Multiple sequence alignment - TraesCS2B01G108800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G108800 chr2B 100.000 6890 0 0 1 6890 69409084 69415973 0.000000e+00 12724.0
1 TraesCS2B01G108800 chr2B 79.616 937 129 40 1719 2633 69410691 69411587 3.530000e-172 616.0
2 TraesCS2B01G108800 chr2B 79.616 937 129 40 1608 2504 69410802 69411716 3.530000e-172 616.0
3 TraesCS2B01G108800 chr2B 78.723 611 91 27 2037 2633 69410873 69411458 8.440000e-99 372.0
4 TraesCS2B01G108800 chr2B 78.723 611 91 27 1790 2375 69411120 69411716 8.440000e-99 372.0
5 TraesCS2B01G108800 chr2B 97.419 155 4 0 1 155 278846747 278846593 1.470000e-66 265.0
6 TraesCS2B01G108800 chr2B 91.729 133 11 0 1 133 68736171 68736303 1.180000e-42 185.0
7 TraesCS2B01G108800 chr2B 97.222 36 1 0 6344 6379 391211770 391211735 2.070000e-05 62.1
8 TraesCS2B01G108800 chr2A 92.785 5974 268 83 305 6213 47905577 47911452 0.000000e+00 8493.0
9 TraesCS2B01G108800 chr2A 93.294 507 27 5 6216 6720 47911491 47911992 0.000000e+00 741.0
10 TraesCS2B01G108800 chr2A 81.156 934 115 41 1606 2504 47906999 47907906 0.000000e+00 693.0
11 TraesCS2B01G108800 chr2A 79.979 964 133 36 1688 2633 47906856 47907777 0.000000e+00 656.0
12 TraesCS2B01G108800 chr2A 87.032 347 32 7 2042 2375 47907560 47907906 5.040000e-101 379.0
13 TraesCS2B01G108800 chr2A 82.014 417 58 10 2216 2631 47907246 47907646 8.560000e-89 339.0
14 TraesCS2B01G108800 chr2D 95.242 3972 105 29 2287 6213 44076695 44080627 0.000000e+00 6211.0
15 TraesCS2B01G108800 chr2D 87.927 2021 109 63 305 2271 44074370 44076309 0.000000e+00 2255.0
16 TraesCS2B01G108800 chr2D 95.137 329 15 1 6216 6544 44080666 44080993 1.020000e-142 518.0
17 TraesCS2B01G108800 chr2D 91.643 347 26 1 2158 2501 44076695 44077041 1.740000e-130 477.0
18 TraesCS2B01G108800 chr2D 91.743 218 18 0 2416 2633 44076695 44076912 3.120000e-78 303.0
19 TraesCS2B01G108800 chr2D 87.692 260 18 6 6623 6881 44080991 44081237 2.430000e-74 291.0
20 TraesCS2B01G108800 chr2D 100.000 28 0 0 697 724 333278345 333278372 1.200000e-02 52.8
21 TraesCS2B01G108800 chr3B 96.104 154 6 0 1 154 508218414 508218261 1.150000e-62 252.0
22 TraesCS2B01G108800 chr3B 90.152 132 12 1 2 133 773733811 773733941 3.300000e-38 171.0
23 TraesCS2B01G108800 chr3B 100.000 29 0 0 698 726 699686127 699686099 3.000000e-03 54.7
24 TraesCS2B01G108800 chr1D 92.683 123 8 1 1 122 30290638 30290760 7.100000e-40 176.0
25 TraesCS2B01G108800 chr1D 90.099 101 6 2 6450 6550 51837452 51837548 2.020000e-25 128.0
26 TraesCS2B01G108800 chr1D 89.899 99 6 3 6452 6550 254451315 254451221 2.610000e-24 124.0
27 TraesCS2B01G108800 chr7B 89.474 133 14 0 1 133 721427626 721427494 1.190000e-37 169.0
28 TraesCS2B01G108800 chr7B 89.474 133 11 2 1 133 535231565 535231694 1.540000e-36 165.0
29 TraesCS2B01G108800 chr5B 89.394 132 12 2 2 133 508617845 508617974 1.540000e-36 165.0
30 TraesCS2B01G108800 chr5B 94.737 38 2 0 6337 6374 455593734 455593697 7.460000e-05 60.2
31 TraesCS2B01G108800 chr5B 100.000 30 0 0 697 726 589356638 589356609 1.000000e-03 56.5
32 TraesCS2B01G108800 chr4B 89.474 133 11 2 1 133 35027581 35027710 1.540000e-36 165.0
33 TraesCS2B01G108800 chr5D 89.899 99 6 2 6452 6550 503308172 503308078 2.610000e-24 124.0
34 TraesCS2B01G108800 chr5D 89.899 99 6 2 6452 6550 512407213 512407119 2.610000e-24 124.0
35 TraesCS2B01G108800 chr5D 88.235 51 2 4 6325 6374 80151435 80151482 2.680000e-04 58.4
36 TraesCS2B01G108800 chr4D 89.899 99 6 2 6452 6550 19884733 19884639 2.610000e-24 124.0
37 TraesCS2B01G108800 chr3D 89.899 99 6 2 6452 6550 97453976 97453882 2.610000e-24 124.0
38 TraesCS2B01G108800 chr1A 89.899 99 6 2 6452 6550 554476760 554476666 2.610000e-24 124.0
39 TraesCS2B01G108800 chrUn 96.721 61 2 0 6380 6440 231554825 231554765 1.220000e-17 102.0
40 TraesCS2B01G108800 chrUn 96.721 61 2 0 6380 6440 273333301 273333361 1.220000e-17 102.0
41 TraesCS2B01G108800 chrUn 96.721 61 2 0 6380 6440 290916876 290916816 1.220000e-17 102.0
42 TraesCS2B01G108800 chrUn 96.721 61 2 0 6380 6440 312035063 312035003 1.220000e-17 102.0
43 TraesCS2B01G108800 chrUn 96.721 61 2 0 6380 6440 312174925 312174865 1.220000e-17 102.0
44 TraesCS2B01G108800 chrUn 96.721 61 2 0 6380 6440 315702410 315702470 1.220000e-17 102.0
45 TraesCS2B01G108800 chrUn 100.000 31 0 0 6344 6374 217895226 217895256 2.680000e-04 58.4
46 TraesCS2B01G108800 chrUn 100.000 31 0 0 6344 6374 264062352 264062382 2.680000e-04 58.4
47 TraesCS2B01G108800 chrUn 100.000 31 0 0 6344 6374 416565491 416565461 2.680000e-04 58.4
48 TraesCS2B01G108800 chrUn 100.000 31 0 0 6344 6374 447496657 447496627 2.680000e-04 58.4
49 TraesCS2B01G108800 chr6D 96.721 61 2 0 6380 6440 108496570 108496630 1.220000e-17 102.0
50 TraesCS2B01G108800 chr1B 100.000 29 0 0 697 725 442998145 442998173 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G108800 chr2B 69409084 69415973 6889 False 12724.000000 12724 100.0000 1 6890 1 chr2B.!!$F2 6889
1 TraesCS2B01G108800 chr2B 69410691 69411716 1025 False 494.000000 616 79.1695 1608 2633 4 chr2B.!!$F3 1025
2 TraesCS2B01G108800 chr2A 47905577 47911452 5875 False 8493.000000 8493 92.7850 305 6213 1 chr2A.!!$F1 5908
3 TraesCS2B01G108800 chr2A 47906856 47911992 5136 False 561.600000 741 84.6950 1606 6720 5 chr2A.!!$F2 5114
4 TraesCS2B01G108800 chr2D 44074370 44081237 6867 False 1675.833333 6211 91.5640 305 6881 6 chr2D.!!$F2 6576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
514 541 0.034767 GCCCTACCCTACCAAACCAC 60.035 60.000 0.00 0.00 0.00 4.16 F
946 1043 0.036010 CCGATCTGTTGCTCCTGGTT 60.036 55.000 0.00 0.00 0.00 3.67 F
952 1049 0.754957 TGTTGCTCCTGGTTTGTGGG 60.755 55.000 0.00 0.00 0.00 4.61 F
1113 1212 1.156322 AGGAGGAGGAGGTGGAGGAA 61.156 60.000 0.00 0.00 0.00 3.36 F
1482 1599 1.513622 GAAGCAGGAGTCGGAGGAC 59.486 63.158 0.00 0.00 43.76 3.85 F
1599 1731 1.553654 CGATGCGGATTTCGACGAC 59.446 57.895 0.00 0.00 42.43 4.34 F
2709 3214 1.743321 GCTCTAGCCGGCAGAGACAT 61.743 60.000 38.03 20.06 41.80 3.06 F
2847 3352 2.278332 GGGATTATGCCCCAACTCTC 57.722 55.000 0.00 0.00 42.62 3.20 F
4008 4522 0.741915 TCCACTTTGCCGTTCAAACC 59.258 50.000 0.00 0.00 39.58 3.27 F
4432 4948 1.133792 ACTTTCTGTGTTGGTCTGGGG 60.134 52.381 0.00 0.00 0.00 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1599 1731 0.466555 AATCCTCGTCCTCCTCCTCG 60.467 60.000 0.00 0.00 0.00 4.63 R
2640 3145 2.266055 GCCTCGGACAGGTTCCTG 59.734 66.667 16.25 16.25 45.61 3.86 R
2846 3351 3.618171 GGTCTAACCTTTGTGGCGA 57.382 52.632 0.00 0.00 40.22 5.54 R
3042 3556 0.109226 CTTCCTCCACGTCGTCCTTC 60.109 60.000 0.00 0.00 0.00 3.46 R
3090 3604 2.176889 CTCGTCTTCCTCCCAACCTTA 58.823 52.381 0.00 0.00 0.00 2.69 R
3875 4389 5.753921 ACTAGAAAGAACACAGCACACTTAC 59.246 40.000 0.00 0.00 0.00 2.34 R
4008 4522 2.715749 TGTACATCATCAAGCCCTGG 57.284 50.000 0.00 0.00 0.00 4.45 R
5023 5539 0.322816 TCAGCTGGTCCTTGGCATTC 60.323 55.000 15.13 0.00 0.00 2.67 R
5407 5954 1.176527 GGCCAACAGCATAGCAGAAA 58.823 50.000 0.00 0.00 46.50 2.52 R
6602 7186 2.420628 TGTAACAGTACGGTTCGGTG 57.579 50.000 14.85 0.00 32.40 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.560636 TTCTAACTAATGCAGGGGCTC 57.439 47.619 0.00 0.00 41.91 4.70
23 24 2.907458 AACTAATGCAGGGGCTCTTT 57.093 45.000 0.00 0.00 41.91 2.52
24 25 2.907458 ACTAATGCAGGGGCTCTTTT 57.093 45.000 0.00 0.00 41.91 2.27
25 26 2.450476 ACTAATGCAGGGGCTCTTTTG 58.550 47.619 0.00 0.00 41.91 2.44
26 27 1.135721 CTAATGCAGGGGCTCTTTTGC 59.864 52.381 0.00 2.00 41.91 3.68
27 28 2.198150 TGCAGGGGCTCTTTTGCA 59.802 55.556 6.82 6.82 43.62 4.08
29 30 1.047596 TGCAGGGGCTCTTTTGCAAA 61.048 50.000 8.05 8.05 42.96 3.68
30 31 0.106521 GCAGGGGCTCTTTTGCAAAA 59.893 50.000 22.61 22.61 36.59 2.44
32 33 2.811504 GCAGGGGCTCTTTTGCAAAAAT 60.812 45.455 23.92 3.54 36.59 1.82
35 36 3.136260 AGGGGCTCTTTTGCAAAAATGAA 59.864 39.130 23.92 10.10 34.04 2.57
36 37 3.882288 GGGGCTCTTTTGCAAAAATGAAA 59.118 39.130 23.92 2.50 34.04 2.69
37 38 4.261155 GGGGCTCTTTTGCAAAAATGAAAC 60.261 41.667 23.92 13.35 34.04 2.78
38 39 4.517287 GGCTCTTTTGCAAAAATGAAACG 58.483 39.130 23.92 11.59 34.04 3.60
39 40 4.033932 GGCTCTTTTGCAAAAATGAAACGT 59.966 37.500 23.92 0.00 34.04 3.99
40 41 5.447144 GGCTCTTTTGCAAAAATGAAACGTT 60.447 36.000 23.92 0.00 34.04 3.99
41 42 6.020984 GCTCTTTTGCAAAAATGAAACGTTT 58.979 32.000 23.92 14.57 0.00 3.60
42 43 6.522855 GCTCTTTTGCAAAAATGAAACGTTTT 59.477 30.769 23.92 0.00 0.00 2.43
43 44 7.252962 GCTCTTTTGCAAAAATGAAACGTTTTC 60.253 33.333 23.92 9.01 0.00 2.29
44 45 7.801752 TCTTTTGCAAAAATGAAACGTTTTCT 58.198 26.923 23.92 2.65 0.00 2.52
45 46 8.286097 TCTTTTGCAAAAATGAAACGTTTTCTT 58.714 25.926 23.92 8.91 0.00 2.52
46 47 9.535270 CTTTTGCAAAAATGAAACGTTTTCTTA 57.465 25.926 23.92 3.01 0.00 2.10
47 48 9.535270 TTTTGCAAAAATGAAACGTTTTCTTAG 57.465 25.926 21.94 4.04 0.00 2.18
48 49 7.227992 TGCAAAAATGAAACGTTTTCTTAGG 57.772 32.000 15.89 4.28 0.00 2.69
49 50 7.036220 TGCAAAAATGAAACGTTTTCTTAGGA 58.964 30.769 15.89 1.41 0.00 2.94
50 51 7.545965 TGCAAAAATGAAACGTTTTCTTAGGAA 59.454 29.630 15.89 0.00 0.00 3.36
51 52 7.844169 GCAAAAATGAAACGTTTTCTTAGGAAC 59.156 33.333 15.89 0.00 0.00 3.62
52 53 9.083080 CAAAAATGAAACGTTTTCTTAGGAACT 57.917 29.630 15.89 0.00 46.37 3.01
53 54 8.851960 AAAATGAAACGTTTTCTTAGGAACTC 57.148 30.769 15.89 0.00 41.75 3.01
54 55 7.562454 AATGAAACGTTTTCTTAGGAACTCA 57.438 32.000 15.89 4.16 41.75 3.41
55 56 6.354039 TGAAACGTTTTCTTAGGAACTCAC 57.646 37.500 15.89 0.00 41.75 3.51
56 57 6.110707 TGAAACGTTTTCTTAGGAACTCACT 58.889 36.000 15.89 0.00 41.75 3.41
57 58 6.596497 TGAAACGTTTTCTTAGGAACTCACTT 59.404 34.615 15.89 0.00 41.75 3.16
58 59 7.765360 TGAAACGTTTTCTTAGGAACTCACTTA 59.235 33.333 15.89 0.00 41.75 2.24
59 60 8.496707 AAACGTTTTCTTAGGAACTCACTTAA 57.503 30.769 7.96 0.00 41.75 1.85
60 61 8.672823 AACGTTTTCTTAGGAACTCACTTAAT 57.327 30.769 0.00 0.00 41.75 1.40
61 62 9.768662 AACGTTTTCTTAGGAACTCACTTAATA 57.231 29.630 0.00 0.00 41.75 0.98
62 63 9.939802 ACGTTTTCTTAGGAACTCACTTAATAT 57.060 29.630 0.00 0.00 41.75 1.28
70 71 7.056844 AGGAACTCACTTAATATAGGACTGC 57.943 40.000 0.00 0.00 0.00 4.40
71 72 5.921408 GGAACTCACTTAATATAGGACTGCG 59.079 44.000 0.00 0.00 0.00 5.18
72 73 5.455056 ACTCACTTAATATAGGACTGCGG 57.545 43.478 0.00 0.00 0.00 5.69
73 74 4.281182 ACTCACTTAATATAGGACTGCGGG 59.719 45.833 0.00 0.00 0.00 6.13
74 75 4.220724 TCACTTAATATAGGACTGCGGGT 58.779 43.478 0.00 0.00 0.00 5.28
75 76 4.652421 TCACTTAATATAGGACTGCGGGTT 59.348 41.667 0.00 0.00 0.00 4.11
76 77 4.750098 CACTTAATATAGGACTGCGGGTTG 59.250 45.833 0.00 0.00 0.00 3.77
77 78 4.652421 ACTTAATATAGGACTGCGGGTTGA 59.348 41.667 0.00 0.00 0.00 3.18
78 79 5.129815 ACTTAATATAGGACTGCGGGTTGAA 59.870 40.000 0.00 0.00 0.00 2.69
79 80 4.706842 AATATAGGACTGCGGGTTGAAT 57.293 40.909 0.00 0.00 0.00 2.57
80 81 4.706842 ATATAGGACTGCGGGTTGAATT 57.293 40.909 0.00 0.00 0.00 2.17
81 82 2.396590 TAGGACTGCGGGTTGAATTC 57.603 50.000 0.00 0.00 0.00 2.17
82 83 0.400213 AGGACTGCGGGTTGAATTCA 59.600 50.000 3.38 3.38 0.00 2.57
83 84 1.202879 AGGACTGCGGGTTGAATTCAA 60.203 47.619 16.91 16.91 0.00 2.69
97 98 4.681744 TGAATTCAACAAACAACAGAGGC 58.318 39.130 5.45 0.00 0.00 4.70
98 99 4.402155 TGAATTCAACAAACAACAGAGGCT 59.598 37.500 5.45 0.00 0.00 4.58
99 100 5.105392 TGAATTCAACAAACAACAGAGGCTT 60.105 36.000 5.45 0.00 0.00 4.35
100 101 4.799564 TTCAACAAACAACAGAGGCTTT 57.200 36.364 0.00 0.00 0.00 3.51
101 102 4.799564 TCAACAAACAACAGAGGCTTTT 57.200 36.364 0.00 0.00 0.00 2.27
102 103 5.146010 TCAACAAACAACAGAGGCTTTTT 57.854 34.783 0.00 0.00 0.00 1.94
118 119 1.212616 TTTTTGCAAAATCGGCCACG 58.787 45.000 24.39 0.00 42.74 4.94
131 132 3.359523 CCACGACGGACGACCAGA 61.360 66.667 6.90 0.00 45.77 3.86
132 133 2.640989 CACGACGGACGACCAGAA 59.359 61.111 6.90 0.00 45.77 3.02
133 134 1.442184 CACGACGGACGACCAGAAG 60.442 63.158 6.90 0.00 45.77 2.85
134 135 2.504244 CGACGGACGACCAGAAGC 60.504 66.667 4.48 0.00 45.77 3.86
135 136 2.504244 GACGGACGACCAGAAGCG 60.504 66.667 4.48 0.00 35.59 4.68
136 137 2.974489 GACGGACGACCAGAAGCGA 61.974 63.158 4.48 0.00 35.59 4.93
137 138 2.267681 GACGGACGACCAGAAGCGAT 62.268 60.000 4.48 0.00 35.59 4.58
138 139 1.028330 ACGGACGACCAGAAGCGATA 61.028 55.000 4.48 0.00 35.59 2.92
139 140 0.317103 CGGACGACCAGAAGCGATAG 60.317 60.000 4.48 0.00 35.59 2.08
185 186 7.979786 AGGTAGAGAGATAGAGATAGAGAGG 57.020 44.000 0.00 0.00 0.00 3.69
186 187 7.488205 AGGTAGAGAGATAGAGATAGAGAGGT 58.512 42.308 0.00 0.00 0.00 3.85
187 188 8.630091 AGGTAGAGAGATAGAGATAGAGAGGTA 58.370 40.741 0.00 0.00 0.00 3.08
188 189 8.915036 GGTAGAGAGATAGAGATAGAGAGGTAG 58.085 44.444 0.00 0.00 0.00 3.18
189 190 9.696572 GTAGAGAGATAGAGATAGAGAGGTAGA 57.303 40.741 0.00 0.00 0.00 2.59
190 191 8.830915 AGAGAGATAGAGATAGAGAGGTAGAG 57.169 42.308 0.00 0.00 0.00 2.43
191 192 8.624670 AGAGAGATAGAGATAGAGAGGTAGAGA 58.375 40.741 0.00 0.00 0.00 3.10
192 193 9.427821 GAGAGATAGAGATAGAGAGGTAGAGAT 57.572 40.741 0.00 0.00 0.00 2.75
199 200 9.790297 AGAGATAGAGAGGTAGAGATAGAGATT 57.210 37.037 0.00 0.00 0.00 2.40
204 205 7.394816 AGAGAGGTAGAGATAGAGATTACTGC 58.605 42.308 0.00 0.00 0.00 4.40
205 206 6.481643 AGAGGTAGAGATAGAGATTACTGCC 58.518 44.000 0.00 0.00 0.00 4.85
206 207 5.576128 AGGTAGAGATAGAGATTACTGCCC 58.424 45.833 0.00 0.00 32.22 5.36
207 208 4.707934 GGTAGAGATAGAGATTACTGCCCC 59.292 50.000 0.00 0.00 0.00 5.80
208 209 4.477536 AGAGATAGAGATTACTGCCCCA 57.522 45.455 0.00 0.00 0.00 4.96
209 210 4.820775 AGAGATAGAGATTACTGCCCCAA 58.179 43.478 0.00 0.00 0.00 4.12
210 211 4.837860 AGAGATAGAGATTACTGCCCCAAG 59.162 45.833 0.00 0.00 0.00 3.61
211 212 4.561752 AGATAGAGATTACTGCCCCAAGT 58.438 43.478 0.00 0.00 0.00 3.16
212 213 5.716979 AGATAGAGATTACTGCCCCAAGTA 58.283 41.667 0.00 0.00 0.00 2.24
213 214 5.777732 AGATAGAGATTACTGCCCCAAGTAG 59.222 44.000 0.00 0.00 34.24 2.57
214 215 3.041946 AGAGATTACTGCCCCAAGTAGG 58.958 50.000 0.00 0.00 34.24 3.18
215 216 3.039011 GAGATTACTGCCCCAAGTAGGA 58.961 50.000 0.00 0.00 41.22 2.94
216 217 3.454812 GAGATTACTGCCCCAAGTAGGAA 59.545 47.826 0.00 0.00 41.22 3.36
217 218 3.850173 AGATTACTGCCCCAAGTAGGAAA 59.150 43.478 0.00 0.00 34.32 3.13
218 219 4.291249 AGATTACTGCCCCAAGTAGGAAAA 59.709 41.667 0.00 0.00 34.32 2.29
219 220 4.456662 TTACTGCCCCAAGTAGGAAAAA 57.543 40.909 0.00 0.00 41.22 1.94
240 241 3.898517 AAAAAGTTCGCTCCAGCTAAC 57.101 42.857 7.68 7.68 44.14 2.34
241 242 1.809684 AAAGTTCGCTCCAGCTAACC 58.190 50.000 11.29 0.00 44.66 2.85
242 243 0.389948 AAGTTCGCTCCAGCTAACCG 60.390 55.000 11.29 0.00 44.66 4.44
243 244 1.080025 GTTCGCTCCAGCTAACCGT 60.080 57.895 4.93 0.00 39.79 4.83
244 245 0.669625 GTTCGCTCCAGCTAACCGTT 60.670 55.000 4.93 0.00 39.79 4.44
245 246 0.889994 TTCGCTCCAGCTAACCGTTA 59.110 50.000 0.00 0.00 39.32 3.18
246 247 1.108776 TCGCTCCAGCTAACCGTTAT 58.891 50.000 0.00 0.00 39.32 1.89
247 248 1.066605 TCGCTCCAGCTAACCGTTATC 59.933 52.381 0.00 0.00 39.32 1.75
248 249 1.067212 CGCTCCAGCTAACCGTTATCT 59.933 52.381 0.00 0.00 39.32 1.98
249 250 2.481449 CGCTCCAGCTAACCGTTATCTT 60.481 50.000 0.00 0.00 39.32 2.40
250 251 3.532542 GCTCCAGCTAACCGTTATCTTT 58.467 45.455 0.00 0.00 38.21 2.52
251 252 3.939592 GCTCCAGCTAACCGTTATCTTTT 59.060 43.478 0.00 0.00 38.21 2.27
252 253 4.395231 GCTCCAGCTAACCGTTATCTTTTT 59.605 41.667 0.00 0.00 38.21 1.94
253 254 5.583457 GCTCCAGCTAACCGTTATCTTTTTA 59.417 40.000 0.00 0.00 38.21 1.52
254 255 6.260271 GCTCCAGCTAACCGTTATCTTTTTAT 59.740 38.462 0.00 0.00 38.21 1.40
255 256 7.201705 GCTCCAGCTAACCGTTATCTTTTTATT 60.202 37.037 0.00 0.00 38.21 1.40
256 257 8.570068 TCCAGCTAACCGTTATCTTTTTATTT 57.430 30.769 0.00 0.00 0.00 1.40
257 258 9.016438 TCCAGCTAACCGTTATCTTTTTATTTT 57.984 29.630 0.00 0.00 0.00 1.82
258 259 9.634163 CCAGCTAACCGTTATCTTTTTATTTTT 57.366 29.630 0.00 0.00 0.00 1.94
280 281 6.998258 TTTGAGAAACAGCTACGTACTAAC 57.002 37.500 0.00 0.00 0.00 2.34
281 282 5.051891 TGAGAAACAGCTACGTACTAACC 57.948 43.478 0.00 0.00 0.00 2.85
282 283 4.088823 AGAAACAGCTACGTACTAACCG 57.911 45.455 0.00 0.00 0.00 4.44
283 284 3.503748 AGAAACAGCTACGTACTAACCGT 59.496 43.478 0.00 0.00 42.06 4.83
284 285 3.477899 AACAGCTACGTACTAACCGTC 57.522 47.619 0.00 0.00 39.60 4.79
285 286 2.426522 ACAGCTACGTACTAACCGTCA 58.573 47.619 0.00 0.00 39.60 4.35
286 287 3.012518 ACAGCTACGTACTAACCGTCAT 58.987 45.455 0.00 0.00 39.60 3.06
287 288 3.064545 ACAGCTACGTACTAACCGTCATC 59.935 47.826 0.00 0.00 39.60 2.92
288 289 3.311871 CAGCTACGTACTAACCGTCATCT 59.688 47.826 0.00 0.00 39.60 2.90
289 290 3.944015 AGCTACGTACTAACCGTCATCTT 59.056 43.478 0.00 0.00 39.60 2.40
290 291 4.397417 AGCTACGTACTAACCGTCATCTTT 59.603 41.667 0.00 0.00 39.60 2.52
291 292 5.098211 GCTACGTACTAACCGTCATCTTTT 58.902 41.667 0.00 0.00 39.60 2.27
292 293 5.574443 GCTACGTACTAACCGTCATCTTTTT 59.426 40.000 0.00 0.00 39.60 1.94
395 400 2.760385 CCCCTCCCTCCTCGTGAC 60.760 72.222 0.00 0.00 0.00 3.67
446 473 1.404315 CCCTTCCTCTCGTTTTCTCCG 60.404 57.143 0.00 0.00 0.00 4.63
463 490 2.585153 GTTCCCCTCTCGGCCTTC 59.415 66.667 0.00 0.00 0.00 3.46
513 540 1.555477 CGCCCTACCCTACCAAACCA 61.555 60.000 0.00 0.00 0.00 3.67
514 541 0.034767 GCCCTACCCTACCAAACCAC 60.035 60.000 0.00 0.00 0.00 4.16
515 542 0.622136 CCCTACCCTACCAAACCACC 59.378 60.000 0.00 0.00 0.00 4.61
516 543 1.364269 CCTACCCTACCAAACCACCA 58.636 55.000 0.00 0.00 0.00 4.17
519 546 1.076014 CCCTACCAAACCACCACCC 59.924 63.158 0.00 0.00 0.00 4.61
522 549 1.387636 TACCAAACCACCACCCCCT 60.388 57.895 0.00 0.00 0.00 4.79
525 552 2.037677 AAACCACCACCCCCTCCT 60.038 61.111 0.00 0.00 0.00 3.69
532 559 2.041405 CACCCCCTCCTCCCTCTC 60.041 72.222 0.00 0.00 0.00 3.20
534 561 4.179599 CCCCCTCCTCCCTCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
536 563 3.368501 CCCTCCTCCCTCTCCCCA 61.369 72.222 0.00 0.00 0.00 4.96
537 564 2.787866 CCTCCTCCCTCTCCCCAA 59.212 66.667 0.00 0.00 0.00 4.12
539 566 1.690985 CTCCTCCCTCTCCCCAACC 60.691 68.421 0.00 0.00 0.00 3.77
584 615 4.605183 ACCCGATTCCATCCAAAATTACA 58.395 39.130 0.00 0.00 0.00 2.41
586 617 5.127031 ACCCGATTCCATCCAAAATTACAAG 59.873 40.000 0.00 0.00 0.00 3.16
587 618 5.127031 CCCGATTCCATCCAAAATTACAAGT 59.873 40.000 0.00 0.00 0.00 3.16
588 619 6.350949 CCCGATTCCATCCAAAATTACAAGTT 60.351 38.462 0.00 0.00 0.00 2.66
590 621 7.312154 CGATTCCATCCAAAATTACAAGTTCA 58.688 34.615 0.00 0.00 0.00 3.18
591 622 7.485913 CGATTCCATCCAAAATTACAAGTTCAG 59.514 37.037 0.00 0.00 0.00 3.02
592 623 7.831691 TTCCATCCAAAATTACAAGTTCAGA 57.168 32.000 0.00 0.00 0.00 3.27
633 697 4.023193 CCACCACCGCAATTATTATCTTCC 60.023 45.833 0.00 0.00 0.00 3.46
670 734 1.675007 AGGAAGGAAGGAAGGAAGGG 58.325 55.000 0.00 0.00 0.00 3.95
671 735 0.626382 GGAAGGAAGGAAGGAAGGGG 59.374 60.000 0.00 0.00 0.00 4.79
672 736 1.670059 GAAGGAAGGAAGGAAGGGGA 58.330 55.000 0.00 0.00 0.00 4.81
673 737 1.993301 GAAGGAAGGAAGGAAGGGGAA 59.007 52.381 0.00 0.00 0.00 3.97
674 738 1.373536 AGGAAGGAAGGAAGGGGAAC 58.626 55.000 0.00 0.00 0.00 3.62
704 789 3.816524 CGAACTCGAGCCTCGCCT 61.817 66.667 20.45 0.00 43.02 5.52
705 790 2.103340 GAACTCGAGCCTCGCCTC 59.897 66.667 13.61 1.74 40.21 4.70
763 848 1.076339 CCACTGTTGGGTGTTGGGT 60.076 57.895 0.00 0.00 39.57 4.51
766 851 2.830827 TGTTGGGTGTTGGGTGCG 60.831 61.111 0.00 0.00 0.00 5.34
767 852 4.279043 GTTGGGTGTTGGGTGCGC 62.279 66.667 0.00 0.00 0.00 6.09
804 889 3.353836 TGCGGCGAGGCAAGTTTC 61.354 61.111 12.98 0.00 40.59 2.78
831 916 2.731571 CCCTCTCGCCCCGAAATGA 61.732 63.158 0.00 0.00 34.74 2.57
864 961 7.093465 CCTCCTTCCTTTTTACCCTTTTTATCC 60.093 40.741 0.00 0.00 0.00 2.59
871 968 7.339721 CCTTTTTACCCTTTTTATCCTCTCTCC 59.660 40.741 0.00 0.00 0.00 3.71
939 1036 1.656652 CCGAATTCCGATCTGTTGCT 58.343 50.000 0.00 0.00 41.76 3.91
940 1037 1.594862 CCGAATTCCGATCTGTTGCTC 59.405 52.381 0.00 0.00 41.76 4.26
942 1039 2.739932 CGAATTCCGATCTGTTGCTCCT 60.740 50.000 0.00 0.00 41.76 3.69
945 1042 0.904865 TCCGATCTGTTGCTCCTGGT 60.905 55.000 0.00 0.00 0.00 4.00
946 1043 0.036010 CCGATCTGTTGCTCCTGGTT 60.036 55.000 0.00 0.00 0.00 3.67
947 1044 1.611673 CCGATCTGTTGCTCCTGGTTT 60.612 52.381 0.00 0.00 0.00 3.27
948 1045 1.466167 CGATCTGTTGCTCCTGGTTTG 59.534 52.381 0.00 0.00 0.00 2.93
950 1047 1.679139 TCTGTTGCTCCTGGTTTGTG 58.321 50.000 0.00 0.00 0.00 3.33
952 1049 0.754957 TGTTGCTCCTGGTTTGTGGG 60.755 55.000 0.00 0.00 0.00 4.61
961 1058 2.489985 CCTGGTTTGTGGGTTGATGGTA 60.490 50.000 0.00 0.00 0.00 3.25
962 1059 2.819608 CTGGTTTGTGGGTTGATGGTAG 59.180 50.000 0.00 0.00 0.00 3.18
998 1097 2.046892 GTGCGTGCAGGGATCTGT 60.047 61.111 8.72 0.00 42.78 3.41
999 1098 2.103042 GTGCGTGCAGGGATCTGTC 61.103 63.158 8.72 0.00 42.78 3.51
1000 1099 2.285773 TGCGTGCAGGGATCTGTCT 61.286 57.895 8.72 0.00 42.78 3.41
1001 1100 1.812922 GCGTGCAGGGATCTGTCTG 60.813 63.158 8.72 0.00 42.78 3.51
1002 1101 1.593787 CGTGCAGGGATCTGTCTGT 59.406 57.895 0.00 0.00 42.78 3.41
1113 1212 1.156322 AGGAGGAGGAGGTGGAGGAA 61.156 60.000 0.00 0.00 0.00 3.36
1389 1500 2.462782 CGAGGAGGAGGACGACGAC 61.463 68.421 0.00 0.00 0.00 4.34
1482 1599 1.513622 GAAGCAGGAGTCGGAGGAC 59.486 63.158 0.00 0.00 43.76 3.85
1599 1731 1.553654 CGATGCGGATTTCGACGAC 59.446 57.895 0.00 0.00 42.43 4.34
2709 3214 1.743321 GCTCTAGCCGGCAGAGACAT 61.743 60.000 38.03 20.06 41.80 3.06
2847 3352 2.278332 GGGATTATGCCCCAACTCTC 57.722 55.000 0.00 0.00 42.62 3.20
2951 3465 4.387437 TTCCAAGGGAAAGACAAGGAATGT 60.387 41.667 0.00 0.00 41.28 2.71
3042 3556 7.096884 AGAGGATGATGATGATTTTGTTGTG 57.903 36.000 0.00 0.00 0.00 3.33
3891 4405 9.367444 ACTTATTATAGTAAGTGTGCTGTGTTC 57.633 33.333 17.19 0.00 41.90 3.18
3916 4430 4.843728 TCTAGTGACCATCCAAAATGTCC 58.156 43.478 0.00 0.00 0.00 4.02
4000 4514 2.364632 TCCATTACATCCACTTTGCCG 58.635 47.619 0.00 0.00 0.00 5.69
4008 4522 0.741915 TCCACTTTGCCGTTCAAACC 59.258 50.000 0.00 0.00 39.58 3.27
4014 4528 3.680786 GCCGTTCAAACCCAGGGC 61.681 66.667 4.91 0.00 0.00 5.19
4026 4540 1.212935 ACCCAGGGCTTGATGATGTAC 59.787 52.381 4.91 0.00 0.00 2.90
4197 4712 2.031560 TGCTAACTGAAACTTGTGCACG 59.968 45.455 13.13 0.65 0.00 5.34
4207 4722 2.371306 ACTTGTGCACGGGTTAACTTT 58.629 42.857 13.13 0.00 0.00 2.66
4432 4948 1.133792 ACTTTCTGTGTTGGTCTGGGG 60.134 52.381 0.00 0.00 0.00 4.96
4506 5022 1.188863 GGGCCTTCTCATGCACAAAT 58.811 50.000 0.84 0.00 0.00 2.32
5023 5539 2.271800 AGCAATTTCCGAGAAGTAGCG 58.728 47.619 0.00 0.00 0.00 4.26
5053 5569 3.118112 AGGACCAGCTGATTCCTATTGTG 60.118 47.826 26.97 5.96 38.03 3.33
5318 5865 6.931840 GCAGTTGTGGTCCCAAAATAAATTAA 59.068 34.615 0.00 0.00 0.00 1.40
5319 5866 7.117667 GCAGTTGTGGTCCCAAAATAAATTAAG 59.882 37.037 0.00 0.00 0.00 1.85
5320 5867 8.147704 CAGTTGTGGTCCCAAAATAAATTAAGT 58.852 33.333 0.00 0.00 0.00 2.24
5321 5868 9.369672 AGTTGTGGTCCCAAAATAAATTAAGTA 57.630 29.630 0.00 0.00 0.00 2.24
5322 5869 9.634163 GTTGTGGTCCCAAAATAAATTAAGTAG 57.366 33.333 0.00 0.00 0.00 2.57
5323 5870 7.832769 TGTGGTCCCAAAATAAATTAAGTAGC 58.167 34.615 0.00 0.00 0.00 3.58
5324 5871 7.672239 TGTGGTCCCAAAATAAATTAAGTAGCT 59.328 33.333 0.00 0.00 0.00 3.32
5325 5872 9.181061 GTGGTCCCAAAATAAATTAAGTAGCTA 57.819 33.333 0.00 0.00 0.00 3.32
5407 5954 9.871175 TTACCTGTCCTTTTTATAGTCCTTTTT 57.129 29.630 0.00 0.00 0.00 1.94
5631 6179 3.197116 AGGATAGGGTTGTTTCTACACCG 59.803 47.826 0.00 0.00 32.98 4.94
5751 6299 0.458543 ATGTCGTCAGTCACATCGCC 60.459 55.000 0.00 0.00 0.00 5.54
5997 6545 2.354259 GCAAGCTGCTACAGTCTTCAT 58.646 47.619 0.90 0.00 40.96 2.57
6015 6563 3.918566 TCATTGATGATGCCCTCCAATT 58.081 40.909 0.00 0.00 35.64 2.32
6016 6564 3.639561 TCATTGATGATGCCCTCCAATTG 59.360 43.478 0.00 0.00 35.64 2.32
6057 6605 5.890334 TGTGTAACTTGCTTTTCCTTTCTG 58.110 37.500 0.00 0.00 38.04 3.02
6064 6612 5.297029 ACTTGCTTTTCCTTTCTGTCAGTAC 59.703 40.000 0.00 0.00 0.00 2.73
6089 6637 8.686334 ACGTTGATTTCTGGAATTATGCTTTAT 58.314 29.630 0.00 0.00 0.00 1.40
6090 6638 9.173939 CGTTGATTTCTGGAATTATGCTTTATC 57.826 33.333 0.00 0.00 0.00 1.75
6122 6670 6.096141 ACAGAGGTGGAGCATCTTATATATCG 59.904 42.308 0.00 0.00 35.88 2.92
6123 6671 5.068460 AGAGGTGGAGCATCTTATATATCGC 59.932 44.000 0.00 0.00 34.09 4.58
6142 6690 3.383505 TCGCGAGAGAAAAATATGGAGGA 59.616 43.478 3.71 0.00 34.84 3.71
6143 6691 4.119862 CGCGAGAGAAAAATATGGAGGAA 58.880 43.478 0.00 0.00 0.00 3.36
6144 6692 4.570772 CGCGAGAGAAAAATATGGAGGAAA 59.429 41.667 0.00 0.00 0.00 3.13
6190 6738 9.571810 TTTTGAGCATGTCATTATGAACATTAC 57.428 29.630 0.00 0.00 34.17 1.89
6235 6819 4.797471 GCAGTCTGCTAGATCTGATGTAG 58.203 47.826 17.89 15.43 40.96 2.74
6320 6904 6.349363 CCTTTCTTGGTAGGAATAACTTGTGC 60.349 42.308 0.00 0.00 33.13 4.57
6332 6916 6.015772 GGAATAACTTGTGCCCTTTTCACTTA 60.016 38.462 0.00 0.00 35.58 2.24
6369 6953 4.997395 GGTATCTTTCTTGTCTGCACTTGA 59.003 41.667 0.00 0.00 0.00 3.02
6403 6987 0.107654 ATAACTGAAGCCAGGCGGTC 60.108 55.000 5.55 8.55 44.60 4.79
6472 7056 5.660417 TGCTCTCATATTCCTCTTCTGAGTT 59.340 40.000 0.00 0.00 38.61 3.01
6481 7065 6.996180 TTCCTCTTCTGAGTTTTCCTCTTA 57.004 37.500 0.00 0.00 41.11 2.10
6540 7124 6.361433 TCTAAATTCAACAAGTCCTGAACCA 58.639 36.000 0.00 0.00 34.52 3.67
6550 7134 7.454260 ACAAGTCCTGAACCATTTTTATCTC 57.546 36.000 0.00 0.00 0.00 2.75
6568 7152 3.418047 TCTCTGTGTTCATCTGTACGGA 58.582 45.455 6.90 6.90 0.00 4.69
6569 7153 3.190744 TCTCTGTGTTCATCTGTACGGAC 59.809 47.826 6.52 0.00 0.00 4.79
6602 7186 2.496070 GTTACCATCTTGCCCTTTTCCC 59.504 50.000 0.00 0.00 0.00 3.97
6609 7193 1.110518 TTGCCCTTTTCCCACCGAAC 61.111 55.000 0.00 0.00 0.00 3.95
6611 7195 1.969589 CCCTTTTCCCACCGAACCG 60.970 63.158 0.00 0.00 0.00 4.44
6621 7205 1.000385 CCACCGAACCGTACTGTTACA 60.000 52.381 2.36 0.00 0.00 2.41
6670 7254 1.968493 TGAGCTGTTTAACTCCCGAGT 59.032 47.619 0.00 0.00 44.94 4.18
6684 7268 4.576463 ACTCCCGAGTTCATGCAATTATTC 59.424 41.667 0.00 0.00 38.83 1.75
6698 7282 6.632909 TGCAATTATTCAAGGGTTCATCTTG 58.367 36.000 0.00 0.00 41.99 3.02
6710 7294 7.079451 AGGGTTCATCTTGTCTCTCTTTTTA 57.921 36.000 0.00 0.00 0.00 1.52
6722 7306 8.263940 TGTCTCTCTTTTTACGGGATTTTATG 57.736 34.615 0.00 0.00 0.00 1.90
6723 7307 7.881232 TGTCTCTCTTTTTACGGGATTTTATGT 59.119 33.333 0.00 0.00 0.00 2.29
6769 7353 5.422214 ACGATTAGATTCCAACAACCTCT 57.578 39.130 0.00 0.00 0.00 3.69
6777 7361 1.403679 TCCAACAACCTCTTTTGTGCG 59.596 47.619 0.00 0.00 39.70 5.34
6778 7362 1.535860 CCAACAACCTCTTTTGTGCGG 60.536 52.381 0.00 0.00 39.70 5.69
6785 7369 1.593196 CTCTTTTGTGCGGGACTTGA 58.407 50.000 0.31 0.00 0.00 3.02
6789 7373 3.383185 TCTTTTGTGCGGGACTTGAAAAT 59.617 39.130 0.31 0.00 0.00 1.82
6790 7374 3.810310 TTTGTGCGGGACTTGAAAATT 57.190 38.095 0.31 0.00 0.00 1.82
6795 7379 5.848406 TGTGCGGGACTTGAAAATTAAAAT 58.152 33.333 0.31 0.00 0.00 1.82
6796 7380 5.923684 TGTGCGGGACTTGAAAATTAAAATC 59.076 36.000 0.31 0.00 0.00 2.17
6797 7381 5.347635 GTGCGGGACTTGAAAATTAAAATCC 59.652 40.000 0.00 0.00 0.00 3.01
6800 7384 5.186992 CGGGACTTGAAAATTAAAATCCCCT 59.813 40.000 4.54 0.00 41.39 4.79
6802 7386 6.878923 GGGACTTGAAAATTAAAATCCCCTTG 59.121 38.462 0.00 0.00 38.95 3.61
6826 7410 7.564793 TGGTCAAGTCTTACATTATGTATGCT 58.435 34.615 5.85 7.41 37.81 3.79
6827 7411 7.495606 TGGTCAAGTCTTACATTATGTATGCTG 59.504 37.037 5.85 7.04 37.81 4.41
6828 7412 7.495934 GGTCAAGTCTTACATTATGTATGCTGT 59.504 37.037 5.85 0.00 37.81 4.40
6829 7413 9.529325 GTCAAGTCTTACATTATGTATGCTGTA 57.471 33.333 5.85 1.51 37.81 2.74
6832 7416 8.539770 AGTCTTACATTATGTATGCTGTATGC 57.460 34.615 5.85 0.00 37.81 3.14
6846 7430 3.751175 GCTGTATGCACTCCAGTTTTACA 59.249 43.478 9.92 1.91 42.31 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.115390 AGAGCCCCTGCATTAGTTAGAA 58.885 45.455 0.00 0.00 41.13 2.10
1 2 2.764269 AGAGCCCCTGCATTAGTTAGA 58.236 47.619 0.00 0.00 41.13 2.10
3 4 4.016444 CAAAAGAGCCCCTGCATTAGTTA 58.984 43.478 0.00 0.00 41.13 2.24
5 6 2.450476 CAAAAGAGCCCCTGCATTAGT 58.550 47.619 0.00 0.00 41.13 2.24
6 7 1.135721 GCAAAAGAGCCCCTGCATTAG 59.864 52.381 0.00 0.00 41.13 1.73
7 8 1.185315 GCAAAAGAGCCCCTGCATTA 58.815 50.000 0.00 0.00 41.13 1.90
8 9 0.832983 TGCAAAAGAGCCCCTGCATT 60.833 50.000 0.00 0.00 39.77 3.56
9 10 0.832983 TTGCAAAAGAGCCCCTGCAT 60.833 50.000 0.00 0.00 43.83 3.96
10 11 1.047596 TTTGCAAAAGAGCCCCTGCA 61.048 50.000 10.02 0.00 42.79 4.41
11 12 0.106521 TTTTGCAAAAGAGCCCCTGC 59.893 50.000 20.46 0.00 37.95 4.85
12 13 2.618442 TTTTTGCAAAAGAGCCCCTG 57.382 45.000 22.78 0.00 0.00 4.45
14 15 3.124578 TCATTTTTGCAAAAGAGCCCC 57.875 42.857 22.78 0.00 0.00 5.80
16 17 4.033932 ACGTTTCATTTTTGCAAAAGAGCC 59.966 37.500 22.78 11.55 0.00 4.70
18 19 7.956943 AGAAAACGTTTCATTTTTGCAAAAGAG 59.043 29.630 22.78 18.73 29.44 2.85
19 20 7.801752 AGAAAACGTTTCATTTTTGCAAAAGA 58.198 26.923 22.78 15.68 29.44 2.52
20 21 8.433585 AAGAAAACGTTTCATTTTTGCAAAAG 57.566 26.923 22.78 13.70 29.44 2.27
23 24 7.545965 TCCTAAGAAAACGTTTCATTTTTGCAA 59.454 29.630 15.01 0.00 29.44 4.08
24 25 7.036220 TCCTAAGAAAACGTTTCATTTTTGCA 58.964 30.769 15.01 0.00 29.44 4.08
25 26 7.458038 TCCTAAGAAAACGTTTCATTTTTGC 57.542 32.000 15.01 0.00 29.44 3.68
26 27 9.083080 AGTTCCTAAGAAAACGTTTCATTTTTG 57.917 29.630 15.01 7.42 32.58 2.44
27 28 9.297586 GAGTTCCTAAGAAAACGTTTCATTTTT 57.702 29.630 15.01 3.24 32.58 1.94
29 30 7.913821 GTGAGTTCCTAAGAAAACGTTTCATTT 59.086 33.333 15.01 11.20 32.58 2.32
30 31 7.282450 AGTGAGTTCCTAAGAAAACGTTTCATT 59.718 33.333 15.01 13.94 32.58 2.57
32 33 6.110707 AGTGAGTTCCTAAGAAAACGTTTCA 58.889 36.000 15.01 0.09 32.58 2.69
35 36 8.672823 ATTAAGTGAGTTCCTAAGAAAACGTT 57.327 30.769 0.00 0.00 32.58 3.99
36 37 9.939802 ATATTAAGTGAGTTCCTAAGAAAACGT 57.060 29.630 0.00 0.00 32.58 3.99
44 45 8.639761 GCAGTCCTATATTAAGTGAGTTCCTAA 58.360 37.037 0.00 0.00 0.00 2.69
45 46 7.040617 CGCAGTCCTATATTAAGTGAGTTCCTA 60.041 40.741 0.00 0.00 0.00 2.94
46 47 6.239064 CGCAGTCCTATATTAAGTGAGTTCCT 60.239 42.308 0.00 0.00 0.00 3.36
47 48 5.921408 CGCAGTCCTATATTAAGTGAGTTCC 59.079 44.000 0.00 0.00 0.00 3.62
48 49 5.921408 CCGCAGTCCTATATTAAGTGAGTTC 59.079 44.000 0.00 0.00 0.00 3.01
49 50 5.221461 CCCGCAGTCCTATATTAAGTGAGTT 60.221 44.000 0.00 0.00 0.00 3.01
50 51 4.281182 CCCGCAGTCCTATATTAAGTGAGT 59.719 45.833 0.00 0.00 0.00 3.41
51 52 4.281182 ACCCGCAGTCCTATATTAAGTGAG 59.719 45.833 0.00 0.00 0.00 3.51
52 53 4.220724 ACCCGCAGTCCTATATTAAGTGA 58.779 43.478 0.00 0.00 0.00 3.41
53 54 4.602340 ACCCGCAGTCCTATATTAAGTG 57.398 45.455 0.00 0.00 0.00 3.16
54 55 4.652421 TCAACCCGCAGTCCTATATTAAGT 59.348 41.667 0.00 0.00 0.00 2.24
55 56 5.209818 TCAACCCGCAGTCCTATATTAAG 57.790 43.478 0.00 0.00 0.00 1.85
56 57 5.617528 TTCAACCCGCAGTCCTATATTAA 57.382 39.130 0.00 0.00 0.00 1.40
57 58 5.818678 ATTCAACCCGCAGTCCTATATTA 57.181 39.130 0.00 0.00 0.00 0.98
58 59 4.706842 ATTCAACCCGCAGTCCTATATT 57.293 40.909 0.00 0.00 0.00 1.28
59 60 4.102524 TGAATTCAACCCGCAGTCCTATAT 59.897 41.667 5.45 0.00 0.00 0.86
60 61 3.452990 TGAATTCAACCCGCAGTCCTATA 59.547 43.478 5.45 0.00 0.00 1.31
61 62 2.238646 TGAATTCAACCCGCAGTCCTAT 59.761 45.455 5.45 0.00 0.00 2.57
62 63 1.626321 TGAATTCAACCCGCAGTCCTA 59.374 47.619 5.45 0.00 0.00 2.94
63 64 0.400213 TGAATTCAACCCGCAGTCCT 59.600 50.000 5.45 0.00 0.00 3.85
64 65 1.243902 TTGAATTCAACCCGCAGTCC 58.756 50.000 16.91 0.00 0.00 3.85
74 75 5.105392 AGCCTCTGTTGTTTGTTGAATTCAA 60.105 36.000 16.91 16.91 0.00 2.69
75 76 4.402155 AGCCTCTGTTGTTTGTTGAATTCA 59.598 37.500 3.38 3.38 0.00 2.57
76 77 4.936891 AGCCTCTGTTGTTTGTTGAATTC 58.063 39.130 0.00 0.00 0.00 2.17
77 78 5.343307 AAGCCTCTGTTGTTTGTTGAATT 57.657 34.783 0.00 0.00 0.00 2.17
78 79 5.343307 AAAGCCTCTGTTGTTTGTTGAAT 57.657 34.783 0.00 0.00 0.00 2.57
79 80 4.799564 AAAGCCTCTGTTGTTTGTTGAA 57.200 36.364 0.00 0.00 0.00 2.69
80 81 4.799564 AAAAGCCTCTGTTGTTTGTTGA 57.200 36.364 0.00 0.00 0.00 3.18
99 100 1.202417 TCGTGGCCGATTTTGCAAAAA 60.202 42.857 27.10 11.93 38.40 1.94
100 101 0.385751 TCGTGGCCGATTTTGCAAAA 59.614 45.000 25.76 25.76 38.40 2.44
101 102 0.318275 GTCGTGGCCGATTTTGCAAA 60.318 50.000 8.05 8.05 46.30 3.68
102 103 1.284408 GTCGTGGCCGATTTTGCAA 59.716 52.632 0.00 0.00 46.30 4.08
103 104 2.950673 GTCGTGGCCGATTTTGCA 59.049 55.556 0.00 0.00 46.30 4.08
104 105 2.202298 CGTCGTGGCCGATTTTGC 60.202 61.111 0.00 0.00 46.30 3.68
105 106 2.030401 TCCGTCGTGGCCGATTTTG 61.030 57.895 0.00 0.00 46.30 2.44
106 107 2.030958 GTCCGTCGTGGCCGATTTT 61.031 57.895 0.00 0.00 46.30 1.82
107 108 2.433664 GTCCGTCGTGGCCGATTT 60.434 61.111 0.00 0.00 46.30 2.17
108 109 4.789075 CGTCCGTCGTGGCCGATT 62.789 66.667 0.00 0.00 46.30 3.34
114 115 2.797866 CTTCTGGTCGTCCGTCGTGG 62.798 65.000 0.00 0.00 40.80 4.94
115 116 1.442184 CTTCTGGTCGTCCGTCGTG 60.442 63.158 0.00 0.00 40.80 4.35
116 117 2.952245 CTTCTGGTCGTCCGTCGT 59.048 61.111 0.00 0.00 40.80 4.34
117 118 2.504244 GCTTCTGGTCGTCCGTCG 60.504 66.667 0.00 0.00 41.41 5.12
118 119 2.267681 ATCGCTTCTGGTCGTCCGTC 62.268 60.000 0.00 0.00 36.30 4.79
119 120 1.028330 TATCGCTTCTGGTCGTCCGT 61.028 55.000 0.00 0.00 36.30 4.69
120 121 0.317103 CTATCGCTTCTGGTCGTCCG 60.317 60.000 0.00 0.00 36.30 4.79
121 122 0.595310 GCTATCGCTTCTGGTCGTCC 60.595 60.000 0.00 0.00 0.00 4.79
122 123 0.382515 AGCTATCGCTTCTGGTCGTC 59.617 55.000 0.00 0.00 46.47 4.20
123 124 0.101399 CAGCTATCGCTTCTGGTCGT 59.899 55.000 0.00 0.00 46.47 4.34
124 125 0.596083 CCAGCTATCGCTTCTGGTCG 60.596 60.000 0.00 0.00 46.47 4.79
125 126 3.280920 CCAGCTATCGCTTCTGGTC 57.719 57.895 0.00 0.00 46.47 4.02
127 128 2.029838 AAACCAGCTATCGCTTCTGG 57.970 50.000 6.01 6.01 46.47 3.86
128 129 5.986135 ACTAATAAACCAGCTATCGCTTCTG 59.014 40.000 0.00 0.00 46.47 3.02
129 130 6.163135 ACTAATAAACCAGCTATCGCTTCT 57.837 37.500 0.00 0.00 46.47 2.85
130 131 7.941795 TTACTAATAAACCAGCTATCGCTTC 57.058 36.000 0.00 0.00 46.47 3.86
131 132 8.726870 TTTTACTAATAAACCAGCTATCGCTT 57.273 30.769 0.00 0.00 35.66 4.68
132 133 8.726870 TTTTTACTAATAAACCAGCTATCGCT 57.273 30.769 0.00 0.00 37.17 4.93
159 160 8.826765 CCTCTCTATCTCTATCTCTCTACCTTT 58.173 40.741 0.00 0.00 0.00 3.11
160 161 7.962003 ACCTCTCTATCTCTATCTCTCTACCTT 59.038 40.741 0.00 0.00 0.00 3.50
161 162 7.488205 ACCTCTCTATCTCTATCTCTCTACCT 58.512 42.308 0.00 0.00 0.00 3.08
162 163 7.735326 ACCTCTCTATCTCTATCTCTCTACC 57.265 44.000 0.00 0.00 0.00 3.18
163 164 9.696572 TCTACCTCTCTATCTCTATCTCTCTAC 57.303 40.741 0.00 0.00 0.00 2.59
164 165 9.922477 CTCTACCTCTCTATCTCTATCTCTCTA 57.078 40.741 0.00 0.00 0.00 2.43
165 166 8.624670 TCTCTACCTCTCTATCTCTATCTCTCT 58.375 40.741 0.00 0.00 0.00 3.10
166 167 8.824756 TCTCTACCTCTCTATCTCTATCTCTC 57.175 42.308 0.00 0.00 0.00 3.20
173 174 9.790297 AATCTCTATCTCTACCTCTCTATCTCT 57.210 37.037 0.00 0.00 0.00 3.10
178 179 8.537016 GCAGTAATCTCTATCTCTACCTCTCTA 58.463 40.741 0.00 0.00 0.00 2.43
179 180 7.394816 GCAGTAATCTCTATCTCTACCTCTCT 58.605 42.308 0.00 0.00 0.00 3.10
180 181 6.598064 GGCAGTAATCTCTATCTCTACCTCTC 59.402 46.154 0.00 0.00 0.00 3.20
181 182 6.481643 GGCAGTAATCTCTATCTCTACCTCT 58.518 44.000 0.00 0.00 0.00 3.69
182 183 5.650703 GGGCAGTAATCTCTATCTCTACCTC 59.349 48.000 0.00 0.00 0.00 3.85
183 184 5.517655 GGGGCAGTAATCTCTATCTCTACCT 60.518 48.000 0.00 0.00 0.00 3.08
184 185 4.707934 GGGGCAGTAATCTCTATCTCTACC 59.292 50.000 0.00 0.00 0.00 3.18
185 186 5.326069 TGGGGCAGTAATCTCTATCTCTAC 58.674 45.833 0.00 0.00 0.00 2.59
186 187 5.600669 TGGGGCAGTAATCTCTATCTCTA 57.399 43.478 0.00 0.00 0.00 2.43
187 188 4.477536 TGGGGCAGTAATCTCTATCTCT 57.522 45.455 0.00 0.00 0.00 3.10
188 189 4.591072 ACTTGGGGCAGTAATCTCTATCTC 59.409 45.833 0.00 0.00 0.00 2.75
189 190 4.561752 ACTTGGGGCAGTAATCTCTATCT 58.438 43.478 0.00 0.00 0.00 1.98
190 191 4.965200 ACTTGGGGCAGTAATCTCTATC 57.035 45.455 0.00 0.00 0.00 2.08
191 192 4.841246 CCTACTTGGGGCAGTAATCTCTAT 59.159 45.833 0.00 0.00 0.00 1.98
192 193 4.078805 TCCTACTTGGGGCAGTAATCTCTA 60.079 45.833 0.00 0.00 36.20 2.43
193 194 3.041946 CCTACTTGGGGCAGTAATCTCT 58.958 50.000 0.00 0.00 0.00 3.10
194 195 3.039011 TCCTACTTGGGGCAGTAATCTC 58.961 50.000 0.00 0.00 36.20 2.75
195 196 3.130734 TCCTACTTGGGGCAGTAATCT 57.869 47.619 0.00 0.00 36.20 2.40
196 197 3.926058 TTCCTACTTGGGGCAGTAATC 57.074 47.619 0.00 0.00 36.20 1.75
197 198 4.668138 TTTTCCTACTTGGGGCAGTAAT 57.332 40.909 0.00 0.00 36.20 1.89
198 199 4.456662 TTTTTCCTACTTGGGGCAGTAA 57.543 40.909 0.00 0.00 36.20 2.24
229 230 2.892784 AGATAACGGTTAGCTGGAGC 57.107 50.000 17.09 0.00 42.49 4.70
230 231 7.787725 ATAAAAAGATAACGGTTAGCTGGAG 57.212 36.000 18.34 0.00 31.22 3.86
231 232 8.570068 AAATAAAAAGATAACGGTTAGCTGGA 57.430 30.769 18.34 5.88 31.22 3.86
232 233 9.634163 AAAAATAAAAAGATAACGGTTAGCTGG 57.366 29.630 18.34 0.00 31.22 4.85
255 256 7.042523 GGTTAGTACGTAGCTGTTTCTCAAAAA 60.043 37.037 0.00 0.00 0.00 1.94
256 257 6.421801 GGTTAGTACGTAGCTGTTTCTCAAAA 59.578 38.462 0.00 0.00 0.00 2.44
257 258 5.922544 GGTTAGTACGTAGCTGTTTCTCAAA 59.077 40.000 0.00 0.00 0.00 2.69
258 259 5.464168 GGTTAGTACGTAGCTGTTTCTCAA 58.536 41.667 0.00 0.00 0.00 3.02
259 260 4.378770 CGGTTAGTACGTAGCTGTTTCTCA 60.379 45.833 0.00 0.00 0.00 3.27
260 261 4.094212 CGGTTAGTACGTAGCTGTTTCTC 58.906 47.826 0.00 0.00 0.00 2.87
261 262 3.503748 ACGGTTAGTACGTAGCTGTTTCT 59.496 43.478 0.00 0.00 43.60 2.52
262 263 3.826466 ACGGTTAGTACGTAGCTGTTTC 58.174 45.455 0.00 0.00 43.60 2.78
263 264 3.253188 TGACGGTTAGTACGTAGCTGTTT 59.747 43.478 0.00 0.00 45.68 2.83
264 265 2.813754 TGACGGTTAGTACGTAGCTGTT 59.186 45.455 0.00 0.00 45.68 3.16
265 266 2.426522 TGACGGTTAGTACGTAGCTGT 58.573 47.619 0.00 0.00 45.68 4.40
266 267 3.311871 AGATGACGGTTAGTACGTAGCTG 59.688 47.826 0.00 0.00 45.68 4.24
267 268 3.539604 AGATGACGGTTAGTACGTAGCT 58.460 45.455 0.00 0.00 45.68 3.32
268 269 3.959573 AGATGACGGTTAGTACGTAGC 57.040 47.619 0.00 0.00 45.68 3.58
300 301 2.632541 CGGGTGCGTGCGTAAAAA 59.367 55.556 0.00 0.00 0.00 1.94
301 302 3.347405 CCGGGTGCGTGCGTAAAA 61.347 61.111 0.00 0.00 0.00 1.52
309 310 3.894547 CTGCTAAACCCGGGTGCGT 62.895 63.158 31.05 18.51 0.00 5.24
395 400 1.531149 CTGGCCGTTTTATCTATGGCG 59.469 52.381 0.00 0.00 46.49 5.69
492 519 2.672181 TTTGGTAGGGTAGGGCGCC 61.672 63.158 21.18 21.18 0.00 6.53
493 520 1.450848 GTTTGGTAGGGTAGGGCGC 60.451 63.158 0.00 0.00 0.00 6.53
494 521 1.222661 GGTTTGGTAGGGTAGGGCG 59.777 63.158 0.00 0.00 0.00 6.13
495 522 0.034767 GTGGTTTGGTAGGGTAGGGC 60.035 60.000 0.00 0.00 0.00 5.19
496 523 0.622136 GGTGGTTTGGTAGGGTAGGG 59.378 60.000 0.00 0.00 0.00 3.53
513 540 4.026357 GAGGGAGGAGGGGGTGGT 62.026 72.222 0.00 0.00 0.00 4.16
514 541 3.700350 AGAGGGAGGAGGGGGTGG 61.700 72.222 0.00 0.00 0.00 4.61
515 542 2.041405 GAGAGGGAGGAGGGGGTG 60.041 72.222 0.00 0.00 0.00 4.61
516 543 3.369388 GGAGAGGGAGGAGGGGGT 61.369 72.222 0.00 0.00 0.00 4.95
519 546 2.960879 TTGGGGAGAGGGAGGAGGG 61.961 68.421 0.00 0.00 0.00 4.30
522 549 2.454941 GGTTGGGGAGAGGGAGGA 59.545 66.667 0.00 0.00 0.00 3.71
525 552 4.364686 GGGGGTTGGGGAGAGGGA 62.365 72.222 0.00 0.00 0.00 4.20
539 566 0.417437 AATTTGGAAAGGGGAGGGGG 59.583 55.000 0.00 0.00 0.00 5.40
546 577 1.182667 GGGTCGGAATTTGGAAAGGG 58.817 55.000 0.00 0.00 0.00 3.95
584 615 7.830099 ATTCAAATCCTTGAGTTCTGAACTT 57.170 32.000 22.80 8.16 42.48 2.66
592 623 5.011023 GTGGTGGAATTCAAATCCTTGAGTT 59.989 40.000 7.93 0.00 42.37 3.01
633 697 2.240162 CTTCCTTCCTTCCCGACGGG 62.240 65.000 27.86 27.86 46.11 5.28
708 793 2.650813 AATAGGCAAGGCGAGGCGAG 62.651 60.000 0.00 0.00 36.55 5.03
709 794 2.252072 AAATAGGCAAGGCGAGGCGA 62.252 55.000 0.00 0.00 36.55 5.54
710 795 1.819632 AAATAGGCAAGGCGAGGCG 60.820 57.895 0.00 0.00 36.55 5.52
711 796 1.728490 CCAAATAGGCAAGGCGAGGC 61.728 60.000 0.00 0.00 0.00 4.70
712 797 1.103398 CCCAAATAGGCAAGGCGAGG 61.103 60.000 0.00 0.00 35.39 4.63
713 798 0.394352 ACCCAAATAGGCAAGGCGAG 60.394 55.000 0.00 0.00 35.39 5.03
714 799 0.679640 CACCCAAATAGGCAAGGCGA 60.680 55.000 0.00 0.00 35.39 5.54
715 800 1.809207 CACCCAAATAGGCAAGGCG 59.191 57.895 0.00 0.00 35.39 5.52
716 801 1.517361 GCACCCAAATAGGCAAGGC 59.483 57.895 0.00 0.00 35.39 4.35
717 802 0.324645 AGGCACCCAAATAGGCAAGG 60.325 55.000 0.00 0.00 35.39 3.61
718 803 1.560505 AAGGCACCCAAATAGGCAAG 58.439 50.000 0.00 0.00 35.39 4.01
719 804 2.022718 AAAGGCACCCAAATAGGCAA 57.977 45.000 0.00 0.00 35.39 4.52
766 851 3.577313 GAATTGAGGAGGCGCGGC 61.577 66.667 27.06 27.06 0.00 6.53
767 852 1.884926 GAGAATTGAGGAGGCGCGG 60.885 63.158 8.83 0.00 0.00 6.46
770 855 1.424493 GCACGAGAATTGAGGAGGCG 61.424 60.000 0.00 0.00 0.00 5.52
771 856 1.424493 CGCACGAGAATTGAGGAGGC 61.424 60.000 0.00 0.00 0.00 4.70
820 905 1.320344 GGGGAGTTTCATTTCGGGGC 61.320 60.000 0.00 0.00 0.00 5.80
831 916 3.993658 AAAAAGGAAGGAGGGGAGTTT 57.006 42.857 0.00 0.00 0.00 2.66
864 961 2.028567 GGTGAAGAACAGTGGGAGAGAG 60.029 54.545 0.00 0.00 0.00 3.20
871 968 2.370189 AGAAGAGGGTGAAGAACAGTGG 59.630 50.000 0.00 0.00 0.00 4.00
927 1024 0.036010 AACCAGGAGCAACAGATCGG 60.036 55.000 0.00 0.00 0.00 4.18
939 1036 1.480312 CCATCAACCCACAAACCAGGA 60.480 52.381 0.00 0.00 0.00 3.86
940 1037 0.968405 CCATCAACCCACAAACCAGG 59.032 55.000 0.00 0.00 0.00 4.45
942 1039 2.870175 CTACCATCAACCCACAAACCA 58.130 47.619 0.00 0.00 0.00 3.67
945 1042 2.107378 TCAGCTACCATCAACCCACAAA 59.893 45.455 0.00 0.00 0.00 2.83
946 1043 1.702401 TCAGCTACCATCAACCCACAA 59.298 47.619 0.00 0.00 0.00 3.33
947 1044 1.003118 GTCAGCTACCATCAACCCACA 59.997 52.381 0.00 0.00 0.00 4.17
948 1045 1.279271 AGTCAGCTACCATCAACCCAC 59.721 52.381 0.00 0.00 0.00 4.61
950 1047 2.359900 CAAGTCAGCTACCATCAACCC 58.640 52.381 0.00 0.00 0.00 4.11
952 1049 3.334583 TCCAAGTCAGCTACCATCAAC 57.665 47.619 0.00 0.00 0.00 3.18
961 1058 1.251251 GCCACAAATCCAAGTCAGCT 58.749 50.000 0.00 0.00 0.00 4.24
962 1059 0.109597 CGCCACAAATCCAAGTCAGC 60.110 55.000 0.00 0.00 0.00 4.26
998 1097 1.381928 GGCGACCATAGACGGACAGA 61.382 60.000 0.00 0.00 0.00 3.41
999 1098 1.065928 GGCGACCATAGACGGACAG 59.934 63.158 0.00 0.00 0.00 3.51
1000 1099 2.767445 CGGCGACCATAGACGGACA 61.767 63.158 0.00 0.00 0.00 4.02
1001 1100 2.025727 CGGCGACCATAGACGGAC 59.974 66.667 0.00 0.00 0.00 4.79
1130 1238 4.717629 CCTCGTCGGAGCACGCAA 62.718 66.667 0.00 0.00 43.86 4.85
1224 1332 3.347590 TCCTCCTCCTCCTCCGCA 61.348 66.667 0.00 0.00 0.00 5.69
1367 1478 0.964358 GTCGTCCTCCTCCTCGGAAA 60.964 60.000 0.00 0.00 42.53 3.13
1599 1731 0.466555 AATCCTCGTCCTCCTCCTCG 60.467 60.000 0.00 0.00 0.00 4.63
2640 3145 2.266055 GCCTCGGACAGGTTCCTG 59.734 66.667 16.25 16.25 45.61 3.86
2706 3211 6.350629 TCGTAATCATCATCATCCTCATGT 57.649 37.500 0.00 0.00 0.00 3.21
2709 3214 5.079643 TCCTCGTAATCATCATCATCCTCA 58.920 41.667 0.00 0.00 0.00 3.86
2846 3351 3.618171 GGTCTAACCTTTGTGGCGA 57.382 52.632 0.00 0.00 40.22 5.54
3042 3556 0.109226 CTTCCTCCACGTCGTCCTTC 60.109 60.000 0.00 0.00 0.00 3.46
3090 3604 2.176889 CTCGTCTTCCTCCCAACCTTA 58.823 52.381 0.00 0.00 0.00 2.69
3875 4389 5.753921 ACTAGAAAGAACACAGCACACTTAC 59.246 40.000 0.00 0.00 0.00 2.34
3891 4405 6.127897 GGACATTTTGGATGGTCACTAGAAAG 60.128 42.308 0.00 0.00 32.00 2.62
3916 4430 9.113876 CTGCTTAAAACTTTTAATCCACTAACG 57.886 33.333 7.08 0.00 0.00 3.18
4000 4514 3.125520 TCAAGCCCTGGGTTTGAAC 57.874 52.632 34.23 9.86 46.79 3.18
4008 4522 2.715749 TGTACATCATCAAGCCCTGG 57.284 50.000 0.00 0.00 0.00 4.45
4014 4528 9.608617 GCAGAAATATGAATGTACATCATCAAG 57.391 33.333 18.19 9.37 38.44 3.02
4026 4540 7.928103 AGCTCTTACTTGCAGAAATATGAATG 58.072 34.615 0.00 0.00 0.00 2.67
4128 4643 4.475763 TGTTGTCATGCGAAACGTAATT 57.524 36.364 0.00 0.00 0.00 1.40
4169 4684 7.390440 TGCACAAGTTTCAGTTAGCATAGTAAT 59.610 33.333 0.00 0.00 0.00 1.89
4432 4948 3.259625 AGTTGCCTTCTGGTACTTCTCTC 59.740 47.826 0.00 0.00 35.27 3.20
5023 5539 0.322816 TCAGCTGGTCCTTGGCATTC 60.323 55.000 15.13 0.00 0.00 2.67
5053 5569 4.698583 AATGTGCTTGATGCTCTTCTTC 57.301 40.909 0.00 0.00 43.37 2.87
5318 5865 8.580720 CACATTTCCAGTATAGATGTAGCTACT 58.419 37.037 23.84 10.16 30.39 2.57
5319 5866 8.361139 ACACATTTCCAGTATAGATGTAGCTAC 58.639 37.037 17.30 17.30 30.39 3.58
5320 5867 8.478775 ACACATTTCCAGTATAGATGTAGCTA 57.521 34.615 0.00 0.00 30.39 3.32
5321 5868 7.288852 AGACACATTTCCAGTATAGATGTAGCT 59.711 37.037 0.00 0.00 30.39 3.32
5322 5869 7.437748 AGACACATTTCCAGTATAGATGTAGC 58.562 38.462 0.00 0.00 30.39 3.58
5323 5870 8.633561 TGAGACACATTTCCAGTATAGATGTAG 58.366 37.037 0.00 0.00 30.39 2.74
5324 5871 8.533569 TGAGACACATTTCCAGTATAGATGTA 57.466 34.615 0.00 0.00 30.39 2.29
5325 5872 7.418368 CCTGAGACACATTTCCAGTATAGATGT 60.418 40.741 0.00 0.00 0.00 3.06
5407 5954 1.176527 GGCCAACAGCATAGCAGAAA 58.823 50.000 0.00 0.00 46.50 2.52
5497 6045 6.674419 AGGATGAGAGGTTAGTTCCAGTTAAT 59.326 38.462 0.00 0.00 0.00 1.40
5631 6179 5.230182 CAACAATGGCTAGGAAAAGGAAAC 58.770 41.667 0.00 0.00 0.00 2.78
5751 6299 8.110860 ACCACCTACTTCAAGAAAACATATTG 57.889 34.615 0.00 0.00 0.00 1.90
5997 6545 3.025978 GACAATTGGAGGGCATCATCAA 58.974 45.455 10.83 0.00 0.00 2.57
6030 6578 5.248870 AGGAAAAGCAAGTTACACAGTTG 57.751 39.130 0.00 0.00 38.69 3.16
6057 6605 6.481954 AATTCCAGAAATCAACGTACTGAC 57.518 37.500 0.00 0.00 0.00 3.51
6064 6612 9.173939 GATAAAGCATAATTCCAGAAATCAACG 57.826 33.333 0.00 0.00 0.00 4.10
6102 6650 4.045104 CGCGATATATAAGATGCTCCACC 58.955 47.826 0.00 0.00 0.00 4.61
6122 6670 6.436843 TTTTCCTCCATATTTTTCTCTCGC 57.563 37.500 0.00 0.00 0.00 5.03
6190 6738 9.381033 CTGCTCCTATATCCTATTCTCAATTTG 57.619 37.037 0.00 0.00 0.00 2.32
6213 6761 3.731652 ACATCAGATCTAGCAGACTGC 57.268 47.619 20.12 20.12 45.46 4.40
6313 6897 3.632145 CACTAAGTGAAAAGGGCACAAGT 59.368 43.478 0.00 0.00 38.70 3.16
6320 6904 5.368989 ACTGAGAACACTAAGTGAAAAGGG 58.631 41.667 0.00 0.00 36.96 3.95
6332 6916 5.244178 AGAAAGATACCGAACTGAGAACACT 59.756 40.000 0.00 0.00 0.00 3.55
6369 6953 2.441001 CAGTTATGAGAGGGGGCTTCAT 59.559 50.000 0.00 0.00 0.00 2.57
6481 7065 8.516198 ACCCTAGAAGAAGAATATAGGACTCTT 58.484 37.037 0.00 0.00 35.97 2.85
6530 7114 6.431234 ACACAGAGATAAAAATGGTTCAGGAC 59.569 38.462 0.00 0.00 0.00 3.85
6540 7124 8.873830 CGTACAGATGAACACAGAGATAAAAAT 58.126 33.333 0.00 0.00 0.00 1.82
6550 7134 3.245797 CAGTCCGTACAGATGAACACAG 58.754 50.000 0.00 0.00 0.00 3.66
6602 7186 2.420628 TGTAACAGTACGGTTCGGTG 57.579 50.000 14.85 0.00 32.40 4.94
6609 7193 2.732500 TGCACGAAATGTAACAGTACGG 59.267 45.455 0.00 0.00 32.40 4.02
6611 7195 5.779806 ATCTGCACGAAATGTAACAGTAC 57.220 39.130 0.00 0.00 36.08 2.73
6621 7205 7.120579 TCAACAATAGGTTAATCTGCACGAAAT 59.879 33.333 0.00 0.00 37.72 2.17
6670 7254 6.602410 TGAACCCTTGAATAATTGCATGAA 57.398 33.333 0.00 0.00 0.00 2.57
6684 7268 4.550076 AGAGAGACAAGATGAACCCTTG 57.450 45.455 0.00 0.00 44.75 3.61
6698 7282 8.265165 ACATAAAATCCCGTAAAAAGAGAGAC 57.735 34.615 0.00 0.00 0.00 3.36
6740 7324 6.049955 TGTTGGAATCTAATCGTTCCTTCT 57.950 37.500 5.81 0.00 43.41 2.85
6748 7332 6.743575 AAAGAGGTTGTTGGAATCTAATCG 57.256 37.500 0.00 0.00 0.00 3.34
6769 7353 3.810310 ATTTTCAAGTCCCGCACAAAA 57.190 38.095 0.00 0.00 0.00 2.44
6777 7361 6.620877 AGGGGATTTTAATTTTCAAGTCCC 57.379 37.500 13.09 13.09 42.62 4.46
6778 7362 6.878923 CCAAGGGGATTTTAATTTTCAAGTCC 59.121 38.462 0.00 0.00 35.59 3.85
6785 7369 7.292356 AGACTTGACCAAGGGGATTTTAATTTT 59.708 33.333 13.58 0.00 42.53 1.82
6789 7373 5.333566 AGACTTGACCAAGGGGATTTTAA 57.666 39.130 13.58 0.00 42.53 1.52
6790 7374 5.333566 AAGACTTGACCAAGGGGATTTTA 57.666 39.130 13.58 0.00 42.53 1.52
6795 7379 2.696775 TGTAAGACTTGACCAAGGGGA 58.303 47.619 13.58 0.00 42.53 4.81
6796 7380 3.721087 ATGTAAGACTTGACCAAGGGG 57.279 47.619 13.58 0.00 42.53 4.79
6797 7381 6.180472 ACATAATGTAAGACTTGACCAAGGG 58.820 40.000 13.58 0.00 42.53 3.95
6800 7384 8.046708 AGCATACATAATGTAAGACTTGACCAA 58.953 33.333 0.00 0.00 36.31 3.67
6802 7386 7.495934 ACAGCATACATAATGTAAGACTTGACC 59.504 37.037 0.00 0.00 36.31 4.02
6826 7410 6.892658 AAATGTAAAACTGGAGTGCATACA 57.107 33.333 0.00 0.00 0.00 2.29
6830 7414 9.019656 ACATATTAAATGTAAAACTGGAGTGCA 57.980 29.630 0.00 0.00 0.00 4.57
6831 7415 9.855021 AACATATTAAATGTAAAACTGGAGTGC 57.145 29.630 4.43 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.