Multiple sequence alignment - TraesCS2B01G107900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G107900 chr2B 100.000 3559 0 0 1 3559 69002714 69006272 0.000000e+00 6573
1 TraesCS2B01G107900 chr2B 84.594 1441 193 18 1032 2453 69036049 69034619 0.000000e+00 1404
2 TraesCS2B01G107900 chr2B 80.278 1653 219 55 1051 2642 68580084 68578478 0.000000e+00 1147
3 TraesCS2B01G107900 chr2B 88.980 245 23 4 24 266 164095236 164094994 2.080000e-77 300
4 TraesCS2B01G107900 chr2B 79.915 234 18 10 661 875 69036390 69036167 1.030000e-30 145
5 TraesCS2B01G107900 chr2A 83.076 2263 293 43 796 3008 47796318 47794096 0.000000e+00 1975
6 TraesCS2B01G107900 chr2A 92.033 1205 79 8 1035 2230 47761505 47762701 0.000000e+00 1677
7 TraesCS2B01G107900 chr2A 85.142 1447 175 24 1031 2453 47829307 47827877 0.000000e+00 1445
8 TraesCS2B01G107900 chr2A 94.813 829 33 2 2288 3107 47762741 47763568 0.000000e+00 1284
9 TraesCS2B01G107900 chr2A 94.816 463 21 2 3099 3559 47763754 47764215 0.000000e+00 719
10 TraesCS2B01G107900 chr2A 85.806 310 35 5 1021 1327 47825316 47825013 1.590000e-83 320
11 TraesCS2B01G107900 chr2D 83.564 1442 195 28 1032 2453 43988241 43986822 0.000000e+00 1312
12 TraesCS2B01G107900 chr2D 81.427 1163 167 28 1140 2282 43974757 43975890 0.000000e+00 905
13 TraesCS2B01G107900 chr2D 83.750 400 24 16 610 987 43977775 43978155 1.220000e-89 340
14 TraesCS2B01G107900 chr5B 77.123 1307 246 32 1046 2344 479816094 479817355 0.000000e+00 708
15 TraesCS2B01G107900 chr5A 79.070 645 106 18 1046 1683 505489439 505490061 1.980000e-112 416
16 TraesCS2B01G107900 chr5A 79.540 391 70 6 1041 1428 505352237 505352620 1.630000e-68 270
17 TraesCS2B01G107900 chr6B 91.575 273 19 4 3 272 671234242 671233971 1.210000e-99 374
18 TraesCS2B01G107900 chr1B 91.111 270 20 4 6 272 385217099 385216831 2.610000e-96 363
19 TraesCS2B01G107900 chr1B 88.278 273 28 4 1 272 123435274 123435543 1.230000e-84 324
20 TraesCS2B01G107900 chr1B 89.787 235 21 3 1 234 392440940 392441172 7.470000e-77 298
21 TraesCS2B01G107900 chr1B 87.170 265 30 4 9 272 628912911 628912650 7.470000e-77 298
22 TraesCS2B01G107900 chr1B 79.882 169 20 5 269 433 449265242 449265400 1.040000e-20 111
23 TraesCS2B01G107900 chr5D 80.300 467 82 8 1125 1586 399928140 399928601 9.460000e-91 344
24 TraesCS2B01G107900 chr4B 89.259 270 25 4 3 270 89279964 89280231 5.690000e-88 335
25 TraesCS2B01G107900 chr4B 87.823 271 28 5 3 270 636928225 636928493 2.670000e-81 313
26 TraesCS2B01G107900 chr4B 83.333 168 23 5 281 444 314411508 314411674 2.210000e-32 150
27 TraesCS2B01G107900 chr7B 88.235 272 27 5 3 270 66892701 66892431 1.590000e-83 320
28 TraesCS2B01G107900 chr3A 86.145 166 21 2 269 432 457637606 457637441 1.020000e-40 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G107900 chr2B 69002714 69006272 3558 False 6573.000000 6573 100.000000 1 3559 1 chr2B.!!$F1 3558
1 TraesCS2B01G107900 chr2B 68578478 68580084 1606 True 1147.000000 1147 80.278000 1051 2642 1 chr2B.!!$R1 1591
2 TraesCS2B01G107900 chr2B 69034619 69036390 1771 True 774.500000 1404 82.254500 661 2453 2 chr2B.!!$R3 1792
3 TraesCS2B01G107900 chr2A 47794096 47796318 2222 True 1975.000000 1975 83.076000 796 3008 1 chr2A.!!$R1 2212
4 TraesCS2B01G107900 chr2A 47761505 47764215 2710 False 1226.666667 1677 93.887333 1035 3559 3 chr2A.!!$F1 2524
5 TraesCS2B01G107900 chr2A 47825013 47829307 4294 True 882.500000 1445 85.474000 1021 2453 2 chr2A.!!$R2 1432
6 TraesCS2B01G107900 chr2D 43986822 43988241 1419 True 1312.000000 1312 83.564000 1032 2453 1 chr2D.!!$R1 1421
7 TraesCS2B01G107900 chr2D 43974757 43978155 3398 False 622.500000 905 82.588500 610 2282 2 chr2D.!!$F1 1672
8 TraesCS2B01G107900 chr5B 479816094 479817355 1261 False 708.000000 708 77.123000 1046 2344 1 chr5B.!!$F1 1298
9 TraesCS2B01G107900 chr5A 505489439 505490061 622 False 416.000000 416 79.070000 1046 1683 1 chr5A.!!$F2 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
785 786 0.039437 CGACGCCGGTAAGCAGATAT 60.039 55.0 1.9 0.0 0.00 1.63 F
967 991 0.041238 ATCGTCCCCTGACTTCCTGA 59.959 55.0 0.0 0.0 39.47 3.86 F
2060 2157 0.037326 TCAGCGCTTGTTGGTCTAGG 60.037 55.0 7.5 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2020 2117 0.465642 GGATCCACCCCGGTCAAATC 60.466 60.0 6.95 0.0 35.57 2.17 R
2127 2236 0.601576 AATGCAACACACGCCTACGA 60.602 50.0 0.00 0.0 43.93 3.43 R
2908 3081 0.678395 ATTGACACCAAATTGCGCCA 59.322 45.0 4.18 0.0 35.67 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.132863 GGAACACGCCGAACTATGT 57.867 52.632 0.00 0.00 0.00 2.29
20 21 0.719465 GGAACACGCCGAACTATGTG 59.281 55.000 0.00 0.00 38.28 3.21
21 22 1.670674 GGAACACGCCGAACTATGTGA 60.671 52.381 0.00 0.00 36.25 3.58
22 23 2.268298 GAACACGCCGAACTATGTGAT 58.732 47.619 0.00 0.00 36.25 3.06
23 24 1.640428 ACACGCCGAACTATGTGATG 58.360 50.000 0.00 0.00 36.25 3.07
24 25 1.203758 ACACGCCGAACTATGTGATGA 59.796 47.619 0.00 0.00 36.25 2.92
25 26 2.267426 CACGCCGAACTATGTGATGAA 58.733 47.619 0.00 0.00 34.29 2.57
26 27 2.029244 CACGCCGAACTATGTGATGAAC 59.971 50.000 0.00 0.00 34.29 3.18
27 28 2.094182 ACGCCGAACTATGTGATGAACT 60.094 45.455 0.00 0.00 0.00 3.01
28 29 3.129813 ACGCCGAACTATGTGATGAACTA 59.870 43.478 0.00 0.00 0.00 2.24
29 30 4.109766 CGCCGAACTATGTGATGAACTAA 58.890 43.478 0.00 0.00 0.00 2.24
30 31 4.745125 CGCCGAACTATGTGATGAACTAAT 59.255 41.667 0.00 0.00 0.00 1.73
31 32 5.234329 CGCCGAACTATGTGATGAACTAATT 59.766 40.000 0.00 0.00 0.00 1.40
32 33 6.422223 GCCGAACTATGTGATGAACTAATTG 58.578 40.000 0.00 0.00 0.00 2.32
33 34 6.511767 GCCGAACTATGTGATGAACTAATTGG 60.512 42.308 0.00 0.00 0.00 3.16
34 35 6.538742 CCGAACTATGTGATGAACTAATTGGT 59.461 38.462 0.00 0.00 0.00 3.67
35 36 7.065803 CCGAACTATGTGATGAACTAATTGGTT 59.934 37.037 6.93 6.93 0.00 3.67
36 37 8.450964 CGAACTATGTGATGAACTAATTGGTTT 58.549 33.333 8.72 0.00 0.00 3.27
48 49 9.347934 TGAACTAATTGGTTTTATTTGTATGCG 57.652 29.630 8.72 0.00 0.00 4.73
49 50 9.562583 GAACTAATTGGTTTTATTTGTATGCGA 57.437 29.630 8.72 0.00 0.00 5.10
50 51 9.915629 AACTAATTGGTTTTATTTGTATGCGAA 57.084 25.926 0.65 0.00 0.00 4.70
51 52 9.915629 ACTAATTGGTTTTATTTGTATGCGAAA 57.084 25.926 0.00 0.00 0.00 3.46
56 57 8.818141 TGGTTTTATTTGTATGCGAAAATTCA 57.182 26.923 0.00 0.00 0.00 2.57
57 58 8.704234 TGGTTTTATTTGTATGCGAAAATTCAC 58.296 29.630 0.00 0.00 0.00 3.18
58 59 7.890717 GGTTTTATTTGTATGCGAAAATTCACG 59.109 33.333 0.00 0.00 0.00 4.35
68 69 4.038725 CGAAAATTCACGCCAAAACATG 57.961 40.909 0.00 0.00 0.00 3.21
69 70 3.661419 CGAAAATTCACGCCAAAACATGC 60.661 43.478 0.00 0.00 0.00 4.06
70 71 1.794512 AATTCACGCCAAAACATGCC 58.205 45.000 0.00 0.00 0.00 4.40
71 72 0.388391 ATTCACGCCAAAACATGCCG 60.388 50.000 0.00 0.00 0.00 5.69
72 73 1.448119 TTCACGCCAAAACATGCCGA 61.448 50.000 0.00 0.00 0.00 5.54
73 74 1.007964 CACGCCAAAACATGCCGAA 60.008 52.632 0.00 0.00 0.00 4.30
74 75 1.007849 ACGCCAAAACATGCCGAAC 60.008 52.632 0.00 0.00 0.00 3.95
75 76 1.732683 CGCCAAAACATGCCGAACC 60.733 57.895 0.00 0.00 0.00 3.62
76 77 1.732683 GCCAAAACATGCCGAACCG 60.733 57.895 0.00 0.00 0.00 4.44
77 78 1.732683 CCAAAACATGCCGAACCGC 60.733 57.895 0.00 0.00 0.00 5.68
78 79 2.080062 CAAAACATGCCGAACCGCG 61.080 57.895 0.00 0.00 40.47 6.46
79 80 3.889831 AAAACATGCCGAACCGCGC 62.890 57.895 0.00 0.00 39.11 6.86
86 87 2.660552 CCGAACCGCGCCGAATAT 60.661 61.111 13.76 0.00 39.11 1.28
87 88 2.544359 CGAACCGCGCCGAATATG 59.456 61.111 0.00 0.00 0.00 1.78
88 89 1.947146 CGAACCGCGCCGAATATGA 60.947 57.895 0.00 0.00 0.00 2.15
89 90 1.853319 GAACCGCGCCGAATATGAG 59.147 57.895 0.00 0.00 0.00 2.90
90 91 2.159272 GAACCGCGCCGAATATGAGC 62.159 60.000 0.00 0.00 0.00 4.26
91 92 3.414700 CCGCGCCGAATATGAGCC 61.415 66.667 0.00 0.00 0.00 4.70
92 93 3.767230 CGCGCCGAATATGAGCCG 61.767 66.667 0.00 0.00 0.00 5.52
93 94 2.355837 GCGCCGAATATGAGCCGA 60.356 61.111 0.00 0.00 0.00 5.54
94 95 1.738099 GCGCCGAATATGAGCCGAT 60.738 57.895 0.00 0.00 0.00 4.18
95 96 1.291877 GCGCCGAATATGAGCCGATT 61.292 55.000 0.00 0.00 0.00 3.34
96 97 0.716108 CGCCGAATATGAGCCGATTC 59.284 55.000 0.00 0.00 0.00 2.52
97 98 1.795768 GCCGAATATGAGCCGATTCA 58.204 50.000 0.00 0.00 32.58 2.57
98 99 1.461127 GCCGAATATGAGCCGATTCAC 59.539 52.381 0.00 0.00 32.58 3.18
99 100 1.721389 CCGAATATGAGCCGATTCACG 59.279 52.381 0.00 0.00 42.18 4.35
100 101 1.125021 CGAATATGAGCCGATTCACGC 59.875 52.381 0.00 0.00 41.07 5.34
101 102 2.135139 GAATATGAGCCGATTCACGCA 58.865 47.619 0.00 0.00 41.07 5.24
102 103 1.788258 ATATGAGCCGATTCACGCAG 58.212 50.000 0.00 0.00 41.07 5.18
103 104 0.744281 TATGAGCCGATTCACGCAGA 59.256 50.000 0.00 0.00 41.07 4.26
104 105 0.105593 ATGAGCCGATTCACGCAGAT 59.894 50.000 0.00 0.00 41.07 2.90
105 106 0.744281 TGAGCCGATTCACGCAGATA 59.256 50.000 0.00 0.00 41.07 1.98
106 107 1.341209 TGAGCCGATTCACGCAGATAT 59.659 47.619 0.00 0.00 41.07 1.63
107 108 1.989165 GAGCCGATTCACGCAGATATC 59.011 52.381 0.00 0.00 41.07 1.63
108 109 0.710567 GCCGATTCACGCAGATATCG 59.289 55.000 0.00 0.00 41.07 2.92
109 110 1.340658 CCGATTCACGCAGATATCGG 58.659 55.000 18.14 18.14 43.76 4.18
110 111 1.340658 CGATTCACGCAGATATCGGG 58.659 55.000 4.98 7.38 35.52 5.14
111 112 1.071605 GATTCACGCAGATATCGGGC 58.928 55.000 11.13 11.13 0.00 6.13
112 113 0.320771 ATTCACGCAGATATCGGGCC 60.321 55.000 14.28 0.00 0.00 5.80
113 114 2.693250 TTCACGCAGATATCGGGCCG 62.693 60.000 22.51 22.51 0.00 6.13
114 115 3.224324 ACGCAGATATCGGGCCGT 61.224 61.111 27.32 15.73 0.00 5.68
115 116 2.029073 CGCAGATATCGGGCCGTT 59.971 61.111 27.32 20.77 0.00 4.44
116 117 1.594293 CGCAGATATCGGGCCGTTT 60.594 57.895 27.32 17.08 0.00 3.60
117 118 1.157870 CGCAGATATCGGGCCGTTTT 61.158 55.000 27.32 13.11 0.00 2.43
118 119 1.021968 GCAGATATCGGGCCGTTTTT 58.978 50.000 27.32 11.89 0.00 1.94
119 120 1.268539 GCAGATATCGGGCCGTTTTTG 60.269 52.381 27.32 18.61 0.00 2.44
120 121 1.333619 CAGATATCGGGCCGTTTTTGG 59.666 52.381 27.32 9.31 0.00 3.28
121 122 1.210967 AGATATCGGGCCGTTTTTGGA 59.789 47.619 27.32 4.44 0.00 3.53
122 123 2.158667 AGATATCGGGCCGTTTTTGGAT 60.159 45.455 27.32 12.57 0.00 3.41
123 124 3.071892 AGATATCGGGCCGTTTTTGGATA 59.928 43.478 27.32 14.48 0.00 2.59
124 125 2.131776 ATCGGGCCGTTTTTGGATAA 57.868 45.000 27.32 1.79 0.00 1.75
125 126 1.906990 TCGGGCCGTTTTTGGATAAA 58.093 45.000 27.32 0.00 0.00 1.40
126 127 2.236766 TCGGGCCGTTTTTGGATAAAA 58.763 42.857 27.32 0.00 34.13 1.52
127 128 2.826725 TCGGGCCGTTTTTGGATAAAAT 59.173 40.909 27.32 0.00 35.82 1.82
128 129 3.258622 TCGGGCCGTTTTTGGATAAAATT 59.741 39.130 27.32 0.00 35.82 1.82
129 130 3.369451 CGGGCCGTTTTTGGATAAAATTG 59.631 43.478 19.97 0.00 35.82 2.32
130 131 3.687212 GGGCCGTTTTTGGATAAAATTGG 59.313 43.478 0.00 0.00 35.82 3.16
131 132 3.687212 GGCCGTTTTTGGATAAAATTGGG 59.313 43.478 0.00 0.00 35.82 4.12
132 133 3.126171 GCCGTTTTTGGATAAAATTGGGC 59.874 43.478 0.00 0.00 37.95 5.36
133 134 3.687212 CCGTTTTTGGATAAAATTGGGCC 59.313 43.478 0.00 0.00 35.82 5.80
134 135 3.369451 CGTTTTTGGATAAAATTGGGCCG 59.631 43.478 0.00 0.00 35.82 6.13
135 136 4.570930 GTTTTTGGATAAAATTGGGCCGA 58.429 39.130 0.00 0.00 35.82 5.54
136 137 4.891992 TTTTGGATAAAATTGGGCCGAA 57.108 36.364 1.41 1.41 31.13 4.30
137 138 5.428184 TTTTGGATAAAATTGGGCCGAAT 57.572 34.783 7.24 7.24 31.13 3.34
138 139 6.546428 TTTTGGATAAAATTGGGCCGAATA 57.454 33.333 13.93 0.00 31.13 1.75
139 140 6.546428 TTTGGATAAAATTGGGCCGAATAA 57.454 33.333 13.93 3.15 0.00 1.40
140 141 6.739331 TTGGATAAAATTGGGCCGAATAAT 57.261 33.333 13.93 7.87 0.00 1.28
141 142 6.095432 TGGATAAAATTGGGCCGAATAATG 57.905 37.500 13.93 0.00 0.00 1.90
142 143 5.011533 TGGATAAAATTGGGCCGAATAATGG 59.988 40.000 13.93 0.00 0.00 3.16
143 144 3.836365 AAAATTGGGCCGAATAATGGG 57.164 42.857 13.93 0.00 0.00 4.00
148 149 4.150994 GCCGAATAATGGGCCGAA 57.849 55.556 0.00 0.00 44.10 4.30
149 150 2.410466 GCCGAATAATGGGCCGAAA 58.590 52.632 0.00 0.00 44.10 3.46
150 151 0.958822 GCCGAATAATGGGCCGAAAT 59.041 50.000 0.00 0.00 44.10 2.17
151 152 1.068541 GCCGAATAATGGGCCGAAATC 60.069 52.381 0.00 0.00 44.10 2.17
152 153 1.196808 CCGAATAATGGGCCGAAATCG 59.803 52.381 0.00 5.32 39.44 3.34
162 163 2.824041 CGAAATCGGCACCTGGGG 60.824 66.667 0.00 0.00 35.37 4.96
163 164 3.140814 GAAATCGGCACCTGGGGC 61.141 66.667 13.91 13.91 0.00 5.80
194 195 4.410400 GCCCAACCGTCCCCAGAG 62.410 72.222 0.00 0.00 0.00 3.35
195 196 4.410400 CCCAACCGTCCCCAGAGC 62.410 72.222 0.00 0.00 0.00 4.09
196 197 4.410400 CCAACCGTCCCCAGAGCC 62.410 72.222 0.00 0.00 0.00 4.70
197 198 4.760047 CAACCGTCCCCAGAGCCG 62.760 72.222 0.00 0.00 0.00 5.52
201 202 2.439701 CGTCCCCAGAGCCGAGTA 60.440 66.667 0.00 0.00 0.00 2.59
202 203 1.828660 CGTCCCCAGAGCCGAGTAT 60.829 63.158 0.00 0.00 0.00 2.12
203 204 1.742768 GTCCCCAGAGCCGAGTATG 59.257 63.158 0.00 0.00 0.00 2.39
204 205 2.134287 TCCCCAGAGCCGAGTATGC 61.134 63.158 0.00 0.00 0.00 3.14
205 206 2.423446 CCCAGAGCCGAGTATGCC 59.577 66.667 0.00 0.00 0.00 4.40
206 207 2.028190 CCAGAGCCGAGTATGCCG 59.972 66.667 0.00 0.00 0.00 5.69
207 208 2.659897 CAGAGCCGAGTATGCCGC 60.660 66.667 0.00 0.00 0.00 6.53
208 209 3.917760 AGAGCCGAGTATGCCGCC 61.918 66.667 0.00 0.00 0.00 6.13
234 235 2.046700 CCCAGGCGGCGACTTTTA 60.047 61.111 15.41 0.00 0.00 1.52
235 236 1.451387 CCCAGGCGGCGACTTTTAT 60.451 57.895 15.41 0.00 0.00 1.40
236 237 1.714899 CCCAGGCGGCGACTTTTATG 61.715 60.000 15.41 0.98 0.00 1.90
237 238 1.062525 CAGGCGGCGACTTTTATGC 59.937 57.895 15.41 0.00 0.00 3.14
238 239 2.112815 AGGCGGCGACTTTTATGCC 61.113 57.895 10.88 0.00 45.39 4.40
239 240 2.112815 GGCGGCGACTTTTATGCCT 61.113 57.895 12.98 0.00 46.67 4.75
240 241 1.352056 GCGGCGACTTTTATGCCTC 59.648 57.895 12.98 0.00 46.67 4.70
241 242 2.014594 CGGCGACTTTTATGCCTCC 58.985 57.895 0.00 0.00 46.67 4.30
242 243 0.462047 CGGCGACTTTTATGCCTCCT 60.462 55.000 0.00 0.00 46.67 3.69
243 244 1.017387 GGCGACTTTTATGCCTCCTG 58.983 55.000 0.00 0.00 45.40 3.86
244 245 1.017387 GCGACTTTTATGCCTCCTGG 58.983 55.000 0.00 0.00 0.00 4.45
245 246 1.668419 CGACTTTTATGCCTCCTGGG 58.332 55.000 0.00 0.00 38.36 4.45
246 247 1.747206 CGACTTTTATGCCTCCTGGGG 60.747 57.143 0.00 0.00 35.12 4.96
247 248 0.631212 ACTTTTATGCCTCCTGGGGG 59.369 55.000 8.74 8.74 35.12 5.40
269 270 3.540211 CAACGGCTGGAGATGTTCT 57.460 52.632 0.00 0.00 0.00 3.01
270 271 1.813513 CAACGGCTGGAGATGTTCTT 58.186 50.000 0.00 0.00 0.00 2.52
271 272 2.972625 CAACGGCTGGAGATGTTCTTA 58.027 47.619 0.00 0.00 0.00 2.10
272 273 3.535561 CAACGGCTGGAGATGTTCTTAT 58.464 45.455 0.00 0.00 0.00 1.73
273 274 3.185246 ACGGCTGGAGATGTTCTTATG 57.815 47.619 0.00 0.00 0.00 1.90
274 275 2.766263 ACGGCTGGAGATGTTCTTATGA 59.234 45.455 0.00 0.00 0.00 2.15
275 276 3.389329 ACGGCTGGAGATGTTCTTATGAT 59.611 43.478 0.00 0.00 0.00 2.45
276 277 4.588951 ACGGCTGGAGATGTTCTTATGATA 59.411 41.667 0.00 0.00 0.00 2.15
277 278 5.167121 CGGCTGGAGATGTTCTTATGATAG 58.833 45.833 0.00 0.00 0.00 2.08
278 279 5.047731 CGGCTGGAGATGTTCTTATGATAGA 60.048 44.000 0.00 0.00 0.00 1.98
279 280 6.517362 CGGCTGGAGATGTTCTTATGATAGAA 60.517 42.308 0.00 0.00 0.00 2.10
280 281 6.873076 GGCTGGAGATGTTCTTATGATAGAAG 59.127 42.308 0.00 0.00 34.95 2.85
281 282 7.256119 GGCTGGAGATGTTCTTATGATAGAAGA 60.256 40.741 0.00 0.00 34.95 2.87
282 283 7.598493 GCTGGAGATGTTCTTATGATAGAAGAC 59.402 40.741 0.00 0.00 34.95 3.01
283 284 7.957002 TGGAGATGTTCTTATGATAGAAGACC 58.043 38.462 0.00 0.00 34.95 3.85
284 285 7.015682 TGGAGATGTTCTTATGATAGAAGACCC 59.984 40.741 0.00 0.00 34.95 4.46
285 286 7.234577 GGAGATGTTCTTATGATAGAAGACCCT 59.765 40.741 0.00 0.00 34.95 4.34
286 287 7.961351 AGATGTTCTTATGATAGAAGACCCTG 58.039 38.462 0.00 0.00 34.95 4.45
287 288 7.786943 AGATGTTCTTATGATAGAAGACCCTGA 59.213 37.037 0.00 0.00 34.95 3.86
288 289 7.353414 TGTTCTTATGATAGAAGACCCTGAG 57.647 40.000 0.00 0.00 34.95 3.35
289 290 6.183360 TGTTCTTATGATAGAAGACCCTGAGC 60.183 42.308 0.00 0.00 34.95 4.26
290 291 4.520874 TCTTATGATAGAAGACCCTGAGCG 59.479 45.833 0.00 0.00 0.00 5.03
291 292 2.437085 TGATAGAAGACCCTGAGCGA 57.563 50.000 0.00 0.00 0.00 4.93
292 293 2.302260 TGATAGAAGACCCTGAGCGAG 58.698 52.381 0.00 0.00 0.00 5.03
293 294 1.000717 GATAGAAGACCCTGAGCGAGC 60.001 57.143 0.00 0.00 0.00 5.03
294 295 1.377366 TAGAAGACCCTGAGCGAGCG 61.377 60.000 0.00 0.00 0.00 5.03
295 296 2.992114 AAGACCCTGAGCGAGCGT 60.992 61.111 0.00 0.00 0.00 5.07
296 297 2.493907 GAAGACCCTGAGCGAGCGTT 62.494 60.000 0.00 0.00 0.00 4.84
297 298 2.048127 GACCCTGAGCGAGCGTTT 60.048 61.111 0.00 0.00 0.00 3.60
298 299 1.668151 GACCCTGAGCGAGCGTTTT 60.668 57.895 0.00 0.00 0.00 2.43
299 300 1.227853 ACCCTGAGCGAGCGTTTTT 60.228 52.632 0.00 0.00 0.00 1.94
322 323 8.934507 TTTTGGAACTTTTAGTTGTAACATGG 57.065 30.769 0.00 0.00 38.80 3.66
323 324 7.648039 TTGGAACTTTTAGTTGTAACATGGT 57.352 32.000 0.00 0.00 38.80 3.55
324 325 7.266922 TGGAACTTTTAGTTGTAACATGGTC 57.733 36.000 0.00 0.00 38.80 4.02
325 326 7.057894 TGGAACTTTTAGTTGTAACATGGTCT 58.942 34.615 0.00 0.00 38.80 3.85
326 327 7.558444 TGGAACTTTTAGTTGTAACATGGTCTT 59.442 33.333 0.00 0.00 38.80 3.01
327 328 8.410912 GGAACTTTTAGTTGTAACATGGTCTTT 58.589 33.333 0.00 0.00 38.80 2.52
328 329 9.797556 GAACTTTTAGTTGTAACATGGTCTTTT 57.202 29.630 0.00 0.00 38.80 2.27
331 332 9.893305 CTTTTAGTTGTAACATGGTCTTTTAGG 57.107 33.333 0.00 0.00 0.00 2.69
332 333 5.959618 AGTTGTAACATGGTCTTTTAGGC 57.040 39.130 0.00 0.00 0.00 3.93
333 334 4.765339 AGTTGTAACATGGTCTTTTAGGCC 59.235 41.667 0.00 0.00 41.40 5.19
344 345 7.208064 TGGTCTTTTAGGCCATATTTAGTCT 57.792 36.000 5.01 0.00 46.76 3.24
345 346 7.280356 TGGTCTTTTAGGCCATATTTAGTCTC 58.720 38.462 5.01 0.00 46.76 3.36
346 347 7.092623 TGGTCTTTTAGGCCATATTTAGTCTCA 60.093 37.037 5.01 0.00 46.76 3.27
347 348 7.442666 GGTCTTTTAGGCCATATTTAGTCTCAG 59.557 40.741 5.01 0.00 40.51 3.35
348 349 7.442666 GTCTTTTAGGCCATATTTAGTCTCAGG 59.557 40.741 5.01 0.00 0.00 3.86
349 350 7.347222 TCTTTTAGGCCATATTTAGTCTCAGGA 59.653 37.037 5.01 0.00 0.00 3.86
350 351 7.446106 TTTAGGCCATATTTAGTCTCAGGAA 57.554 36.000 5.01 0.00 0.00 3.36
351 352 5.297569 AGGCCATATTTAGTCTCAGGAAC 57.702 43.478 5.01 0.00 0.00 3.62
352 353 4.103311 AGGCCATATTTAGTCTCAGGAACC 59.897 45.833 5.01 0.00 0.00 3.62
353 354 4.141482 GGCCATATTTAGTCTCAGGAACCA 60.141 45.833 0.00 0.00 0.00 3.67
354 355 5.437060 GCCATATTTAGTCTCAGGAACCAA 58.563 41.667 0.00 0.00 0.00 3.67
355 356 5.885912 GCCATATTTAGTCTCAGGAACCAAA 59.114 40.000 0.00 0.00 0.00 3.28
356 357 6.183360 GCCATATTTAGTCTCAGGAACCAAAC 60.183 42.308 0.00 0.00 0.00 2.93
357 358 6.884295 CCATATTTAGTCTCAGGAACCAAACA 59.116 38.462 0.00 0.00 0.00 2.83
358 359 7.557719 CCATATTTAGTCTCAGGAACCAAACAT 59.442 37.037 0.00 0.00 0.00 2.71
359 360 9.613428 CATATTTAGTCTCAGGAACCAAACATA 57.387 33.333 0.00 0.00 0.00 2.29
362 363 9.838339 ATTTAGTCTCAGGAACCAAACATATAG 57.162 33.333 0.00 0.00 0.00 1.31
363 364 6.240549 AGTCTCAGGAACCAAACATATAGG 57.759 41.667 0.00 0.00 0.00 2.57
364 365 5.964477 AGTCTCAGGAACCAAACATATAGGA 59.036 40.000 0.00 0.00 0.00 2.94
365 366 6.443849 AGTCTCAGGAACCAAACATATAGGAA 59.556 38.462 0.00 0.00 0.00 3.36
366 367 7.127955 AGTCTCAGGAACCAAACATATAGGAAT 59.872 37.037 0.00 0.00 0.00 3.01
367 368 7.775561 GTCTCAGGAACCAAACATATAGGAATT 59.224 37.037 0.00 0.00 0.00 2.17
368 369 8.336235 TCTCAGGAACCAAACATATAGGAATTT 58.664 33.333 0.00 0.00 0.00 1.82
369 370 8.893563 TCAGGAACCAAACATATAGGAATTTT 57.106 30.769 0.00 0.00 0.00 1.82
370 371 9.320295 TCAGGAACCAAACATATAGGAATTTTT 57.680 29.630 0.00 0.00 0.00 1.94
428 429 8.487313 AAAATTTTAGGACTTGTGAACCAAAC 57.513 30.769 0.37 0.00 31.20 2.93
429 430 6.783708 ATTTTAGGACTTGTGAACCAAACA 57.216 33.333 0.00 0.00 31.20 2.83
430 431 5.828299 TTTAGGACTTGTGAACCAAACAG 57.172 39.130 0.00 0.00 31.20 3.16
431 432 2.654863 AGGACTTGTGAACCAAACAGG 58.345 47.619 0.00 0.00 45.67 4.00
432 433 1.067060 GGACTTGTGAACCAAACAGGC 59.933 52.381 0.00 0.00 43.14 4.85
433 434 1.067060 GACTTGTGAACCAAACAGGCC 59.933 52.381 0.00 0.00 43.14 5.19
434 435 1.341976 ACTTGTGAACCAAACAGGCCT 60.342 47.619 0.00 0.00 43.14 5.19
435 436 2.092103 ACTTGTGAACCAAACAGGCCTA 60.092 45.455 3.98 0.00 43.14 3.93
436 437 2.738587 TGTGAACCAAACAGGCCTAA 57.261 45.000 3.98 0.00 43.14 2.69
437 438 2.582052 TGTGAACCAAACAGGCCTAAG 58.418 47.619 3.98 0.00 43.14 2.18
438 439 1.269723 GTGAACCAAACAGGCCTAAGC 59.730 52.381 3.98 0.00 43.14 3.09
489 490 8.258708 ACTTATTATATAAGGATCGGGAGTTGC 58.741 37.037 10.29 0.00 0.00 4.17
490 491 3.983044 ATATAAGGATCGGGAGTTGCC 57.017 47.619 0.00 0.00 0.00 4.52
491 492 1.807814 ATAAGGATCGGGAGTTGCCT 58.192 50.000 0.00 0.00 36.66 4.75
492 493 1.580059 TAAGGATCGGGAGTTGCCTT 58.420 50.000 0.00 0.00 41.51 4.35
493 494 0.698818 AAGGATCGGGAGTTGCCTTT 59.301 50.000 0.00 0.00 35.53 3.11
494 495 0.698818 AGGATCGGGAGTTGCCTTTT 59.301 50.000 0.00 0.00 36.66 2.27
495 496 1.075536 AGGATCGGGAGTTGCCTTTTT 59.924 47.619 0.00 0.00 36.66 1.94
496 497 1.472878 GGATCGGGAGTTGCCTTTTTC 59.527 52.381 0.00 0.00 36.66 2.29
497 498 2.437413 GATCGGGAGTTGCCTTTTTCT 58.563 47.619 0.00 0.00 36.66 2.52
498 499 1.604604 TCGGGAGTTGCCTTTTTCTG 58.395 50.000 0.00 0.00 36.66 3.02
499 500 0.598065 CGGGAGTTGCCTTTTTCTGG 59.402 55.000 0.00 0.00 36.66 3.86
500 501 0.969149 GGGAGTTGCCTTTTTCTGGG 59.031 55.000 0.00 0.00 36.66 4.45
501 502 1.480498 GGGAGTTGCCTTTTTCTGGGA 60.480 52.381 0.00 0.00 36.66 4.37
502 503 1.889170 GGAGTTGCCTTTTTCTGGGAG 59.111 52.381 0.00 0.00 0.00 4.30
503 504 2.587522 GAGTTGCCTTTTTCTGGGAGT 58.412 47.619 0.00 0.00 0.00 3.85
504 505 2.554462 GAGTTGCCTTTTTCTGGGAGTC 59.446 50.000 0.00 0.00 0.00 3.36
505 506 2.175715 AGTTGCCTTTTTCTGGGAGTCT 59.824 45.455 0.00 0.00 0.00 3.24
506 507 2.554462 GTTGCCTTTTTCTGGGAGTCTC 59.446 50.000 0.00 0.00 0.00 3.36
507 508 1.073923 TGCCTTTTTCTGGGAGTCTCC 59.926 52.381 10.78 10.78 35.23 3.71
508 509 1.946283 GCCTTTTTCTGGGAGTCTCCG 60.946 57.143 12.91 0.00 37.43 4.63
509 510 1.443802 CTTTTTCTGGGAGTCTCCGC 58.556 55.000 12.91 6.61 37.43 5.54
510 511 0.762418 TTTTTCTGGGAGTCTCCGCA 59.238 50.000 12.91 10.69 37.43 5.69
511 512 0.762418 TTTTCTGGGAGTCTCCGCAA 59.238 50.000 12.91 2.52 37.43 4.85
512 513 0.762418 TTTCTGGGAGTCTCCGCAAA 59.238 50.000 12.91 8.33 37.43 3.68
513 514 0.762418 TTCTGGGAGTCTCCGCAAAA 59.238 50.000 12.91 2.79 37.43 2.44
514 515 0.762418 TCTGGGAGTCTCCGCAAAAA 59.238 50.000 12.91 0.00 37.43 1.94
542 543 9.769093 AAATTACGAGAACCTAAATCGATTTTG 57.231 29.630 27.10 23.68 39.66 2.44
543 544 5.217895 ACGAGAACCTAAATCGATTTTGC 57.782 39.130 27.10 9.60 39.66 3.68
544 545 4.693566 ACGAGAACCTAAATCGATTTTGCA 59.306 37.500 27.10 9.92 39.66 4.08
545 546 5.163854 ACGAGAACCTAAATCGATTTTGCAG 60.164 40.000 27.10 18.15 39.66 4.41
546 547 5.163854 CGAGAACCTAAATCGATTTTGCAGT 60.164 40.000 27.10 16.14 38.72 4.40
547 548 6.035650 CGAGAACCTAAATCGATTTTGCAGTA 59.964 38.462 27.10 8.49 38.72 2.74
548 549 7.073342 AGAACCTAAATCGATTTTGCAGTAC 57.927 36.000 27.10 13.96 0.00 2.73
549 550 5.464965 ACCTAAATCGATTTTGCAGTACG 57.535 39.130 27.10 13.70 0.00 3.67
550 551 4.933400 ACCTAAATCGATTTTGCAGTACGT 59.067 37.500 27.10 14.26 0.00 3.57
551 552 6.101332 ACCTAAATCGATTTTGCAGTACGTA 58.899 36.000 27.10 5.68 0.00 3.57
552 553 6.035327 ACCTAAATCGATTTTGCAGTACGTAC 59.965 38.462 27.10 18.10 0.00 3.67
553 554 4.852609 AATCGATTTTGCAGTACGTACC 57.147 40.909 21.80 8.47 0.00 3.34
554 555 2.252747 TCGATTTTGCAGTACGTACCG 58.747 47.619 21.80 13.37 0.00 4.02
555 556 1.322338 CGATTTTGCAGTACGTACCGG 59.678 52.381 21.80 15.30 0.00 5.28
556 557 2.609350 GATTTTGCAGTACGTACCGGA 58.391 47.619 21.80 10.73 0.00 5.14
557 558 2.747396 TTTTGCAGTACGTACCGGAT 57.253 45.000 21.80 0.32 0.00 4.18
558 559 2.747396 TTTGCAGTACGTACCGGATT 57.253 45.000 21.80 0.00 0.00 3.01
559 560 2.747396 TTGCAGTACGTACCGGATTT 57.253 45.000 21.80 0.00 0.00 2.17
560 561 2.747396 TGCAGTACGTACCGGATTTT 57.253 45.000 21.80 0.00 0.00 1.82
561 562 3.865011 TGCAGTACGTACCGGATTTTA 57.135 42.857 21.80 0.00 0.00 1.52
562 563 3.510719 TGCAGTACGTACCGGATTTTAC 58.489 45.455 21.80 4.11 0.00 2.01
563 564 3.193267 TGCAGTACGTACCGGATTTTACT 59.807 43.478 21.80 6.60 0.00 2.24
564 565 3.549070 GCAGTACGTACCGGATTTTACTG 59.451 47.826 21.80 22.60 39.51 2.74
565 566 4.107622 CAGTACGTACCGGATTTTACTGG 58.892 47.826 21.80 0.00 41.66 4.00
566 567 4.016444 AGTACGTACCGGATTTTACTGGA 58.984 43.478 21.80 0.00 39.41 3.86
567 568 4.646492 AGTACGTACCGGATTTTACTGGAT 59.354 41.667 21.80 0.00 39.41 3.41
568 569 4.476628 ACGTACCGGATTTTACTGGATT 57.523 40.909 9.46 0.00 39.41 3.01
569 570 4.186159 ACGTACCGGATTTTACTGGATTG 58.814 43.478 9.46 0.00 39.41 2.67
570 571 3.001939 CGTACCGGATTTTACTGGATTGC 59.998 47.826 9.46 0.00 39.41 3.56
571 572 2.375146 ACCGGATTTTACTGGATTGCC 58.625 47.619 9.46 0.00 39.41 4.52
572 573 1.333619 CCGGATTTTACTGGATTGCCG 59.666 52.381 0.00 0.00 38.49 5.69
573 574 1.333619 CGGATTTTACTGGATTGCCGG 59.666 52.381 0.00 0.00 46.62 6.13
574 575 2.650322 GGATTTTACTGGATTGCCGGA 58.350 47.619 5.05 0.00 43.76 5.14
575 576 2.618709 GGATTTTACTGGATTGCCGGAG 59.381 50.000 5.05 0.00 43.76 4.63
576 577 3.541632 GATTTTACTGGATTGCCGGAGA 58.458 45.455 5.05 0.00 43.76 3.71
577 578 3.644966 TTTTACTGGATTGCCGGAGAT 57.355 42.857 5.05 0.00 43.76 2.75
578 579 2.620251 TTACTGGATTGCCGGAGATG 57.380 50.000 5.05 0.00 43.76 2.90
579 580 0.106708 TACTGGATTGCCGGAGATGC 59.893 55.000 5.05 3.49 43.76 3.91
580 581 1.147824 CTGGATTGCCGGAGATGCT 59.852 57.895 5.05 0.00 43.76 3.79
581 582 0.883814 CTGGATTGCCGGAGATGCTC 60.884 60.000 5.05 0.00 43.76 4.26
582 583 1.599240 GGATTGCCGGAGATGCTCC 60.599 63.158 5.05 3.36 46.44 4.70
594 595 5.066968 GGAGATGCTCCTACTATAGTTGC 57.933 47.826 11.40 10.99 46.41 4.17
595 596 4.524714 GGAGATGCTCCTACTATAGTTGCA 59.475 45.833 11.40 15.75 46.41 4.08
596 597 5.011125 GGAGATGCTCCTACTATAGTTGCAA 59.989 44.000 11.40 0.00 46.41 4.08
597 598 6.463049 GGAGATGCTCCTACTATAGTTGCAAA 60.463 42.308 11.40 0.00 46.41 3.68
598 599 6.889198 AGATGCTCCTACTATAGTTGCAAAA 58.111 36.000 11.40 0.00 36.33 2.44
599 600 7.338710 AGATGCTCCTACTATAGTTGCAAAAA 58.661 34.615 11.40 0.00 36.33 1.94
622 623 7.803279 AAAAAGTACTAGTGAAAAGGGTCAG 57.197 36.000 5.39 0.00 0.00 3.51
623 624 6.742559 AAAGTACTAGTGAAAAGGGTCAGA 57.257 37.500 5.39 0.00 0.00 3.27
624 625 6.936968 AAGTACTAGTGAAAAGGGTCAGAT 57.063 37.500 5.39 0.00 0.00 2.90
625 626 6.287589 AGTACTAGTGAAAAGGGTCAGATG 57.712 41.667 5.39 0.00 0.00 2.90
626 627 5.780793 AGTACTAGTGAAAAGGGTCAGATGT 59.219 40.000 5.39 0.00 0.00 3.06
627 628 4.899502 ACTAGTGAAAAGGGTCAGATGTG 58.100 43.478 0.00 0.00 0.00 3.21
628 629 4.593206 ACTAGTGAAAAGGGTCAGATGTGA 59.407 41.667 0.00 0.00 0.00 3.58
629 630 4.437682 AGTGAAAAGGGTCAGATGTGAA 57.562 40.909 0.00 0.00 33.27 3.18
630 631 4.137543 AGTGAAAAGGGTCAGATGTGAAC 58.862 43.478 0.00 0.00 40.02 3.18
631 632 4.137543 GTGAAAAGGGTCAGATGTGAACT 58.862 43.478 7.95 0.20 40.64 3.01
632 633 4.023707 GTGAAAAGGGTCAGATGTGAACTG 60.024 45.833 7.95 0.00 40.64 3.16
633 634 4.141505 TGAAAAGGGTCAGATGTGAACTGA 60.142 41.667 7.95 0.00 40.64 3.41
634 635 3.692257 AAGGGTCAGATGTGAACTGAG 57.308 47.619 7.95 0.00 43.58 3.35
635 636 1.905215 AGGGTCAGATGTGAACTGAGG 59.095 52.381 7.95 0.00 43.58 3.86
636 637 1.902508 GGGTCAGATGTGAACTGAGGA 59.097 52.381 7.95 0.00 43.58 3.71
637 638 2.093764 GGGTCAGATGTGAACTGAGGAG 60.094 54.545 7.95 0.00 43.58 3.69
638 639 2.828520 GGTCAGATGTGAACTGAGGAGA 59.171 50.000 0.00 0.00 43.58 3.71
639 640 3.367910 GGTCAGATGTGAACTGAGGAGAC 60.368 52.174 0.00 0.00 43.58 3.36
640 641 2.828520 TCAGATGTGAACTGAGGAGACC 59.171 50.000 0.00 0.00 39.10 3.85
641 642 2.564504 CAGATGTGAACTGAGGAGACCA 59.435 50.000 0.00 0.00 37.54 4.02
642 643 2.564947 AGATGTGAACTGAGGAGACCAC 59.435 50.000 0.00 0.00 0.00 4.16
643 644 2.088104 TGTGAACTGAGGAGACCACT 57.912 50.000 0.00 0.00 0.00 4.00
644 645 1.964223 TGTGAACTGAGGAGACCACTC 59.036 52.381 0.00 0.00 41.94 3.51
645 646 1.964223 GTGAACTGAGGAGACCACTCA 59.036 52.381 0.00 0.00 44.22 3.41
651 652 3.244887 TGAGGAGACCACTCAGAAAGA 57.755 47.619 0.00 0.00 44.22 2.52
652 653 3.576861 TGAGGAGACCACTCAGAAAGAA 58.423 45.455 0.00 0.00 44.22 2.52
653 654 3.967326 TGAGGAGACCACTCAGAAAGAAA 59.033 43.478 0.00 0.00 44.22 2.52
654 655 4.408921 TGAGGAGACCACTCAGAAAGAAAA 59.591 41.667 0.00 0.00 44.22 2.29
655 656 5.104527 TGAGGAGACCACTCAGAAAGAAAAA 60.105 40.000 0.00 0.00 44.22 1.94
689 690 4.789123 CCAAACCCTACCCCCGCG 62.789 72.222 0.00 0.00 0.00 6.46
711 712 1.153147 GCCCTCGATTCCCAACCTC 60.153 63.158 0.00 0.00 0.00 3.85
713 714 0.912486 CCCTCGATTCCCAACCTCTT 59.088 55.000 0.00 0.00 0.00 2.85
714 715 1.134371 CCCTCGATTCCCAACCTCTTC 60.134 57.143 0.00 0.00 0.00 2.87
764 765 3.394836 GCCGGAGTGCCCTCTTCT 61.395 66.667 5.05 0.00 37.86 2.85
784 785 1.357690 CGACGCCGGTAAGCAGATA 59.642 57.895 1.90 0.00 0.00 1.98
785 786 0.039437 CGACGCCGGTAAGCAGATAT 60.039 55.000 1.90 0.00 0.00 1.63
794 795 0.472044 TAAGCAGATATGCCGCCCAA 59.528 50.000 9.09 0.00 34.90 4.12
875 899 5.373222 TCCCTCAAATCGTTCTTTTCTTCA 58.627 37.500 0.00 0.00 0.00 3.02
879 903 7.094805 CCCTCAAATCGTTCTTTTCTTCATGTA 60.095 37.037 0.00 0.00 0.00 2.29
881 905 7.581476 TCAAATCGTTCTTTTCTTCATGTACC 58.419 34.615 0.00 0.00 0.00 3.34
882 906 7.227711 TCAAATCGTTCTTTTCTTCATGTACCA 59.772 33.333 0.00 0.00 0.00 3.25
884 908 7.687941 ATCGTTCTTTTCTTCATGTACCAAT 57.312 32.000 0.00 0.00 0.00 3.16
885 909 8.786826 ATCGTTCTTTTCTTCATGTACCAATA 57.213 30.769 0.00 0.00 0.00 1.90
886 910 8.251750 TCGTTCTTTTCTTCATGTACCAATAG 57.748 34.615 0.00 0.00 0.00 1.73
887 911 6.961554 CGTTCTTTTCTTCATGTACCAATAGC 59.038 38.462 0.00 0.00 0.00 2.97
888 912 7.148407 CGTTCTTTTCTTCATGTACCAATAGCT 60.148 37.037 0.00 0.00 0.00 3.32
889 913 7.849804 TCTTTTCTTCATGTACCAATAGCTC 57.150 36.000 0.00 0.00 0.00 4.09
891 915 3.717707 TCTTCATGTACCAATAGCTCGC 58.282 45.455 0.00 0.00 0.00 5.03
892 916 2.526304 TCATGTACCAATAGCTCGCC 57.474 50.000 0.00 0.00 0.00 5.54
894 918 2.368548 TCATGTACCAATAGCTCGCCAT 59.631 45.455 0.00 0.00 0.00 4.40
895 919 2.526304 TGTACCAATAGCTCGCCATC 57.474 50.000 0.00 0.00 0.00 3.51
896 920 1.269569 TGTACCAATAGCTCGCCATCG 60.270 52.381 0.00 0.00 0.00 3.84
897 921 0.319555 TACCAATAGCTCGCCATCGC 60.320 55.000 0.00 0.00 35.26 4.58
954 978 1.373497 CCATAGCTCGCCATCGTCC 60.373 63.158 0.00 0.00 36.96 4.79
955 979 1.373497 CATAGCTCGCCATCGTCCC 60.373 63.158 0.00 0.00 36.96 4.46
956 980 2.574955 ATAGCTCGCCATCGTCCCC 61.575 63.158 0.00 0.00 36.96 4.81
957 981 3.733507 TAGCTCGCCATCGTCCCCT 62.734 63.158 0.00 0.00 36.96 4.79
958 982 4.899239 GCTCGCCATCGTCCCCTG 62.899 72.222 0.00 0.00 36.96 4.45
959 983 3.147595 CTCGCCATCGTCCCCTGA 61.148 66.667 0.00 0.00 36.96 3.86
960 984 3.432051 CTCGCCATCGTCCCCTGAC 62.432 68.421 0.00 0.00 38.18 3.51
961 985 3.461773 CGCCATCGTCCCCTGACT 61.462 66.667 0.00 0.00 39.47 3.41
962 986 2.990479 GCCATCGTCCCCTGACTT 59.010 61.111 0.00 0.00 39.47 3.01
963 987 1.153349 GCCATCGTCCCCTGACTTC 60.153 63.158 0.00 0.00 39.47 3.01
964 988 1.522569 CCATCGTCCCCTGACTTCC 59.477 63.158 0.00 0.00 39.47 3.46
965 989 0.978146 CCATCGTCCCCTGACTTCCT 60.978 60.000 0.00 0.00 39.47 3.36
966 990 0.176680 CATCGTCCCCTGACTTCCTG 59.823 60.000 0.00 0.00 39.47 3.86
967 991 0.041238 ATCGTCCCCTGACTTCCTGA 59.959 55.000 0.00 0.00 39.47 3.86
968 992 0.898789 TCGTCCCCTGACTTCCTGAC 60.899 60.000 0.00 0.00 39.47 3.51
969 993 0.900647 CGTCCCCTGACTTCCTGACT 60.901 60.000 0.00 0.00 39.47 3.41
970 994 0.610687 GTCCCCTGACTTCCTGACTG 59.389 60.000 0.00 0.00 38.53 3.51
971 995 1.194781 TCCCCTGACTTCCTGACTGC 61.195 60.000 0.00 0.00 0.00 4.40
972 996 1.298014 CCCTGACTTCCTGACTGCC 59.702 63.158 0.00 0.00 0.00 4.85
973 997 1.298014 CCTGACTTCCTGACTGCCC 59.702 63.158 0.00 0.00 0.00 5.36
974 998 1.298014 CTGACTTCCTGACTGCCCC 59.702 63.158 0.00 0.00 0.00 5.80
975 999 2.190488 CTGACTTCCTGACTGCCCCC 62.190 65.000 0.00 0.00 0.00 5.40
1020 1044 2.580966 GGTAACCCTCTCGCTGTAAG 57.419 55.000 0.00 0.00 0.00 2.34
1021 1045 1.823610 GGTAACCCTCTCGCTGTAAGT 59.176 52.381 0.00 0.00 35.30 2.24
1023 1047 3.306571 GGTAACCCTCTCGCTGTAAGTTT 60.307 47.826 0.00 0.00 35.30 2.66
1025 1049 2.249139 ACCCTCTCGCTGTAAGTTTCT 58.751 47.619 0.00 0.00 35.30 2.52
1026 1050 2.633481 ACCCTCTCGCTGTAAGTTTCTT 59.367 45.455 0.00 0.00 35.30 2.52
1027 1051 3.071167 ACCCTCTCGCTGTAAGTTTCTTT 59.929 43.478 0.00 0.00 35.30 2.52
1028 1052 4.065789 CCCTCTCGCTGTAAGTTTCTTTT 58.934 43.478 0.00 0.00 35.30 2.27
1030 1054 4.143305 CCTCTCGCTGTAAGTTTCTTTTCG 60.143 45.833 0.00 0.00 35.30 3.46
1031 1055 4.365723 TCTCGCTGTAAGTTTCTTTTCGT 58.634 39.130 0.00 0.00 35.30 3.85
1032 1056 4.807304 TCTCGCTGTAAGTTTCTTTTCGTT 59.193 37.500 0.00 0.00 35.30 3.85
1102 1169 3.578286 TCACCATGCCAGGCACCA 61.578 61.111 19.10 0.00 43.04 4.17
1295 1370 1.530293 GATTCTCAGCCACATCATCGC 59.470 52.381 0.00 0.00 0.00 4.58
1296 1377 0.462581 TTCTCAGCCACATCATCGCC 60.463 55.000 0.00 0.00 0.00 5.54
1308 1389 4.408821 ATCGCCCCGCAGAAAGCA 62.409 61.111 0.00 0.00 46.13 3.91
1328 1409 1.703411 TGCCTCCTGTTTTCCTTTGG 58.297 50.000 0.00 0.00 0.00 3.28
1334 1415 0.969149 CTGTTTTCCTTTGGGGCCTC 59.031 55.000 0.84 0.00 34.39 4.70
1375 1462 0.686441 CCCTGTCATCCGGACCTACA 60.686 60.000 6.12 10.84 46.38 2.74
1377 1464 1.137086 CCTGTCATCCGGACCTACAAG 59.863 57.143 6.12 1.25 46.38 3.16
1379 1466 2.233922 CTGTCATCCGGACCTACAAGTT 59.766 50.000 6.12 0.00 46.38 2.66
1387 1474 3.207778 CGGACCTACAAGTTTGGTGAAA 58.792 45.455 3.00 0.00 33.74 2.69
1391 1478 4.457466 ACCTACAAGTTTGGTGAAATCGT 58.543 39.130 0.00 0.00 32.16 3.73
1428 1515 1.070445 CCTCATCGTCTCCCATGGC 59.930 63.158 6.09 0.00 0.00 4.40
1429 1516 1.070445 CTCATCGTCTCCCATGGCC 59.930 63.158 6.09 0.00 0.00 5.36
1430 1517 1.383109 TCATCGTCTCCCATGGCCT 60.383 57.895 6.09 0.00 0.00 5.19
1431 1518 0.982852 TCATCGTCTCCCATGGCCTT 60.983 55.000 6.09 0.00 0.00 4.35
1433 1520 1.987807 ATCGTCTCCCATGGCCTTGG 61.988 60.000 27.23 27.23 36.46 3.61
1586 1680 1.936547 GCTTTGGCAATCTAGTCCGAG 59.063 52.381 0.00 0.00 38.54 4.63
1611 1708 4.142924 TGCTACAACGCATATGACACAAAG 60.143 41.667 6.97 0.00 34.44 2.77
1614 1711 6.238103 GCTACAACGCATATGACACAAAGTAT 60.238 38.462 6.97 0.00 0.00 2.12
1616 1713 7.786178 ACAACGCATATGACACAAAGTATAT 57.214 32.000 6.97 0.00 0.00 0.86
1617 1714 7.630026 ACAACGCATATGACACAAAGTATATG 58.370 34.615 6.97 0.00 36.86 1.78
1946 2043 0.108804 GCTTTGTGCAGCATCAGCAT 60.109 50.000 15.29 0.00 44.79 3.79
2009 2106 0.390472 GCCGAGACCTGGTCTTTCAG 60.390 60.000 28.90 19.33 43.53 3.02
2020 2117 3.349927 TGGTCTTTCAGGCATCAGATTG 58.650 45.455 0.00 0.00 0.00 2.67
2054 2151 0.379669 GATCCATCAGCGCTTGTTGG 59.620 55.000 19.32 19.32 44.66 3.77
2060 2157 0.037326 TCAGCGCTTGTTGGTCTAGG 60.037 55.000 7.50 0.00 0.00 3.02
2078 2181 2.127708 AGGGGTGACAATGATCCCTAC 58.872 52.381 0.00 0.00 45.44 3.18
2123 2232 1.736681 GCTGCTGATCCAGTTCACTTC 59.263 52.381 0.00 0.00 35.28 3.01
2124 2233 2.354259 CTGCTGATCCAGTTCACTTCC 58.646 52.381 0.00 0.00 33.43 3.46
2125 2234 1.699083 TGCTGATCCAGTTCACTTCCA 59.301 47.619 0.00 0.00 33.43 3.53
2126 2235 2.079925 GCTGATCCAGTTCACTTCCAC 58.920 52.381 0.00 0.00 33.43 4.02
2127 2236 2.289945 GCTGATCCAGTTCACTTCCACT 60.290 50.000 0.00 0.00 33.43 4.00
2128 2237 3.594134 CTGATCCAGTTCACTTCCACTC 58.406 50.000 0.00 0.00 0.00 3.51
2189 2298 8.669243 GTTTTTAGGATATGTGAAGAGTGAAGG 58.331 37.037 0.00 0.00 0.00 3.46
2388 2503 6.516693 CGCCAATGGAGTATCTATTCTACACA 60.517 42.308 2.05 0.00 43.21 3.72
2551 2703 3.136992 TCCCCTCGTTTACTTCCAGTTTT 59.863 43.478 0.00 0.00 0.00 2.43
2552 2704 3.252458 CCCCTCGTTTACTTCCAGTTTTG 59.748 47.826 0.00 0.00 0.00 2.44
2553 2705 3.304458 CCCTCGTTTACTTCCAGTTTTGC 60.304 47.826 0.00 0.00 0.00 3.68
2588 2740 4.325204 CGATGAAAGACATGGTTGCAATTG 59.675 41.667 0.59 0.00 39.56 2.32
2635 2791 8.817092 AGATATTATCTAGAAGGGCACTACTC 57.183 38.462 4.32 0.00 38.00 2.59
2636 2792 7.837187 AGATATTATCTAGAAGGGCACTACTCC 59.163 40.741 4.32 0.00 38.00 3.85
2638 2794 3.019799 TCTAGAAGGGCACTACTCCAG 57.980 52.381 0.00 0.00 0.00 3.86
2639 2795 2.581246 TCTAGAAGGGCACTACTCCAGA 59.419 50.000 0.00 0.00 0.00 3.86
2641 2797 2.839228 AGAAGGGCACTACTCCAGAAT 58.161 47.619 0.00 0.00 0.00 2.40
2666 2828 2.643551 GCTAGCCATCCTGCTTTGTTA 58.356 47.619 2.29 0.00 42.75 2.41
2678 2840 7.106439 TCCTGCTTTGTTATTGAGAAAACAA 57.894 32.000 0.00 0.00 42.27 2.83
2719 2881 5.489792 TCCTGCTGTCTTTCAGTCTTATT 57.510 39.130 0.00 0.00 45.23 1.40
2720 2882 5.482908 TCCTGCTGTCTTTCAGTCTTATTC 58.517 41.667 0.00 0.00 45.23 1.75
2721 2883 5.012046 TCCTGCTGTCTTTCAGTCTTATTCA 59.988 40.000 0.00 0.00 45.23 2.57
2722 2884 5.702670 CCTGCTGTCTTTCAGTCTTATTCAA 59.297 40.000 0.00 0.00 45.23 2.69
2723 2885 6.128336 CCTGCTGTCTTTCAGTCTTATTCAAG 60.128 42.308 0.00 0.00 45.23 3.02
2724 2886 6.291377 TGCTGTCTTTCAGTCTTATTCAAGT 58.709 36.000 0.00 0.00 45.23 3.16
2725 2887 6.767902 TGCTGTCTTTCAGTCTTATTCAAGTT 59.232 34.615 0.00 0.00 45.23 2.66
2726 2888 7.074502 GCTGTCTTTCAGTCTTATTCAAGTTG 58.925 38.462 0.00 0.00 45.23 3.16
2753 2923 7.815840 TGAGTGAATTATTTTGGTTGAGTCA 57.184 32.000 0.00 0.00 0.00 3.41
2757 2927 8.641541 AGTGAATTATTTTGGTTGAGTCATTGT 58.358 29.630 0.00 0.00 0.00 2.71
2908 3081 8.158789 TGCATACCTTAGTTTAGTTTGGTACTT 58.841 33.333 0.00 0.00 38.33 2.24
2912 3085 5.106830 CCTTAGTTTAGTTTGGTACTTGGCG 60.107 44.000 0.00 0.00 38.33 5.69
3117 3484 0.391263 GGGTAGAAGTGAGTTGGCGG 60.391 60.000 0.00 0.00 0.00 6.13
3128 3495 1.398390 GAGTTGGCGGTGTGATCATTC 59.602 52.381 0.00 0.00 0.00 2.67
3129 3496 1.164411 GTTGGCGGTGTGATCATTCA 58.836 50.000 0.00 0.00 0.00 2.57
3215 3582 5.534654 ACATGGTCATAATTTGATTACCCGG 59.465 40.000 0.00 0.00 36.54 5.73
3261 3628 4.263462 TGCATAGGTCACATGGAAAAGTCT 60.263 41.667 0.00 0.00 0.00 3.24
3486 3855 9.793252 CCTCAGATTATTTCAATGGTTAACTTG 57.207 33.333 5.42 3.48 0.00 3.16
3509 3878 7.448748 TGATTGCCTTTCATCATCTGATATG 57.551 36.000 0.00 0.00 32.72 1.78
3523 3892 6.558775 TCATCTGATATGCCCTAGGTTACTTT 59.441 38.462 8.29 0.00 0.00 2.66
3525 3894 7.924358 TCTGATATGCCCTAGGTTACTTTTA 57.076 36.000 8.29 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.719465 CACATAGTTCGGCGTGTTCC 59.281 55.000 6.85 0.00 0.00 3.62
3 4 1.999735 CATCACATAGTTCGGCGTGTT 59.000 47.619 6.85 0.00 0.00 3.32
5 6 1.921243 TCATCACATAGTTCGGCGTG 58.079 50.000 6.85 0.00 0.00 5.34
7 8 2.540515 AGTTCATCACATAGTTCGGCG 58.459 47.619 0.00 0.00 0.00 6.46
8 9 6.422223 CAATTAGTTCATCACATAGTTCGGC 58.578 40.000 0.00 0.00 0.00 5.54
9 10 6.538742 ACCAATTAGTTCATCACATAGTTCGG 59.461 38.462 0.00 0.00 0.00 4.30
10 11 7.539712 ACCAATTAGTTCATCACATAGTTCG 57.460 36.000 0.00 0.00 0.00 3.95
22 23 9.347934 CGCATACAAATAAAACCAATTAGTTCA 57.652 29.630 0.00 0.00 0.00 3.18
23 24 9.562583 TCGCATACAAATAAAACCAATTAGTTC 57.437 29.630 0.00 0.00 0.00 3.01
24 25 9.915629 TTCGCATACAAATAAAACCAATTAGTT 57.084 25.926 0.00 0.00 0.00 2.24
25 26 9.915629 TTTCGCATACAAATAAAACCAATTAGT 57.084 25.926 0.00 0.00 0.00 2.24
30 31 9.261180 TGAATTTTCGCATACAAATAAAACCAA 57.739 25.926 0.00 0.00 0.00 3.67
31 32 8.704234 GTGAATTTTCGCATACAAATAAAACCA 58.296 29.630 0.00 0.00 37.62 3.67
32 33 7.890717 CGTGAATTTTCGCATACAAATAAAACC 59.109 33.333 4.88 0.00 37.55 3.27
33 34 8.771247 CGTGAATTTTCGCATACAAATAAAAC 57.229 30.769 4.88 0.00 37.55 2.43
47 48 3.661419 GCATGTTTTGGCGTGAATTTTCG 60.661 43.478 0.00 0.04 0.00 3.46
48 49 3.363871 GGCATGTTTTGGCGTGAATTTTC 60.364 43.478 0.00 0.00 41.53 2.29
49 50 2.547634 GGCATGTTTTGGCGTGAATTTT 59.452 40.909 0.00 0.00 41.53 1.82
50 51 2.142319 GGCATGTTTTGGCGTGAATTT 58.858 42.857 0.00 0.00 41.53 1.82
51 52 1.794512 GGCATGTTTTGGCGTGAATT 58.205 45.000 0.00 0.00 41.53 2.17
52 53 3.512978 GGCATGTTTTGGCGTGAAT 57.487 47.368 0.00 0.00 41.53 2.57
59 60 1.732683 GCGGTTCGGCATGTTTTGG 60.733 57.895 0.00 0.00 0.00 3.28
60 61 2.080062 CGCGGTTCGGCATGTTTTG 61.080 57.895 0.00 0.00 33.78 2.44
61 62 2.254051 CGCGGTTCGGCATGTTTT 59.746 55.556 0.00 0.00 33.78 2.43
62 63 4.398598 GCGCGGTTCGGCATGTTT 62.399 61.111 8.83 0.00 38.94 2.83
69 70 2.660552 ATATTCGGCGCGGTTCGG 60.661 61.111 15.06 0.00 38.94 4.30
70 71 1.876453 CTCATATTCGGCGCGGTTCG 61.876 60.000 15.06 6.13 42.12 3.95
71 72 1.853319 CTCATATTCGGCGCGGTTC 59.147 57.895 15.06 0.00 0.00 3.62
72 73 2.244651 GCTCATATTCGGCGCGGTT 61.245 57.895 15.06 6.63 0.00 4.44
73 74 2.661866 GCTCATATTCGGCGCGGT 60.662 61.111 15.06 0.00 0.00 5.68
74 75 3.414700 GGCTCATATTCGGCGCGG 61.415 66.667 8.83 8.94 0.00 6.46
75 76 3.767230 CGGCTCATATTCGGCGCG 61.767 66.667 0.00 0.00 42.11 6.86
76 77 1.291877 AATCGGCTCATATTCGGCGC 61.292 55.000 0.00 0.00 46.96 6.53
78 79 1.461127 GTGAATCGGCTCATATTCGGC 59.539 52.381 0.00 0.00 35.32 5.54
79 80 1.721389 CGTGAATCGGCTCATATTCGG 59.279 52.381 0.00 0.00 35.32 4.30
80 81 1.125021 GCGTGAATCGGCTCATATTCG 59.875 52.381 0.00 0.00 40.26 3.34
81 82 2.135139 TGCGTGAATCGGCTCATATTC 58.865 47.619 0.00 0.00 40.26 1.75
82 83 2.138320 CTGCGTGAATCGGCTCATATT 58.862 47.619 0.00 0.00 40.26 1.28
83 84 1.341209 TCTGCGTGAATCGGCTCATAT 59.659 47.619 0.00 0.00 40.26 1.78
84 85 0.744281 TCTGCGTGAATCGGCTCATA 59.256 50.000 0.00 0.00 40.26 2.15
85 86 0.105593 ATCTGCGTGAATCGGCTCAT 59.894 50.000 0.00 0.00 40.26 2.90
86 87 0.744281 TATCTGCGTGAATCGGCTCA 59.256 50.000 0.00 0.00 40.26 4.26
87 88 1.989165 GATATCTGCGTGAATCGGCTC 59.011 52.381 0.00 0.00 40.26 4.70
88 89 1.667177 CGATATCTGCGTGAATCGGCT 60.667 52.381 0.34 0.00 38.01 5.52
89 90 0.710567 CGATATCTGCGTGAATCGGC 59.289 55.000 0.34 0.00 38.01 5.54
91 92 1.340658 CCCGATATCTGCGTGAATCG 58.659 55.000 0.34 4.82 40.60 3.34
92 93 1.071605 GCCCGATATCTGCGTGAATC 58.928 55.000 0.34 0.00 0.00 2.52
93 94 0.320771 GGCCCGATATCTGCGTGAAT 60.321 55.000 0.34 0.00 0.00 2.57
94 95 1.069090 GGCCCGATATCTGCGTGAA 59.931 57.895 0.34 0.00 0.00 3.18
95 96 2.734591 GGCCCGATATCTGCGTGA 59.265 61.111 0.34 0.00 0.00 4.35
96 97 2.734723 CGGCCCGATATCTGCGTG 60.735 66.667 0.00 0.00 0.00 5.34
97 98 2.306255 AAACGGCCCGATATCTGCGT 62.306 55.000 11.71 0.00 0.00 5.24
98 99 1.157870 AAAACGGCCCGATATCTGCG 61.158 55.000 11.71 0.00 0.00 5.18
99 100 1.021968 AAAAACGGCCCGATATCTGC 58.978 50.000 11.71 3.47 0.00 4.26
100 101 1.333619 CCAAAAACGGCCCGATATCTG 59.666 52.381 11.71 0.00 0.00 2.90
101 102 1.210967 TCCAAAAACGGCCCGATATCT 59.789 47.619 11.71 0.00 0.00 1.98
102 103 1.670791 TCCAAAAACGGCCCGATATC 58.329 50.000 11.71 0.00 0.00 1.63
103 104 2.358322 ATCCAAAAACGGCCCGATAT 57.642 45.000 11.71 0.00 0.00 1.63
104 105 3.278668 TTATCCAAAAACGGCCCGATA 57.721 42.857 11.71 0.00 0.00 2.92
105 106 2.131776 TTATCCAAAAACGGCCCGAT 57.868 45.000 11.71 0.00 0.00 4.18
106 107 1.906990 TTTATCCAAAAACGGCCCGA 58.093 45.000 11.71 0.00 0.00 5.14
107 108 2.726832 TTTTATCCAAAAACGGCCCG 57.273 45.000 0.00 0.00 30.69 6.13
108 109 3.687212 CCAATTTTATCCAAAAACGGCCC 59.313 43.478 0.00 0.00 37.20 5.80
109 110 3.687212 CCCAATTTTATCCAAAAACGGCC 59.313 43.478 0.00 0.00 37.20 6.13
110 111 3.126171 GCCCAATTTTATCCAAAAACGGC 59.874 43.478 0.00 0.00 37.20 5.68
111 112 3.687212 GGCCCAATTTTATCCAAAAACGG 59.313 43.478 0.00 0.00 37.20 4.44
112 113 3.369451 CGGCCCAATTTTATCCAAAAACG 59.631 43.478 0.00 0.00 37.20 3.60
113 114 4.570930 TCGGCCCAATTTTATCCAAAAAC 58.429 39.130 0.00 0.00 37.20 2.43
114 115 4.891992 TCGGCCCAATTTTATCCAAAAA 57.108 36.364 0.00 0.00 37.20 1.94
115 116 4.891992 TTCGGCCCAATTTTATCCAAAA 57.108 36.364 0.00 0.00 38.00 2.44
116 117 6.546428 TTATTCGGCCCAATTTTATCCAAA 57.454 33.333 0.00 0.00 0.00 3.28
117 118 6.463614 CCATTATTCGGCCCAATTTTATCCAA 60.464 38.462 0.00 0.00 0.00 3.53
118 119 5.011533 CCATTATTCGGCCCAATTTTATCCA 59.988 40.000 0.00 0.00 0.00 3.41
119 120 5.478407 CCATTATTCGGCCCAATTTTATCC 58.522 41.667 0.00 0.00 0.00 2.59
120 121 5.478407 CCCATTATTCGGCCCAATTTTATC 58.522 41.667 0.00 0.00 0.00 1.75
121 122 4.262851 GCCCATTATTCGGCCCAATTTTAT 60.263 41.667 0.00 0.00 39.39 1.40
122 123 3.070302 GCCCATTATTCGGCCCAATTTTA 59.930 43.478 0.00 0.00 39.39 1.52
123 124 2.158827 GCCCATTATTCGGCCCAATTTT 60.159 45.455 0.00 0.00 39.39 1.82
124 125 1.416030 GCCCATTATTCGGCCCAATTT 59.584 47.619 0.00 0.00 39.39 1.82
125 126 1.047801 GCCCATTATTCGGCCCAATT 58.952 50.000 0.00 0.00 39.39 2.32
126 127 2.745379 GCCCATTATTCGGCCCAAT 58.255 52.632 0.00 0.00 39.39 3.16
127 128 4.268720 GCCCATTATTCGGCCCAA 57.731 55.556 0.00 0.00 39.39 4.12
131 132 0.958822 ATTTCGGCCCATTATTCGGC 59.041 50.000 0.00 0.00 44.92 5.54
132 133 1.196808 CGATTTCGGCCCATTATTCGG 59.803 52.381 0.00 0.00 35.37 4.30
133 134 2.594529 CGATTTCGGCCCATTATTCG 57.405 50.000 0.00 0.00 35.37 3.34
145 146 2.824041 CCCCAGGTGCCGATTTCG 60.824 66.667 0.00 0.00 39.44 3.46
146 147 3.140814 GCCCCAGGTGCCGATTTC 61.141 66.667 0.00 0.00 0.00 2.17
177 178 4.410400 CTCTGGGGACGGTTGGGC 62.410 72.222 0.00 0.00 38.16 5.36
178 179 4.410400 GCTCTGGGGACGGTTGGG 62.410 72.222 0.00 0.00 38.16 4.12
179 180 4.410400 GGCTCTGGGGACGGTTGG 62.410 72.222 0.00 0.00 38.16 3.77
180 181 4.760047 CGGCTCTGGGGACGGTTG 62.760 72.222 0.00 0.00 38.16 3.77
184 185 1.828660 ATACTCGGCTCTGGGGACG 60.829 63.158 0.00 0.00 0.00 4.79
185 186 1.742768 CATACTCGGCTCTGGGGAC 59.257 63.158 0.00 0.00 0.00 4.46
186 187 2.134287 GCATACTCGGCTCTGGGGA 61.134 63.158 0.00 0.00 0.00 4.81
187 188 2.423446 GCATACTCGGCTCTGGGG 59.577 66.667 0.00 0.00 0.00 4.96
188 189 2.423446 GGCATACTCGGCTCTGGG 59.577 66.667 0.00 0.00 0.00 4.45
189 190 2.028190 CGGCATACTCGGCTCTGG 59.972 66.667 0.00 0.00 0.00 3.86
190 191 2.659897 GCGGCATACTCGGCTCTG 60.660 66.667 0.00 0.00 0.00 3.35
217 218 1.451387 ATAAAAGTCGCCGCCTGGG 60.451 57.895 0.00 0.00 39.58 4.45
218 219 1.721487 CATAAAAGTCGCCGCCTGG 59.279 57.895 0.00 0.00 38.77 4.45
219 220 1.062525 GCATAAAAGTCGCCGCCTG 59.937 57.895 0.00 0.00 0.00 4.85
220 221 2.112815 GGCATAAAAGTCGCCGCCT 61.113 57.895 0.00 0.00 35.79 5.52
221 222 2.407616 GGCATAAAAGTCGCCGCC 59.592 61.111 0.00 0.00 35.79 6.13
224 225 1.017387 CAGGAGGCATAAAAGTCGCC 58.983 55.000 0.00 0.00 46.62 5.54
225 226 1.017387 CCAGGAGGCATAAAAGTCGC 58.983 55.000 0.00 0.00 0.00 5.19
226 227 1.668419 CCCAGGAGGCATAAAAGTCG 58.332 55.000 0.00 0.00 0.00 4.18
227 228 1.410224 CCCCCAGGAGGCATAAAAGTC 60.410 57.143 0.00 0.00 33.47 3.01
228 229 0.631212 CCCCCAGGAGGCATAAAAGT 59.369 55.000 0.00 0.00 33.47 2.66
229 230 3.520623 CCCCCAGGAGGCATAAAAG 57.479 57.895 0.00 0.00 33.47 2.27
251 252 1.813513 AAGAACATCTCCAGCCGTTG 58.186 50.000 0.00 0.00 0.00 4.10
252 253 3.197766 TCATAAGAACATCTCCAGCCGTT 59.802 43.478 0.00 0.00 0.00 4.44
253 254 2.766263 TCATAAGAACATCTCCAGCCGT 59.234 45.455 0.00 0.00 0.00 5.68
254 255 3.459232 TCATAAGAACATCTCCAGCCG 57.541 47.619 0.00 0.00 0.00 5.52
255 256 6.352016 TCTATCATAAGAACATCTCCAGCC 57.648 41.667 0.00 0.00 0.00 4.85
256 257 7.598493 GTCTTCTATCATAAGAACATCTCCAGC 59.402 40.741 0.00 0.00 34.86 4.85
257 258 8.087750 GGTCTTCTATCATAAGAACATCTCCAG 58.912 40.741 0.00 0.00 39.89 3.86
258 259 7.015682 GGGTCTTCTATCATAAGAACATCTCCA 59.984 40.741 3.54 0.00 41.54 3.86
259 260 7.234577 AGGGTCTTCTATCATAAGAACATCTCC 59.765 40.741 3.54 0.00 41.54 3.71
260 261 8.087750 CAGGGTCTTCTATCATAAGAACATCTC 58.912 40.741 3.54 0.00 41.54 2.75
261 262 7.786943 TCAGGGTCTTCTATCATAAGAACATCT 59.213 37.037 3.54 0.00 41.54 2.90
262 263 7.957002 TCAGGGTCTTCTATCATAAGAACATC 58.043 38.462 3.54 0.00 41.54 3.06
263 264 7.472663 GCTCAGGGTCTTCTATCATAAGAACAT 60.473 40.741 3.54 0.00 41.54 2.71
264 265 6.183360 GCTCAGGGTCTTCTATCATAAGAACA 60.183 42.308 3.54 0.00 41.54 3.18
265 266 6.220201 GCTCAGGGTCTTCTATCATAAGAAC 58.780 44.000 0.00 0.00 39.49 3.01
266 267 5.010112 CGCTCAGGGTCTTCTATCATAAGAA 59.990 44.000 0.00 0.00 34.86 2.52
267 268 4.520874 CGCTCAGGGTCTTCTATCATAAGA 59.479 45.833 0.00 0.00 0.00 2.10
268 269 4.520874 TCGCTCAGGGTCTTCTATCATAAG 59.479 45.833 0.00 0.00 0.00 1.73
269 270 4.470602 TCGCTCAGGGTCTTCTATCATAA 58.529 43.478 0.00 0.00 0.00 1.90
270 271 4.075682 CTCGCTCAGGGTCTTCTATCATA 58.924 47.826 0.00 0.00 0.00 2.15
271 272 2.890311 CTCGCTCAGGGTCTTCTATCAT 59.110 50.000 0.00 0.00 0.00 2.45
272 273 2.302260 CTCGCTCAGGGTCTTCTATCA 58.698 52.381 0.00 0.00 0.00 2.15
273 274 1.000717 GCTCGCTCAGGGTCTTCTATC 60.001 57.143 0.00 0.00 0.00 2.08
274 275 1.036707 GCTCGCTCAGGGTCTTCTAT 58.963 55.000 0.00 0.00 0.00 1.98
275 276 1.377366 CGCTCGCTCAGGGTCTTCTA 61.377 60.000 0.00 0.00 0.00 2.10
276 277 2.705821 CGCTCGCTCAGGGTCTTCT 61.706 63.158 0.00 0.00 0.00 2.85
277 278 2.202676 CGCTCGCTCAGGGTCTTC 60.203 66.667 0.00 0.00 0.00 2.87
278 279 2.992114 ACGCTCGCTCAGGGTCTT 60.992 61.111 0.00 0.00 44.99 3.01
282 283 3.655481 AAAAACGCTCGCTCAGGG 58.345 55.556 0.00 0.00 41.01 4.45
296 297 9.372369 CCATGTTACAACTAAAAGTTCCAAAAA 57.628 29.630 0.00 0.00 36.03 1.94
297 298 8.532819 ACCATGTTACAACTAAAAGTTCCAAAA 58.467 29.630 0.00 0.00 36.03 2.44
298 299 8.068892 ACCATGTTACAACTAAAAGTTCCAAA 57.931 30.769 0.00 0.00 36.03 3.28
299 300 7.558444 AGACCATGTTACAACTAAAAGTTCCAA 59.442 33.333 0.00 0.00 36.03 3.53
300 301 7.057894 AGACCATGTTACAACTAAAAGTTCCA 58.942 34.615 0.00 0.00 36.03 3.53
301 302 7.506328 AGACCATGTTACAACTAAAAGTTCC 57.494 36.000 0.00 0.00 36.03 3.62
302 303 9.797556 AAAAGACCATGTTACAACTAAAAGTTC 57.202 29.630 0.00 0.00 36.03 3.01
305 306 9.893305 CCTAAAAGACCATGTTACAACTAAAAG 57.107 33.333 0.00 0.00 0.00 2.27
306 307 8.354426 GCCTAAAAGACCATGTTACAACTAAAA 58.646 33.333 0.00 0.00 0.00 1.52
307 308 7.040271 GGCCTAAAAGACCATGTTACAACTAAA 60.040 37.037 0.00 0.00 0.00 1.85
308 309 6.431852 GGCCTAAAAGACCATGTTACAACTAA 59.568 38.462 0.00 0.00 0.00 2.24
309 310 5.941647 GGCCTAAAAGACCATGTTACAACTA 59.058 40.000 0.00 0.00 0.00 2.24
310 311 4.765339 GGCCTAAAAGACCATGTTACAACT 59.235 41.667 0.00 0.00 0.00 3.16
311 312 4.521256 TGGCCTAAAAGACCATGTTACAAC 59.479 41.667 3.32 0.00 0.00 3.32
312 313 4.730966 TGGCCTAAAAGACCATGTTACAA 58.269 39.130 3.32 0.00 0.00 2.41
313 314 4.374689 TGGCCTAAAAGACCATGTTACA 57.625 40.909 3.32 0.00 0.00 2.41
314 315 7.582667 AATATGGCCTAAAAGACCATGTTAC 57.417 36.000 3.32 0.00 41.68 2.50
315 316 9.349713 CTAAATATGGCCTAAAAGACCATGTTA 57.650 33.333 3.32 3.58 42.37 2.41
316 317 7.839200 ACTAAATATGGCCTAAAAGACCATGTT 59.161 33.333 3.32 2.28 44.27 2.71
317 318 7.354312 ACTAAATATGGCCTAAAAGACCATGT 58.646 34.615 3.32 0.00 43.93 3.21
318 319 7.721399 AGACTAAATATGGCCTAAAAGACCATG 59.279 37.037 3.32 0.00 43.93 3.66
319 320 7.816411 AGACTAAATATGGCCTAAAAGACCAT 58.184 34.615 3.32 0.35 45.94 3.55
320 321 7.092623 TGAGACTAAATATGGCCTAAAAGACCA 60.093 37.037 3.32 0.00 37.99 4.02
321 322 7.280356 TGAGACTAAATATGGCCTAAAAGACC 58.720 38.462 3.32 0.00 0.00 3.85
322 323 7.442666 CCTGAGACTAAATATGGCCTAAAAGAC 59.557 40.741 3.32 0.00 0.00 3.01
323 324 7.347222 TCCTGAGACTAAATATGGCCTAAAAGA 59.653 37.037 3.32 0.00 0.00 2.52
324 325 7.509546 TCCTGAGACTAAATATGGCCTAAAAG 58.490 38.462 3.32 0.00 0.00 2.27
325 326 7.446106 TCCTGAGACTAAATATGGCCTAAAA 57.554 36.000 3.32 0.00 0.00 1.52
326 327 7.280356 GTTCCTGAGACTAAATATGGCCTAAA 58.720 38.462 3.32 0.00 0.00 1.85
327 328 6.183361 GGTTCCTGAGACTAAATATGGCCTAA 60.183 42.308 3.32 0.00 0.00 2.69
328 329 5.307196 GGTTCCTGAGACTAAATATGGCCTA 59.693 44.000 3.32 0.00 0.00 3.93
329 330 4.103311 GGTTCCTGAGACTAAATATGGCCT 59.897 45.833 3.32 0.00 0.00 5.19
330 331 4.141482 TGGTTCCTGAGACTAAATATGGCC 60.141 45.833 0.00 0.00 0.00 5.36
331 332 5.036117 TGGTTCCTGAGACTAAATATGGC 57.964 43.478 0.00 0.00 0.00 4.40
332 333 6.884295 TGTTTGGTTCCTGAGACTAAATATGG 59.116 38.462 0.00 0.00 31.60 2.74
333 334 7.921786 TGTTTGGTTCCTGAGACTAAATATG 57.078 36.000 0.00 0.00 31.60 1.78
336 337 9.838339 CTATATGTTTGGTTCCTGAGACTAAAT 57.162 33.333 0.00 0.00 31.60 1.40
337 338 8.265055 CCTATATGTTTGGTTCCTGAGACTAAA 58.735 37.037 0.00 0.00 0.00 1.85
338 339 7.622081 TCCTATATGTTTGGTTCCTGAGACTAA 59.378 37.037 0.00 0.00 0.00 2.24
339 340 7.130099 TCCTATATGTTTGGTTCCTGAGACTA 58.870 38.462 0.00 0.00 0.00 2.59
340 341 5.964477 TCCTATATGTTTGGTTCCTGAGACT 59.036 40.000 0.00 0.00 0.00 3.24
341 342 6.235231 TCCTATATGTTTGGTTCCTGAGAC 57.765 41.667 0.00 0.00 0.00 3.36
342 343 6.884472 TTCCTATATGTTTGGTTCCTGAGA 57.116 37.500 0.00 0.00 0.00 3.27
343 344 8.525290 AAATTCCTATATGTTTGGTTCCTGAG 57.475 34.615 0.00 0.00 0.00 3.35
344 345 8.893563 AAAATTCCTATATGTTTGGTTCCTGA 57.106 30.769 0.00 0.00 0.00 3.86
402 403 8.941977 GTTTGGTTCACAAGTCCTAAAATTTTT 58.058 29.630 9.06 0.00 40.82 1.94
403 404 8.097662 TGTTTGGTTCACAAGTCCTAAAATTTT 58.902 29.630 8.75 8.75 40.82 1.82
404 405 7.616313 TGTTTGGTTCACAAGTCCTAAAATTT 58.384 30.769 0.00 0.00 40.82 1.82
405 406 7.176589 TGTTTGGTTCACAAGTCCTAAAATT 57.823 32.000 0.00 0.00 40.82 1.82
406 407 6.183360 CCTGTTTGGTTCACAAGTCCTAAAAT 60.183 38.462 0.00 0.00 40.82 1.82
407 408 5.126384 CCTGTTTGGTTCACAAGTCCTAAAA 59.874 40.000 0.00 0.00 40.82 1.52
408 409 4.642885 CCTGTTTGGTTCACAAGTCCTAAA 59.357 41.667 0.00 0.00 40.82 1.85
409 410 4.204012 CCTGTTTGGTTCACAAGTCCTAA 58.796 43.478 0.00 0.00 40.82 2.69
410 411 3.815809 CCTGTTTGGTTCACAAGTCCTA 58.184 45.455 0.00 0.00 40.82 2.94
411 412 2.654863 CCTGTTTGGTTCACAAGTCCT 58.345 47.619 0.00 0.00 40.82 3.85
412 413 1.067060 GCCTGTTTGGTTCACAAGTCC 59.933 52.381 0.00 0.00 40.82 3.85
413 414 1.067060 GGCCTGTTTGGTTCACAAGTC 59.933 52.381 0.00 0.00 40.82 3.01
414 415 1.111277 GGCCTGTTTGGTTCACAAGT 58.889 50.000 0.00 0.00 40.82 3.16
415 416 1.402787 AGGCCTGTTTGGTTCACAAG 58.597 50.000 3.11 0.00 40.82 3.16
416 417 2.738587 TAGGCCTGTTTGGTTCACAA 57.261 45.000 17.99 0.00 38.35 3.33
417 418 2.582052 CTTAGGCCTGTTTGGTTCACA 58.418 47.619 17.99 0.00 38.35 3.58
418 419 1.269723 GCTTAGGCCTGTTTGGTTCAC 59.730 52.381 17.99 0.00 38.35 3.18
419 420 1.616159 GCTTAGGCCTGTTTGGTTCA 58.384 50.000 17.99 0.00 38.35 3.18
463 464 8.258708 GCAACTCCCGATCCTTATATAATAAGT 58.741 37.037 0.00 0.00 0.00 2.24
464 465 7.711339 GGCAACTCCCGATCCTTATATAATAAG 59.289 40.741 0.00 0.56 0.00 1.73
465 466 7.562135 GGCAACTCCCGATCCTTATATAATAA 58.438 38.462 0.00 0.00 0.00 1.40
466 467 7.120923 GGCAACTCCCGATCCTTATATAATA 57.879 40.000 0.00 0.00 0.00 0.98
467 468 5.990668 GGCAACTCCCGATCCTTATATAAT 58.009 41.667 0.00 0.00 0.00 1.28
468 469 5.416271 GGCAACTCCCGATCCTTATATAA 57.584 43.478 0.00 0.00 0.00 0.98
470 471 3.983044 GGCAACTCCCGATCCTTATAT 57.017 47.619 0.00 0.00 0.00 0.86
485 486 2.554462 GAGACTCCCAGAAAAAGGCAAC 59.446 50.000 0.00 0.00 0.00 4.17
486 487 2.489073 GGAGACTCCCAGAAAAAGGCAA 60.489 50.000 10.74 0.00 0.00 4.52
487 488 1.073923 GGAGACTCCCAGAAAAAGGCA 59.926 52.381 10.74 0.00 0.00 4.75
488 489 1.827681 GGAGACTCCCAGAAAAAGGC 58.172 55.000 10.74 0.00 0.00 4.35
489 490 1.946283 GCGGAGACTCCCAGAAAAAGG 60.946 57.143 16.13 0.00 31.13 3.11
490 491 1.270839 TGCGGAGACTCCCAGAAAAAG 60.271 52.381 16.13 0.23 31.13 2.27
491 492 0.762418 TGCGGAGACTCCCAGAAAAA 59.238 50.000 16.13 0.00 31.13 1.94
492 493 0.762418 TTGCGGAGACTCCCAGAAAA 59.238 50.000 16.13 0.90 31.13 2.29
493 494 0.762418 TTTGCGGAGACTCCCAGAAA 59.238 50.000 16.13 9.13 31.13 2.52
494 495 0.762418 TTTTGCGGAGACTCCCAGAA 59.238 50.000 16.13 12.54 31.13 3.02
495 496 0.762418 TTTTTGCGGAGACTCCCAGA 59.238 50.000 16.13 7.41 31.13 3.86
496 497 3.322514 TTTTTGCGGAGACTCCCAG 57.677 52.632 16.13 3.97 31.13 4.45
516 517 9.769093 CAAAATCGATTTAGGTTCTCGTAATTT 57.231 29.630 22.99 0.00 34.19 1.82
517 518 7.908601 GCAAAATCGATTTAGGTTCTCGTAATT 59.091 33.333 22.99 0.17 34.19 1.40
518 519 7.065324 TGCAAAATCGATTTAGGTTCTCGTAAT 59.935 33.333 22.99 0.60 34.19 1.89
519 520 6.369340 TGCAAAATCGATTTAGGTTCTCGTAA 59.631 34.615 22.99 0.00 34.19 3.18
520 521 5.870433 TGCAAAATCGATTTAGGTTCTCGTA 59.130 36.000 22.99 2.87 34.19 3.43
521 522 4.693566 TGCAAAATCGATTTAGGTTCTCGT 59.306 37.500 22.99 2.07 34.19 4.18
522 523 5.163854 ACTGCAAAATCGATTTAGGTTCTCG 60.164 40.000 22.99 9.32 0.00 4.04
523 524 6.183309 ACTGCAAAATCGATTTAGGTTCTC 57.817 37.500 22.99 8.38 0.00 2.87
524 525 6.183360 CGTACTGCAAAATCGATTTAGGTTCT 60.183 38.462 22.99 4.28 0.00 3.01
525 526 5.957796 CGTACTGCAAAATCGATTTAGGTTC 59.042 40.000 22.99 14.55 0.00 3.62
526 527 5.410439 ACGTACTGCAAAATCGATTTAGGTT 59.590 36.000 22.99 5.41 0.00 3.50
527 528 4.933400 ACGTACTGCAAAATCGATTTAGGT 59.067 37.500 22.99 18.82 0.00 3.08
528 529 5.464965 ACGTACTGCAAAATCGATTTAGG 57.535 39.130 22.99 18.28 0.00 2.69
529 530 6.408428 GGTACGTACTGCAAAATCGATTTAG 58.592 40.000 22.99 18.32 0.00 1.85
530 531 6.335176 GGTACGTACTGCAAAATCGATTTA 57.665 37.500 22.99 7.67 0.00 1.40
531 532 5.212589 GGTACGTACTGCAAAATCGATTT 57.787 39.130 24.07 17.60 0.00 2.17
532 533 4.852609 GGTACGTACTGCAAAATCGATT 57.147 40.909 24.07 4.39 0.00 3.34
549 550 3.314357 GGCAATCCAGTAAAATCCGGTAC 59.686 47.826 0.00 0.00 0.00 3.34
550 551 3.547746 GGCAATCCAGTAAAATCCGGTA 58.452 45.455 0.00 0.00 0.00 4.02
551 552 2.375146 GGCAATCCAGTAAAATCCGGT 58.625 47.619 0.00 0.00 0.00 5.28
552 553 1.333619 CGGCAATCCAGTAAAATCCGG 59.666 52.381 0.00 0.00 32.75 5.14
553 554 1.333619 CCGGCAATCCAGTAAAATCCG 59.666 52.381 0.00 0.00 35.80 4.18
554 555 2.618709 CTCCGGCAATCCAGTAAAATCC 59.381 50.000 0.00 0.00 0.00 3.01
555 556 3.541632 TCTCCGGCAATCCAGTAAAATC 58.458 45.455 0.00 0.00 0.00 2.17
556 557 3.644966 TCTCCGGCAATCCAGTAAAAT 57.355 42.857 0.00 0.00 0.00 1.82
557 558 3.278574 CATCTCCGGCAATCCAGTAAAA 58.721 45.455 0.00 0.00 0.00 1.52
558 559 2.917933 CATCTCCGGCAATCCAGTAAA 58.082 47.619 0.00 0.00 0.00 2.01
559 560 1.475034 GCATCTCCGGCAATCCAGTAA 60.475 52.381 0.00 0.00 0.00 2.24
560 561 0.106708 GCATCTCCGGCAATCCAGTA 59.893 55.000 0.00 0.00 0.00 2.74
561 562 1.153086 GCATCTCCGGCAATCCAGT 60.153 57.895 0.00 0.00 0.00 4.00
562 563 0.883814 GAGCATCTCCGGCAATCCAG 60.884 60.000 0.00 0.00 0.00 3.86
563 564 1.146930 GAGCATCTCCGGCAATCCA 59.853 57.895 0.00 0.00 0.00 3.41
564 565 1.599240 GGAGCATCTCCGGCAATCC 60.599 63.158 0.00 0.00 41.08 3.01
565 566 4.055654 GGAGCATCTCCGGCAATC 57.944 61.111 0.00 0.00 41.08 2.67
573 574 5.713792 TGCAACTATAGTAGGAGCATCTC 57.286 43.478 5.65 0.00 35.67 2.75
574 575 6.485830 TTTGCAACTATAGTAGGAGCATCT 57.514 37.500 17.42 0.00 38.71 2.90
575 576 7.553881 TTTTTGCAACTATAGTAGGAGCATC 57.446 36.000 17.42 0.16 38.71 3.91
598 599 7.571025 TCTGACCCTTTTCACTAGTACTTTTT 58.429 34.615 0.00 0.00 0.00 1.94
599 600 7.133133 TCTGACCCTTTTCACTAGTACTTTT 57.867 36.000 0.00 0.00 0.00 2.27
600 601 6.742559 TCTGACCCTTTTCACTAGTACTTT 57.257 37.500 0.00 0.00 0.00 2.66
601 602 6.270231 ACATCTGACCCTTTTCACTAGTACTT 59.730 38.462 0.00 0.00 0.00 2.24
602 603 5.780793 ACATCTGACCCTTTTCACTAGTACT 59.219 40.000 0.00 0.00 0.00 2.73
603 604 5.869888 CACATCTGACCCTTTTCACTAGTAC 59.130 44.000 0.00 0.00 0.00 2.73
604 605 5.778241 TCACATCTGACCCTTTTCACTAGTA 59.222 40.000 0.00 0.00 0.00 1.82
605 606 4.593206 TCACATCTGACCCTTTTCACTAGT 59.407 41.667 0.00 0.00 0.00 2.57
606 607 5.152623 TCACATCTGACCCTTTTCACTAG 57.847 43.478 0.00 0.00 0.00 2.57
607 608 5.071788 AGTTCACATCTGACCCTTTTCACTA 59.928 40.000 0.00 0.00 0.00 2.74
608 609 4.137543 GTTCACATCTGACCCTTTTCACT 58.862 43.478 0.00 0.00 0.00 3.41
609 610 4.023707 CAGTTCACATCTGACCCTTTTCAC 60.024 45.833 0.00 0.00 35.20 3.18
610 611 4.136796 CAGTTCACATCTGACCCTTTTCA 58.863 43.478 0.00 0.00 35.20 2.69
611 612 4.389374 TCAGTTCACATCTGACCCTTTTC 58.611 43.478 0.00 0.00 37.07 2.29
612 613 4.392940 CTCAGTTCACATCTGACCCTTTT 58.607 43.478 0.00 0.00 37.07 2.27
613 614 3.244700 CCTCAGTTCACATCTGACCCTTT 60.245 47.826 0.00 0.00 37.07 3.11
614 615 2.304180 CCTCAGTTCACATCTGACCCTT 59.696 50.000 0.00 0.00 37.07 3.95
615 616 1.905215 CCTCAGTTCACATCTGACCCT 59.095 52.381 0.00 0.00 37.07 4.34
616 617 1.902508 TCCTCAGTTCACATCTGACCC 59.097 52.381 0.00 0.00 37.07 4.46
617 618 2.828520 TCTCCTCAGTTCACATCTGACC 59.171 50.000 0.00 0.00 37.07 4.02
618 619 3.367910 GGTCTCCTCAGTTCACATCTGAC 60.368 52.174 0.00 0.00 37.07 3.51
619 620 2.828520 GGTCTCCTCAGTTCACATCTGA 59.171 50.000 0.00 0.00 39.25 3.27
620 621 2.564504 TGGTCTCCTCAGTTCACATCTG 59.435 50.000 0.00 0.00 0.00 2.90
621 622 2.564947 GTGGTCTCCTCAGTTCACATCT 59.435 50.000 0.00 0.00 0.00 2.90
622 623 2.564947 AGTGGTCTCCTCAGTTCACATC 59.435 50.000 0.00 0.00 0.00 3.06
623 624 2.564947 GAGTGGTCTCCTCAGTTCACAT 59.435 50.000 0.00 0.00 34.87 3.21
624 625 1.964223 GAGTGGTCTCCTCAGTTCACA 59.036 52.381 0.00 0.00 34.87 3.58
625 626 1.964223 TGAGTGGTCTCCTCAGTTCAC 59.036 52.381 0.00 0.00 39.75 3.18
626 627 2.381752 TGAGTGGTCTCCTCAGTTCA 57.618 50.000 0.00 0.00 39.75 3.18
631 632 3.244887 TCTTTCTGAGTGGTCTCCTCA 57.755 47.619 0.00 0.00 39.75 3.86
632 633 4.608948 TTTCTTTCTGAGTGGTCTCCTC 57.391 45.455 0.00 0.00 39.75 3.71
633 634 5.373812 TTTTTCTTTCTGAGTGGTCTCCT 57.626 39.130 0.00 0.00 39.75 3.69
693 694 1.153147 GAGGTTGGGAATCGAGGGC 60.153 63.158 0.00 0.00 0.00 5.19
697 698 0.909623 GGGAAGAGGTTGGGAATCGA 59.090 55.000 0.00 0.00 0.00 3.59
698 699 0.107165 GGGGAAGAGGTTGGGAATCG 60.107 60.000 0.00 0.00 0.00 3.34
699 700 0.107165 CGGGGAAGAGGTTGGGAATC 60.107 60.000 0.00 0.00 0.00 2.52
747 748 3.378399 GAGAAGAGGGCACTCCGGC 62.378 68.421 13.73 1.85 45.11 6.13
748 749 2.726351 GGAGAAGAGGGCACTCCGG 61.726 68.421 13.73 0.00 45.11 5.14
749 750 2.896443 GGAGAAGAGGGCACTCCG 59.104 66.667 13.73 0.00 45.11 4.63
750 751 1.682684 TCGGAGAAGAGGGCACTCC 60.683 63.158 13.73 0.00 45.11 3.85
751 752 1.513622 GTCGGAGAAGAGGGCACTC 59.486 63.158 8.30 8.30 44.31 3.51
752 753 2.344203 CGTCGGAGAAGAGGGCACT 61.344 63.158 0.00 0.00 38.59 4.40
753 754 2.182030 CGTCGGAGAAGAGGGCAC 59.818 66.667 0.00 0.00 38.59 5.01
794 795 4.057428 GGACAGCGTGCTCCGAGT 62.057 66.667 0.00 0.00 39.56 4.18
869 893 4.119862 GCGAGCTATTGGTACATGAAGAA 58.880 43.478 0.00 0.00 39.30 2.52
875 899 2.610479 CGATGGCGAGCTATTGGTACAT 60.610 50.000 0.00 0.00 37.89 2.29
879 903 1.595382 GCGATGGCGAGCTATTGGT 60.595 57.895 10.10 0.00 40.82 3.67
917 941 3.799755 GGCATCGCGAACCACACC 61.800 66.667 22.59 10.76 0.00 4.16
954 978 1.298014 GGCAGTCAGGAAGTCAGGG 59.702 63.158 0.00 0.00 0.00 4.45
955 979 1.298014 GGGCAGTCAGGAAGTCAGG 59.702 63.158 0.00 0.00 0.00 3.86
956 980 1.298014 GGGGCAGTCAGGAAGTCAG 59.702 63.158 0.00 0.00 0.00 3.51
957 981 2.224159 GGGGGCAGTCAGGAAGTCA 61.224 63.158 0.00 0.00 0.00 3.41
958 982 2.671682 GGGGGCAGTCAGGAAGTC 59.328 66.667 0.00 0.00 0.00 3.01
976 1000 4.933064 GAGGCGACGCGGATGGAG 62.933 72.222 14.61 0.00 0.00 3.86
1002 1026 3.589495 AACTTACAGCGAGAGGGTTAC 57.411 47.619 0.00 0.00 0.00 2.50
1003 1027 3.830755 AGAAACTTACAGCGAGAGGGTTA 59.169 43.478 0.00 0.00 0.00 2.85
1008 1032 4.444720 ACGAAAAGAAACTTACAGCGAGAG 59.555 41.667 0.00 0.00 0.00 3.20
1102 1169 3.812019 CAGTACGGTCGCGCCTCT 61.812 66.667 15.78 9.41 34.25 3.69
1116 1183 1.977544 CTCGGGAAGGTCGTCCAGT 60.978 63.158 0.51 0.00 39.70 4.00
1228 1295 0.955428 TCCAGCATGAACTTGTCGGC 60.955 55.000 0.00 0.00 39.69 5.54
1295 1370 3.830192 GGCATGCTTTCTGCGGGG 61.830 66.667 18.92 0.00 46.63 5.73
1296 1377 2.753043 AGGCATGCTTTCTGCGGG 60.753 61.111 18.92 0.00 46.63 6.13
1308 1389 2.250924 CCAAAGGAAAACAGGAGGCAT 58.749 47.619 0.00 0.00 0.00 4.40
1334 1415 2.735857 GCTTTTGCTTGCCTGCGG 60.736 61.111 0.00 0.00 43.35 5.69
1375 1462 2.034558 CAGCCACGATTTCACCAAACTT 59.965 45.455 0.00 0.00 0.00 2.66
1377 1464 1.930371 GCAGCCACGATTTCACCAAAC 60.930 52.381 0.00 0.00 0.00 2.93
1379 1466 1.523154 GGCAGCCACGATTTCACCAA 61.523 55.000 6.55 0.00 0.00 3.67
1387 1474 1.527611 CATCATGGGCAGCCACGAT 60.528 57.895 15.19 8.71 0.00 3.73
1407 1494 2.435418 ATGGGAGACGATGAGGAGC 58.565 57.895 0.00 0.00 0.00 4.70
1428 1515 5.392811 GCAGATGAAGAACTCATTTCCAAGG 60.393 44.000 0.00 0.00 45.23 3.61
1429 1516 5.182570 TGCAGATGAAGAACTCATTTCCAAG 59.817 40.000 0.00 0.00 45.23 3.61
1430 1517 5.072055 TGCAGATGAAGAACTCATTTCCAA 58.928 37.500 0.00 0.00 45.23 3.53
1431 1518 4.654915 TGCAGATGAAGAACTCATTTCCA 58.345 39.130 0.00 0.00 45.23 3.53
1433 1520 5.397326 GGTTGCAGATGAAGAACTCATTTC 58.603 41.667 0.00 0.00 45.23 2.17
1492 1586 8.876275 TGGTTATAAATACCACGTTGACTATC 57.124 34.615 0.00 0.00 40.65 2.08
1494 1588 8.065473 TCTGGTTATAAATACCACGTTGACTA 57.935 34.615 0.00 0.00 40.65 2.59
1496 1590 7.781548 ATCTGGTTATAAATACCACGTTGAC 57.218 36.000 0.00 0.00 40.65 3.18
1611 1708 6.988622 ATGGCGTAGTAGAGAGTCATATAC 57.011 41.667 0.00 0.00 0.00 1.47
1614 1711 4.936411 GCTATGGCGTAGTAGAGAGTCATA 59.064 45.833 14.88 0.00 32.72 2.15
1616 1713 3.139850 GCTATGGCGTAGTAGAGAGTCA 58.860 50.000 14.88 0.00 32.72 3.41
1617 1714 3.817148 GCTATGGCGTAGTAGAGAGTC 57.183 52.381 14.88 0.00 32.72 3.36
1738 1835 5.163258 GGACTGGTGGATATTGAGATGAACT 60.163 44.000 0.00 0.00 0.00 3.01
1743 1840 3.392616 GGTGGACTGGTGGATATTGAGAT 59.607 47.826 0.00 0.00 0.00 2.75
1786 1883 6.044682 CCCAGCCATGATATTTTTCAAGTTC 58.955 40.000 0.00 0.00 0.00 3.01
1887 1984 2.069273 AGCAACGACTCATGTAAGCAC 58.931 47.619 0.00 0.00 0.00 4.40
1946 2043 6.707440 AAACATCTATGGTGTGTTTGTCAA 57.293 33.333 12.01 0.00 42.56 3.18
2009 2106 2.033801 CCGGTCAAATCAATCTGATGCC 59.966 50.000 0.00 0.00 37.15 4.40
2020 2117 0.465642 GGATCCACCCCGGTCAAATC 60.466 60.000 6.95 0.00 35.57 2.17
2054 2151 2.104963 GGGATCATTGTCACCCCTAGAC 59.895 54.545 0.00 0.00 36.65 2.59
2060 2157 1.760613 TCGTAGGGATCATTGTCACCC 59.239 52.381 0.00 0.00 42.36 4.61
2078 2181 1.218763 CTCATTGAGAGCAGCCATCG 58.781 55.000 8.00 0.00 37.59 3.84
2125 2234 1.663702 GCAACACACGCCTACGAGT 60.664 57.895 0.00 0.00 44.17 4.18
2126 2235 1.014044 ATGCAACACACGCCTACGAG 61.014 55.000 0.00 0.00 43.93 4.18
2127 2236 0.601576 AATGCAACACACGCCTACGA 60.602 50.000 0.00 0.00 43.93 3.43
2189 2298 4.148696 CGCACAATTTGATTTCTTGGTCAC 59.851 41.667 2.79 0.00 0.00 3.67
2313 2422 1.910722 AGGCACTGCATCCTACAGG 59.089 57.895 2.82 0.00 39.55 4.00
2330 2439 5.695363 CAGCAGTGTATAACATCCAGATCAG 59.305 44.000 0.00 0.00 0.00 2.90
2388 2503 6.267471 TCAACCAGGAACAAAAGATAATGCTT 59.733 34.615 0.00 0.00 0.00 3.91
2588 2740 6.821388 TCTTAGAGAGCAATTATCTGTTCCC 58.179 40.000 0.00 0.00 0.00 3.97
2666 2828 6.767524 TGTACCAACACTTGTTTTCTCAAT 57.232 33.333 0.00 0.00 35.83 2.57
2719 2881 9.311916 CCAAAATAATTCACTCAAACAACTTGA 57.688 29.630 0.00 0.00 41.93 3.02
2720 2882 9.097257 ACCAAAATAATTCACTCAAACAACTTG 57.903 29.630 0.00 0.00 36.25 3.16
2721 2883 9.665719 AACCAAAATAATTCACTCAAACAACTT 57.334 25.926 0.00 0.00 0.00 2.66
2722 2884 9.097257 CAACCAAAATAATTCACTCAAACAACT 57.903 29.630 0.00 0.00 0.00 3.16
2723 2885 9.092876 TCAACCAAAATAATTCACTCAAACAAC 57.907 29.630 0.00 0.00 0.00 3.32
2724 2886 9.311916 CTCAACCAAAATAATTCACTCAAACAA 57.688 29.630 0.00 0.00 0.00 2.83
2725 2887 8.474025 ACTCAACCAAAATAATTCACTCAAACA 58.526 29.630 0.00 0.00 0.00 2.83
2726 2888 8.871686 ACTCAACCAAAATAATTCACTCAAAC 57.128 30.769 0.00 0.00 0.00 2.93
2753 2923 7.342026 GGAAGGATCCAAACTAACCATTACAAT 59.658 37.037 15.82 0.00 45.79 2.71
2908 3081 0.678395 ATTGACACCAAATTGCGCCA 59.322 45.000 4.18 0.00 35.67 5.69
2983 3156 8.652810 AATTCTTTCTCAAAACATGTCAAAGG 57.347 30.769 0.00 0.00 33.35 3.11
3117 3484 2.200067 CCTCGCTCTGAATGATCACAC 58.800 52.381 0.00 0.00 0.00 3.82
3128 3495 3.791887 CAGTACGATTTTACCTCGCTCTG 59.208 47.826 0.00 0.00 39.71 3.35
3129 3496 3.181489 CCAGTACGATTTTACCTCGCTCT 60.181 47.826 0.00 0.00 39.71 4.09
3224 3591 7.880713 TGTGACCTATGCAAGAGTTTACATTAA 59.119 33.333 0.00 0.00 0.00 1.40
3239 3606 4.265073 AGACTTTTCCATGTGACCTATGC 58.735 43.478 0.00 0.00 0.00 3.14
3241 3608 5.189736 TGCTAGACTTTTCCATGTGACCTAT 59.810 40.000 0.00 0.00 0.00 2.57
3245 3612 5.886960 ATTGCTAGACTTTTCCATGTGAC 57.113 39.130 0.00 0.00 0.00 3.67
3261 3628 7.201591 CCAACACAAACAACATTGAAATTGCTA 60.202 33.333 0.00 0.00 34.38 3.49
3424 3793 9.083422 GCATCCCTAGAAGCATATATCATAGTA 57.917 37.037 0.00 0.00 36.71 1.82
3437 3806 4.837972 CCTTATTAGGCATCCCTAGAAGC 58.162 47.826 0.00 0.00 44.34 3.86
3486 3855 6.323266 GCATATCAGATGATGAAAGGCAATC 58.677 40.000 5.58 0.00 42.53 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.