Multiple sequence alignment - TraesCS2B01G109300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G109300 chr2B 100.000 3167 0 0 1 3167 70794693 70797859 0.000000e+00 5849.0
1 TraesCS2B01G109300 chr2B 94.911 393 11 5 2128 2511 70854835 70855227 9.710000e-170 606.0
2 TraesCS2B01G109300 chr2D 87.569 1094 90 28 1171 2223 44365131 44366219 0.000000e+00 1225.0
3 TraesCS2B01G109300 chr2D 90.548 857 56 11 1678 2524 44334456 44335297 0.000000e+00 1110.0
4 TraesCS2B01G109300 chr2D 89.912 228 18 4 1211 1437 44334093 44334316 4.000000e-74 289.0
5 TraesCS2B01G109300 chr2D 94.231 52 3 0 1523 1574 44334316 44334367 2.620000e-11 80.5
6 TraesCS2B01G109300 chr2D 90.000 50 5 0 817 866 44365017 44365066 7.330000e-07 65.8
7 TraesCS2B01G109300 chr1B 95.652 644 25 2 2525 3167 316575597 316574956 0.000000e+00 1031.0
8 TraesCS2B01G109300 chr2A 92.417 633 34 7 1678 2301 48198308 48198935 0.000000e+00 891.0
9 TraesCS2B01G109300 chr2A 89.685 572 41 4 881 1437 48197597 48198165 0.000000e+00 713.0
10 TraesCS2B01G109300 chr2A 86.595 649 49 22 2521 3167 451565004 451564392 0.000000e+00 682.0
11 TraesCS2B01G109300 chr2A 86.935 199 11 8 659 847 48193510 48193703 3.200000e-50 209.0
12 TraesCS2B01G109300 chr2A 86.087 115 13 1 1150 1264 48197767 48197878 1.540000e-23 121.0
13 TraesCS2B01G109300 chr2A 94.231 52 3 0 1523 1574 48198165 48198216 2.620000e-11 80.5
14 TraesCS2B01G109300 chr2A 97.222 36 1 0 9 44 332480075 332480040 9.490000e-06 62.1
15 TraesCS2B01G109300 chr5B 87.117 652 63 17 2525 3167 9356083 9355444 0.000000e+00 719.0
16 TraesCS2B01G109300 chr5B 86.885 305 30 7 2863 3167 115356062 115355768 1.820000e-87 333.0
17 TraesCS2B01G109300 chr5B 87.552 241 28 2 1233 1473 60819706 60819468 8.650000e-71 278.0
18 TraesCS2B01G109300 chr7B 86.310 672 55 24 2522 3167 620573898 620574558 0.000000e+00 697.0
19 TraesCS2B01G109300 chr7B 82.616 627 70 14 2574 3167 119733908 119733288 4.680000e-143 518.0
20 TraesCS2B01G109300 chr3A 86.801 644 53 18 2525 3167 105720146 105719534 0.000000e+00 689.0
21 TraesCS2B01G109300 chr3A 86.525 423 43 12 2518 2931 696498911 696498494 1.340000e-123 453.0
22 TraesCS2B01G109300 chr6B 86.078 668 56 24 2525 3167 255524332 255524987 0.000000e+00 684.0
23 TraesCS2B01G109300 chr6B 85.842 671 58 23 2523 3167 326979622 326978963 0.000000e+00 678.0
24 TraesCS2B01G109300 chr6B 85.544 671 58 26 2524 3167 102105365 102106023 0.000000e+00 665.0
25 TraesCS2B01G109300 chr5A 85.736 666 61 20 2525 3167 57047571 57048225 0.000000e+00 673.0
26 TraesCS2B01G109300 chr5A 84.012 344 48 5 2826 3167 428854537 428854199 1.100000e-84 324.0
27 TraesCS2B01G109300 chr5A 84.012 344 45 6 2826 3167 546812256 546812591 3.940000e-84 322.0
28 TraesCS2B01G109300 chr5A 81.763 329 55 5 1150 1477 45912409 45912733 1.450000e-68 270.0
29 TraesCS2B01G109300 chr7A 85.650 669 59 24 2525 3167 115022931 115022274 0.000000e+00 669.0
30 TraesCS2B01G109300 chr4A 83.721 344 49 5 2826 3167 574708025 574708363 5.100000e-83 318.0
31 TraesCS2B01G109300 chr4D 87.395 119 15 0 2387 2505 482880084 482879966 1.530000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G109300 chr2B 70794693 70797859 3166 False 5849.000000 5849 100.000000 1 3167 1 chr2B.!!$F1 3166
1 TraesCS2B01G109300 chr2D 44365017 44366219 1202 False 645.400000 1225 88.784500 817 2223 2 chr2D.!!$F2 1406
2 TraesCS2B01G109300 chr2D 44334093 44335297 1204 False 493.166667 1110 91.563667 1211 2524 3 chr2D.!!$F1 1313
3 TraesCS2B01G109300 chr1B 316574956 316575597 641 True 1031.000000 1031 95.652000 2525 3167 1 chr1B.!!$R1 642
4 TraesCS2B01G109300 chr2A 451564392 451565004 612 True 682.000000 682 86.595000 2521 3167 1 chr2A.!!$R2 646
5 TraesCS2B01G109300 chr2A 48193510 48198935 5425 False 402.900000 891 89.871000 659 2301 5 chr2A.!!$F1 1642
6 TraesCS2B01G109300 chr5B 9355444 9356083 639 True 719.000000 719 87.117000 2525 3167 1 chr5B.!!$R1 642
7 TraesCS2B01G109300 chr7B 620573898 620574558 660 False 697.000000 697 86.310000 2522 3167 1 chr7B.!!$F1 645
8 TraesCS2B01G109300 chr7B 119733288 119733908 620 True 518.000000 518 82.616000 2574 3167 1 chr7B.!!$R1 593
9 TraesCS2B01G109300 chr3A 105719534 105720146 612 True 689.000000 689 86.801000 2525 3167 1 chr3A.!!$R1 642
10 TraesCS2B01G109300 chr6B 255524332 255524987 655 False 684.000000 684 86.078000 2525 3167 1 chr6B.!!$F2 642
11 TraesCS2B01G109300 chr6B 326978963 326979622 659 True 678.000000 678 85.842000 2523 3167 1 chr6B.!!$R1 644
12 TraesCS2B01G109300 chr6B 102105365 102106023 658 False 665.000000 665 85.544000 2524 3167 1 chr6B.!!$F1 643
13 TraesCS2B01G109300 chr5A 57047571 57048225 654 False 673.000000 673 85.736000 2525 3167 1 chr5A.!!$F2 642
14 TraesCS2B01G109300 chr7A 115022274 115022931 657 True 669.000000 669 85.650000 2525 3167 1 chr7A.!!$R1 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 237 0.032130 CTTGCCATCCATCAGCATGC 59.968 55.0 10.51 10.51 36.2 4.06 F
745 756 0.032678 AGAACGCCTCGCATATCCTG 59.967 55.0 0.00 0.00 0.0 3.86 F
746 757 0.032130 GAACGCCTCGCATATCCTGA 59.968 55.0 0.00 0.00 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1507 5403 0.179073 TCTCCCTGCGCAATAAGAGC 60.179 55.0 13.05 0.0 44.03 4.09 R
1589 5500 0.246635 ACTAACCGCGATGAAGCAGT 59.753 50.0 8.23 0.0 36.85 4.40 R
2461 6409 0.723790 CGACTATAGCCGCGGTTACG 60.724 60.0 28.70 20.0 44.63 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.593346 ACTTGAAGGCATCTAGAGCG 57.407 50.000 8.12 0.00 35.25 5.03
24 25 1.827969 ACTTGAAGGCATCTAGAGCGT 59.172 47.619 8.12 1.27 35.25 5.07
25 26 2.159170 ACTTGAAGGCATCTAGAGCGTC 60.159 50.000 8.12 4.53 35.25 5.19
26 27 0.382158 TGAAGGCATCTAGAGCGTCG 59.618 55.000 0.00 0.00 0.00 5.12
27 28 0.663688 GAAGGCATCTAGAGCGTCGA 59.336 55.000 0.00 0.00 0.00 4.20
28 29 1.268352 GAAGGCATCTAGAGCGTCGAT 59.732 52.381 0.00 0.00 0.00 3.59
29 30 0.878416 AGGCATCTAGAGCGTCGATC 59.122 55.000 1.33 1.33 0.00 3.69
30 31 0.878416 GGCATCTAGAGCGTCGATCT 59.122 55.000 18.14 18.14 31.51 2.75
31 32 1.135803 GGCATCTAGAGCGTCGATCTC 60.136 57.143 17.56 3.91 28.73 2.75
32 33 1.463363 GCATCTAGAGCGTCGATCTCG 60.463 57.143 17.56 11.16 41.45 4.04
33 34 1.127766 CATCTAGAGCGTCGATCTCGG 59.872 57.143 17.56 11.24 40.29 4.63
34 35 0.600518 TCTAGAGCGTCGATCTCGGG 60.601 60.000 17.56 8.77 40.29 5.14
35 36 0.881159 CTAGAGCGTCGATCTCGGGT 60.881 60.000 17.56 0.00 40.29 5.28
36 37 0.879400 TAGAGCGTCGATCTCGGGTC 60.879 60.000 17.56 0.45 40.29 4.46
37 38 3.509296 GAGCGTCGATCTCGGGTCG 62.509 68.421 2.61 1.49 40.29 4.79
38 39 3.873883 GCGTCGATCTCGGGTCGT 61.874 66.667 0.00 0.00 39.91 4.34
39 40 2.789917 CGTCGATCTCGGGTCGTT 59.210 61.111 7.07 0.00 39.91 3.85
40 41 2.009108 CGTCGATCTCGGGTCGTTA 58.991 57.895 7.07 0.00 39.91 3.18
41 42 0.315706 CGTCGATCTCGGGTCGTTAC 60.316 60.000 7.07 0.00 39.91 2.50
42 43 0.729116 GTCGATCTCGGGTCGTTACA 59.271 55.000 7.07 0.00 39.91 2.41
43 44 1.012086 TCGATCTCGGGTCGTTACAG 58.988 55.000 7.07 0.00 39.91 2.74
44 45 1.012086 CGATCTCGGGTCGTTACAGA 58.988 55.000 0.00 0.00 34.56 3.41
45 46 1.003759 CGATCTCGGGTCGTTACAGAG 60.004 57.143 0.00 0.00 34.88 3.35
46 47 2.015587 GATCTCGGGTCGTTACAGAGT 58.984 52.381 0.00 0.00 35.04 3.24
47 48 1.446907 TCTCGGGTCGTTACAGAGTC 58.553 55.000 0.00 0.00 35.04 3.36
48 49 1.162698 CTCGGGTCGTTACAGAGTCA 58.837 55.000 0.00 0.00 31.31 3.41
49 50 1.743958 CTCGGGTCGTTACAGAGTCAT 59.256 52.381 0.00 0.00 31.31 3.06
50 51 2.941064 CTCGGGTCGTTACAGAGTCATA 59.059 50.000 0.00 0.00 31.31 2.15
51 52 2.941064 TCGGGTCGTTACAGAGTCATAG 59.059 50.000 0.00 0.00 0.00 2.23
52 53 2.033049 CGGGTCGTTACAGAGTCATAGG 59.967 54.545 0.00 0.00 0.00 2.57
53 54 2.361438 GGGTCGTTACAGAGTCATAGGG 59.639 54.545 0.00 0.00 0.00 3.53
54 55 3.022406 GGTCGTTACAGAGTCATAGGGT 58.978 50.000 0.00 0.00 0.00 4.34
55 56 3.446516 GGTCGTTACAGAGTCATAGGGTT 59.553 47.826 0.00 0.00 0.00 4.11
56 57 4.081807 GGTCGTTACAGAGTCATAGGGTTT 60.082 45.833 0.00 0.00 0.00 3.27
57 58 5.100943 GTCGTTACAGAGTCATAGGGTTTC 58.899 45.833 0.00 0.00 0.00 2.78
58 59 4.159135 TCGTTACAGAGTCATAGGGTTTCC 59.841 45.833 0.00 0.00 0.00 3.13
59 60 4.679905 CGTTACAGAGTCATAGGGTTTCCC 60.680 50.000 0.00 0.00 45.90 3.97
70 71 2.789491 GGGTTTCCCTCGATACGTAG 57.211 55.000 0.08 0.00 41.34 3.51
71 72 2.301346 GGGTTTCCCTCGATACGTAGA 58.699 52.381 0.08 0.00 41.34 2.59
72 73 2.292845 GGGTTTCCCTCGATACGTAGAG 59.707 54.545 0.08 3.11 41.34 2.43
78 79 1.595466 CTCGATACGTAGAGGGCAGT 58.405 55.000 0.08 0.00 0.00 4.40
79 80 1.264557 CTCGATACGTAGAGGGCAGTG 59.735 57.143 0.08 0.00 0.00 3.66
80 81 0.311165 CGATACGTAGAGGGCAGTGG 59.689 60.000 0.08 0.00 0.00 4.00
81 82 0.674534 GATACGTAGAGGGCAGTGGG 59.325 60.000 0.08 0.00 0.00 4.61
82 83 0.759436 ATACGTAGAGGGCAGTGGGG 60.759 60.000 0.08 0.00 0.00 4.96
83 84 1.866483 TACGTAGAGGGCAGTGGGGA 61.866 60.000 0.00 0.00 0.00 4.81
84 85 2.427245 CGTAGAGGGCAGTGGGGAG 61.427 68.421 0.00 0.00 0.00 4.30
85 86 2.066999 GTAGAGGGCAGTGGGGAGG 61.067 68.421 0.00 0.00 0.00 4.30
86 87 3.332393 TAGAGGGCAGTGGGGAGGG 62.332 68.421 0.00 0.00 0.00 4.30
89 90 4.752594 GGGCAGTGGGGAGGGGTA 62.753 72.222 0.00 0.00 0.00 3.69
90 91 3.408853 GGCAGTGGGGAGGGGTAC 61.409 72.222 0.00 0.00 0.00 3.34
91 92 2.609610 GCAGTGGGGAGGGGTACA 60.610 66.667 0.00 0.00 0.00 2.90
92 93 2.967946 GCAGTGGGGAGGGGTACAC 61.968 68.421 0.00 0.00 0.00 2.90
93 94 2.124312 AGTGGGGAGGGGTACACC 59.876 66.667 5.83 5.83 34.50 4.16
94 95 2.124312 GTGGGGAGGGGTACACCT 59.876 66.667 19.18 19.18 45.57 4.00
95 96 2.124085 TGGGGAGGGGTACACCTG 59.876 66.667 24.93 0.00 42.10 4.00
96 97 2.453054 GGGGAGGGGTACACCTGA 59.547 66.667 24.93 0.00 42.10 3.86
97 98 1.689582 GGGGAGGGGTACACCTGAG 60.690 68.421 24.93 0.00 42.10 3.35
98 99 1.689582 GGGAGGGGTACACCTGAGG 60.690 68.421 24.93 0.00 42.10 3.86
99 100 2.368011 GGAGGGGTACACCTGAGGC 61.368 68.421 24.93 6.73 42.10 4.70
100 101 2.285442 AGGGGTACACCTGAGGCC 60.285 66.667 18.28 0.00 40.04 5.19
101 102 2.609610 GGGGTACACCTGAGGCCA 60.610 66.667 6.99 0.00 40.03 5.36
102 103 2.001269 GGGGTACACCTGAGGCCAT 61.001 63.158 6.99 0.00 40.03 4.40
103 104 1.571773 GGGGTACACCTGAGGCCATT 61.572 60.000 6.99 0.00 40.03 3.16
104 105 0.107165 GGGTACACCTGAGGCCATTC 60.107 60.000 5.01 0.00 35.85 2.67
105 106 0.618458 GGTACACCTGAGGCCATTCA 59.382 55.000 5.01 0.00 0.00 2.57
106 107 1.407437 GGTACACCTGAGGCCATTCAG 60.407 57.143 13.83 13.83 43.35 3.02
111 112 3.491208 CTGAGGCCATTCAGGAAGG 57.509 57.895 13.10 0.00 40.69 3.46
112 113 0.914644 CTGAGGCCATTCAGGAAGGA 59.085 55.000 13.10 0.00 40.69 3.36
113 114 0.914644 TGAGGCCATTCAGGAAGGAG 59.085 55.000 5.01 0.00 41.22 3.69
114 115 1.207791 GAGGCCATTCAGGAAGGAGA 58.792 55.000 5.01 0.00 41.22 3.71
115 116 1.140652 GAGGCCATTCAGGAAGGAGAG 59.859 57.143 5.01 0.00 41.22 3.20
116 117 0.182299 GGCCATTCAGGAAGGAGAGG 59.818 60.000 0.00 0.00 41.22 3.69
117 118 0.465278 GCCATTCAGGAAGGAGAGGC 60.465 60.000 0.00 0.00 41.22 4.70
118 119 0.179062 CCATTCAGGAAGGAGAGGCG 60.179 60.000 0.00 0.00 41.22 5.52
119 120 0.179062 CATTCAGGAAGGAGAGGCGG 60.179 60.000 0.00 0.00 0.00 6.13
120 121 1.977293 ATTCAGGAAGGAGAGGCGGC 61.977 60.000 0.00 0.00 0.00 6.53
121 122 3.393970 CAGGAAGGAGAGGCGGCA 61.394 66.667 13.08 0.00 0.00 5.69
122 123 3.394836 AGGAAGGAGAGGCGGCAC 61.395 66.667 13.08 4.59 0.00 5.01
123 124 4.475135 GGAAGGAGAGGCGGCACC 62.475 72.222 13.08 11.70 39.61 5.01
133 134 4.487412 GCGGCACCTGCAAGCATC 62.487 66.667 10.80 0.00 44.36 3.91
134 135 3.057548 CGGCACCTGCAAGCATCA 61.058 61.111 7.61 0.00 44.36 3.07
135 136 2.570181 GGCACCTGCAAGCATCAC 59.430 61.111 7.61 0.00 44.36 3.06
136 137 1.975407 GGCACCTGCAAGCATCACT 60.975 57.895 7.61 0.00 44.36 3.41
137 138 1.211969 GCACCTGCAAGCATCACTG 59.788 57.895 0.00 0.00 41.59 3.66
138 139 2.814183 GCACCTGCAAGCATCACTGC 62.814 60.000 0.00 0.00 44.19 4.40
146 147 3.558411 GCATCACTGCGTCGGAGC 61.558 66.667 14.24 0.00 38.92 4.70
147 148 2.887568 CATCACTGCGTCGGAGCC 60.888 66.667 14.24 0.00 36.02 4.70
148 149 4.498520 ATCACTGCGTCGGAGCCG 62.499 66.667 14.24 5.56 41.35 5.52
154 155 4.856607 GCGTCGGAGCCGGAGAAG 62.857 72.222 5.05 1.70 40.25 2.85
155 156 4.856607 CGTCGGAGCCGGAGAAGC 62.857 72.222 5.05 0.00 40.25 3.86
156 157 4.516195 GTCGGAGCCGGAGAAGCC 62.516 72.222 5.05 0.00 40.25 4.35
175 176 2.726832 CGATAGGGATTTCTCCGACC 57.273 55.000 0.00 0.00 43.11 4.79
176 177 2.240279 CGATAGGGATTTCTCCGACCT 58.760 52.381 0.00 0.00 43.11 3.85
177 178 2.628657 CGATAGGGATTTCTCCGACCTT 59.371 50.000 0.00 0.00 43.11 3.50
178 179 3.825014 CGATAGGGATTTCTCCGACCTTA 59.175 47.826 0.00 0.00 43.11 2.69
179 180 4.280174 CGATAGGGATTTCTCCGACCTTAA 59.720 45.833 0.00 0.00 43.11 1.85
180 181 5.221382 CGATAGGGATTTCTCCGACCTTAAA 60.221 44.000 0.00 0.00 43.11 1.52
181 182 4.921644 AGGGATTTCTCCGACCTTAAAA 57.078 40.909 0.00 0.00 43.11 1.52
182 183 5.251182 AGGGATTTCTCCGACCTTAAAAA 57.749 39.130 0.00 0.00 43.11 1.94
202 203 3.713826 AAACACCACCTGATAATCCGT 57.286 42.857 0.00 0.00 0.00 4.69
203 204 4.829872 AAACACCACCTGATAATCCGTA 57.170 40.909 0.00 0.00 0.00 4.02
204 205 4.402056 AACACCACCTGATAATCCGTAG 57.598 45.455 0.00 0.00 0.00 3.51
205 206 3.371965 ACACCACCTGATAATCCGTAGT 58.628 45.455 0.00 0.00 0.00 2.73
206 207 3.132289 ACACCACCTGATAATCCGTAGTG 59.868 47.826 0.00 0.00 0.00 2.74
207 208 2.102588 ACCACCTGATAATCCGTAGTGC 59.897 50.000 0.00 0.00 0.00 4.40
208 209 2.365617 CCACCTGATAATCCGTAGTGCT 59.634 50.000 0.00 0.00 0.00 4.40
209 210 3.553096 CCACCTGATAATCCGTAGTGCTC 60.553 52.174 0.00 0.00 0.00 4.26
210 211 2.628657 ACCTGATAATCCGTAGTGCTCC 59.371 50.000 0.00 0.00 0.00 4.70
211 212 2.628178 CCTGATAATCCGTAGTGCTCCA 59.372 50.000 0.00 0.00 0.00 3.86
212 213 3.553096 CCTGATAATCCGTAGTGCTCCAC 60.553 52.174 0.00 0.00 34.10 4.02
213 214 2.364324 TGATAATCCGTAGTGCTCCACC 59.636 50.000 0.00 0.00 34.49 4.61
214 215 1.117150 TAATCCGTAGTGCTCCACCC 58.883 55.000 0.00 0.00 34.49 4.61
215 216 0.907704 AATCCGTAGTGCTCCACCCA 60.908 55.000 0.00 0.00 34.49 4.51
216 217 0.907704 ATCCGTAGTGCTCCACCCAA 60.908 55.000 0.00 0.00 34.49 4.12
217 218 1.375523 CCGTAGTGCTCCACCCAAC 60.376 63.158 0.00 0.00 34.49 3.77
218 219 1.671742 CGTAGTGCTCCACCCAACT 59.328 57.895 0.00 0.00 34.49 3.16
219 220 0.034896 CGTAGTGCTCCACCCAACTT 59.965 55.000 0.00 0.00 34.49 2.66
220 221 1.523758 GTAGTGCTCCACCCAACTTG 58.476 55.000 0.00 0.00 34.49 3.16
221 222 0.250727 TAGTGCTCCACCCAACTTGC 60.251 55.000 0.00 0.00 34.49 4.01
222 223 2.203480 TGCTCCACCCAACTTGCC 60.203 61.111 0.00 0.00 0.00 4.52
223 224 2.203480 GCTCCACCCAACTTGCCA 60.203 61.111 0.00 0.00 0.00 4.92
224 225 1.607467 GCTCCACCCAACTTGCCAT 60.607 57.895 0.00 0.00 0.00 4.40
225 226 1.598701 GCTCCACCCAACTTGCCATC 61.599 60.000 0.00 0.00 0.00 3.51
226 227 0.967380 CTCCACCCAACTTGCCATCC 60.967 60.000 0.00 0.00 0.00 3.51
227 228 1.228831 CCACCCAACTTGCCATCCA 60.229 57.895 0.00 0.00 0.00 3.41
228 229 0.615544 CCACCCAACTTGCCATCCAT 60.616 55.000 0.00 0.00 0.00 3.41
229 230 0.819582 CACCCAACTTGCCATCCATC 59.180 55.000 0.00 0.00 0.00 3.51
230 231 0.409092 ACCCAACTTGCCATCCATCA 59.591 50.000 0.00 0.00 0.00 3.07
231 232 1.108776 CCCAACTTGCCATCCATCAG 58.891 55.000 0.00 0.00 0.00 2.90
232 233 0.458669 CCAACTTGCCATCCATCAGC 59.541 55.000 0.00 0.00 0.00 4.26
233 234 1.179152 CAACTTGCCATCCATCAGCA 58.821 50.000 0.00 0.00 33.97 4.41
234 235 1.754803 CAACTTGCCATCCATCAGCAT 59.245 47.619 0.00 0.00 36.20 3.79
235 236 1.399714 ACTTGCCATCCATCAGCATG 58.600 50.000 0.00 0.00 36.20 4.06
236 237 0.032130 CTTGCCATCCATCAGCATGC 59.968 55.000 10.51 10.51 36.20 4.06
237 238 0.684805 TTGCCATCCATCAGCATGCA 60.685 50.000 21.98 0.00 36.20 3.96
238 239 1.362717 GCCATCCATCAGCATGCAC 59.637 57.895 21.98 0.00 34.76 4.57
239 240 2.038690 CCATCCATCAGCATGCACC 58.961 57.895 21.98 0.00 34.76 5.01
240 241 0.753848 CCATCCATCAGCATGCACCA 60.754 55.000 21.98 2.71 34.76 4.17
241 242 0.384309 CATCCATCAGCATGCACCAC 59.616 55.000 21.98 0.00 34.76 4.16
242 243 0.754217 ATCCATCAGCATGCACCACC 60.754 55.000 21.98 0.00 34.76 4.61
243 244 1.679641 CCATCAGCATGCACCACCA 60.680 57.895 21.98 0.00 34.76 4.17
244 245 1.509463 CATCAGCATGCACCACCAC 59.491 57.895 21.98 0.00 34.76 4.16
245 246 2.042259 ATCAGCATGCACCACCACG 61.042 57.895 21.98 0.00 34.76 4.94
246 247 3.740397 CAGCATGCACCACCACGG 61.740 66.667 21.98 0.00 42.50 4.94
249 250 2.046411 CATGCACCACCACGGCTA 60.046 61.111 0.00 0.00 39.03 3.93
250 251 2.046314 ATGCACCACCACGGCTAC 60.046 61.111 0.00 0.00 39.03 3.58
251 252 2.889606 ATGCACCACCACGGCTACA 61.890 57.895 0.00 0.00 39.03 2.74
252 253 2.281208 GCACCACCACGGCTACAA 60.281 61.111 0.00 0.00 39.03 2.41
253 254 2.613506 GCACCACCACGGCTACAAC 61.614 63.158 0.00 0.00 39.03 3.32
254 255 2.029964 ACCACCACGGCTACAACG 59.970 61.111 0.00 0.00 39.03 4.10
255 256 3.419759 CCACCACGGCTACAACGC 61.420 66.667 0.00 0.00 34.00 4.84
256 257 3.419759 CACCACGGCTACAACGCC 61.420 66.667 0.00 0.00 46.68 5.68
262 263 2.187163 GGCTACAACGCCCTCCTC 59.813 66.667 0.00 0.00 44.41 3.71
263 264 2.359967 GGCTACAACGCCCTCCTCT 61.360 63.158 0.00 0.00 44.41 3.69
264 265 1.041447 GGCTACAACGCCCTCCTCTA 61.041 60.000 0.00 0.00 44.41 2.43
265 266 1.041437 GCTACAACGCCCTCCTCTAT 58.959 55.000 0.00 0.00 0.00 1.98
266 267 1.269831 GCTACAACGCCCTCCTCTATG 60.270 57.143 0.00 0.00 0.00 2.23
267 268 0.750850 TACAACGCCCTCCTCTATGC 59.249 55.000 0.00 0.00 0.00 3.14
268 269 1.227674 CAACGCCCTCCTCTATGCC 60.228 63.158 0.00 0.00 0.00 4.40
269 270 1.383248 AACGCCCTCCTCTATGCCT 60.383 57.895 0.00 0.00 0.00 4.75
270 271 1.403687 AACGCCCTCCTCTATGCCTC 61.404 60.000 0.00 0.00 0.00 4.70
271 272 1.834378 CGCCCTCCTCTATGCCTCA 60.834 63.158 0.00 0.00 0.00 3.86
272 273 1.751563 GCCCTCCTCTATGCCTCAC 59.248 63.158 0.00 0.00 0.00 3.51
273 274 0.762461 GCCCTCCTCTATGCCTCACT 60.762 60.000 0.00 0.00 0.00 3.41
274 275 1.481428 GCCCTCCTCTATGCCTCACTA 60.481 57.143 0.00 0.00 0.00 2.74
275 276 2.825072 GCCCTCCTCTATGCCTCACTAT 60.825 54.545 0.00 0.00 0.00 2.12
276 277 2.830923 CCCTCCTCTATGCCTCACTATG 59.169 54.545 0.00 0.00 0.00 2.23
277 278 2.830923 CCTCCTCTATGCCTCACTATGG 59.169 54.545 0.00 0.00 0.00 2.74
278 279 3.505386 CTCCTCTATGCCTCACTATGGT 58.495 50.000 0.00 0.00 0.00 3.55
279 280 3.501349 TCCTCTATGCCTCACTATGGTC 58.499 50.000 0.00 0.00 0.00 4.02
280 281 3.117131 TCCTCTATGCCTCACTATGGTCA 60.117 47.826 0.00 0.00 0.00 4.02
281 282 3.006323 CCTCTATGCCTCACTATGGTCAC 59.994 52.174 0.00 0.00 0.00 3.67
282 283 2.965831 TCTATGCCTCACTATGGTCACC 59.034 50.000 0.00 0.00 0.00 4.02
283 284 1.583556 ATGCCTCACTATGGTCACCA 58.416 50.000 0.00 0.00 38.19 4.17
284 285 0.904649 TGCCTCACTATGGTCACCAG 59.095 55.000 1.19 0.00 36.75 4.00
285 286 0.462759 GCCTCACTATGGTCACCAGC 60.463 60.000 1.19 0.00 36.75 4.85
286 287 0.904649 CCTCACTATGGTCACCAGCA 59.095 55.000 1.19 0.00 36.75 4.41
287 288 1.406069 CCTCACTATGGTCACCAGCAC 60.406 57.143 1.19 0.00 36.75 4.40
288 289 0.246360 TCACTATGGTCACCAGCACG 59.754 55.000 1.19 0.00 36.75 5.34
289 290 0.246360 CACTATGGTCACCAGCACGA 59.754 55.000 1.19 0.00 36.75 4.35
290 291 0.532573 ACTATGGTCACCAGCACGAG 59.467 55.000 1.19 0.00 36.75 4.18
291 292 0.179100 CTATGGTCACCAGCACGAGG 60.179 60.000 1.19 0.00 36.75 4.63
292 293 2.238847 TATGGTCACCAGCACGAGGC 62.239 60.000 1.19 0.00 45.30 4.70
294 295 4.008933 GTCACCAGCACGAGGCCT 62.009 66.667 3.86 3.86 46.50 5.19
295 296 2.283604 TCACCAGCACGAGGCCTA 60.284 61.111 4.42 0.00 46.50 3.93
296 297 2.185350 CACCAGCACGAGGCCTAG 59.815 66.667 4.42 8.81 46.50 3.02
297 298 2.037367 ACCAGCACGAGGCCTAGA 59.963 61.111 20.86 0.00 46.50 2.43
298 299 2.055042 ACCAGCACGAGGCCTAGAG 61.055 63.158 20.86 13.15 46.50 2.43
299 300 2.790791 CCAGCACGAGGCCTAGAGG 61.791 68.421 20.86 11.94 46.50 3.69
300 301 1.754621 CAGCACGAGGCCTAGAGGA 60.755 63.158 20.86 0.00 46.50 3.71
301 302 1.000486 AGCACGAGGCCTAGAGGAA 60.000 57.895 20.86 0.00 46.50 3.36
302 303 0.614979 AGCACGAGGCCTAGAGGAAA 60.615 55.000 20.86 0.00 46.50 3.13
303 304 0.179097 GCACGAGGCCTAGAGGAAAG 60.179 60.000 20.86 3.28 37.39 2.62
304 305 1.475403 CACGAGGCCTAGAGGAAAGA 58.525 55.000 20.86 0.00 37.39 2.52
305 306 1.825474 CACGAGGCCTAGAGGAAAGAA 59.175 52.381 20.86 0.00 37.39 2.52
306 307 2.432510 CACGAGGCCTAGAGGAAAGAAT 59.567 50.000 20.86 0.00 37.39 2.40
307 308 3.637229 CACGAGGCCTAGAGGAAAGAATA 59.363 47.826 20.86 0.00 37.39 1.75
308 309 3.892588 ACGAGGCCTAGAGGAAAGAATAG 59.107 47.826 20.86 0.00 37.39 1.73
309 310 3.257127 CGAGGCCTAGAGGAAAGAATAGG 59.743 52.174 4.42 0.00 38.26 2.57
310 311 3.580895 GAGGCCTAGAGGAAAGAATAGGG 59.419 52.174 4.42 0.00 36.17 3.53
311 312 2.640332 GGCCTAGAGGAAAGAATAGGGG 59.360 54.545 0.00 0.00 36.17 4.79
312 313 3.588569 GCCTAGAGGAAAGAATAGGGGA 58.411 50.000 0.00 0.00 36.17 4.81
313 314 3.325425 GCCTAGAGGAAAGAATAGGGGAC 59.675 52.174 0.00 0.00 36.17 4.46
314 315 3.574826 CCTAGAGGAAAGAATAGGGGACG 59.425 52.174 0.00 0.00 37.39 4.79
315 316 2.399580 AGAGGAAAGAATAGGGGACGG 58.600 52.381 0.00 0.00 0.00 4.79
316 317 0.837940 AGGAAAGAATAGGGGACGGC 59.162 55.000 0.00 0.00 0.00 5.68
317 318 0.532196 GGAAAGAATAGGGGACGGCG 60.532 60.000 4.80 4.80 0.00 6.46
318 319 0.462789 GAAAGAATAGGGGACGGCGA 59.537 55.000 16.62 0.00 0.00 5.54
319 320 0.906775 AAAGAATAGGGGACGGCGAA 59.093 50.000 16.62 0.00 0.00 4.70
320 321 0.906775 AAGAATAGGGGACGGCGAAA 59.093 50.000 16.62 0.00 0.00 3.46
321 322 0.177373 AGAATAGGGGACGGCGAAAC 59.823 55.000 16.62 4.28 0.00 2.78
322 323 0.812811 GAATAGGGGACGGCGAAACC 60.813 60.000 16.62 13.78 0.00 3.27
333 334 2.907917 CGAAACCGGGGGCAACAA 60.908 61.111 6.32 0.00 39.74 2.83
334 335 2.732016 GAAACCGGGGGCAACAAC 59.268 61.111 6.32 0.00 39.74 3.32
335 336 2.042843 AAACCGGGGGCAACAACA 60.043 55.556 6.32 0.00 39.74 3.33
336 337 2.358193 GAAACCGGGGGCAACAACAC 62.358 60.000 6.32 0.00 39.74 3.32
337 338 4.906537 ACCGGGGGCAACAACACC 62.907 66.667 6.32 0.00 39.74 4.16
340 341 2.113562 GGGGGCAACAACACCGTA 59.886 61.111 0.00 0.00 39.74 4.02
341 342 1.303806 GGGGGCAACAACACCGTAT 60.304 57.895 0.00 0.00 39.74 3.06
342 343 0.896479 GGGGGCAACAACACCGTATT 60.896 55.000 0.00 0.00 39.74 1.89
343 344 0.242555 GGGGCAACAACACCGTATTG 59.757 55.000 0.00 0.00 39.74 1.90
344 345 1.240256 GGGCAACAACACCGTATTGA 58.760 50.000 0.00 0.00 39.74 2.57
345 346 1.199097 GGGCAACAACACCGTATTGAG 59.801 52.381 0.00 0.00 39.74 3.02
346 347 1.401018 GGCAACAACACCGTATTGAGC 60.401 52.381 0.00 0.33 33.76 4.26
347 348 1.724654 GCAACAACACCGTATTGAGCG 60.725 52.381 0.00 0.00 0.00 5.03
353 354 2.421739 CCGTATTGAGCGGGAGGG 59.578 66.667 0.00 0.00 44.98 4.30
354 355 2.131709 CCGTATTGAGCGGGAGGGA 61.132 63.158 0.00 0.00 44.98 4.20
355 356 1.682451 CCGTATTGAGCGGGAGGGAA 61.682 60.000 0.00 0.00 44.98 3.97
356 357 0.529992 CGTATTGAGCGGGAGGGAAC 60.530 60.000 0.00 0.00 0.00 3.62
357 358 0.539986 GTATTGAGCGGGAGGGAACA 59.460 55.000 0.00 0.00 0.00 3.18
358 359 1.065709 GTATTGAGCGGGAGGGAACAA 60.066 52.381 0.00 0.00 0.00 2.83
359 360 0.625849 ATTGAGCGGGAGGGAACAAT 59.374 50.000 0.00 0.00 0.00 2.71
360 361 0.035439 TTGAGCGGGAGGGAACAATC 60.035 55.000 0.00 0.00 0.00 2.67
361 362 0.909610 TGAGCGGGAGGGAACAATCT 60.910 55.000 0.00 0.00 0.00 2.40
362 363 0.179070 GAGCGGGAGGGAACAATCTC 60.179 60.000 0.00 0.00 0.00 2.75
363 364 1.153147 GCGGGAGGGAACAATCTCC 60.153 63.158 0.00 0.00 46.57 3.71
365 366 4.542075 GGAGGGAACAATCTCCGC 57.458 61.111 0.00 0.00 39.95 5.54
366 367 1.153147 GGAGGGAACAATCTCCGCC 60.153 63.158 0.00 0.00 39.95 6.13
367 368 1.521681 GAGGGAACAATCTCCGCCG 60.522 63.158 0.00 0.00 36.21 6.46
368 369 3.202706 GGGAACAATCTCCGCCGC 61.203 66.667 0.00 0.00 36.21 6.53
369 370 3.202706 GGAACAATCTCCGCCGCC 61.203 66.667 0.00 0.00 0.00 6.13
370 371 3.202706 GAACAATCTCCGCCGCCC 61.203 66.667 0.00 0.00 0.00 6.13
371 372 3.682292 GAACAATCTCCGCCGCCCT 62.682 63.158 0.00 0.00 0.00 5.19
372 373 3.682292 AACAATCTCCGCCGCCCTC 62.682 63.158 0.00 0.00 0.00 4.30
383 384 4.735132 CGCCCTCGCAGAAACCGA 62.735 66.667 0.00 0.00 34.09 4.69
384 385 3.119096 GCCCTCGCAGAAACCGAC 61.119 66.667 0.00 0.00 34.09 4.79
385 386 2.434359 CCCTCGCAGAAACCGACC 60.434 66.667 0.00 0.00 34.09 4.79
386 387 2.809601 CCTCGCAGAAACCGACCG 60.810 66.667 0.00 0.00 34.09 4.79
387 388 2.809601 CTCGCAGAAACCGACCGG 60.810 66.667 6.94 6.94 37.43 5.28
388 389 3.277211 CTCGCAGAAACCGACCGGA 62.277 63.158 16.07 0.00 35.69 5.14
389 390 3.110178 CGCAGAAACCGACCGGAC 61.110 66.667 16.07 0.00 38.96 4.79
390 391 3.110178 GCAGAAACCGACCGGACG 61.110 66.667 19.55 19.55 38.96 4.79
391 392 3.110178 CAGAAACCGACCGGACGC 61.110 66.667 21.02 7.17 38.96 5.19
392 393 4.712425 AGAAACCGACCGGACGCG 62.712 66.667 21.02 15.71 38.96 6.01
393 394 4.705519 GAAACCGACCGGACGCGA 62.706 66.667 21.02 0.00 38.96 5.87
408 409 4.712425 CGACCGTCGGGGACACAC 62.712 72.222 17.28 0.00 39.97 3.82
409 410 4.368543 GACCGTCGGGGACACACC 62.369 72.222 17.28 0.00 39.97 4.16
411 412 4.373116 CCGTCGGGGACACACCAG 62.373 72.222 2.34 0.00 41.20 4.00
412 413 4.373116 CGTCGGGGACACACCAGG 62.373 72.222 0.00 0.00 41.20 4.45
413 414 4.699522 GTCGGGGACACACCAGGC 62.700 72.222 0.00 0.00 41.20 4.85
418 419 2.609610 GGACACACCAGGCCCCTA 60.610 66.667 0.00 0.00 38.79 3.53
419 420 2.669240 GACACACCAGGCCCCTAC 59.331 66.667 0.00 0.00 0.00 3.18
420 421 1.918800 GACACACCAGGCCCCTACT 60.919 63.158 0.00 0.00 0.00 2.57
421 422 1.463410 ACACACCAGGCCCCTACTT 60.463 57.895 0.00 0.00 0.00 2.24
422 423 1.299976 CACACCAGGCCCCTACTTC 59.700 63.158 0.00 0.00 0.00 3.01
423 424 1.923909 ACACCAGGCCCCTACTTCC 60.924 63.158 0.00 0.00 0.00 3.46
424 425 2.286197 ACCAGGCCCCTACTTCCC 60.286 66.667 0.00 0.00 0.00 3.97
425 426 3.097162 CCAGGCCCCTACTTCCCC 61.097 72.222 0.00 0.00 0.00 4.81
426 427 3.480133 CAGGCCCCTACTTCCCCG 61.480 72.222 0.00 0.00 0.00 5.73
427 428 4.817909 AGGCCCCTACTTCCCCGG 62.818 72.222 0.00 0.00 0.00 5.73
429 430 3.477346 GCCCCTACTTCCCCGGTC 61.477 72.222 0.00 0.00 0.00 4.79
430 431 2.039951 CCCCTACTTCCCCGGTCA 59.960 66.667 0.00 0.00 0.00 4.02
431 432 2.064581 CCCCTACTTCCCCGGTCAG 61.065 68.421 0.00 0.00 0.00 3.51
432 433 2.064581 CCCTACTTCCCCGGTCAGG 61.065 68.421 0.00 0.00 40.63 3.86
433 434 2.732619 CCTACTTCCCCGGTCAGGC 61.733 68.421 0.00 0.00 39.21 4.85
434 435 2.686106 TACTTCCCCGGTCAGGCC 60.686 66.667 0.00 0.00 39.21 5.19
483 484 4.086178 GCTGCAGCACGCTCACTG 62.086 66.667 33.36 0.00 43.06 3.66
484 485 3.420606 CTGCAGCACGCTCACTGG 61.421 66.667 0.00 0.00 43.06 4.00
487 488 3.420606 CAGCACGCTCACTGGCAG 61.421 66.667 14.16 14.16 0.00 4.85
507 508 4.394712 CCGCCACCACCAGGAGAC 62.395 72.222 0.00 0.00 38.69 3.36
508 509 4.394712 CGCCACCACCAGGAGACC 62.395 72.222 0.00 0.00 38.69 3.85
509 510 3.249189 GCCACCACCAGGAGACCA 61.249 66.667 0.00 0.00 38.69 4.02
510 511 2.750350 CCACCACCAGGAGACCAC 59.250 66.667 0.00 0.00 38.69 4.16
511 512 2.750350 CACCACCAGGAGACCACC 59.250 66.667 0.00 0.00 38.69 4.61
512 513 2.923035 ACCACCAGGAGACCACCG 60.923 66.667 0.00 0.00 38.69 4.94
513 514 2.923035 CCACCAGGAGACCACCGT 60.923 66.667 0.00 0.00 36.89 4.83
514 515 2.657237 CACCAGGAGACCACCGTC 59.343 66.667 0.00 0.00 39.50 4.79
515 516 2.989824 ACCAGGAGACCACCGTCG 60.990 66.667 0.00 0.00 44.28 5.12
516 517 4.436998 CCAGGAGACCACCGTCGC 62.437 72.222 0.00 0.00 44.28 5.19
517 518 3.680786 CAGGAGACCACCGTCGCA 61.681 66.667 0.00 0.00 44.28 5.10
518 519 3.681835 AGGAGACCACCGTCGCAC 61.682 66.667 0.00 0.00 44.28 5.34
519 520 4.736896 GGAGACCACCGTCGCACC 62.737 72.222 0.00 0.00 44.28 5.01
520 521 3.986006 GAGACCACCGTCGCACCA 61.986 66.667 0.00 0.00 44.28 4.17
521 522 4.295119 AGACCACCGTCGCACCAC 62.295 66.667 0.00 0.00 44.28 4.16
524 525 4.619227 CCACCGTCGCACCACCTT 62.619 66.667 0.00 0.00 0.00 3.50
525 526 3.041940 CACCGTCGCACCACCTTC 61.042 66.667 0.00 0.00 0.00 3.46
526 527 3.542676 ACCGTCGCACCACCTTCA 61.543 61.111 0.00 0.00 0.00 3.02
527 528 3.041940 CCGTCGCACCACCTTCAC 61.042 66.667 0.00 0.00 0.00 3.18
528 529 3.041940 CGTCGCACCACCTTCACC 61.042 66.667 0.00 0.00 0.00 4.02
529 530 2.668550 GTCGCACCACCTTCACCC 60.669 66.667 0.00 0.00 0.00 4.61
530 531 4.308458 TCGCACCACCTTCACCCG 62.308 66.667 0.00 0.00 0.00 5.28
532 533 3.948719 GCACCACCTTCACCCGGA 61.949 66.667 0.73 0.00 0.00 5.14
533 534 3.077907 CACCACCTTCACCCGGAT 58.922 61.111 0.73 0.00 0.00 4.18
534 535 1.078426 CACCACCTTCACCCGGATC 60.078 63.158 0.73 0.00 0.00 3.36
535 536 1.229529 ACCACCTTCACCCGGATCT 60.230 57.895 0.73 0.00 0.00 2.75
536 537 1.221840 CCACCTTCACCCGGATCTG 59.778 63.158 0.73 0.00 0.00 2.90
537 538 1.221840 CACCTTCACCCGGATCTGG 59.778 63.158 14.26 14.26 0.00 3.86
609 610 3.127533 GCGCCGCCACAAGAAGAT 61.128 61.111 0.00 0.00 0.00 2.40
610 611 3.093278 CGCCGCCACAAGAAGATC 58.907 61.111 0.00 0.00 0.00 2.75
611 612 1.741401 CGCCGCCACAAGAAGATCA 60.741 57.895 0.00 0.00 0.00 2.92
612 613 1.796796 GCCGCCACAAGAAGATCAC 59.203 57.895 0.00 0.00 0.00 3.06
613 614 1.648467 GCCGCCACAAGAAGATCACC 61.648 60.000 0.00 0.00 0.00 4.02
614 615 1.026718 CCGCCACAAGAAGATCACCC 61.027 60.000 0.00 0.00 0.00 4.61
615 616 0.321564 CGCCACAAGAAGATCACCCA 60.322 55.000 0.00 0.00 0.00 4.51
616 617 1.457346 GCCACAAGAAGATCACCCAG 58.543 55.000 0.00 0.00 0.00 4.45
617 618 1.952367 GCCACAAGAAGATCACCCAGG 60.952 57.143 0.00 0.00 0.00 4.45
618 619 1.457346 CACAAGAAGATCACCCAGGC 58.543 55.000 0.00 0.00 0.00 4.85
619 620 0.329596 ACAAGAAGATCACCCAGGCC 59.670 55.000 0.00 0.00 0.00 5.19
620 621 0.622665 CAAGAAGATCACCCAGGCCT 59.377 55.000 0.00 0.00 0.00 5.19
621 622 0.622665 AAGAAGATCACCCAGGCCTG 59.377 55.000 26.87 26.87 0.00 4.85
622 623 1.452833 GAAGATCACCCAGGCCTGC 60.453 63.158 28.39 12.54 0.00 4.85
623 624 3.335356 AAGATCACCCAGGCCTGCG 62.335 63.158 28.39 22.15 0.00 5.18
624 625 4.864334 GATCACCCAGGCCTGCGG 62.864 72.222 28.39 28.68 0.00 5.69
693 694 0.827368 AGGAGAAGAAGGTGATCGGC 59.173 55.000 0.00 0.00 0.00 5.54
744 755 0.315568 GAGAACGCCTCGCATATCCT 59.684 55.000 0.00 0.00 31.32 3.24
745 756 0.032678 AGAACGCCTCGCATATCCTG 59.967 55.000 0.00 0.00 0.00 3.86
746 757 0.032130 GAACGCCTCGCATATCCTGA 59.968 55.000 0.00 0.00 0.00 3.86
747 758 0.681733 AACGCCTCGCATATCCTGAT 59.318 50.000 0.00 0.00 0.00 2.90
748 759 0.244994 ACGCCTCGCATATCCTGATC 59.755 55.000 0.00 0.00 0.00 2.92
749 760 0.799917 CGCCTCGCATATCCTGATCG 60.800 60.000 0.00 0.00 0.00 3.69
750 761 0.528017 GCCTCGCATATCCTGATCGA 59.472 55.000 0.00 0.00 0.00 3.59
751 762 1.468908 GCCTCGCATATCCTGATCGAG 60.469 57.143 8.82 8.82 44.21 4.04
753 764 1.200948 CTCGCATATCCTGATCGAGCA 59.799 52.381 2.19 2.19 39.82 4.26
755 766 2.232208 TCGCATATCCTGATCGAGCATT 59.768 45.455 2.72 0.00 0.00 3.56
756 767 2.998670 CGCATATCCTGATCGAGCATTT 59.001 45.455 2.72 0.00 0.00 2.32
757 768 3.061831 CGCATATCCTGATCGAGCATTTC 59.938 47.826 2.72 0.00 0.00 2.17
758 769 3.373439 GCATATCCTGATCGAGCATTTCC 59.627 47.826 2.72 0.00 0.00 3.13
759 770 2.557920 ATCCTGATCGAGCATTTCCC 57.442 50.000 2.72 0.00 0.00 3.97
800 811 3.419922 GTCGCGTATGTAAAGTACCATCG 59.580 47.826 5.77 0.00 0.00 3.84
804 815 5.486706 GCGTATGTAAAGTACCATCGTTTG 58.513 41.667 0.00 0.00 0.00 2.93
877 4731 1.940613 GAAACAGGCACGAAACTCTGT 59.059 47.619 0.00 0.00 41.59 3.41
879 4733 0.249911 ACAGGCACGAAACTCTGTCC 60.250 55.000 0.00 0.00 35.83 4.02
892 4768 4.100084 TGTCCGATGGCAGGCAGG 62.100 66.667 1.89 0.00 0.00 4.85
902 4778 1.525535 GCAGGCAGGCATCCTACAG 60.526 63.158 0.00 0.00 31.52 2.74
908 4784 4.408270 CAGGCAGGCATCCTACAGATATAT 59.592 45.833 0.00 0.00 32.37 0.86
912 4788 6.098982 GGCAGGCATCCTACAGATATATACTT 59.901 42.308 0.00 0.00 32.37 2.24
942 4824 3.555324 TCCACGCCAGCAGAACCA 61.555 61.111 0.00 0.00 0.00 3.67
1060 4942 1.419107 GCTGTTTCGCCGCTACTACC 61.419 60.000 0.00 0.00 0.00 3.18
1070 4952 3.454573 CTACTACCACCGCCGCCA 61.455 66.667 0.00 0.00 0.00 5.69
1113 4995 2.754658 GACGCCGAGGAGGAGGAA 60.755 66.667 0.00 0.00 44.78 3.36
1114 4996 2.756283 ACGCCGAGGAGGAGGAAG 60.756 66.667 0.00 0.00 44.78 3.46
1117 4999 1.605058 CGCCGAGGAGGAGGAAGAAA 61.605 60.000 0.00 0.00 45.00 2.52
1124 5006 2.709397 AGGAGGAGGAAGAAACCGAAAA 59.291 45.455 0.00 0.00 34.73 2.29
1218 5109 3.075641 GACGTGGGGGAGGAGGAC 61.076 72.222 0.00 0.00 0.00 3.85
1279 5170 1.761174 GAGGGGTGCAAGAAGGTGA 59.239 57.895 0.00 0.00 0.00 4.02
1281 5172 0.329596 AGGGGTGCAAGAAGGTGATC 59.670 55.000 0.00 0.00 0.00 2.92
1282 5173 0.681243 GGGGTGCAAGAAGGTGATCC 60.681 60.000 0.00 0.00 0.00 3.36
1284 5175 1.680249 GGGTGCAAGAAGGTGATCCTC 60.680 57.143 0.00 0.00 44.35 3.71
1285 5176 1.003580 GGTGCAAGAAGGTGATCCTCA 59.996 52.381 0.00 0.00 44.35 3.86
1301 5192 0.246086 CTCAAGTGCGAGGAAGAGCT 59.754 55.000 0.00 0.00 0.00 4.09
1401 5292 2.361737 GGCTGGAAGGACTTGGCC 60.362 66.667 0.00 0.00 0.00 5.36
1443 5334 4.396854 GCCGGAAGCTGTACGTAG 57.603 61.111 5.05 0.00 38.99 3.51
1474 5370 6.488006 CCATGCTAACTAATTTGCTCCACTAT 59.512 38.462 0.00 0.00 37.44 2.12
1475 5371 7.661437 CCATGCTAACTAATTTGCTCCACTATA 59.339 37.037 0.00 0.00 37.44 1.31
1476 5372 8.499162 CATGCTAACTAATTTGCTCCACTATAC 58.501 37.037 0.00 0.00 37.44 1.47
1478 5374 6.990349 GCTAACTAATTTGCTCCACTATACCA 59.010 38.462 0.00 0.00 34.22 3.25
1479 5375 7.661847 GCTAACTAATTTGCTCCACTATACCAT 59.338 37.037 0.00 0.00 34.22 3.55
1480 5376 9.209175 CTAACTAATTTGCTCCACTATACCATC 57.791 37.037 0.00 0.00 0.00 3.51
1481 5377 6.534634 ACTAATTTGCTCCACTATACCATCC 58.465 40.000 0.00 0.00 0.00 3.51
1482 5378 5.653255 AATTTGCTCCACTATACCATCCT 57.347 39.130 0.00 0.00 0.00 3.24
1483 5379 4.689612 TTTGCTCCACTATACCATCCTC 57.310 45.455 0.00 0.00 0.00 3.71
1484 5380 3.328535 TGCTCCACTATACCATCCTCA 57.671 47.619 0.00 0.00 0.00 3.86
1485 5381 3.861846 TGCTCCACTATACCATCCTCAT 58.138 45.455 0.00 0.00 0.00 2.90
1501 5397 4.119155 TCCTCATTCCCCCAAATAACTCT 58.881 43.478 0.00 0.00 0.00 3.24
1504 5400 6.392842 TCCTCATTCCCCCAAATAACTCTAAT 59.607 38.462 0.00 0.00 0.00 1.73
1505 5401 7.069344 CCTCATTCCCCCAAATAACTCTAATT 58.931 38.462 0.00 0.00 0.00 1.40
1506 5402 7.565029 CCTCATTCCCCCAAATAACTCTAATTT 59.435 37.037 0.00 0.00 0.00 1.82
1507 5403 8.305046 TCATTCCCCCAAATAACTCTAATTTG 57.695 34.615 2.33 2.33 41.77 2.32
1508 5404 6.538945 TTCCCCCAAATAACTCTAATTTGC 57.461 37.500 3.57 0.00 41.11 3.68
1509 5405 5.837829 TCCCCCAAATAACTCTAATTTGCT 58.162 37.500 3.57 0.00 41.11 3.91
1510 5406 5.891551 TCCCCCAAATAACTCTAATTTGCTC 59.108 40.000 3.57 0.00 41.11 4.26
1513 5409 7.559897 CCCCCAAATAACTCTAATTTGCTCTTA 59.440 37.037 3.57 0.00 41.11 2.10
1565 5476 0.944788 GCGAGTTAGCCGCCTATTCC 60.945 60.000 0.00 0.00 46.22 3.01
1574 5485 1.345715 CCGCCTATTCCCTCAGGGTT 61.346 60.000 10.50 0.82 44.74 4.11
1575 5486 0.179045 CGCCTATTCCCTCAGGGTTG 60.179 60.000 10.50 0.00 44.74 3.77
1576 5487 0.183731 GCCTATTCCCTCAGGGTTGG 59.816 60.000 10.50 9.04 44.74 3.77
1577 5488 1.596496 CCTATTCCCTCAGGGTTGGT 58.404 55.000 10.50 0.00 44.74 3.67
1579 5490 2.092375 CCTATTCCCTCAGGGTTGGTTC 60.092 54.545 10.50 0.00 44.74 3.62
1580 5491 0.328258 ATTCCCTCAGGGTTGGTTCG 59.672 55.000 10.50 0.00 44.74 3.95
1582 5493 2.750350 CCTCAGGGTTGGTTCGCT 59.250 61.111 0.00 0.00 0.00 4.93
1585 5496 0.593128 CTCAGGGTTGGTTCGCTTTG 59.407 55.000 0.00 0.00 0.00 2.77
1587 5498 1.152756 AGGGTTGGTTCGCTTTGCT 60.153 52.632 0.00 0.00 0.00 3.91
1588 5499 0.755327 AGGGTTGGTTCGCTTTGCTT 60.755 50.000 0.00 0.00 0.00 3.91
1589 5500 0.955905 GGGTTGGTTCGCTTTGCTTA 59.044 50.000 0.00 0.00 0.00 3.09
1590 5501 1.335597 GGGTTGGTTCGCTTTGCTTAC 60.336 52.381 0.00 0.00 0.00 2.34
1592 5503 2.604614 GGTTGGTTCGCTTTGCTTACTG 60.605 50.000 0.00 0.00 0.00 2.74
1593 5504 0.591170 TGGTTCGCTTTGCTTACTGC 59.409 50.000 0.00 0.00 43.25 4.40
1597 5508 1.877637 TCGCTTTGCTTACTGCTTCA 58.122 45.000 0.00 0.00 43.37 3.02
1599 5510 2.416547 TCGCTTTGCTTACTGCTTCATC 59.583 45.455 0.00 0.00 43.37 2.92
1600 5511 2.778659 GCTTTGCTTACTGCTTCATCG 58.221 47.619 0.00 0.00 43.37 3.84
1601 5512 2.778659 CTTTGCTTACTGCTTCATCGC 58.221 47.619 0.00 0.00 43.37 4.58
1602 5513 0.721154 TTGCTTACTGCTTCATCGCG 59.279 50.000 0.00 0.00 43.37 5.87
1605 5516 1.359848 CTTACTGCTTCATCGCGGTT 58.640 50.000 6.13 0.00 46.85 4.44
1607 5518 2.203800 TACTGCTTCATCGCGGTTAG 57.796 50.000 6.13 0.00 46.85 2.34
1609 5520 1.337823 ACTGCTTCATCGCGGTTAGTT 60.338 47.619 6.13 0.00 46.85 2.24
1610 5521 2.094390 ACTGCTTCATCGCGGTTAGTTA 60.094 45.455 6.13 0.00 46.85 2.24
1745 5678 1.347221 GTTCGGCGAAATGCTACGG 59.653 57.895 25.48 0.00 45.43 4.02
1764 5697 1.405821 GGCGAGATCGAGGAGAAAAGA 59.594 52.381 6.39 0.00 43.02 2.52
1837 5770 3.611674 TCAAGCACGGCGACCAGA 61.612 61.111 16.62 1.40 0.00 3.86
1866 5799 4.753662 ACCGCCTGCTCCGACCTA 62.754 66.667 0.00 0.00 0.00 3.08
1898 5831 1.228521 TGGACCGTAACGACCTCCA 60.229 57.895 0.00 0.00 0.00 3.86
1926 5859 0.107606 TCCTCTTCTACGAGCGAGCT 60.108 55.000 0.00 0.00 0.00 4.09
1947 5880 2.758089 CGAGTACTACGGCACCGCT 61.758 63.158 9.43 0.00 44.19 5.52
1983 5916 2.037136 CCGCTTCTGCAGGTTCAGG 61.037 63.158 15.13 7.76 39.64 3.86
2007 5940 2.167281 TCAGCTTGTCACCTATCTGCTC 59.833 50.000 0.00 0.00 0.00 4.26
2010 5943 0.894835 TTGTCACCTATCTGCTCGCA 59.105 50.000 0.00 0.00 0.00 5.10
2014 5947 1.009829 CACCTATCTGCTCGCAAACC 58.990 55.000 0.00 0.00 0.00 3.27
2027 5960 1.795170 GCAAACCAAGAGGCGCTTCA 61.795 55.000 22.42 0.00 39.06 3.02
2051 5984 0.611618 AATGGAGCGTTGCCCATTCA 60.612 50.000 14.68 0.00 41.87 2.57
2162 6095 1.084370 GCGCACGACTATCAGCCTTT 61.084 55.000 0.30 0.00 0.00 3.11
2240 6188 7.703197 TGTATCAAACACGTAGTATGTGTATGG 59.297 37.037 24.83 17.50 46.74 2.74
2254 6202 9.958180 AGTATGTGTATGGCTTGCATATATTTA 57.042 29.630 10.03 0.00 29.45 1.40
2324 6272 7.870954 CACGTGGCTTATGATACTTAAAGGATA 59.129 37.037 7.95 0.00 0.00 2.59
2365 6313 6.243216 TGGAAGTTTTAACTCCGGCTATAT 57.757 37.500 0.00 0.00 38.57 0.86
2366 6314 7.364149 TGGAAGTTTTAACTCCGGCTATATA 57.636 36.000 0.00 0.00 38.57 0.86
2367 6315 7.970102 TGGAAGTTTTAACTCCGGCTATATAT 58.030 34.615 0.00 0.00 38.57 0.86
2385 6333 2.611225 ATTCTCAACGATCCAGCTCC 57.389 50.000 0.00 0.00 0.00 4.70
2405 6353 3.451178 TCCTAGGAGTGCAATCTACCAAC 59.549 47.826 14.60 0.00 0.00 3.77
2419 6367 4.038080 CAACTGGTTTCGGCGGCC 62.038 66.667 9.54 9.54 0.00 6.13
2429 6377 4.545706 CGGCGGCCAATCCTAGCA 62.546 66.667 20.71 0.00 0.00 3.49
2441 6389 5.358160 GCCAATCCTAGCATAGTTTGTTTCT 59.642 40.000 0.00 0.00 36.82 2.52
2461 6409 5.326200 TCTAGGAGACGAAAATGGAAGTC 57.674 43.478 0.00 0.00 0.00 3.01
2486 6434 2.025584 CGGCTATAGTCGCGCACA 59.974 61.111 14.66 0.00 35.94 4.57
2492 6440 2.259618 CTATAGTCGCGCACAGTTTGT 58.740 47.619 8.75 0.00 0.00 2.83
2740 6689 1.107114 GTGATCCTCTCTCGCTTCCA 58.893 55.000 0.00 0.00 0.00 3.53
2751 6700 3.637273 GCTTCCACACCCCTCCGT 61.637 66.667 0.00 0.00 0.00 4.69
2876 6930 4.821589 CCACCGCCGCTTCTCCTC 62.822 72.222 0.00 0.00 0.00 3.71
2877 6931 3.764466 CACCGCCGCTTCTCCTCT 61.764 66.667 0.00 0.00 0.00 3.69
2881 6935 2.188207 GCCGCTTCTCCTCTTCCC 59.812 66.667 0.00 0.00 0.00 3.97
2903 6957 2.359967 GCCGCCACTACTTCCCTCT 61.360 63.158 0.00 0.00 0.00 3.69
2989 7044 0.485543 CCCAAAACCCTAACCACCCT 59.514 55.000 0.00 0.00 0.00 4.34
3009 7064 1.377725 CGTCTCCATGGCCAAAGCT 60.378 57.895 10.96 0.00 39.73 3.74
3015 7070 3.755628 ATGGCCAAAGCTGCTGCG 61.756 61.111 10.96 0.00 45.42 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.053145 CGCTCTAGATGCCTTCAAGTTATT 58.947 41.667 0.00 0.00 0.00 1.40
2 3 3.447586 ACGCTCTAGATGCCTTCAAGTTA 59.552 43.478 0.00 0.00 0.00 2.24
5 6 2.468831 GACGCTCTAGATGCCTTCAAG 58.531 52.381 0.00 0.00 0.00 3.02
6 7 1.202302 CGACGCTCTAGATGCCTTCAA 60.202 52.381 0.00 0.00 0.00 2.69
7 8 0.382158 CGACGCTCTAGATGCCTTCA 59.618 55.000 0.00 0.00 0.00 3.02
8 9 0.663688 TCGACGCTCTAGATGCCTTC 59.336 55.000 0.00 0.00 0.00 3.46
9 10 1.268352 GATCGACGCTCTAGATGCCTT 59.732 52.381 0.00 0.00 0.00 4.35
10 11 0.878416 GATCGACGCTCTAGATGCCT 59.122 55.000 0.00 0.00 0.00 4.75
11 12 0.878416 AGATCGACGCTCTAGATGCC 59.122 55.000 0.00 0.00 0.00 4.40
12 13 1.463363 CGAGATCGACGCTCTAGATGC 60.463 57.143 13.38 0.00 43.02 3.91
13 14 1.127766 CCGAGATCGACGCTCTAGATG 59.872 57.143 9.93 0.00 43.02 2.90
14 15 1.434555 CCGAGATCGACGCTCTAGAT 58.565 55.000 9.93 0.00 43.02 1.98
15 16 0.600518 CCCGAGATCGACGCTCTAGA 60.601 60.000 9.93 0.00 43.02 2.43
16 17 0.881159 ACCCGAGATCGACGCTCTAG 60.881 60.000 13.38 1.46 43.02 2.43
17 18 0.879400 GACCCGAGATCGACGCTCTA 60.879 60.000 13.38 0.00 43.02 2.43
18 19 2.124653 ACCCGAGATCGACGCTCT 60.125 61.111 13.38 0.00 43.02 4.09
19 20 2.328639 GACCCGAGATCGACGCTC 59.671 66.667 3.31 6.98 43.02 5.03
20 21 3.574445 CGACCCGAGATCGACGCT 61.574 66.667 3.31 0.00 42.25 5.07
21 22 2.040213 TAACGACCCGAGATCGACGC 62.040 60.000 3.31 0.00 42.25 5.19
22 23 0.315706 GTAACGACCCGAGATCGACG 60.316 60.000 3.31 8.93 42.25 5.12
23 24 0.729116 TGTAACGACCCGAGATCGAC 59.271 55.000 3.31 0.00 42.25 4.20
24 25 1.012086 CTGTAACGACCCGAGATCGA 58.988 55.000 3.31 0.00 42.25 3.59
25 26 1.003759 CTCTGTAACGACCCGAGATCG 60.004 57.143 0.00 0.00 45.17 3.69
26 27 2.015587 ACTCTGTAACGACCCGAGATC 58.984 52.381 0.00 0.00 0.00 2.75
27 28 2.015587 GACTCTGTAACGACCCGAGAT 58.984 52.381 0.00 0.00 0.00 2.75
28 29 1.271001 TGACTCTGTAACGACCCGAGA 60.271 52.381 0.00 0.00 0.00 4.04
29 30 1.162698 TGACTCTGTAACGACCCGAG 58.837 55.000 0.00 0.00 0.00 4.63
30 31 1.830279 ATGACTCTGTAACGACCCGA 58.170 50.000 0.00 0.00 0.00 5.14
31 32 2.033049 CCTATGACTCTGTAACGACCCG 59.967 54.545 0.00 0.00 0.00 5.28
32 33 2.361438 CCCTATGACTCTGTAACGACCC 59.639 54.545 0.00 0.00 0.00 4.46
33 34 3.022406 ACCCTATGACTCTGTAACGACC 58.978 50.000 0.00 0.00 0.00 4.79
34 35 4.715527 AACCCTATGACTCTGTAACGAC 57.284 45.455 0.00 0.00 0.00 4.34
35 36 4.159135 GGAAACCCTATGACTCTGTAACGA 59.841 45.833 0.00 0.00 0.00 3.85
36 37 4.430908 GGAAACCCTATGACTCTGTAACG 58.569 47.826 0.00 0.00 0.00 3.18
53 54 3.622627 CCTCTACGTATCGAGGGAAAC 57.377 52.381 18.74 0.00 42.46 2.78
58 59 0.875728 CTGCCCTCTACGTATCGAGG 59.124 60.000 19.31 19.31 45.10 4.63
59 60 1.264557 CACTGCCCTCTACGTATCGAG 59.735 57.143 0.00 0.00 0.00 4.04
60 61 1.306148 CACTGCCCTCTACGTATCGA 58.694 55.000 0.00 0.00 0.00 3.59
61 62 0.311165 CCACTGCCCTCTACGTATCG 59.689 60.000 0.00 0.00 0.00 2.92
62 63 0.674534 CCCACTGCCCTCTACGTATC 59.325 60.000 0.00 0.00 0.00 2.24
63 64 0.759436 CCCCACTGCCCTCTACGTAT 60.759 60.000 0.00 0.00 0.00 3.06
64 65 1.380785 CCCCACTGCCCTCTACGTA 60.381 63.158 0.00 0.00 0.00 3.57
65 66 2.683933 CCCCACTGCCCTCTACGT 60.684 66.667 0.00 0.00 0.00 3.57
66 67 2.363795 TCCCCACTGCCCTCTACG 60.364 66.667 0.00 0.00 0.00 3.51
67 68 2.066999 CCTCCCCACTGCCCTCTAC 61.067 68.421 0.00 0.00 0.00 2.59
68 69 2.368594 CCTCCCCACTGCCCTCTA 59.631 66.667 0.00 0.00 0.00 2.43
69 70 4.748798 CCCTCCCCACTGCCCTCT 62.749 72.222 0.00 0.00 0.00 3.69
72 73 4.752594 TACCCCTCCCCACTGCCC 62.753 72.222 0.00 0.00 0.00 5.36
73 74 3.408853 GTACCCCTCCCCACTGCC 61.409 72.222 0.00 0.00 0.00 4.85
74 75 2.609610 TGTACCCCTCCCCACTGC 60.610 66.667 0.00 0.00 0.00 4.40
75 76 2.298661 GGTGTACCCCTCCCCACTG 61.299 68.421 0.00 0.00 0.00 3.66
76 77 2.124312 GGTGTACCCCTCCCCACT 59.876 66.667 0.00 0.00 0.00 4.00
77 78 2.124312 AGGTGTACCCCTCCCCAC 59.876 66.667 0.00 0.00 36.42 4.61
78 79 2.124085 CAGGTGTACCCCTCCCCA 59.876 66.667 0.00 0.00 36.42 4.96
79 80 1.689582 CTCAGGTGTACCCCTCCCC 60.690 68.421 0.00 0.00 36.42 4.81
80 81 1.689582 CCTCAGGTGTACCCCTCCC 60.690 68.421 0.00 0.00 36.42 4.30
81 82 2.368011 GCCTCAGGTGTACCCCTCC 61.368 68.421 0.00 0.00 36.42 4.30
82 83 2.368011 GGCCTCAGGTGTACCCCTC 61.368 68.421 0.00 0.00 36.42 4.30
83 84 2.285442 GGCCTCAGGTGTACCCCT 60.285 66.667 0.00 0.00 36.42 4.79
84 85 1.571773 AATGGCCTCAGGTGTACCCC 61.572 60.000 3.32 0.00 36.42 4.95
85 86 0.107165 GAATGGCCTCAGGTGTACCC 60.107 60.000 3.32 0.00 36.42 3.69
86 87 0.618458 TGAATGGCCTCAGGTGTACC 59.382 55.000 3.32 0.00 0.00 3.34
87 88 2.029838 CTGAATGGCCTCAGGTGTAC 57.970 55.000 13.10 0.00 39.39 2.90
93 94 0.914644 TCCTTCCTGAATGGCCTCAG 59.085 55.000 13.83 13.83 42.19 3.35
94 95 0.914644 CTCCTTCCTGAATGGCCTCA 59.085 55.000 3.32 0.00 35.26 3.86
95 96 1.140652 CTCTCCTTCCTGAATGGCCTC 59.859 57.143 3.32 0.00 35.26 4.70
96 97 1.211456 CTCTCCTTCCTGAATGGCCT 58.789 55.000 3.32 0.00 35.26 5.19
97 98 0.182299 CCTCTCCTTCCTGAATGGCC 59.818 60.000 0.00 0.00 35.26 5.36
98 99 0.465278 GCCTCTCCTTCCTGAATGGC 60.465 60.000 0.00 0.00 35.26 4.40
99 100 0.179062 CGCCTCTCCTTCCTGAATGG 60.179 60.000 0.00 0.00 37.10 3.16
100 101 0.179062 CCGCCTCTCCTTCCTGAATG 60.179 60.000 0.00 0.00 0.00 2.67
101 102 1.977293 GCCGCCTCTCCTTCCTGAAT 61.977 60.000 0.00 0.00 0.00 2.57
102 103 2.660064 GCCGCCTCTCCTTCCTGAA 61.660 63.158 0.00 0.00 0.00 3.02
103 104 3.077556 GCCGCCTCTCCTTCCTGA 61.078 66.667 0.00 0.00 0.00 3.86
104 105 3.393970 TGCCGCCTCTCCTTCCTG 61.394 66.667 0.00 0.00 0.00 3.86
105 106 3.394836 GTGCCGCCTCTCCTTCCT 61.395 66.667 0.00 0.00 0.00 3.36
106 107 4.475135 GGTGCCGCCTCTCCTTCC 62.475 72.222 0.00 0.00 0.00 3.46
107 108 3.394836 AGGTGCCGCCTCTCCTTC 61.395 66.667 0.00 0.00 46.96 3.46
108 109 3.710722 CAGGTGCCGCCTCTCCTT 61.711 66.667 0.00 0.00 46.96 3.36
111 112 4.704833 TTGCAGGTGCCGCCTCTC 62.705 66.667 0.00 0.00 46.96 3.20
112 113 4.711949 CTTGCAGGTGCCGCCTCT 62.712 66.667 0.00 0.00 46.96 3.69
116 117 4.487412 GATGCTTGCAGGTGCCGC 62.487 66.667 0.87 3.09 41.18 6.53
117 118 3.057548 TGATGCTTGCAGGTGCCG 61.058 61.111 0.87 0.00 41.18 5.69
118 119 1.975407 AGTGATGCTTGCAGGTGCC 60.975 57.895 0.87 0.00 41.18 5.01
119 120 1.211969 CAGTGATGCTTGCAGGTGC 59.788 57.895 0.87 0.00 42.50 5.01
120 121 1.211969 GCAGTGATGCTTGCAGGTG 59.788 57.895 0.87 0.00 0.00 4.00
121 122 2.330372 CGCAGTGATGCTTGCAGGT 61.330 57.895 0.87 0.00 0.00 4.00
122 123 2.330372 ACGCAGTGATGCTTGCAGG 61.330 57.895 0.87 0.00 42.51 4.85
123 124 3.260931 ACGCAGTGATGCTTGCAG 58.739 55.556 0.87 0.00 42.51 4.41
137 138 4.856607 CTTCTCCGGCTCCGACGC 62.857 72.222 10.28 0.00 42.83 5.19
138 139 4.856607 GCTTCTCCGGCTCCGACG 62.857 72.222 10.28 0.34 42.83 5.12
139 140 4.516195 GGCTTCTCCGGCTCCGAC 62.516 72.222 10.28 0.00 42.83 4.79
148 149 2.635427 AGAAATCCCTATCGGCTTCTCC 59.365 50.000 0.00 0.00 31.31 3.71
149 150 3.306433 GGAGAAATCCCTATCGGCTTCTC 60.306 52.174 10.27 10.27 43.25 2.87
150 151 2.635427 GGAGAAATCCCTATCGGCTTCT 59.365 50.000 0.00 0.00 36.65 2.85
151 152 2.610727 CGGAGAAATCCCTATCGGCTTC 60.611 54.545 0.00 0.00 0.00 3.86
152 153 1.344763 CGGAGAAATCCCTATCGGCTT 59.655 52.381 0.00 0.00 0.00 4.35
153 154 0.969894 CGGAGAAATCCCTATCGGCT 59.030 55.000 0.00 0.00 0.00 5.52
154 155 0.966920 TCGGAGAAATCCCTATCGGC 59.033 55.000 0.00 0.00 0.00 5.54
155 156 1.272769 GGTCGGAGAAATCCCTATCGG 59.727 57.143 0.00 0.00 39.69 4.18
156 157 2.240279 AGGTCGGAGAAATCCCTATCG 58.760 52.381 0.00 0.00 39.69 2.92
157 158 5.803237 TTAAGGTCGGAGAAATCCCTATC 57.197 43.478 0.00 0.00 39.69 2.08
158 159 6.570654 TTTTAAGGTCGGAGAAATCCCTAT 57.429 37.500 0.00 0.00 39.69 2.57
159 160 6.377245 TTTTTAAGGTCGGAGAAATCCCTA 57.623 37.500 0.00 0.00 39.69 3.53
160 161 4.921644 TTTTAAGGTCGGAGAAATCCCT 57.078 40.909 0.00 0.00 39.69 4.20
180 181 4.403734 ACGGATTATCAGGTGGTGTTTTT 58.596 39.130 0.00 0.00 0.00 1.94
181 182 4.028993 ACGGATTATCAGGTGGTGTTTT 57.971 40.909 0.00 0.00 0.00 2.43
182 183 3.713826 ACGGATTATCAGGTGGTGTTT 57.286 42.857 0.00 0.00 0.00 2.83
183 184 3.773119 ACTACGGATTATCAGGTGGTGTT 59.227 43.478 4.45 0.00 0.00 3.32
184 185 3.132289 CACTACGGATTATCAGGTGGTGT 59.868 47.826 17.36 5.24 37.18 4.16
185 186 3.717707 CACTACGGATTATCAGGTGGTG 58.282 50.000 14.01 14.01 35.95 4.17
186 187 2.102588 GCACTACGGATTATCAGGTGGT 59.897 50.000 0.00 0.00 0.00 4.16
187 188 2.365617 AGCACTACGGATTATCAGGTGG 59.634 50.000 0.00 0.00 0.00 4.61
188 189 3.553096 GGAGCACTACGGATTATCAGGTG 60.553 52.174 0.00 0.00 0.00 4.00
189 190 2.628657 GGAGCACTACGGATTATCAGGT 59.371 50.000 0.00 0.00 0.00 4.00
190 191 2.628178 TGGAGCACTACGGATTATCAGG 59.372 50.000 0.00 0.00 0.00 3.86
191 192 3.553096 GGTGGAGCACTACGGATTATCAG 60.553 52.174 0.00 0.00 34.40 2.90
192 193 2.364324 GGTGGAGCACTACGGATTATCA 59.636 50.000 0.00 0.00 34.40 2.15
193 194 2.288886 GGGTGGAGCACTACGGATTATC 60.289 54.545 0.00 0.00 34.40 1.75
194 195 1.692519 GGGTGGAGCACTACGGATTAT 59.307 52.381 0.00 0.00 34.40 1.28
195 196 1.117150 GGGTGGAGCACTACGGATTA 58.883 55.000 0.00 0.00 34.40 1.75
196 197 0.907704 TGGGTGGAGCACTACGGATT 60.908 55.000 0.00 0.00 34.40 3.01
197 198 0.907704 TTGGGTGGAGCACTACGGAT 60.908 55.000 0.00 0.00 34.40 4.18
198 199 1.534476 TTGGGTGGAGCACTACGGA 60.534 57.895 0.00 0.00 34.40 4.69
199 200 1.375523 GTTGGGTGGAGCACTACGG 60.376 63.158 0.00 0.00 34.40 4.02
200 201 0.034896 AAGTTGGGTGGAGCACTACG 59.965 55.000 0.00 0.00 34.40 3.51
201 202 1.523758 CAAGTTGGGTGGAGCACTAC 58.476 55.000 0.00 0.00 34.40 2.73
202 203 0.250727 GCAAGTTGGGTGGAGCACTA 60.251 55.000 4.75 0.00 34.40 2.74
203 204 1.529244 GCAAGTTGGGTGGAGCACT 60.529 57.895 4.75 0.00 34.40 4.40
204 205 2.564721 GGCAAGTTGGGTGGAGCAC 61.565 63.158 4.75 0.00 0.00 4.40
205 206 2.203480 GGCAAGTTGGGTGGAGCA 60.203 61.111 4.75 0.00 0.00 4.26
206 207 1.598701 GATGGCAAGTTGGGTGGAGC 61.599 60.000 4.75 0.00 0.00 4.70
207 208 0.967380 GGATGGCAAGTTGGGTGGAG 60.967 60.000 4.75 0.00 0.00 3.86
208 209 1.076549 GGATGGCAAGTTGGGTGGA 59.923 57.895 4.75 0.00 0.00 4.02
209 210 0.615544 ATGGATGGCAAGTTGGGTGG 60.616 55.000 4.75 0.00 0.00 4.61
210 211 0.819582 GATGGATGGCAAGTTGGGTG 59.180 55.000 4.75 0.00 0.00 4.61
211 212 0.409092 TGATGGATGGCAAGTTGGGT 59.591 50.000 4.75 0.00 0.00 4.51
212 213 1.108776 CTGATGGATGGCAAGTTGGG 58.891 55.000 4.75 0.00 0.00 4.12
213 214 0.458669 GCTGATGGATGGCAAGTTGG 59.541 55.000 4.75 0.00 0.00 3.77
214 215 1.179152 TGCTGATGGATGGCAAGTTG 58.821 50.000 0.00 0.00 32.79 3.16
215 216 1.754803 CATGCTGATGGATGGCAAGTT 59.245 47.619 0.00 0.00 38.20 2.66
216 217 1.399714 CATGCTGATGGATGGCAAGT 58.600 50.000 0.00 0.00 38.20 3.16
217 218 0.032130 GCATGCTGATGGATGGCAAG 59.968 55.000 11.37 0.00 41.50 4.01
218 219 0.684805 TGCATGCTGATGGATGGCAA 60.685 50.000 20.33 0.00 41.50 4.52
219 220 1.076632 TGCATGCTGATGGATGGCA 60.077 52.632 20.33 0.00 41.50 4.92
220 221 1.362717 GTGCATGCTGATGGATGGC 59.637 57.895 20.33 0.00 41.50 4.40
221 222 0.753848 TGGTGCATGCTGATGGATGG 60.754 55.000 20.33 0.00 41.50 3.51
222 223 0.384309 GTGGTGCATGCTGATGGATG 59.616 55.000 20.33 0.00 43.62 3.51
223 224 0.754217 GGTGGTGCATGCTGATGGAT 60.754 55.000 20.33 0.00 31.82 3.41
224 225 1.378911 GGTGGTGCATGCTGATGGA 60.379 57.895 20.33 0.00 0.00 3.41
225 226 1.679641 TGGTGGTGCATGCTGATGG 60.680 57.895 20.33 0.00 0.00 3.51
226 227 1.509463 GTGGTGGTGCATGCTGATG 59.491 57.895 20.33 0.00 0.00 3.07
227 228 2.042259 CGTGGTGGTGCATGCTGAT 61.042 57.895 20.33 0.00 0.00 2.90
228 229 2.669229 CGTGGTGGTGCATGCTGA 60.669 61.111 20.33 0.00 0.00 4.26
229 230 3.740397 CCGTGGTGGTGCATGCTG 61.740 66.667 20.33 0.00 0.00 4.41
232 233 2.046411 TAGCCGTGGTGGTGCATG 60.046 61.111 0.00 0.00 41.21 4.06
233 234 2.046314 GTAGCCGTGGTGGTGCAT 60.046 61.111 0.00 0.00 41.21 3.96
234 235 3.108288 TTGTAGCCGTGGTGGTGCA 62.108 57.895 0.00 0.00 41.21 4.57
235 236 2.281208 TTGTAGCCGTGGTGGTGC 60.281 61.111 0.00 0.00 41.21 5.01
236 237 2.314647 CGTTGTAGCCGTGGTGGTG 61.315 63.158 0.00 0.00 41.21 4.17
237 238 2.029964 CGTTGTAGCCGTGGTGGT 59.970 61.111 0.00 0.00 41.21 4.16
238 239 3.419759 GCGTTGTAGCCGTGGTGG 61.420 66.667 0.00 0.00 42.50 4.61
246 247 1.041437 ATAGAGGAGGGCGTTGTAGC 58.959 55.000 0.00 0.00 0.00 3.58
247 248 1.269831 GCATAGAGGAGGGCGTTGTAG 60.270 57.143 0.00 0.00 0.00 2.74
248 249 0.750850 GCATAGAGGAGGGCGTTGTA 59.249 55.000 0.00 0.00 0.00 2.41
249 250 1.522569 GCATAGAGGAGGGCGTTGT 59.477 57.895 0.00 0.00 0.00 3.32
250 251 1.227674 GGCATAGAGGAGGGCGTTG 60.228 63.158 0.00 0.00 0.00 4.10
251 252 1.383248 AGGCATAGAGGAGGGCGTT 60.383 57.895 0.00 0.00 39.85 4.84
252 253 1.834822 GAGGCATAGAGGAGGGCGT 60.835 63.158 0.00 0.00 39.85 5.68
253 254 1.834378 TGAGGCATAGAGGAGGGCG 60.834 63.158 0.00 0.00 39.85 6.13
254 255 0.762461 AGTGAGGCATAGAGGAGGGC 60.762 60.000 0.00 0.00 33.90 5.19
255 256 2.685106 TAGTGAGGCATAGAGGAGGG 57.315 55.000 0.00 0.00 0.00 4.30
256 257 2.830923 CCATAGTGAGGCATAGAGGAGG 59.169 54.545 0.00 0.00 0.00 4.30
257 258 3.505386 ACCATAGTGAGGCATAGAGGAG 58.495 50.000 0.00 0.00 0.00 3.69
258 259 3.117131 TGACCATAGTGAGGCATAGAGGA 60.117 47.826 0.00 0.00 0.00 3.71
259 260 3.006323 GTGACCATAGTGAGGCATAGAGG 59.994 52.174 0.00 0.00 0.00 3.69
260 261 3.006323 GGTGACCATAGTGAGGCATAGAG 59.994 52.174 0.00 0.00 0.00 2.43
261 262 2.965831 GGTGACCATAGTGAGGCATAGA 59.034 50.000 0.00 0.00 0.00 1.98
262 263 2.700371 TGGTGACCATAGTGAGGCATAG 59.300 50.000 0.00 0.00 0.00 2.23
263 264 2.700371 CTGGTGACCATAGTGAGGCATA 59.300 50.000 4.03 0.00 30.82 3.14
264 265 1.487976 CTGGTGACCATAGTGAGGCAT 59.512 52.381 4.03 0.00 30.82 4.40
265 266 0.904649 CTGGTGACCATAGTGAGGCA 59.095 55.000 4.03 0.00 30.82 4.75
266 267 0.462759 GCTGGTGACCATAGTGAGGC 60.463 60.000 4.03 0.00 30.82 4.70
267 268 0.904649 TGCTGGTGACCATAGTGAGG 59.095 55.000 4.03 0.00 30.82 3.86
268 269 1.737029 CGTGCTGGTGACCATAGTGAG 60.737 57.143 4.03 0.00 30.82 3.51
269 270 0.246360 CGTGCTGGTGACCATAGTGA 59.754 55.000 4.03 0.00 30.82 3.41
270 271 0.246360 TCGTGCTGGTGACCATAGTG 59.754 55.000 4.03 0.00 30.82 2.74
271 272 0.532573 CTCGTGCTGGTGACCATAGT 59.467 55.000 4.03 0.00 30.82 2.12
272 273 0.179100 CCTCGTGCTGGTGACCATAG 60.179 60.000 4.03 0.00 30.82 2.23
273 274 1.897423 CCTCGTGCTGGTGACCATA 59.103 57.895 4.03 0.00 30.82 2.74
274 275 2.665000 CCTCGTGCTGGTGACCAT 59.335 61.111 4.03 0.00 30.82 3.55
275 276 4.314440 GCCTCGTGCTGGTGACCA 62.314 66.667 3.40 3.40 36.87 4.02
277 278 2.564553 CTAGGCCTCGTGCTGGTGAC 62.565 65.000 9.68 0.00 40.92 3.67
278 279 2.283604 TAGGCCTCGTGCTGGTGA 60.284 61.111 9.68 0.00 40.92 4.02
279 280 2.185350 CTAGGCCTCGTGCTGGTG 59.815 66.667 9.68 0.00 40.92 4.17
280 281 2.037367 TCTAGGCCTCGTGCTGGT 59.963 61.111 9.68 0.00 40.92 4.00
281 282 2.790791 CCTCTAGGCCTCGTGCTGG 61.791 68.421 9.68 0.00 40.92 4.85
282 283 1.323271 TTCCTCTAGGCCTCGTGCTG 61.323 60.000 9.68 0.00 40.92 4.41
283 284 0.614979 TTTCCTCTAGGCCTCGTGCT 60.615 55.000 9.68 0.00 40.92 4.40
284 285 0.179097 CTTTCCTCTAGGCCTCGTGC 60.179 60.000 9.68 0.00 40.16 5.34
285 286 1.475403 TCTTTCCTCTAGGCCTCGTG 58.525 55.000 9.68 3.36 34.44 4.35
286 287 2.233305 TTCTTTCCTCTAGGCCTCGT 57.767 50.000 9.68 0.00 34.44 4.18
287 288 3.257127 CCTATTCTTTCCTCTAGGCCTCG 59.743 52.174 9.68 1.83 34.44 4.63
288 289 3.580895 CCCTATTCTTTCCTCTAGGCCTC 59.419 52.174 9.68 0.00 34.44 4.70
289 290 3.592865 CCCTATTCTTTCCTCTAGGCCT 58.407 50.000 11.78 11.78 34.44 5.19
290 291 2.640332 CCCCTATTCTTTCCTCTAGGCC 59.360 54.545 0.00 0.00 34.44 5.19
291 292 3.325425 GTCCCCTATTCTTTCCTCTAGGC 59.675 52.174 0.00 0.00 34.44 3.93
292 293 3.574826 CGTCCCCTATTCTTTCCTCTAGG 59.425 52.174 0.00 0.00 0.00 3.02
293 294 3.574826 CCGTCCCCTATTCTTTCCTCTAG 59.425 52.174 0.00 0.00 0.00 2.43
294 295 3.573695 CCGTCCCCTATTCTTTCCTCTA 58.426 50.000 0.00 0.00 0.00 2.43
295 296 2.399580 CCGTCCCCTATTCTTTCCTCT 58.600 52.381 0.00 0.00 0.00 3.69
296 297 1.202663 GCCGTCCCCTATTCTTTCCTC 60.203 57.143 0.00 0.00 0.00 3.71
297 298 0.837940 GCCGTCCCCTATTCTTTCCT 59.162 55.000 0.00 0.00 0.00 3.36
298 299 0.532196 CGCCGTCCCCTATTCTTTCC 60.532 60.000 0.00 0.00 0.00 3.13
299 300 0.462789 TCGCCGTCCCCTATTCTTTC 59.537 55.000 0.00 0.00 0.00 2.62
300 301 0.906775 TTCGCCGTCCCCTATTCTTT 59.093 50.000 0.00 0.00 0.00 2.52
301 302 0.906775 TTTCGCCGTCCCCTATTCTT 59.093 50.000 0.00 0.00 0.00 2.52
302 303 0.177373 GTTTCGCCGTCCCCTATTCT 59.823 55.000 0.00 0.00 0.00 2.40
303 304 0.812811 GGTTTCGCCGTCCCCTATTC 60.813 60.000 0.00 0.00 0.00 1.75
304 305 1.222661 GGTTTCGCCGTCCCCTATT 59.777 57.895 0.00 0.00 0.00 1.73
305 306 2.905681 GGTTTCGCCGTCCCCTAT 59.094 61.111 0.00 0.00 0.00 2.57
316 317 2.907917 TTGTTGCCCCCGGTTTCG 60.908 61.111 0.00 0.00 0.00 3.46
317 318 2.128507 TGTTGTTGCCCCCGGTTTC 61.129 57.895 0.00 0.00 0.00 2.78
318 319 2.042843 TGTTGTTGCCCCCGGTTT 60.043 55.556 0.00 0.00 0.00 3.27
319 320 2.835895 GTGTTGTTGCCCCCGGTT 60.836 61.111 0.00 0.00 0.00 4.44
320 321 4.906537 GGTGTTGTTGCCCCCGGT 62.907 66.667 0.00 0.00 0.00 5.28
322 323 3.828694 TACGGTGTTGTTGCCCCCG 62.829 63.158 0.00 0.00 44.06 5.73
323 324 0.896479 AATACGGTGTTGTTGCCCCC 60.896 55.000 0.00 0.00 0.00 5.40
324 325 0.242555 CAATACGGTGTTGTTGCCCC 59.757 55.000 9.20 0.00 0.00 5.80
325 326 1.199097 CTCAATACGGTGTTGTTGCCC 59.801 52.381 15.76 0.00 0.00 5.36
326 327 1.401018 GCTCAATACGGTGTTGTTGCC 60.401 52.381 15.76 2.02 0.00 4.52
327 328 1.724654 CGCTCAATACGGTGTTGTTGC 60.725 52.381 15.76 17.79 0.00 4.17
328 329 1.136085 CCGCTCAATACGGTGTTGTTG 60.136 52.381 15.76 11.50 45.70 3.33
329 330 1.153353 CCGCTCAATACGGTGTTGTT 58.847 50.000 15.76 0.00 45.70 2.83
330 331 2.835605 CCGCTCAATACGGTGTTGT 58.164 52.632 15.76 0.00 45.70 3.32
337 338 0.529992 GTTCCCTCCCGCTCAATACG 60.530 60.000 0.00 0.00 0.00 3.06
338 339 0.539986 TGTTCCCTCCCGCTCAATAC 59.460 55.000 0.00 0.00 0.00 1.89
339 340 1.281419 TTGTTCCCTCCCGCTCAATA 58.719 50.000 0.00 0.00 0.00 1.90
340 341 0.625849 ATTGTTCCCTCCCGCTCAAT 59.374 50.000 0.00 0.00 0.00 2.57
341 342 0.035439 GATTGTTCCCTCCCGCTCAA 60.035 55.000 0.00 0.00 0.00 3.02
342 343 0.909610 AGATTGTTCCCTCCCGCTCA 60.910 55.000 0.00 0.00 0.00 4.26
343 344 0.179070 GAGATTGTTCCCTCCCGCTC 60.179 60.000 0.00 0.00 0.00 5.03
344 345 1.627297 GGAGATTGTTCCCTCCCGCT 61.627 60.000 0.00 0.00 42.35 5.52
345 346 1.153147 GGAGATTGTTCCCTCCCGC 60.153 63.158 0.00 0.00 42.35 6.13
346 347 1.144057 CGGAGATTGTTCCCTCCCG 59.856 63.158 0.00 0.00 44.66 5.14
347 348 1.153147 GCGGAGATTGTTCCCTCCC 60.153 63.158 0.00 0.00 44.66 4.30
348 349 1.153147 GGCGGAGATTGTTCCCTCC 60.153 63.158 0.00 0.00 44.18 4.30
349 350 1.521681 CGGCGGAGATTGTTCCCTC 60.522 63.158 0.00 0.00 33.46 4.30
350 351 2.584608 CGGCGGAGATTGTTCCCT 59.415 61.111 0.00 0.00 33.46 4.20
351 352 3.202706 GCGGCGGAGATTGTTCCC 61.203 66.667 9.78 0.00 33.46 3.97
352 353 3.202706 GGCGGCGGAGATTGTTCC 61.203 66.667 9.78 0.00 0.00 3.62
353 354 3.202706 GGGCGGCGGAGATTGTTC 61.203 66.667 9.78 0.00 0.00 3.18
354 355 3.682292 GAGGGCGGCGGAGATTGTT 62.682 63.158 9.78 0.00 0.00 2.83
355 356 4.162690 GAGGGCGGCGGAGATTGT 62.163 66.667 9.78 0.00 0.00 2.71
366 367 4.735132 TCGGTTTCTGCGAGGGCG 62.735 66.667 0.00 0.00 44.10 6.13
367 368 3.119096 GTCGGTTTCTGCGAGGGC 61.119 66.667 0.00 0.00 40.52 5.19
368 369 2.434359 GGTCGGTTTCTGCGAGGG 60.434 66.667 0.00 0.00 0.00 4.30
369 370 2.809601 CGGTCGGTTTCTGCGAGG 60.810 66.667 0.00 0.00 0.00 4.63
370 371 2.809601 CCGGTCGGTTTCTGCGAG 60.810 66.667 0.55 0.00 0.00 5.03
371 372 3.296836 TCCGGTCGGTTTCTGCGA 61.297 61.111 9.36 0.00 36.47 5.10
372 373 3.110178 GTCCGGTCGGTTTCTGCG 61.110 66.667 9.36 0.00 36.47 5.18
373 374 3.110178 CGTCCGGTCGGTTTCTGC 61.110 66.667 13.56 0.00 36.47 4.26
374 375 3.110178 GCGTCCGGTCGGTTTCTG 61.110 66.667 22.18 0.00 36.47 3.02
375 376 4.712425 CGCGTCCGGTCGGTTTCT 62.712 66.667 22.18 0.00 36.47 2.52
376 377 4.705519 TCGCGTCCGGTCGGTTTC 62.706 66.667 22.18 4.90 36.47 2.78
391 392 4.712425 GTGTGTCCCCGACGGTCG 62.712 72.222 22.88 22.88 40.07 4.79
392 393 4.368543 GGTGTGTCCCCGACGGTC 62.369 72.222 13.94 0.00 34.95 4.79
394 395 4.373116 CTGGTGTGTCCCCGACGG 62.373 72.222 6.99 6.99 34.95 4.79
395 396 4.373116 CCTGGTGTGTCCCCGACG 62.373 72.222 0.00 0.00 34.95 5.12
396 397 4.699522 GCCTGGTGTGTCCCCGAC 62.700 72.222 0.00 0.00 34.77 4.79
401 402 2.609610 TAGGGGCCTGGTGTGTCC 60.610 66.667 0.84 0.00 0.00 4.02
402 403 1.489560 AAGTAGGGGCCTGGTGTGTC 61.490 60.000 0.84 0.00 0.00 3.67
403 404 1.463410 AAGTAGGGGCCTGGTGTGT 60.463 57.895 0.84 0.00 0.00 3.72
404 405 1.299976 GAAGTAGGGGCCTGGTGTG 59.700 63.158 0.84 0.00 0.00 3.82
405 406 1.923909 GGAAGTAGGGGCCTGGTGT 60.924 63.158 0.84 0.00 0.00 4.16
406 407 2.680370 GGGAAGTAGGGGCCTGGTG 61.680 68.421 0.84 0.00 0.00 4.17
407 408 2.286197 GGGAAGTAGGGGCCTGGT 60.286 66.667 0.84 0.00 0.00 4.00
408 409 3.097162 GGGGAAGTAGGGGCCTGG 61.097 72.222 0.84 0.00 0.00 4.45
409 410 3.480133 CGGGGAAGTAGGGGCCTG 61.480 72.222 0.84 0.00 0.00 4.85
410 411 4.817909 CCGGGGAAGTAGGGGCCT 62.818 72.222 0.84 0.00 0.00 5.19
412 413 3.477346 GACCGGGGAAGTAGGGGC 61.477 72.222 6.32 0.00 0.00 5.80
413 414 2.039951 TGACCGGGGAAGTAGGGG 59.960 66.667 6.32 0.00 0.00 4.79
414 415 2.064581 CCTGACCGGGGAAGTAGGG 61.065 68.421 6.32 0.00 0.00 3.53
415 416 2.732619 GCCTGACCGGGGAAGTAGG 61.733 68.421 6.32 4.98 0.00 3.18
416 417 2.732619 GGCCTGACCGGGGAAGTAG 61.733 68.421 6.32 0.00 0.00 2.57
417 418 2.686106 GGCCTGACCGGGGAAGTA 60.686 66.667 6.32 0.00 0.00 2.24
470 471 3.420606 CTGCCAGTGAGCGTGCTG 61.421 66.667 0.00 0.00 34.65 4.41
490 491 4.394712 GTCTCCTGGTGGTGGCGG 62.395 72.222 0.00 0.00 34.23 6.13
491 492 4.394712 GGTCTCCTGGTGGTGGCG 62.395 72.222 0.00 0.00 32.65 5.69
492 493 3.249189 TGGTCTCCTGGTGGTGGC 61.249 66.667 0.00 0.00 34.23 5.01
493 494 2.750350 GTGGTCTCCTGGTGGTGG 59.250 66.667 0.00 0.00 34.23 4.61
494 495 2.750350 GGTGGTCTCCTGGTGGTG 59.250 66.667 0.00 0.00 34.23 4.17
495 496 2.923035 CGGTGGTCTCCTGGTGGT 60.923 66.667 0.00 0.00 34.23 4.16
496 497 2.923035 ACGGTGGTCTCCTGGTGG 60.923 66.667 0.00 0.00 0.00 4.61
497 498 2.657237 GACGGTGGTCTCCTGGTG 59.343 66.667 0.00 0.00 40.15 4.17
498 499 2.989824 CGACGGTGGTCTCCTGGT 60.990 66.667 0.00 0.00 41.16 4.00
499 500 4.436998 GCGACGGTGGTCTCCTGG 62.437 72.222 0.00 0.00 41.16 4.45
500 501 3.680786 TGCGACGGTGGTCTCCTG 61.681 66.667 0.00 0.00 41.16 3.86
501 502 3.681835 GTGCGACGGTGGTCTCCT 61.682 66.667 0.00 0.00 41.16 3.69
502 503 4.736896 GGTGCGACGGTGGTCTCC 62.737 72.222 0.00 0.00 41.16 3.71
503 504 3.986006 TGGTGCGACGGTGGTCTC 61.986 66.667 0.00 0.00 41.16 3.36
504 505 4.295119 GTGGTGCGACGGTGGTCT 62.295 66.667 0.00 0.00 41.16 3.85
507 508 4.619227 AAGGTGGTGCGACGGTGG 62.619 66.667 0.00 0.00 0.00 4.61
508 509 3.041940 GAAGGTGGTGCGACGGTG 61.042 66.667 0.00 0.00 0.00 4.94
509 510 3.542676 TGAAGGTGGTGCGACGGT 61.543 61.111 0.00 0.00 0.00 4.83
510 511 3.041940 GTGAAGGTGGTGCGACGG 61.042 66.667 0.00 0.00 0.00 4.79
511 512 3.041940 GGTGAAGGTGGTGCGACG 61.042 66.667 0.00 0.00 0.00 5.12
512 513 2.668550 GGGTGAAGGTGGTGCGAC 60.669 66.667 0.00 0.00 0.00 5.19
513 514 4.308458 CGGGTGAAGGTGGTGCGA 62.308 66.667 0.00 0.00 0.00 5.10
515 516 3.268103 ATCCGGGTGAAGGTGGTGC 62.268 63.158 0.00 0.00 0.00 5.01
516 517 1.078426 GATCCGGGTGAAGGTGGTG 60.078 63.158 0.00 0.00 0.00 4.17
517 518 1.229529 AGATCCGGGTGAAGGTGGT 60.230 57.895 0.00 0.00 0.00 4.16
518 519 1.221840 CAGATCCGGGTGAAGGTGG 59.778 63.158 0.00 0.00 0.00 4.61
519 520 1.221840 CCAGATCCGGGTGAAGGTG 59.778 63.158 0.00 0.00 0.00 4.00
520 521 1.995626 CCCAGATCCGGGTGAAGGT 60.996 63.158 5.76 0.00 41.83 3.50
521 522 2.911143 CCCAGATCCGGGTGAAGG 59.089 66.667 5.76 0.00 41.83 3.46
592 593 3.100862 GATCTTCTTGTGGCGGCGC 62.101 63.158 26.17 26.17 0.00 6.53
593 594 1.741401 TGATCTTCTTGTGGCGGCG 60.741 57.895 0.51 0.51 0.00 6.46
594 595 1.648467 GGTGATCTTCTTGTGGCGGC 61.648 60.000 0.00 0.00 0.00 6.53
595 596 1.026718 GGGTGATCTTCTTGTGGCGG 61.027 60.000 0.00 0.00 0.00 6.13
596 597 0.321564 TGGGTGATCTTCTTGTGGCG 60.322 55.000 0.00 0.00 0.00 5.69
597 598 1.457346 CTGGGTGATCTTCTTGTGGC 58.543 55.000 0.00 0.00 0.00 5.01
598 599 1.952367 GCCTGGGTGATCTTCTTGTGG 60.952 57.143 0.00 0.00 0.00 4.17
599 600 1.457346 GCCTGGGTGATCTTCTTGTG 58.543 55.000 0.00 0.00 0.00 3.33
600 601 0.329596 GGCCTGGGTGATCTTCTTGT 59.670 55.000 0.00 0.00 0.00 3.16
601 602 0.622665 AGGCCTGGGTGATCTTCTTG 59.377 55.000 3.11 0.00 0.00 3.02
602 603 0.622665 CAGGCCTGGGTGATCTTCTT 59.377 55.000 26.14 0.00 0.00 2.52
603 604 1.919600 GCAGGCCTGGGTGATCTTCT 61.920 60.000 33.46 0.00 0.00 2.85
604 605 1.452833 GCAGGCCTGGGTGATCTTC 60.453 63.158 33.46 10.16 0.00 2.87
605 606 2.679716 GCAGGCCTGGGTGATCTT 59.320 61.111 33.46 0.00 0.00 2.40
606 607 3.790437 CGCAGGCCTGGGTGATCT 61.790 66.667 35.34 0.00 38.53 2.75
607 608 4.864334 CCGCAGGCCTGGGTGATC 62.864 72.222 38.62 19.94 46.14 2.92
648 649 4.760047 CCCTTCTCGGCCACGGTG 62.760 72.222 2.24 0.00 41.39 4.94
650 651 4.148825 CTCCCTTCTCGGCCACGG 62.149 72.222 2.24 0.00 41.39 4.94
651 652 2.564553 CTTCTCCCTTCTCGGCCACG 62.565 65.000 2.24 0.00 42.74 4.94
652 653 1.219393 CTTCTCCCTTCTCGGCCAC 59.781 63.158 2.24 0.00 0.00 5.01
653 654 0.544357 TTCTTCTCCCTTCTCGGCCA 60.544 55.000 2.24 0.00 0.00 5.36
654 655 0.176910 CTTCTTCTCCCTTCTCGGCC 59.823 60.000 0.00 0.00 0.00 6.13
655 656 1.136110 CTCTTCTTCTCCCTTCTCGGC 59.864 57.143 0.00 0.00 0.00 5.54
656 657 1.754226 CCTCTTCTTCTCCCTTCTCGG 59.246 57.143 0.00 0.00 0.00 4.63
657 658 2.687935 CTCCTCTTCTTCTCCCTTCTCG 59.312 54.545 0.00 0.00 0.00 4.04
658 659 3.976015 TCTCCTCTTCTTCTCCCTTCTC 58.024 50.000 0.00 0.00 0.00 2.87
659 660 4.045334 TCTTCTCCTCTTCTTCTCCCTTCT 59.955 45.833 0.00 0.00 0.00 2.85
660 661 4.349365 TCTTCTCCTCTTCTTCTCCCTTC 58.651 47.826 0.00 0.00 0.00 3.46
661 662 4.412060 TCTTCTCCTCTTCTTCTCCCTT 57.588 45.455 0.00 0.00 0.00 3.95
662 663 4.352893 CTTCTTCTCCTCTTCTTCTCCCT 58.647 47.826 0.00 0.00 0.00 4.20
663 664 3.450817 CCTTCTTCTCCTCTTCTTCTCCC 59.549 52.174 0.00 0.00 0.00 4.30
664 665 4.081697 CACCTTCTTCTCCTCTTCTTCTCC 60.082 50.000 0.00 0.00 0.00 3.71
711 722 2.850254 GCGTTCTCGAAGATACGGACTC 60.850 54.545 9.35 0.00 39.71 3.36
739 750 2.303022 GGGGAAATGCTCGATCAGGATA 59.697 50.000 0.00 0.00 30.26 2.59
744 755 1.523711 GCGGGGAAATGCTCGATCA 60.524 57.895 0.00 0.00 0.00 2.92
745 756 2.598632 CGCGGGGAAATGCTCGATC 61.599 63.158 0.00 0.00 0.00 3.69
746 757 2.588877 CGCGGGGAAATGCTCGAT 60.589 61.111 0.00 0.00 0.00 3.59
747 758 3.716539 CTCGCGGGGAAATGCTCGA 62.717 63.158 6.13 0.00 0.00 4.04
748 759 3.264897 CTCGCGGGGAAATGCTCG 61.265 66.667 6.13 0.00 0.00 5.03
749 760 3.577313 GCTCGCGGGGAAATGCTC 61.577 66.667 8.71 0.00 0.00 4.26
750 761 4.101448 AGCTCGCGGGGAAATGCT 62.101 61.111 8.71 3.13 0.00 3.79
751 762 3.577313 GAGCTCGCGGGGAAATGC 61.577 66.667 8.71 0.66 0.00 3.56
753 764 2.187946 CTGAGCTCGCGGGGAAAT 59.812 61.111 8.71 0.00 0.00 2.17
776 787 1.514402 GGTACTTTACATACGCGACGC 59.486 52.381 15.93 10.49 0.00 5.19
781 792 5.062558 ACAAACGATGGTACTTTACATACGC 59.937 40.000 0.00 0.00 0.00 4.42
800 811 4.816392 ACAAAACAAGTCTTCCCACAAAC 58.184 39.130 0.00 0.00 0.00 2.93
861 4715 1.284982 CGGACAGAGTTTCGTGCCTG 61.285 60.000 0.00 0.00 0.00 4.85
879 4733 3.285215 GATGCCTGCCTGCCATCG 61.285 66.667 0.00 0.00 0.00 3.84
892 4768 8.129840 CGTACCAAGTATATATCTGTAGGATGC 58.870 40.741 0.00 0.00 35.98 3.91
894 4770 7.284944 GGCGTACCAAGTATATATCTGTAGGAT 59.715 40.741 0.00 0.00 35.70 3.24
902 4778 3.442100 GGCGGCGTACCAAGTATATATC 58.558 50.000 9.37 0.00 34.57 1.63
908 4784 3.340953 GACGGCGGCGTACCAAGTA 62.341 63.158 37.57 0.00 34.57 2.24
932 4808 0.890683 GGGTTGGATTGGTTCTGCTG 59.109 55.000 0.00 0.00 0.00 4.41
942 4824 1.140252 CGATCGGGTTAGGGTTGGATT 59.860 52.381 7.38 0.00 0.00 3.01
1074 4956 1.592669 CCGCTGGATCGGCTTGTAG 60.593 63.158 7.51 0.00 43.18 2.74
1101 4983 0.173708 CGGTTTCTTCCTCCTCCTCG 59.826 60.000 0.00 0.00 0.00 4.63
1108 4990 2.031069 GCACCTTTTCGGTTTCTTCCTC 60.031 50.000 0.00 0.00 46.37 3.71
1111 4993 2.287608 CCTGCACCTTTTCGGTTTCTTC 60.288 50.000 0.00 0.00 46.37 2.87
1112 4994 1.681264 CCTGCACCTTTTCGGTTTCTT 59.319 47.619 0.00 0.00 46.37 2.52
1113 4995 1.318576 CCTGCACCTTTTCGGTTTCT 58.681 50.000 0.00 0.00 46.37 2.52
1114 4996 0.313987 CCCTGCACCTTTTCGGTTTC 59.686 55.000 0.00 0.00 46.37 2.78
1282 5173 0.246086 AGCTCTTCCTCGCACTTGAG 59.754 55.000 0.00 0.00 35.70 3.02
1284 5175 1.018226 CCAGCTCTTCCTCGCACTTG 61.018 60.000 0.00 0.00 0.00 3.16
1285 5176 1.188219 TCCAGCTCTTCCTCGCACTT 61.188 55.000 0.00 0.00 0.00 3.16
1301 5192 4.815973 CCGGACCCTCCCCATCCA 62.816 72.222 0.00 0.00 31.13 3.41
1401 5292 0.097499 TGTACATGTAGGACGCGTCG 59.903 55.000 30.99 19.07 0.00 5.12
1443 5334 7.041984 GGAGCAAATTAGTTAGCATGGTAGTAC 60.042 40.741 4.57 1.79 0.00 2.73
1446 5337 5.822519 TGGAGCAAATTAGTTAGCATGGTAG 59.177 40.000 4.57 0.00 0.00 3.18
1461 5352 4.660303 TGAGGATGGTATAGTGGAGCAAAT 59.340 41.667 0.00 0.00 0.00 2.32
1474 5370 2.295269 TTGGGGGAATGAGGATGGTA 57.705 50.000 0.00 0.00 0.00 3.25
1475 5371 1.392407 TTTGGGGGAATGAGGATGGT 58.608 50.000 0.00 0.00 0.00 3.55
1476 5372 2.781403 ATTTGGGGGAATGAGGATGG 57.219 50.000 0.00 0.00 0.00 3.51
1478 5374 4.733988 AGAGTTATTTGGGGGAATGAGGAT 59.266 41.667 0.00 0.00 0.00 3.24
1479 5375 4.119155 AGAGTTATTTGGGGGAATGAGGA 58.881 43.478 0.00 0.00 0.00 3.71
1480 5376 4.526438 AGAGTTATTTGGGGGAATGAGG 57.474 45.455 0.00 0.00 0.00 3.86
1481 5377 8.416329 CAAATTAGAGTTATTTGGGGGAATGAG 58.584 37.037 0.00 0.00 38.64 2.90
1482 5378 7.147742 GCAAATTAGAGTTATTTGGGGGAATGA 60.148 37.037 9.54 0.00 41.22 2.57
1483 5379 6.986231 GCAAATTAGAGTTATTTGGGGGAATG 59.014 38.462 9.54 0.00 41.22 2.67
1484 5380 6.902974 AGCAAATTAGAGTTATTTGGGGGAAT 59.097 34.615 9.54 0.00 41.22 3.01
1485 5381 6.260663 AGCAAATTAGAGTTATTTGGGGGAA 58.739 36.000 9.54 0.00 41.22 3.97
1507 5403 0.179073 TCTCCCTGCGCAATAAGAGC 60.179 55.000 13.05 0.00 44.03 4.09
1508 5404 2.315925 TTCTCCCTGCGCAATAAGAG 57.684 50.000 13.05 14.74 0.00 2.85
1509 5405 2.779755 TTTCTCCCTGCGCAATAAGA 57.220 45.000 13.05 11.34 0.00 2.10
1510 5406 2.478539 GCTTTTCTCCCTGCGCAATAAG 60.479 50.000 13.05 8.93 0.00 1.73
1513 5409 1.885871 GCTTTTCTCCCTGCGCAAT 59.114 52.632 13.05 0.00 0.00 3.56
1515 5411 3.049674 CGCTTTTCTCCCTGCGCA 61.050 61.111 10.98 10.98 41.85 6.09
1516 5412 3.804193 CCGCTTTTCTCCCTGCGC 61.804 66.667 0.00 0.00 45.97 6.09
1517 5413 2.358737 ACCGCTTTTCTCCCTGCG 60.359 61.111 0.00 0.00 46.74 5.18
1565 5476 0.537371 AAAGCGAACCAACCCTGAGG 60.537 55.000 0.00 0.00 40.04 3.86
1574 5485 0.591170 GCAGTAAGCAAAGCGAACCA 59.409 50.000 0.00 0.00 44.79 3.67
1575 5486 3.384702 GCAGTAAGCAAAGCGAACC 57.615 52.632 0.00 0.00 44.79 3.62
1585 5496 1.084370 ACCGCGATGAAGCAGTAAGC 61.084 55.000 8.23 0.00 46.19 3.09
1587 5498 2.094390 ACTAACCGCGATGAAGCAGTAA 60.094 45.455 8.23 0.00 36.85 2.24
1588 5499 1.475280 ACTAACCGCGATGAAGCAGTA 59.525 47.619 8.23 0.00 36.85 2.74
1589 5500 0.246635 ACTAACCGCGATGAAGCAGT 59.753 50.000 8.23 0.00 36.85 4.40
1590 5501 1.359848 AACTAACCGCGATGAAGCAG 58.640 50.000 8.23 0.00 36.85 4.24
1592 5503 4.531659 AAATAACTAACCGCGATGAAGC 57.468 40.909 8.23 0.00 0.00 3.86
1625 5558 5.522824 CCAATATACAGCGATCATCAGATGG 59.477 44.000 10.67 0.00 33.72 3.51
1676 5609 2.284263 TCGTCTCTGCAGCAATGTAG 57.716 50.000 9.47 0.00 0.00 2.74
1745 5678 2.356382 TCTCTTTTCTCCTCGATCTCGC 59.644 50.000 0.00 0.00 39.60 5.03
1866 5799 2.203788 TCCAGGTGGAACTCGGCT 60.204 61.111 0.00 0.00 42.18 5.52
1959 5892 1.377725 CCTGCAGAAGCGGTTGGAT 60.378 57.895 17.39 0.00 45.95 3.41
1983 5916 1.484240 AGATAGGTGACAAGCTGAGCC 59.516 52.381 0.00 0.00 35.29 4.70
2010 5943 1.507141 CGTGAAGCGCCTCTTGGTTT 61.507 55.000 2.29 0.00 34.56 3.27
2041 5974 2.550606 GTTTGTAGTCGTGAATGGGCAA 59.449 45.455 0.00 0.00 0.00 4.52
2051 5984 1.494824 GCACTTCCGTTTGTAGTCGT 58.505 50.000 0.00 0.00 0.00 4.34
2073 6006 0.886490 CGCTGGGCTTCATGTATCCC 60.886 60.000 4.37 4.37 39.22 3.85
2157 6090 6.456795 AGATGGCTACTAAATCAAAAAGGC 57.543 37.500 0.00 0.00 0.00 4.35
2193 6133 9.724839 GATACACACAATTCTAGTCTAGTCTTC 57.275 37.037 6.77 0.00 0.00 2.87
2240 6188 7.736447 AGTCCAAGTCTAAATATATGCAAGC 57.264 36.000 0.00 0.00 0.00 4.01
2254 6202 7.784470 ACTCTCTAATTACAAGTCCAAGTCT 57.216 36.000 0.00 0.00 0.00 3.24
2365 6313 3.300388 AGGAGCTGGATCGTTGAGAATA 58.700 45.455 0.00 0.00 0.00 1.75
2366 6314 2.114616 AGGAGCTGGATCGTTGAGAAT 58.885 47.619 0.00 0.00 0.00 2.40
2367 6315 1.561643 AGGAGCTGGATCGTTGAGAA 58.438 50.000 0.00 0.00 0.00 2.87
2385 6333 4.437239 CAGTTGGTAGATTGCACTCCTAG 58.563 47.826 0.00 0.00 0.00 3.02
2405 6353 3.051392 GATTGGCCGCCGAAACCAG 62.051 63.158 2.61 0.00 34.28 4.00
2419 6367 7.987458 TCCTAGAAACAAACTATGCTAGGATTG 59.013 37.037 0.65 2.71 45.34 2.67
2429 6377 8.936864 CATTTTCGTCTCCTAGAAACAAACTAT 58.063 33.333 0.00 0.00 36.26 2.12
2441 6389 3.508793 ACGACTTCCATTTTCGTCTCCTA 59.491 43.478 0.00 0.00 42.11 2.94
2461 6409 0.723790 CGACTATAGCCGCGGTTACG 60.724 60.000 28.70 20.00 44.63 3.18
2486 6434 6.639632 ACTCTCAAATGTATTGCACAAACT 57.360 33.333 0.00 0.00 41.55 2.66
2640 6588 7.148120 CGGAGTCGGTTACAATATATACAGGAT 60.148 40.741 0.00 0.00 0.00 3.24
2780 6729 4.021925 GCGGCAGGAGGAGTTGGT 62.022 66.667 0.00 0.00 0.00 3.67
2863 6899 2.202810 GGAAGAGGAGAAGCGGCG 60.203 66.667 0.51 0.51 0.00 6.46
2864 6900 2.188207 GGGAAGAGGAGAAGCGGC 59.812 66.667 0.00 0.00 0.00 6.53
2869 6905 1.616628 GGCAGGGGGAAGAGGAGAA 60.617 63.158 0.00 0.00 0.00 2.87
2870 6906 2.041265 GGCAGGGGGAAGAGGAGA 59.959 66.667 0.00 0.00 0.00 3.71
2881 6935 2.125106 GAAGTAGTGGCGGCAGGG 60.125 66.667 13.91 0.00 0.00 4.45
2896 6950 2.647802 CCCTTAGGGTTTTGAGAGGGAA 59.352 50.000 9.64 0.00 45.37 3.97
2903 6957 1.303806 GCGGCCCTTAGGGTTTTGA 60.304 57.895 19.76 0.00 46.51 2.69
2989 7044 1.299648 CTTTGGCCATGGAGACGGA 59.700 57.895 18.40 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.