Multiple sequence alignment - TraesCS2B01G107700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G107700 chr2B 100.000 3980 0 0 1 3980 68594407 68590428 0.000000e+00 7350.0
1 TraesCS2B01G107700 chr2D 94.356 2445 90 15 528 2958 43900179 43897769 0.000000e+00 3707.0
2 TraesCS2B01G107700 chr2D 97.259 985 23 4 2997 3980 43957205 43958186 0.000000e+00 1666.0
3 TraesCS2B01G107700 chr2D 87.270 652 60 10 2311 2962 43917695 43918323 0.000000e+00 723.0
4 TraesCS2B01G107700 chr2D 80.266 451 61 21 104 543 43900916 43900483 8.300000e-82 315.0
5 TraesCS2B01G107700 chr2A 93.747 2415 119 17 559 2956 46312751 46315150 0.000000e+00 3594.0
6 TraesCS2B01G107700 chr2A 85.556 180 10 5 1 177 47394628 47394462 1.470000e-39 174.0
7 TraesCS2B01G107700 chr4B 72.176 1319 314 35 1633 2940 407409842 407408566 1.760000e-93 353.0
8 TraesCS2B01G107700 chr4B 78.157 293 60 4 1186 1476 407410313 407410023 2.440000e-42 183.0
9 TraesCS2B01G107700 chr4A 72.175 1301 312 32 1630 2920 142796801 142798061 6.330000e-93 351.0
10 TraesCS2B01G107700 chr4A 92.500 40 1 2 248 287 4482023 4481986 5.560000e-04 56.5
11 TraesCS2B01G107700 chr4D 72.093 1290 310 32 1633 2912 327846517 327845268 3.810000e-90 342.0
12 TraesCS2B01G107700 chr4D 77.441 297 63 4 1182 1476 327846992 327846698 1.470000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G107700 chr2B 68590428 68594407 3979 True 7350 7350 100.0000 1 3980 1 chr2B.!!$R1 3979
1 TraesCS2B01G107700 chr2D 43897769 43900916 3147 True 2011 3707 87.3110 104 2958 2 chr2D.!!$R1 2854
2 TraesCS2B01G107700 chr2D 43957205 43958186 981 False 1666 1666 97.2590 2997 3980 1 chr2D.!!$F2 983
3 TraesCS2B01G107700 chr2D 43917695 43918323 628 False 723 723 87.2700 2311 2962 1 chr2D.!!$F1 651
4 TraesCS2B01G107700 chr2A 46312751 46315150 2399 False 3594 3594 93.7470 559 2956 1 chr2A.!!$F1 2397
5 TraesCS2B01G107700 chr4B 407408566 407410313 1747 True 268 353 75.1665 1186 2940 2 chr4B.!!$R1 1754
6 TraesCS2B01G107700 chr4A 142796801 142798061 1260 False 351 351 72.1750 1630 2920 1 chr4A.!!$F1 1290
7 TraesCS2B01G107700 chr4D 327845268 327846992 1724 True 258 342 74.7670 1182 2912 2 chr4D.!!$R1 1730

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.179134 CAGTCGGATCGTCCTTCCAC 60.179 60.0 3.15 0.0 33.30 4.02 F
908 1282 0.247736 AGACTCGTTCCTCACCATGC 59.752 55.0 0.00 0.0 0.00 4.06 F
977 1358 0.882927 CAGAAGAAAACCCGTCGCCA 60.883 55.0 0.00 0.0 0.00 5.69 F
1899 2306 1.165907 CCAAGGTGCTCAACTGCGAA 61.166 55.0 0.00 0.0 35.36 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1425 1808 1.105167 CCGTCGCCTGTATCCTGGTA 61.105 60.000 0.00 0.0 32.49 3.25 R
2748 3177 1.739562 GCTCACGTTGCTCTCCCTG 60.740 63.158 3.33 0.0 0.00 4.45 R
2950 3379 1.095600 TCGATCAGGAGAAGACCACG 58.904 55.000 0.00 0.0 0.00 4.94 R
3694 4124 1.736681 GCTTCTGCTGTTGAGATGTCC 59.263 52.381 0.00 0.0 36.03 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.712228 AAATTTAGGGGAATCTCCACATATTC 57.288 34.615 0.32 0.00 44.30 1.75
26 27 6.840090 TTTAGGGGAATCTCCACATATTCA 57.160 37.500 0.32 0.00 44.30 2.57
27 28 4.989875 AGGGGAATCTCCACATATTCAG 57.010 45.455 0.32 0.00 44.30 3.02
28 29 4.570926 AGGGGAATCTCCACATATTCAGA 58.429 43.478 0.32 0.00 44.30 3.27
29 30 4.977739 AGGGGAATCTCCACATATTCAGAA 59.022 41.667 0.32 0.00 44.30 3.02
30 31 5.433051 AGGGGAATCTCCACATATTCAGAAA 59.567 40.000 0.32 0.00 44.30 2.52
31 32 6.068853 AGGGGAATCTCCACATATTCAGAAAA 60.069 38.462 0.32 0.00 44.30 2.29
32 33 6.039829 GGGGAATCTCCACATATTCAGAAAAC 59.960 42.308 0.00 0.00 40.54 2.43
33 34 6.238484 GGGAATCTCCACATATTCAGAAAACG 60.238 42.308 0.00 0.00 38.64 3.60
34 35 6.538742 GGAATCTCCACATATTCAGAAAACGA 59.461 38.462 0.00 0.00 36.28 3.85
35 36 6.910536 ATCTCCACATATTCAGAAAACGAC 57.089 37.500 0.00 0.00 0.00 4.34
36 37 6.037786 TCTCCACATATTCAGAAAACGACT 57.962 37.500 0.00 0.00 0.00 4.18
37 38 7.165460 TCTCCACATATTCAGAAAACGACTA 57.835 36.000 0.00 0.00 0.00 2.59
38 39 7.033791 TCTCCACATATTCAGAAAACGACTAC 58.966 38.462 0.00 0.00 0.00 2.73
39 40 6.931838 TCCACATATTCAGAAAACGACTACT 58.068 36.000 0.00 0.00 0.00 2.57
40 41 8.058667 TCCACATATTCAGAAAACGACTACTA 57.941 34.615 0.00 0.00 0.00 1.82
41 42 8.525316 TCCACATATTCAGAAAACGACTACTAA 58.475 33.333 0.00 0.00 0.00 2.24
42 43 9.146984 CCACATATTCAGAAAACGACTACTAAA 57.853 33.333 0.00 0.00 0.00 1.85
44 45 9.924650 ACATATTCAGAAAACGACTACTAAAGT 57.075 29.630 0.00 0.00 42.80 2.66
47 48 8.754230 ATTCAGAAAACGACTACTAAAGTACC 57.246 34.615 0.00 0.00 39.07 3.34
48 49 7.275888 TCAGAAAACGACTACTAAAGTACCA 57.724 36.000 0.00 0.00 39.07 3.25
49 50 7.141363 TCAGAAAACGACTACTAAAGTACCAC 58.859 38.462 0.00 0.00 39.07 4.16
50 51 6.087291 CAGAAAACGACTACTAAAGTACCACG 59.913 42.308 0.00 0.00 39.07 4.94
51 52 3.477899 ACGACTACTAAAGTACCACGC 57.522 47.619 0.00 0.00 39.07 5.34
52 53 3.077359 ACGACTACTAAAGTACCACGCT 58.923 45.455 0.00 0.00 39.07 5.07
53 54 3.503748 ACGACTACTAAAGTACCACGCTT 59.496 43.478 0.00 0.00 39.07 4.68
54 55 4.695455 ACGACTACTAAAGTACCACGCTTA 59.305 41.667 0.00 0.00 39.07 3.09
55 56 5.024555 CGACTACTAAAGTACCACGCTTAC 58.975 45.833 0.00 0.00 39.07 2.34
56 57 5.390885 CGACTACTAAAGTACCACGCTTACA 60.391 44.000 0.00 0.00 39.07 2.41
57 58 6.521151 ACTACTAAAGTACCACGCTTACAT 57.479 37.500 0.00 0.00 36.36 2.29
58 59 6.928520 ACTACTAAAGTACCACGCTTACATT 58.071 36.000 0.00 0.00 36.36 2.71
59 60 7.381323 ACTACTAAAGTACCACGCTTACATTT 58.619 34.615 0.00 0.00 36.36 2.32
60 61 7.874528 ACTACTAAAGTACCACGCTTACATTTT 59.125 33.333 0.00 0.00 36.36 1.82
61 62 9.357652 CTACTAAAGTACCACGCTTACATTTTA 57.642 33.333 0.00 0.00 0.00 1.52
62 63 8.021955 ACTAAAGTACCACGCTTACATTTTAC 57.978 34.615 0.00 0.00 0.00 2.01
63 64 5.520022 AAGTACCACGCTTACATTTTACG 57.480 39.130 0.00 0.00 0.00 3.18
64 65 4.808558 AGTACCACGCTTACATTTTACGA 58.191 39.130 0.00 0.00 0.00 3.43
65 66 5.229423 AGTACCACGCTTACATTTTACGAA 58.771 37.500 0.00 0.00 0.00 3.85
66 67 5.870978 AGTACCACGCTTACATTTTACGAAT 59.129 36.000 0.00 0.00 0.00 3.34
67 68 4.965062 ACCACGCTTACATTTTACGAATG 58.035 39.130 0.00 0.00 0.00 2.67
68 69 4.142773 ACCACGCTTACATTTTACGAATGG 60.143 41.667 0.00 0.00 32.14 3.16
69 70 4.142773 CCACGCTTACATTTTACGAATGGT 60.143 41.667 0.00 0.00 32.14 3.55
70 71 5.019498 CACGCTTACATTTTACGAATGGTC 58.981 41.667 0.00 0.00 32.14 4.02
71 72 4.933400 ACGCTTACATTTTACGAATGGTCT 59.067 37.500 0.00 0.00 32.14 3.85
72 73 5.163893 ACGCTTACATTTTACGAATGGTCTG 60.164 40.000 0.00 0.00 32.14 3.51
73 74 5.569413 GCTTACATTTTACGAATGGTCTGG 58.431 41.667 0.00 0.00 32.14 3.86
74 75 5.554822 TTACATTTTACGAATGGTCTGGC 57.445 39.130 0.00 0.00 32.14 4.85
75 76 2.752903 ACATTTTACGAATGGTCTGGCC 59.247 45.455 0.00 0.00 37.90 5.36
83 84 2.284625 TGGTCTGGCCAGTCGGAT 60.285 61.111 31.58 0.00 43.61 4.18
84 85 2.359169 TGGTCTGGCCAGTCGGATC 61.359 63.158 31.58 14.22 43.61 3.36
85 86 2.105128 GTCTGGCCAGTCGGATCG 59.895 66.667 31.58 5.23 0.00 3.69
86 87 2.362503 TCTGGCCAGTCGGATCGT 60.363 61.111 31.58 0.00 0.00 3.73
87 88 2.105128 CTGGCCAGTCGGATCGTC 59.895 66.667 25.53 0.00 0.00 4.20
88 89 3.432051 CTGGCCAGTCGGATCGTCC 62.432 68.421 25.53 0.00 0.00 4.79
89 90 3.148279 GGCCAGTCGGATCGTCCT 61.148 66.667 0.00 0.00 33.30 3.85
90 91 2.722201 GGCCAGTCGGATCGTCCTT 61.722 63.158 0.00 0.00 33.30 3.36
91 92 1.227002 GCCAGTCGGATCGTCCTTC 60.227 63.158 3.15 0.00 33.30 3.46
92 93 1.437986 CCAGTCGGATCGTCCTTCC 59.562 63.158 3.15 0.00 33.30 3.46
93 94 1.320344 CCAGTCGGATCGTCCTTCCA 61.320 60.000 3.15 0.00 33.30 3.53
94 95 0.179134 CAGTCGGATCGTCCTTCCAC 60.179 60.000 3.15 0.00 33.30 4.02
95 96 1.141234 GTCGGATCGTCCTTCCACC 59.859 63.158 3.15 0.00 33.30 4.61
96 97 1.304630 TCGGATCGTCCTTCCACCA 60.305 57.895 3.15 0.00 33.30 4.17
97 98 0.686441 TCGGATCGTCCTTCCACCAT 60.686 55.000 3.15 0.00 33.30 3.55
98 99 0.249489 CGGATCGTCCTTCCACCATC 60.249 60.000 3.15 0.00 33.30 3.51
99 100 1.123928 GGATCGTCCTTCCACCATCT 58.876 55.000 0.00 0.00 32.53 2.90
100 101 2.317040 GGATCGTCCTTCCACCATCTA 58.683 52.381 0.00 0.00 32.53 1.98
101 102 2.297597 GGATCGTCCTTCCACCATCTAG 59.702 54.545 0.00 0.00 32.53 2.43
102 103 2.526888 TCGTCCTTCCACCATCTAGT 57.473 50.000 0.00 0.00 0.00 2.57
103 104 2.816411 TCGTCCTTCCACCATCTAGTT 58.184 47.619 0.00 0.00 0.00 2.24
104 105 2.496070 TCGTCCTTCCACCATCTAGTTG 59.504 50.000 0.00 0.00 0.00 3.16
105 106 2.233922 CGTCCTTCCACCATCTAGTTGT 59.766 50.000 0.30 0.00 0.00 3.32
106 107 3.600388 GTCCTTCCACCATCTAGTTGTG 58.400 50.000 0.30 1.91 0.00 3.33
107 108 3.008049 GTCCTTCCACCATCTAGTTGTGT 59.992 47.826 0.30 0.00 0.00 3.72
112 113 4.412843 TCCACCATCTAGTTGTGTGTCTA 58.587 43.478 15.39 4.76 0.00 2.59
147 148 1.965754 AATGAGAGAGGAGGGTGCGC 61.966 60.000 0.00 0.00 0.00 6.09
177 178 7.725251 AGCTTCATTAAATTTGTCAAGGAACA 58.275 30.769 0.00 0.00 0.00 3.18
200 230 6.012508 ACATCCTTCCACCATCTCTCTAAAAA 60.013 38.462 0.00 0.00 0.00 1.94
201 231 6.642733 TCCTTCCACCATCTCTCTAAAAAT 57.357 37.500 0.00 0.00 0.00 1.82
202 232 6.653989 TCCTTCCACCATCTCTCTAAAAATC 58.346 40.000 0.00 0.00 0.00 2.17
203 233 6.445139 TCCTTCCACCATCTCTCTAAAAATCT 59.555 38.462 0.00 0.00 0.00 2.40
206 236 7.257790 TCCACCATCTCTCTAAAAATCTTGA 57.742 36.000 0.00 0.00 0.00 3.02
207 237 7.865820 TCCACCATCTCTCTAAAAATCTTGAT 58.134 34.615 0.00 0.00 0.00 2.57
208 238 7.989741 TCCACCATCTCTCTAAAAATCTTGATC 59.010 37.037 0.00 0.00 0.00 2.92
209 239 7.228308 CCACCATCTCTCTAAAAATCTTGATCC 59.772 40.741 0.00 0.00 0.00 3.36
210 240 7.228308 CACCATCTCTCTAAAAATCTTGATCCC 59.772 40.741 0.00 0.00 0.00 3.85
211 241 7.092264 ACCATCTCTCTAAAAATCTTGATCCCA 60.092 37.037 0.00 0.00 0.00 4.37
216 246 8.511604 TCTCTAAAAATCTTGATCCCACATTC 57.488 34.615 0.00 0.00 0.00 2.67
227 257 8.448816 TCTTGATCCCACATTCTCTACTATCTA 58.551 37.037 0.00 0.00 0.00 1.98
289 319 9.853921 CTTAAAAAGAATGCAAAGTTTCATGTC 57.146 29.630 0.00 0.00 0.00 3.06
293 323 8.579682 AAAGAATGCAAAGTTTCATGTCTAAC 57.420 30.769 0.00 0.00 0.00 2.34
349 379 9.750125 ACTTACCTTTTGAATCAATTTCACTTC 57.250 29.630 0.00 0.00 43.99 3.01
372 402 9.460906 CTTCAACTTAGTTACTAAACTTCTCGT 57.539 33.333 6.29 0.00 43.60 4.18
389 419 8.421673 ACTTCTCGTCAAAATAAGTATAAGGC 57.578 34.615 0.00 0.00 0.00 4.35
415 445 3.009723 CACGGGCAGATAAATCACAAGT 58.990 45.455 0.00 0.00 0.00 3.16
420 450 5.123186 CGGGCAGATAAATCACAAGTTAACA 59.877 40.000 8.61 0.00 0.00 2.41
462 492 2.404265 TGCAACGAAAGAGCATTGTG 57.596 45.000 0.00 0.00 39.75 3.33
463 493 1.675483 TGCAACGAAAGAGCATTGTGT 59.325 42.857 0.00 0.00 39.75 3.72
467 497 3.813529 ACGAAAGAGCATTGTGTTAGC 57.186 42.857 0.00 0.00 0.00 3.09
468 498 2.484264 ACGAAAGAGCATTGTGTTAGCC 59.516 45.455 0.00 0.00 0.00 3.93
496 526 4.825546 AAATCATCTTGGCGCTATCTTG 57.174 40.909 7.64 0.22 0.00 3.02
498 528 1.202687 TCATCTTGGCGCTATCTTGGG 60.203 52.381 7.64 0.00 0.00 4.12
509 539 2.749800 GCTATCTTGGGGGCCTGTTTAG 60.750 54.545 0.84 0.00 0.00 1.85
518 548 3.590824 CCTGTTTAGGCTTGGCGG 58.409 61.111 0.00 0.00 37.25 6.13
532 562 3.617288 GCTTGGCGGGATTTGAAAAATCT 60.617 43.478 11.39 0.00 0.00 2.40
554 903 2.492881 TGCATCACTTGGCAGGTTTATG 59.507 45.455 14.19 14.19 34.58 1.90
560 909 2.899256 ACTTGGCAGGTTTATGTGCATT 59.101 40.909 0.00 0.00 41.75 3.56
572 921 8.134895 AGGTTTATGTGCATTTTATAATCACCG 58.865 33.333 0.00 0.00 29.08 4.94
583 932 6.371809 TTTATAATCACCGAGTCCAAATGC 57.628 37.500 0.00 0.00 0.00 3.56
611 960 3.005472 CCAACCGAATCGAATAGCTAGGA 59.995 47.826 3.36 0.00 0.00 2.94
616 965 4.498345 CCGAATCGAATAGCTAGGATAGGC 60.498 50.000 3.36 0.00 39.70 3.93
665 1018 6.310224 CGGCCACCACTAAAAATTAAAAGATG 59.690 38.462 2.24 0.00 0.00 2.90
747 1100 4.699257 AGAGGAAGATGCAGACAATTTCAC 59.301 41.667 0.00 0.00 0.00 3.18
775 1133 1.005748 CCGACTGTCAGCAGCTTCA 60.006 57.895 8.73 0.00 46.30 3.02
810 1184 4.282195 TGCATTTCATTTTTAACCCGACCT 59.718 37.500 0.00 0.00 0.00 3.85
828 1202 0.954452 CTTGTCAACCTGGTTCTGGC 59.046 55.000 9.62 2.24 0.00 4.85
849 1223 2.980233 GTGACCTGCGCCTGCTTT 60.980 61.111 4.18 0.00 43.34 3.51
905 1279 0.679505 CCAAGACTCGTTCCTCACCA 59.320 55.000 0.00 0.00 0.00 4.17
906 1280 1.276421 CCAAGACTCGTTCCTCACCAT 59.724 52.381 0.00 0.00 0.00 3.55
907 1281 2.341257 CAAGACTCGTTCCTCACCATG 58.659 52.381 0.00 0.00 0.00 3.66
908 1282 0.247736 AGACTCGTTCCTCACCATGC 59.752 55.000 0.00 0.00 0.00 4.06
973 1354 1.241990 GGGGCAGAAGAAAACCCGTC 61.242 60.000 0.00 0.00 43.82 4.79
977 1358 0.882927 CAGAAGAAAACCCGTCGCCA 60.883 55.000 0.00 0.00 0.00 5.69
1039 1422 2.035155 TCGCCCTCGTCTTCCTCA 59.965 61.111 0.00 0.00 36.96 3.86
1053 1436 2.508891 CCTCATGTTCGTCGCGCTC 61.509 63.158 5.56 0.00 0.00 5.03
1123 1506 1.592400 CGGCGTCTTCCTCACCTACA 61.592 60.000 0.00 0.00 0.00 2.74
1830 2237 3.760035 CGGGAGGTGGACACGAGG 61.760 72.222 0.00 0.00 0.00 4.63
1899 2306 1.165907 CCAAGGTGCTCAACTGCGAA 61.166 55.000 0.00 0.00 35.36 4.70
2104 2511 4.740822 CCCCGGCCAACTTCAGGG 62.741 72.222 2.24 2.52 41.68 4.45
2107 2514 2.742372 CGGCCAACTTCAGGGTCG 60.742 66.667 2.24 0.00 46.67 4.79
2133 2540 3.589654 CTCGCCGCTCAACCAGGAA 62.590 63.158 0.00 0.00 0.00 3.36
2249 2656 3.086733 TGTGCAACATCACCGTTCA 57.913 47.368 0.00 0.00 45.67 3.18
2250 2657 1.383523 TGTGCAACATCACCGTTCAA 58.616 45.000 0.00 0.00 45.67 2.69
2262 2669 3.550656 GTTCAAGACGACGCCAGG 58.449 61.111 0.00 0.00 0.00 4.45
2939 3368 4.064768 CCAGGGGGCTGGCATTCA 62.065 66.667 2.88 0.00 37.72 2.57
2962 3391 2.126031 GCCGTCGTGGTCTTCTCC 60.126 66.667 0.00 0.00 41.21 3.71
2963 3392 2.637383 GCCGTCGTGGTCTTCTCCT 61.637 63.158 0.00 0.00 41.21 3.69
2964 3393 1.213013 CCGTCGTGGTCTTCTCCTG 59.787 63.158 0.00 0.00 0.00 3.86
2965 3394 1.241990 CCGTCGTGGTCTTCTCCTGA 61.242 60.000 0.00 0.00 0.00 3.86
2966 3395 0.811915 CGTCGTGGTCTTCTCCTGAT 59.188 55.000 0.00 0.00 0.00 2.90
2967 3396 1.202200 CGTCGTGGTCTTCTCCTGATC 60.202 57.143 0.00 0.00 0.00 2.92
2968 3397 1.095600 TCGTGGTCTTCTCCTGATCG 58.904 55.000 0.00 0.00 0.00 3.69
2969 3398 1.095600 CGTGGTCTTCTCCTGATCGA 58.904 55.000 0.00 0.00 0.00 3.59
2970 3399 1.202200 CGTGGTCTTCTCCTGATCGAC 60.202 57.143 0.00 0.00 0.00 4.20
2971 3400 2.096248 GTGGTCTTCTCCTGATCGACT 58.904 52.381 0.00 0.00 0.00 4.18
2972 3401 3.280295 GTGGTCTTCTCCTGATCGACTA 58.720 50.000 0.00 0.00 0.00 2.59
2973 3402 3.065648 GTGGTCTTCTCCTGATCGACTAC 59.934 52.174 0.00 0.00 32.29 2.73
2974 3403 3.280295 GGTCTTCTCCTGATCGACTACA 58.720 50.000 0.00 0.00 0.00 2.74
2975 3404 3.886505 GGTCTTCTCCTGATCGACTACAT 59.113 47.826 0.00 0.00 0.00 2.29
2976 3405 4.339814 GGTCTTCTCCTGATCGACTACATT 59.660 45.833 0.00 0.00 0.00 2.71
2977 3406 5.163499 GGTCTTCTCCTGATCGACTACATTT 60.163 44.000 0.00 0.00 0.00 2.32
2978 3407 5.746245 GTCTTCTCCTGATCGACTACATTTG 59.254 44.000 0.00 0.00 0.00 2.32
2979 3408 5.652452 TCTTCTCCTGATCGACTACATTTGA 59.348 40.000 0.00 0.00 0.00 2.69
2980 3409 5.914898 TCTCCTGATCGACTACATTTGAA 57.085 39.130 0.00 0.00 0.00 2.69
2981 3410 6.471233 TCTCCTGATCGACTACATTTGAAT 57.529 37.500 0.00 0.00 0.00 2.57
2982 3411 6.878317 TCTCCTGATCGACTACATTTGAATT 58.122 36.000 0.00 0.00 0.00 2.17
2983 3412 7.331026 TCTCCTGATCGACTACATTTGAATTT 58.669 34.615 0.00 0.00 0.00 1.82
2984 3413 7.824289 TCTCCTGATCGACTACATTTGAATTTT 59.176 33.333 0.00 0.00 0.00 1.82
2985 3414 7.751732 TCCTGATCGACTACATTTGAATTTTG 58.248 34.615 0.00 0.00 0.00 2.44
2986 3415 6.968904 CCTGATCGACTACATTTGAATTTTGG 59.031 38.462 0.00 0.00 0.00 3.28
2987 3416 7.148255 CCTGATCGACTACATTTGAATTTTGGA 60.148 37.037 0.00 0.00 0.00 3.53
2988 3417 7.751732 TGATCGACTACATTTGAATTTTGGAG 58.248 34.615 0.00 0.00 0.00 3.86
2989 3418 5.938322 TCGACTACATTTGAATTTTGGAGC 58.062 37.500 0.00 0.00 0.00 4.70
2990 3419 5.471797 TCGACTACATTTGAATTTTGGAGCA 59.528 36.000 0.00 0.00 0.00 4.26
2991 3420 6.016693 TCGACTACATTTGAATTTTGGAGCAA 60.017 34.615 0.00 0.00 0.00 3.91
2992 3421 6.808212 CGACTACATTTGAATTTTGGAGCAAT 59.192 34.615 0.00 0.00 0.00 3.56
2993 3422 7.329226 CGACTACATTTGAATTTTGGAGCAATT 59.671 33.333 0.00 0.00 0.00 2.32
2994 3423 8.907222 ACTACATTTGAATTTTGGAGCAATTT 57.093 26.923 0.00 0.00 0.00 1.82
2995 3424 9.341078 ACTACATTTGAATTTTGGAGCAATTTT 57.659 25.926 0.00 0.00 0.00 1.82
3076 3505 4.932146 ACTGTTTTTCCAAAGGATTGTCG 58.068 39.130 0.00 0.00 34.60 4.35
3248 3678 7.519927 AGTAGTTAAACCCACCTCAACAATTA 58.480 34.615 0.00 0.00 0.00 1.40
3260 3690 5.581085 ACCTCAACAATTATACAAGTCGAGC 59.419 40.000 0.00 0.00 0.00 5.03
3388 3818 5.163622 CCAATGCCTATGTGACTTAAACAGG 60.164 44.000 0.00 0.00 0.00 4.00
3392 3822 4.576463 GCCTATGTGACTTAAACAGGATGG 59.424 45.833 0.00 0.00 43.62 3.51
3475 3905 7.702348 GCCTTTATACTTTATGGCTTCAACTTG 59.298 37.037 0.00 0.00 37.58 3.16
3499 3929 3.366422 GTCTCTTTTCTGCTGCTAAGACG 59.634 47.826 0.00 0.00 0.00 4.18
3541 3971 3.951680 ACATCTTTGAAAACTTCCACCGT 59.048 39.130 0.00 0.00 0.00 4.83
3621 4051 5.645497 GTGCAGAAGAAAGAATAGGACACAT 59.355 40.000 0.00 0.00 0.00 3.21
3685 4115 3.447229 ACAATATAACAACAAGGCAGGGC 59.553 43.478 0.00 0.00 0.00 5.19
3694 4124 1.454479 AAGGCAGGGCGGAATCATG 60.454 57.895 0.00 0.00 0.00 3.07
3732 4162 6.128982 GCAGAAGCATGAAAAGTTCTAAAAGC 60.129 38.462 0.00 0.00 41.58 3.51
3788 4218 5.455612 GGCCATACTACAGCCTATAAACCAA 60.456 44.000 0.00 0.00 43.62 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.288812 TGAATATGTGGAGATTCCCCTAAATTT 58.711 33.333 0.00 0.00 35.03 1.82
1 2 7.825709 TGAATATGTGGAGATTCCCCTAAATT 58.174 34.615 0.00 0.00 35.03 1.82
3 4 6.619437 TCTGAATATGTGGAGATTCCCCTAAA 59.381 38.462 0.00 0.00 35.03 1.85
4 5 6.150332 TCTGAATATGTGGAGATTCCCCTAA 58.850 40.000 0.00 0.00 35.03 2.69
5 6 5.726560 TCTGAATATGTGGAGATTCCCCTA 58.273 41.667 0.00 0.00 35.03 3.53
6 7 4.570926 TCTGAATATGTGGAGATTCCCCT 58.429 43.478 0.00 0.00 35.03 4.79
7 8 4.982241 TCTGAATATGTGGAGATTCCCC 57.018 45.455 0.00 0.00 35.03 4.81
8 9 6.238484 CGTTTTCTGAATATGTGGAGATTCCC 60.238 42.308 0.00 0.00 35.03 3.97
9 10 6.538742 TCGTTTTCTGAATATGTGGAGATTCC 59.461 38.462 0.00 0.00 36.96 3.01
10 11 7.278868 AGTCGTTTTCTGAATATGTGGAGATTC 59.721 37.037 0.00 0.00 31.50 2.52
11 12 7.106239 AGTCGTTTTCTGAATATGTGGAGATT 58.894 34.615 0.00 0.00 0.00 2.40
12 13 6.644347 AGTCGTTTTCTGAATATGTGGAGAT 58.356 36.000 0.00 0.00 0.00 2.75
13 14 6.037786 AGTCGTTTTCTGAATATGTGGAGA 57.962 37.500 0.00 0.00 0.00 3.71
14 15 7.036220 AGTAGTCGTTTTCTGAATATGTGGAG 58.964 38.462 0.00 0.00 0.00 3.86
15 16 6.931838 AGTAGTCGTTTTCTGAATATGTGGA 58.068 36.000 0.00 0.00 0.00 4.02
16 17 8.697846 TTAGTAGTCGTTTTCTGAATATGTGG 57.302 34.615 0.00 0.00 0.00 4.17
18 19 9.924650 ACTTTAGTAGTCGTTTTCTGAATATGT 57.075 29.630 0.00 0.00 28.23 2.29
21 22 9.846248 GGTACTTTAGTAGTCGTTTTCTGAATA 57.154 33.333 0.00 0.00 38.33 1.75
22 23 8.362639 TGGTACTTTAGTAGTCGTTTTCTGAAT 58.637 33.333 0.00 0.00 38.33 2.57
23 24 7.649306 GTGGTACTTTAGTAGTCGTTTTCTGAA 59.351 37.037 0.00 0.00 38.33 3.02
24 25 7.141363 GTGGTACTTTAGTAGTCGTTTTCTGA 58.859 38.462 0.00 0.00 38.33 3.27
25 26 6.087291 CGTGGTACTTTAGTAGTCGTTTTCTG 59.913 42.308 0.00 0.00 38.33 3.02
26 27 6.145535 CGTGGTACTTTAGTAGTCGTTTTCT 58.854 40.000 0.00 0.00 38.33 2.52
27 28 5.164148 GCGTGGTACTTTAGTAGTCGTTTTC 60.164 44.000 0.00 0.00 38.33 2.29
28 29 4.681483 GCGTGGTACTTTAGTAGTCGTTTT 59.319 41.667 0.00 0.00 38.33 2.43
29 30 4.022849 AGCGTGGTACTTTAGTAGTCGTTT 60.023 41.667 0.00 0.00 38.33 3.60
30 31 3.503748 AGCGTGGTACTTTAGTAGTCGTT 59.496 43.478 0.00 0.00 38.33 3.85
31 32 3.077359 AGCGTGGTACTTTAGTAGTCGT 58.923 45.455 0.00 0.00 38.33 4.34
32 33 3.754188 AGCGTGGTACTTTAGTAGTCG 57.246 47.619 0.00 0.00 38.33 4.18
33 34 5.942872 TGTAAGCGTGGTACTTTAGTAGTC 58.057 41.667 0.00 0.00 38.33 2.59
34 35 5.964958 TGTAAGCGTGGTACTTTAGTAGT 57.035 39.130 0.00 0.00 41.04 2.73
35 36 7.823149 AAATGTAAGCGTGGTACTTTAGTAG 57.177 36.000 0.00 0.00 0.00 2.57
36 37 9.139174 GTAAAATGTAAGCGTGGTACTTTAGTA 57.861 33.333 0.00 0.00 0.00 1.82
37 38 7.148755 CGTAAAATGTAAGCGTGGTACTTTAGT 60.149 37.037 0.00 0.00 0.00 2.24
38 39 7.062138 TCGTAAAATGTAAGCGTGGTACTTTAG 59.938 37.037 0.00 0.00 0.00 1.85
39 40 6.865726 TCGTAAAATGTAAGCGTGGTACTTTA 59.134 34.615 0.00 0.00 0.00 1.85
40 41 5.695816 TCGTAAAATGTAAGCGTGGTACTTT 59.304 36.000 0.00 0.00 0.00 2.66
41 42 5.229423 TCGTAAAATGTAAGCGTGGTACTT 58.771 37.500 0.00 0.00 0.00 2.24
42 43 4.808558 TCGTAAAATGTAAGCGTGGTACT 58.191 39.130 0.00 0.00 0.00 2.73
43 44 5.514059 TTCGTAAAATGTAAGCGTGGTAC 57.486 39.130 0.00 0.00 0.00 3.34
44 45 5.063691 CCATTCGTAAAATGTAAGCGTGGTA 59.936 40.000 0.00 0.00 0.00 3.25
45 46 4.142773 CCATTCGTAAAATGTAAGCGTGGT 60.143 41.667 0.00 0.00 0.00 4.16
46 47 4.142773 ACCATTCGTAAAATGTAAGCGTGG 60.143 41.667 0.00 0.00 0.00 4.94
47 48 4.965062 ACCATTCGTAAAATGTAAGCGTG 58.035 39.130 0.00 0.00 0.00 5.34
48 49 4.933400 AGACCATTCGTAAAATGTAAGCGT 59.067 37.500 0.00 0.00 0.00 5.07
49 50 5.255596 CAGACCATTCGTAAAATGTAAGCG 58.744 41.667 0.00 0.00 0.00 4.68
50 51 5.569413 CCAGACCATTCGTAAAATGTAAGC 58.431 41.667 0.00 0.00 0.00 3.09
51 52 5.448632 GGCCAGACCATTCGTAAAATGTAAG 60.449 44.000 0.00 0.00 38.86 2.34
52 53 4.396790 GGCCAGACCATTCGTAAAATGTAA 59.603 41.667 0.00 0.00 38.86 2.41
53 54 3.942748 GGCCAGACCATTCGTAAAATGTA 59.057 43.478 0.00 0.00 38.86 2.29
54 55 2.752903 GGCCAGACCATTCGTAAAATGT 59.247 45.455 0.00 0.00 38.86 2.71
55 56 2.752354 TGGCCAGACCATTCGTAAAATG 59.248 45.455 0.00 0.00 46.36 2.32
56 57 3.080300 TGGCCAGACCATTCGTAAAAT 57.920 42.857 0.00 0.00 46.36 1.82
57 58 2.570415 TGGCCAGACCATTCGTAAAA 57.430 45.000 0.00 0.00 46.36 1.52
67 68 2.501610 GATCCGACTGGCCAGACC 59.498 66.667 39.19 26.21 39.84 3.85
68 69 2.105128 CGATCCGACTGGCCAGAC 59.895 66.667 39.19 30.88 34.14 3.51
69 70 2.362503 ACGATCCGACTGGCCAGA 60.363 61.111 39.19 17.84 34.14 3.86
70 71 2.105128 GACGATCCGACTGGCCAG 59.895 66.667 31.60 31.60 34.14 4.85
71 72 3.458163 GGACGATCCGACTGGCCA 61.458 66.667 4.71 4.71 34.14 5.36
72 73 2.630592 GAAGGACGATCCGACTGGCC 62.631 65.000 0.00 0.00 42.75 5.36
73 74 1.227002 GAAGGACGATCCGACTGGC 60.227 63.158 0.00 0.00 42.75 4.85
74 75 1.320344 TGGAAGGACGATCCGACTGG 61.320 60.000 0.00 0.00 42.75 4.00
75 76 0.179134 GTGGAAGGACGATCCGACTG 60.179 60.000 0.00 0.00 42.75 3.51
76 77 1.321074 GGTGGAAGGACGATCCGACT 61.321 60.000 0.00 0.00 42.75 4.18
77 78 1.141234 GGTGGAAGGACGATCCGAC 59.859 63.158 0.00 0.00 42.75 4.79
78 79 0.686441 ATGGTGGAAGGACGATCCGA 60.686 55.000 0.00 0.00 42.75 4.55
79 80 0.249489 GATGGTGGAAGGACGATCCG 60.249 60.000 0.00 0.00 42.75 4.18
80 81 1.123928 AGATGGTGGAAGGACGATCC 58.876 55.000 0.00 0.00 32.93 3.36
81 82 2.959707 ACTAGATGGTGGAAGGACGATC 59.040 50.000 0.00 0.00 32.74 3.69
82 83 3.033659 ACTAGATGGTGGAAGGACGAT 57.966 47.619 0.00 0.00 0.00 3.73
83 84 2.496070 CAACTAGATGGTGGAAGGACGA 59.504 50.000 0.00 0.00 0.00 4.20
84 85 2.233922 ACAACTAGATGGTGGAAGGACG 59.766 50.000 4.89 0.00 37.78 4.79
85 86 3.008049 ACACAACTAGATGGTGGAAGGAC 59.992 47.826 4.89 0.00 37.78 3.85
86 87 3.007940 CACACAACTAGATGGTGGAAGGA 59.992 47.826 4.89 0.00 37.78 3.36
87 88 3.244561 ACACACAACTAGATGGTGGAAGG 60.245 47.826 18.76 9.06 37.78 3.46
88 89 3.997021 GACACACAACTAGATGGTGGAAG 59.003 47.826 18.76 10.91 37.78 3.46
89 90 3.646162 AGACACACAACTAGATGGTGGAA 59.354 43.478 18.76 0.00 37.78 3.53
90 91 3.239449 AGACACACAACTAGATGGTGGA 58.761 45.455 18.76 0.00 37.78 4.02
91 92 3.685139 AGACACACAACTAGATGGTGG 57.315 47.619 18.76 6.75 37.78 4.61
92 93 5.392767 ACTAGACACACAACTAGATGGTG 57.607 43.478 15.30 15.30 39.25 4.17
93 94 5.784177 CAACTAGACACACAACTAGATGGT 58.216 41.667 4.89 0.00 39.25 3.55
94 95 4.627467 GCAACTAGACACACAACTAGATGG 59.373 45.833 4.89 0.00 38.78 3.51
95 96 5.347093 CAGCAACTAGACACACAACTAGATG 59.653 44.000 0.00 0.00 40.19 2.90
96 97 5.011125 ACAGCAACTAGACACACAACTAGAT 59.989 40.000 0.00 0.00 39.25 1.98
97 98 4.341235 ACAGCAACTAGACACACAACTAGA 59.659 41.667 0.00 0.00 39.25 2.43
98 99 4.621991 ACAGCAACTAGACACACAACTAG 58.378 43.478 0.00 0.00 41.01 2.57
99 100 4.665833 ACAGCAACTAGACACACAACTA 57.334 40.909 0.00 0.00 0.00 2.24
100 101 3.543680 ACAGCAACTAGACACACAACT 57.456 42.857 0.00 0.00 0.00 3.16
101 102 3.242739 CCAACAGCAACTAGACACACAAC 60.243 47.826 0.00 0.00 0.00 3.32
102 103 2.942376 CCAACAGCAACTAGACACACAA 59.058 45.455 0.00 0.00 0.00 3.33
103 104 2.169561 TCCAACAGCAACTAGACACACA 59.830 45.455 0.00 0.00 0.00 3.72
104 105 2.544267 GTCCAACAGCAACTAGACACAC 59.456 50.000 0.00 0.00 0.00 3.82
105 106 2.801699 CGTCCAACAGCAACTAGACACA 60.802 50.000 0.00 0.00 0.00 3.72
106 107 1.792949 CGTCCAACAGCAACTAGACAC 59.207 52.381 0.00 0.00 0.00 3.67
107 108 1.872237 GCGTCCAACAGCAACTAGACA 60.872 52.381 0.00 0.00 0.00 3.41
112 113 4.234019 TTGCGTCCAACAGCAACT 57.766 50.000 0.00 0.00 46.83 3.16
147 148 7.330208 CCTTGACAAATTTAATGAAGCTCCTTG 59.670 37.037 0.00 0.00 0.00 3.61
177 178 6.642733 TTTTTAGAGAGATGGTGGAAGGAT 57.357 37.500 0.00 0.00 0.00 3.24
186 216 7.228308 GTGGGATCAAGATTTTTAGAGAGATGG 59.772 40.741 0.00 0.00 0.00 3.51
200 230 7.955185 AGATAGTAGAGAATGTGGGATCAAGAT 59.045 37.037 0.00 0.00 0.00 2.40
201 231 7.301420 AGATAGTAGAGAATGTGGGATCAAGA 58.699 38.462 0.00 0.00 0.00 3.02
202 232 7.537596 AGATAGTAGAGAATGTGGGATCAAG 57.462 40.000 0.00 0.00 0.00 3.02
255 285 8.903820 ACTTTGCATTCTTTTTAAGTAGTGAGT 58.096 29.630 0.00 0.00 0.00 3.41
256 286 9.736023 AACTTTGCATTCTTTTTAAGTAGTGAG 57.264 29.630 0.00 0.00 0.00 3.51
266 296 9.598517 TTAGACATGAAACTTTGCATTCTTTTT 57.401 25.926 0.00 0.00 0.00 1.94
347 377 9.455847 GACGAGAAGTTTAGTAACTAAGTTGAA 57.544 33.333 0.00 0.00 43.74 2.69
349 379 8.792831 TGACGAGAAGTTTAGTAACTAAGTTG 57.207 34.615 0.00 0.00 43.74 3.16
372 402 8.402472 CCGTGATTTGCCTTATACTTATTTTGA 58.598 33.333 0.00 0.00 0.00 2.69
380 410 2.092646 TGCCCGTGATTTGCCTTATACT 60.093 45.455 0.00 0.00 0.00 2.12
381 411 2.290641 CTGCCCGTGATTTGCCTTATAC 59.709 50.000 0.00 0.00 0.00 1.47
382 412 2.171659 TCTGCCCGTGATTTGCCTTATA 59.828 45.455 0.00 0.00 0.00 0.98
383 413 1.064758 TCTGCCCGTGATTTGCCTTAT 60.065 47.619 0.00 0.00 0.00 1.73
384 414 0.326595 TCTGCCCGTGATTTGCCTTA 59.673 50.000 0.00 0.00 0.00 2.69
385 415 0.323725 ATCTGCCCGTGATTTGCCTT 60.324 50.000 0.00 0.00 0.00 4.35
386 416 0.546122 TATCTGCCCGTGATTTGCCT 59.454 50.000 0.00 0.00 0.00 4.75
387 417 1.388547 TTATCTGCCCGTGATTTGCC 58.611 50.000 0.00 0.00 0.00 4.52
388 418 3.066621 TGATTTATCTGCCCGTGATTTGC 59.933 43.478 0.00 0.00 0.00 3.68
389 419 4.096231 TGTGATTTATCTGCCCGTGATTTG 59.904 41.667 0.00 0.00 0.00 2.32
449 479 3.084786 AGGGCTAACACAATGCTCTTTC 58.915 45.455 0.00 0.00 33.13 2.62
450 480 3.160679 AGGGCTAACACAATGCTCTTT 57.839 42.857 0.00 0.00 33.13 2.52
452 482 2.887151 AAGGGCTAACACAATGCTCT 57.113 45.000 0.00 0.00 39.48 4.09
453 483 5.385509 TTTTAAGGGCTAACACAATGCTC 57.614 39.130 0.00 0.00 0.00 4.26
454 484 5.799827 TTTTTAAGGGCTAACACAATGCT 57.200 34.783 0.00 0.00 0.00 3.79
478 508 1.202687 CCCAAGATAGCGCCAAGATGA 60.203 52.381 2.29 0.00 0.00 2.92
502 532 0.394352 ATCCCGCCAAGCCTAAACAG 60.394 55.000 0.00 0.00 0.00 3.16
509 539 0.320050 TTTTCAAATCCCGCCAAGCC 59.680 50.000 0.00 0.00 0.00 4.35
513 543 3.864160 GCAAGATTTTTCAAATCCCGCCA 60.864 43.478 5.73 0.00 0.00 5.69
515 545 3.324993 TGCAAGATTTTTCAAATCCCGC 58.675 40.909 5.73 8.79 0.00 6.13
518 548 7.360607 CCAAGTGATGCAAGATTTTTCAAATCC 60.361 37.037 5.73 0.00 0.00 3.01
532 562 1.412079 AAACCTGCCAAGTGATGCAA 58.588 45.000 0.00 0.00 36.98 4.08
554 903 5.295787 TGGACTCGGTGATTATAAAATGCAC 59.704 40.000 0.00 0.00 0.00 4.57
560 909 5.883115 TGCATTTGGACTCGGTGATTATAAA 59.117 36.000 0.00 0.00 0.00 1.40
572 921 3.996363 GGTTGGATTTTGCATTTGGACTC 59.004 43.478 0.00 0.00 0.00 3.36
583 932 4.970003 GCTATTCGATTCGGTTGGATTTTG 59.030 41.667 6.18 0.00 0.00 2.44
611 960 2.184322 CGGTGTCACTGCGCCTAT 59.816 61.111 4.18 0.00 36.91 2.57
665 1018 6.375455 ACATATGGATCAGTTTGGTTGTTCTC 59.625 38.462 7.80 0.00 0.00 2.87
810 1184 0.550914 AGCCAGAACCAGGTTGACAA 59.449 50.000 10.47 0.00 0.00 3.18
828 1202 3.046087 CAGGCGCAGGTCACACAG 61.046 66.667 10.83 0.00 0.00 3.66
842 1216 2.542411 GCGCAGGATAAATCAAAGCAGG 60.542 50.000 0.30 0.00 0.00 4.85
849 1223 2.288666 GTGGAAGCGCAGGATAAATCA 58.711 47.619 11.47 0.00 0.00 2.57
1366 1749 3.157680 CGGGTTCCCAGACAAGGT 58.842 61.111 8.70 0.00 0.00 3.50
1425 1808 1.105167 CCGTCGCCTGTATCCTGGTA 61.105 60.000 0.00 0.00 32.49 3.25
1956 2363 4.105727 CAGCAGTGCTCGATCTGG 57.894 61.111 16.58 0.00 36.40 3.86
2247 2654 4.373116 GGCCTGGCGTCGTCTTGA 62.373 66.667 13.40 0.00 0.00 3.02
2748 3177 1.739562 GCTCACGTTGCTCTCCCTG 60.740 63.158 3.33 0.00 0.00 4.45
2930 3359 3.869272 GGCTCGCGTGAATGCCAG 61.869 66.667 20.80 0.00 44.34 4.85
2943 3372 1.153997 GAGAAGACCACGACGGCTC 60.154 63.158 0.00 0.00 39.03 4.70
2950 3379 1.095600 TCGATCAGGAGAAGACCACG 58.904 55.000 0.00 0.00 0.00 4.94
2962 3391 7.751732 TCCAAAATTCAAATGTAGTCGATCAG 58.248 34.615 0.00 0.00 0.00 2.90
2963 3392 7.626240 GCTCCAAAATTCAAATGTAGTCGATCA 60.626 37.037 0.00 0.00 0.00 2.92
2964 3393 6.688813 GCTCCAAAATTCAAATGTAGTCGATC 59.311 38.462 0.00 0.00 0.00 3.69
2965 3394 6.150976 TGCTCCAAAATTCAAATGTAGTCGAT 59.849 34.615 0.00 0.00 0.00 3.59
2966 3395 5.471797 TGCTCCAAAATTCAAATGTAGTCGA 59.528 36.000 0.00 0.00 0.00 4.20
2967 3396 5.698832 TGCTCCAAAATTCAAATGTAGTCG 58.301 37.500 0.00 0.00 0.00 4.18
2968 3397 8.538409 AATTGCTCCAAAATTCAAATGTAGTC 57.462 30.769 0.00 0.00 0.00 2.59
2969 3398 8.907222 AAATTGCTCCAAAATTCAAATGTAGT 57.093 26.923 0.00 0.00 0.00 2.73
2970 3399 9.601971 CAAAATTGCTCCAAAATTCAAATGTAG 57.398 29.630 0.00 0.00 0.00 2.74
2971 3400 8.566260 CCAAAATTGCTCCAAAATTCAAATGTA 58.434 29.630 0.00 0.00 0.00 2.29
2972 3401 7.284944 TCCAAAATTGCTCCAAAATTCAAATGT 59.715 29.630 0.00 0.00 0.00 2.71
2973 3402 7.649973 TCCAAAATTGCTCCAAAATTCAAATG 58.350 30.769 0.00 0.00 0.00 2.32
2974 3403 7.820578 TCCAAAATTGCTCCAAAATTCAAAT 57.179 28.000 0.00 0.00 0.00 2.32
2975 3404 7.636150 TTCCAAAATTGCTCCAAAATTCAAA 57.364 28.000 0.00 0.00 0.00 2.69
2976 3405 7.636150 TTTCCAAAATTGCTCCAAAATTCAA 57.364 28.000 0.00 0.00 0.00 2.69
2977 3406 7.820578 ATTTCCAAAATTGCTCCAAAATTCA 57.179 28.000 0.00 0.00 0.00 2.57
2978 3407 9.611284 GTAATTTCCAAAATTGCTCCAAAATTC 57.389 29.630 7.69 0.00 0.00 2.17
2979 3408 8.288913 CGTAATTTCCAAAATTGCTCCAAAATT 58.711 29.630 7.69 0.00 0.00 1.82
2980 3409 7.443879 ACGTAATTTCCAAAATTGCTCCAAAAT 59.556 29.630 7.69 0.00 0.00 1.82
2981 3410 6.763610 ACGTAATTTCCAAAATTGCTCCAAAA 59.236 30.769 7.69 0.00 0.00 2.44
2982 3411 6.284459 ACGTAATTTCCAAAATTGCTCCAAA 58.716 32.000 7.69 0.00 0.00 3.28
2983 3412 5.848406 ACGTAATTTCCAAAATTGCTCCAA 58.152 33.333 7.69 0.00 0.00 3.53
2984 3413 5.461032 ACGTAATTTCCAAAATTGCTCCA 57.539 34.783 7.69 0.00 0.00 3.86
2985 3414 5.120053 CCAACGTAATTTCCAAAATTGCTCC 59.880 40.000 7.69 0.00 0.00 4.70
2986 3415 5.923684 TCCAACGTAATTTCCAAAATTGCTC 59.076 36.000 7.69 0.00 0.00 4.26
2987 3416 5.848406 TCCAACGTAATTTCCAAAATTGCT 58.152 33.333 7.69 0.00 0.00 3.91
2988 3417 6.347321 CCTTCCAACGTAATTTCCAAAATTGC 60.347 38.462 7.69 5.75 0.00 3.56
2989 3418 6.926272 TCCTTCCAACGTAATTTCCAAAATTG 59.074 34.615 7.69 0.00 0.00 2.32
2990 3419 7.056844 TCCTTCCAACGTAATTTCCAAAATT 57.943 32.000 0.00 3.43 0.00 1.82
2991 3420 6.658188 TCCTTCCAACGTAATTTCCAAAAT 57.342 33.333 0.00 0.00 0.00 1.82
2992 3421 6.321690 TCTTCCTTCCAACGTAATTTCCAAAA 59.678 34.615 0.00 0.00 0.00 2.44
2993 3422 5.828859 TCTTCCTTCCAACGTAATTTCCAAA 59.171 36.000 0.00 0.00 0.00 3.28
2994 3423 5.378332 TCTTCCTTCCAACGTAATTTCCAA 58.622 37.500 0.00 0.00 0.00 3.53
2995 3424 4.975631 TCTTCCTTCCAACGTAATTTCCA 58.024 39.130 0.00 0.00 0.00 3.53
3212 3642 9.634163 GGTGGGTTTAACTACTTCATAATTTTG 57.366 33.333 0.00 0.00 0.00 2.44
3227 3657 8.113173 TGTATAATTGTTGAGGTGGGTTTAAC 57.887 34.615 0.00 0.00 0.00 2.01
3248 3678 2.831685 TTGTGTGGCTCGACTTGTAT 57.168 45.000 0.00 0.00 0.00 2.29
3260 3690 7.339212 TCCTTGATATTATGAGGTTTTGTGTGG 59.661 37.037 0.00 0.00 0.00 4.17
3290 3720 5.979517 GCTGGCCTTTTAGCTGTAATTATTG 59.020 40.000 3.32 0.00 36.99 1.90
3354 3784 4.581409 CACATAGGCATTGGATCAATCACA 59.419 41.667 0.00 0.00 31.05 3.58
3475 3905 2.770164 TAGCAGCAGAAAAGAGACCC 57.230 50.000 0.00 0.00 0.00 4.46
3499 3929 6.979238 AGATGTTTAGTGACTATTCTAACGCC 59.021 38.462 0.00 0.00 0.00 5.68
3530 3960 4.222145 TCTTGAAGCTATACGGTGGAAGTT 59.778 41.667 0.00 0.00 0.00 2.66
3535 3965 5.235186 CAGATTTCTTGAAGCTATACGGTGG 59.765 44.000 0.00 0.00 30.81 4.61
3541 3971 7.686438 TGTTTGCAGATTTCTTGAAGCTATA 57.314 32.000 0.00 0.00 30.81 1.31
3570 4000 5.249393 ACCTGAGTATTTCTCTTGGTGATGT 59.751 40.000 10.33 0.00 43.26 3.06
3621 4051 9.772973 ATACACTTGTTCTCAAACACTATTGTA 57.227 29.630 0.00 0.00 44.90 2.41
3685 4115 3.534554 TGTTGAGATGTCCATGATTCCG 58.465 45.455 0.00 0.00 0.00 4.30
3694 4124 1.736681 GCTTCTGCTGTTGAGATGTCC 59.263 52.381 0.00 0.00 36.03 4.02
3788 4218 6.170506 ACATGTCGTTATATCTTGTGGTTGT 58.829 36.000 0.00 0.00 0.00 3.32
3820 4250 2.816087 GCATGGAGTGAACTGTGAATGT 59.184 45.455 0.00 0.00 0.00 2.71
3853 4283 6.409524 TTTGACCATTCTTTTGCTCATCTT 57.590 33.333 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.