.895 4.92 0.00 0.00 2.85
1596 5456 2.204136 TGAGGGGTGTGGCTCCAT 60.204 61.111 0.00 0.00 41.40 3.41
1692 5552 1.080025 GCCGGCGTTGAAGTAGAGT 60.080 57.895 12.58 0.00 0.00 3.24
1869 5729 3.965026 CTCCGGGTGCCTCCAGAGA 62.965 68.421 0.00 0.00 39.20 3.10
2048 5957 2.757099 GCCCATGTTGGCCTCCTG 60.757 66.667 3.32 0.51 46.11 3.86
2064 5973 1.964552 CATCTTGATGTCCTCCCTGC 58.035 55.000 2.66 0.00 0.00 4.85
2388 6880 2.747446 ACGCCTCTATTTTTCGTGCAAT 59.253 40.909 0.00 0.00 31.74 3.56
2558 7107 1.447140 GTGCTAATCGGGTGCGTCA 60.447 57.895 0.00 0.00 0.00 4.35
2576 7125 3.258622 AGACAGAGGGAGTACTTTTTCGG 59.741 47.826 0.00 0.00 0.00 4.30
2578 7127 5.470047 TGAGACAGAGGGAGTACTTTTTC 57.530 43.478 0.00 0.00 0.00 2.29
2581 7130 5.888982 TTTTGAGACAGAGGGAGTACTTT 57.111 39.130 0.00 0.00 0.00 2.66
2582 7131 7.235812 ACTTATTTTGAGACAGAGGGAGTACTT 59.764 37.037 0.00 0.00 0.00 2.24
2587 7136 5.799213 ACACTTATTTTGAGACAGAGGGAG 58.201 41.667 0.00 0.00 0.00 4.30
2722 7271 8.325787 TCTGGCTACCACTAATTCAAATCTTTA 58.674 33.333 0.00 0.00 0.00 1.85
2758 7307 0.531657 CATTTTGGATGAGCGGCCAA 59.468 50.000 2.24 0.00 42.11 4.52
2835 7385 1.827789 GTGGACAAGGTGCAAGGCA 60.828 57.895 0.00 0.00 35.32 4.75
2836 7386 2.908073 CGTGGACAAGGTGCAAGGC 61.908 63.158 0.00 0.00 35.32 4.35
2838 7388 2.908073 GCCGTGGACAAGGTGCAAG 61.908 63.158 6.17 0.00 35.32 4.01
2839 7389 2.904866 GCCGTGGACAAGGTGCAA 60.905 61.111 6.17 0.00 35.32 4.08
2840 7390 4.947147 GGCCGTGGACAAGGTGCA 62.947 66.667 6.17 0.00 32.29 4.57
2841 7391 2.813226 TATGGCCGTGGACAAGGTGC 62.813 60.000 8.05 0.00 36.35 5.01
2842 7392 0.322098 TTATGGCCGTGGACAAGGTG 60.322 55.000 8.05 0.00 36.35 4.00
2843 7393 0.322187 GTTATGGCCGTGGACAAGGT 60.322 55.000 8.05 0.00 36.35 3.50
2855 7593 2.902343 GGGCCGAGCTGTTATGGC 60.902 66.667 0.00 0.00 46.82 4.40
2858 7596 1.689233 TCCAGGGCCGAGCTGTTAT 60.689 57.895 0.00 0.00 0.00 1.89
2873 7611 0.606604 GAGTAGGAAAGCACCGTCCA 59.393 55.000 0.00 0.00 36.28 4.02
2906 7644 1.529438 GTGATGCCGAAACGTTTCTCA 59.471 47.619 31.88 27.97 35.07 3.27
2909 7647 0.509499 TCGTGATGCCGAAACGTTTC 59.491 50.000 27.37 27.37 38.43 2.78
2910 7648 0.233848 GTCGTGATGCCGAAACGTTT 59.766 50.000 14.57 14.57 38.80 3.60
3013 7983 2.676342 CGGCGATAAATATACCTTGCCC 59.324 50.000 0.00 0.00 37.99 5.36
3018 7989 4.022935 TCAACGTCGGCGATAAATATACCT 60.023 41.667 20.03 0.00 42.00 3.08
3020 7991 4.089065 GGTCAACGTCGGCGATAAATATAC 59.911 45.833 20.03 6.07 42.00 1.47
3021 7992 4.229096 GGTCAACGTCGGCGATAAATATA 58.771 43.478 20.03 0.00 42.00 0.86
3022 7993 3.054878 GGTCAACGTCGGCGATAAATAT 58.945 45.455 20.03 0.00 42.00 1.28
3023 7994 2.159268 TGGTCAACGTCGGCGATAAATA 60.159 45.455 20.03 0.00 42.00 1.40
3024 7995 1.283736 GGTCAACGTCGGCGATAAAT 58.716 50.000 20.03 0.00 42.00 1.40
3025 7996 0.038435 TGGTCAACGTCGGCGATAAA 60.038 50.000 20.03 0.00 42.00 1.40
3026 7997 0.457166 CTGGTCAACGTCGGCGATAA 60.457 55.000 20.03 0.00 42.00 1.75
3069 8043 1.796459 GCAATAACTGTCGTCGGTGTT 59.204 47.619 0.00 0.00 32.95 3.32
3183 8184 2.125552 TCTGTTCATGCCGAGGCG 60.126 61.111 9.78 0.00 45.51 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.